******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/ZNF217.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr1:206097758-206097778 1.0000 20 chr22:25794761-25794781 1.0000 20 chr2:196271860-196271880 1.0000 20 chr7:127552064-127552084 1.0000 20 chr1:61853714-61853734 1.0000 20 chr14:73763638-73763658 1.0000 20 chr1:63188636-63188656 1.0000 20 chr8:126268324-126268344 1.0000 20 chr7:38335875-38335895 1.0000 20 chr1:172307275-172307295 1.0000 20 chr16:50099623-50099643 1.0000 20 chr19:39045352-39045372 1.0000 20 chr5:40570969-40570989 1.0000 20 chr3:156393427-156393447 1.0000 20 chr10:122367411-12236743 1.0000 20 chr12:778721-778741 1.0000 20 chr2:131581770-131581790 1.0000 20 chr7:115790857-115790877 1.0000 20 chr6:124246678-124246698 1.0000 20 chr3:56994344-56994364 1.0000 20 chr10:122365873-12236589 1.0000 20 chr8:95903596-95903616 1.0000 20 chr1:181103494-181103514 1.0000 20 chr9:34523148-34523168 1.0000 20 chr19:4968513-4968533 1.0000 20 chr18:4287457-4287477 1.0000 20 chr10:93556685-93556705 1.0000 20 chr19:7213856-7213876 1.0000 20 chr4:71527270-71527290 1.0000 20 chr3:196139654-196139674 1.0000 20 chr1:15558612-15558632 1.0000 20 chr11:121078410-12107843 1.0000 20 chr13:70664281-70664301 1.0000 20 chr16:18604407-18604427 1.0000 20 chr3:194865254-194865274 1.0000 20 chr17:72413643-72413663 1.0000 20 chr1:217668750-217668770 1.0000 20 chr19:43019703-43019723 1.0000 20 chr7:69308781-69308801 1.0000 20 chr17:7145883-7145903 1.0000 20 chr4:78551234-78551254 1.0000 20 chr18:58316456-58316476 1.0000 20 chr1:192609289-192609309 1.0000 20 chr21:34746906-34746926 1.0000 20 chr15:80193553-80193573 1.0000 20 chr13:45991332-45991352 1.0000 20 chr19:40909312-40909332 1.0000 20 chr14:93548802-93548822 1.0000 20 chr8:101156235-101156255 1.0000 20 chr5:116099482-116099502 1.0000 20 chrX:1610689-1610709 1.0000 20 chr19:7246800-7246820 1.0000 20 chr16:16295490-16295510 1.0000 20 chr2:208772041-208772061 1.0000 20 chr12:103575183-10357520 1.0000 20 chr1:80176771-80176791 1.0000 20 chr12:122029239-12202925 1.0000 20 chr7:50185820-50185840 1.0000 20 chr2:191471250-191471270 1.0000 20 chr10:64391890-64391910 1.0000 20 chr17:38309191-38309211 1.0000 20 chr19:11647141-11647161 1.0000 20 chr16:17123643-17123663 1.0000 20 chr6:22358139-22358159 1.0000 20 chr10:125866215-12586623 1.0000 20 chr10:15165320-15165340 1.0000 20 chr8:8774811-8774831 1.0000 20 chr5:124338637-124338657 1.0000 20 chr19:14328094-14328114 1.0000 20 chr22:38902439-38902459 1.0000 20 chr11:72231020-72231040 1.0000 20 chr19:921628-921648 1.0000 20 chr18:650561-650581 1.0000 20 chr11:123350382-12335040 1.0000 20 chr10:73078790-73078810 1.0000 20 chr8:61429042-61429062 1.0000 20 chr22:18484819-18484839 1.0000 20 chr1:12138837-12138857 1.0000 20 chr1:11025000-11025020 1.0000 20 chr4:24586618-24586638 1.0000 20 chr1:235144905-235144925 1.0000 20 chr22:43112696-43112716 1.0000 20 chr7:2442731-2442751 1.0000 20 chr2:65632243-65632263 1.0000 20 chr9:73923540-73923560 1.0000 20 chr1:192595800-192595820 1.0000 20 chr9:80850718-80850738 1.0000 20 chr2:157933449-157933469 1.0000 20 chr1:24863216-24863236 1.0000 20 chr16:4364396-4364416 1.0000 20 chr11:118741599-11874161 1.0000 20 chr4:150960010-150960030 1.0000 20 chr9:71581754-71581774 1.0000 20 chr17:72279547-72279567 1.0000 20 chr3:175207425-175207445 1.0000 20 chr2:196521864-196521884 1.0000 20 chr20:46118434-46118454 1.0000 20 chr19:6772279-6772299 1.0000 20 chr15:85873021-85873041 1.0000 20 chr1:117151697-117151717 1.0000 20 chr7:30254553-30254573 1.0000 20 chr9:132778811-132778831 1.0000 20 chr17:7035572-7035592 1.0000 20 chr6:133194248-133194268 1.0000 20 chr1:157623086-157623106 1.0000 20 chrX:40730435-40730455 1.0000 20 chr12:46062969-46062989 1.0000 20 chr2:197042422-197042442 1.0000 20 chr1:31238570-31238590 1.0000 20 chr2:109024700-109024720 1.0000 20 chr1:25349851-25349871 1.0000 20 chr3:56821851-56821871 1.0000 20 chr21:35578530-35578550 1.0000 20 chr12:102335515-10233553 1.0000 20 chr1:241648619-241648639 1.0000 20 chr6:30726408-30726428 1.0000 20 chr9:126031142-126031162 1.0000 20 chr10:97989718-97989738 1.0000 20 chr14:23400025-23400045 1.0000 20 chr13:36992276-36992296 1.0000 20 chr17:1162448-1162468 1.0000 20 chr5:176718460-176718480 1.0000 20 chr4:6965768-6965788 1.0000 20 chr12:49111040-49111060 1.0000 20 chr6:3389330-3389350 1.0000 20 chr18:62047595-62047615 1.0000 20 chr17:29025297-29025317 1.0000 20 chr19:2475578-2475598 1.0000 20 chr19:54605766-54605786 1.0000 20 chr10:81009380-81009400 1.0000 20 chr22:29563195-29563215 1.0000 20 chr14:76139909-76139929 1.0000 20 chr6:37530349-37530369 1.0000 20 chr20:33003161-33003181 1.0000 20 chr9:127049131-127049151 1.0000 20 chr22:38783099-38783119 1.0000 20 chr14:23274035-23274055 1.0000 20 chr11:61447791-61447811 1.0000 20 chr3:160167019-160167039 1.0000 20 chr3:37216388-37216408 1.0000 20 chr12:123205324-12320534 1.0000 20 chr1:21258914-21258934 1.0000 20 chr5:180615103-180615123 1.0000 20 chr9:126980025-126980045 1.0000 20 chr22:50050649-50050669 1.0000 20 chr11:116933965-11693398 1.0000 20 chr4:111405365-111405385 1.0000 20 chr2:203712800-203712820 1.0000 20 chr8:60489527-60489547 1.0000 20 chr3:133285900-133285920 1.0000 20 chr2:71558518-71558538 1.0000 20 chr12:109248878-10924889 1.0000 20 chr7:74058454-74058474 1.0000 20 chr3:25810620-25810640 1.0000 20 chr21:32534499-32534519 1.0000 20 chr19:14116351-14116371 1.0000 20 chr5:55367119-55367139 1.0000 20 chr18:38605846-38605866 1.0000 20 chr9:127019923-127019943 1.0000 20 chr1:204422684-204422704 1.0000 20 chr3:108299127-108299147 1.0000 20 chr19:1103014-1103034 1.0000 20 chr6:34360457-34360477 1.0000 20 chr2:204736391-204736411 1.0000 20 chr10:112626102-11262612 1.0000 20 chr8:105187952-105187972 1.0000 20 chrX:9971586-9971606 1.0000 20 chr6:141784964-141784984 1.0000 20 chr7:5622207-5622227 1.0000 20 chr14:94276008-94276028 1.0000 20 chr2:145188328-145188348 1.0000 20 chr17:33668878-33668898 1.0000 20 chr20:32361453-32361473 1.0000 20 chr3:183254344-183254364 1.0000 20 chr19:7766513-7766533 1.0000 20 chr6:15613327-15613347 1.0000 20 chr2:111920442-111920462 1.0000 20 chr12:1059521-1059541 1.0000 20 chr5:158179570-158179590 1.0000 20 chr20:32891452-32891472 1.0000 20 chr17:78884823-78884843 1.0000 20 chr6:57285135-57285155 1.0000 20 chr1:23442155-23442175 1.0000 20 chr4:123554016-123554036 1.0000 20 chr6:108766583-108766603 1.0000 20 chr9:112161699-112161719 1.0000 20 chr6:107085788-107085808 1.0000 20 chr11:125439017-12543903 1.0000 20 chr1:45936168-45936188 1.0000 20 chr15:40393556-40393576 1.0000 20 chr19:14691539-14691559 1.0000 20 chr3:15357915-15357935 1.0000 20 chr3:196184440-196184460 1.0000 20 chr12:1107342-1107362 1.0000 20 chr10:97416498-97416518 1.0000 20 chr6:149373536-149373556 1.0000 20 chr19:18451257-18451277 1.0000 20 chr11:64053187-64053207 1.0000 20 chr4:119606122-119606142 1.0000 20 chr14:73758614-73758634 1.0000 20 chr19:2051643-2051663 1.0000 20 chr3:175195785-175195805 1.0000 20 chr6:28866136-28866156 1.0000 20 chr14:95623818-95623838 1.0000 20 chr19:16251972-16251992 1.0000 20 chr11:130724541-13072456 1.0000 20 chr1:55088644-55088664 1.0000 20 chr2:174212791-174212811 1.0000 20 chr13:74542163-74542183 1.0000 20 chr12:121123132-12112315 1.0000 20 chr4:22709192-22709212 1.0000 20 chr18:44646996-44647016 1.0000 20 chr7:50188568-50188588 1.0000 20 chr3:118529333-118529353 1.0000 20 chr7:5437149-5437169 1.0000 20 chr5:137225379-137225399 1.0000 20 chr12:6408935-6408955 1.0000 20 chr2:80753563-80753583 1.0000 20 chr8:2556834-2556854 1.0000 20 chr10:97052873-97052893 1.0000 20 chr2:46202331-46202351 1.0000 20 chr21:45206573-45206593 1.0000 20 chr6:15732860-15732880 1.0000 20 chr20:46044550-46044570 1.0000 20 chr6:102434565-102434585 1.0000 20 chr17:40713745-40713765 1.0000 20 chr8:21777133-21777153 1.0000 20 chr16:10980672-10980692 1.0000 20 chr4:3357258-3357278 1.0000 20 chr19:36193003-36193023 1.0000 20 chr7:116323994-116324014 1.0000 20 chr19:38469493-38469513 1.0000 20 chr15:66219521-66219541 1.0000 20 chr16:47052567-47052587 1.0000 20 chr6:157390063-157390083 1.0000 20 chr16:89253381-89253401 1.0000 20 chr17:56415996-56416016 1.0000 20 chr19:46209687-46209707 1.0000 20 chr4:40578932-40578952 1.0000 20 chr17:46188764-46188784 1.0000 20 chr3:110455335-110455355 1.0000 20 chr11:114490573-11449059 1.0000 20 chr19:17445638-17445658 1.0000 20 chr16:30471737-30471757 1.0000 20 chr12:40707930-40707950 1.0000 20 chr2:216705453-216705473 1.0000 20 chr10:12306123-12306143 1.0000 20 chr6:30875563-30875583 1.0000 20 chr11:45838997-45839017 1.0000 20 chr1:53833999-53834019 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_ZNF217/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/ZNF217.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.275 C 0.239 G 0.228 T 0.258 Background letter frequencies (from file dataset with add-one prior applied): A 0.275 C 0.239 G 0.228 T 0.258 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CAGSCTGG MEME-1 width = 8 sites = 13 llr = 129 E-value = 4.3e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGSCTGG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :a:::::: pos.-specific C a::69::: probability G ::841:aa matrix T ::2::a:: bits 2.1 * ** 1.9 ** *** 1.7 ** **** 1.5 ** **** Relative 1.3 *** **** Entropy 1.1 ******** (14.3 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAGCCTGG consensus TG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGSCTGG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:55088644-55088664 7 1.15e-05 cgagac cagcctgg ccaaca chr12:123205324-12320534 3 1.15e-05 ac cagcctgg ccaatatggt chr14:23400025-23400045 2 1.15e-05 c cagcctgg ccaacatgaa chr17:7035572-7035592 4 1.15e-05 gac cagcctgg ccaacatgg chr17:72279547-72279567 2 1.15e-05 c cagcctgg gcaacatagt chr10:12306123-12306143 8 2.24e-05 tattggt caggctgg tctcg chr17:1162448-1162468 11 2.24e-05 ccatgttggc caggctgg tc chr9:80850718-80850738 6 2.24e-05 ttggc caggctgg tctcgaa chr7:127552064-127552084 11 2.24e-05 ctatgttgct caggctgg ac chr12:121123132-12112315 5 3.54e-05 agat catcctgg ccaacatg chr8:126268324-126268344 3 3.54e-05 ac catcctgg ccaacatggt chr5:116099482-116099502 11 4.78e-05 agggtttcac catgctgg cc chr22:29563195-29563215 9 5.88e-05 CTCTGgcc cagcgtgg tggt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGSCTGG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:55088644-55088664 1.1e-05 6_[+1]_6 chr12:123205324-12320534 1.1e-05 2_[+1]_10 chr14:23400025-23400045 1.1e-05 1_[+1]_11 chr17:7035572-7035592 1.1e-05 3_[+1]_9 chr17:72279547-72279567 1.1e-05 1_[+1]_11 chr10:12306123-12306143 2.2e-05 7_[+1]_5 chr17:1162448-1162468 2.2e-05 10_[+1]_2 chr9:80850718-80850738 2.2e-05 5_[+1]_7 chr7:127552064-127552084 2.2e-05 10_[+1]_2 chr12:121123132-12112315 3.5e-05 4_[+1]_8 chr8:126268324-126268344 3.5e-05 2_[+1]_10 chr5:116099482-116099502 4.8e-05 10_[+1]_2 chr22:29563195-29563215 5.9e-05 8_[+1]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGSCTGG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGSCTGG width=8 seqs=13 chr1:55088644-55088664 ( 7) CAGCCTGG 1 chr12:123205324-12320534 ( 3) CAGCCTGG 1 chr14:23400025-23400045 ( 2) CAGCCTGG 1 chr17:7035572-7035592 ( 4) CAGCCTGG 1 chr17:72279547-72279567 ( 2) CAGCCTGG 1 chr10:12306123-12306143 ( 8) CAGGCTGG 1 chr17:1162448-1162468 ( 11) CAGGCTGG 1 chr9:80850718-80850738 ( 6) CAGGCTGG 1 chr7:127552064-127552084 ( 11) CAGGCTGG 1 chr12:121123132-12112315 ( 5) CATCCTGG 1 chr8:126268324-126268344 ( 3) CATCCTGG 1 chr5:116099482-116099502 ( 11) CATGCTGG 1 chr22:29563195-29563215 ( 9) CAGCGTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGSCTGG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 6.83603 E= 4.3e-008 -1035 207 -1035 -1035 186 -1035 -1035 -1035 -1035 -1035 175 -16 -1035 137 75 -1035 -1035 195 -157 -1035 -1035 -1035 -1035 195 -1035 -1035 213 -1035 -1035 -1035 213 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGSCTGG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 4.3e-008 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.769231 0.230769 0.000000 0.615385 0.384615 0.000000 0.000000 0.923077 0.076923 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGSCTGG MEME-1 regular expression -------------------------------------------------------------------------------- CA[GT][CG]CTGG -------------------------------------------------------------------------------- Time 3.14 secs. ******************************************************************************** ******************************************************************************** MOTIF CYYAGCCT MEME-2 width = 8 sites = 29 llr = 198 E-value = 2.9e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif CYYAGCCT MEME-2 Description -------------------------------------------------------------------------------- Simplified A 1::63::: pos.-specific C 9671:89: probability G :::27::: matrix T :431:21a bits 2.1 1.9 * 1.7 * 1.5 * ** Relative 1.3 * **** Entropy 1.1 *** **** (9.8 bits) 0.9 *** **** 0.6 *** **** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCCAGCCT consensus TTGAT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYYAGCCT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:80753563-80753583 9 2.62e-05 ccgcccac ctcagcct ccca chr6:28866136-28866156 2 2.62e-05 c ctcagcct cccaaagtgc chr19:39045352-39045372 10 2.62e-05 tcctcctgc ctcagcct ccc chr16:18604407-18604427 12 5.03e-05 gtctcgaact cctagcct c chr8:101156235-101156255 9 6.55e-05 gtgatcca cccaacct tggc chr19:36193003-36193023 11 1.16e-04 atctgcccgc cttagcct cc chr4:6965768-6965788 4 1.16e-04 cac ctcggcct cccaaagta chr9:126031142-126031162 5 1.16e-04 GCGT CCCCGCCT TCCTCCCG chr7:5437149-5437169 12 1.99e-04 Ttctcagtgc ctcagtct g chr1:25349851-25349871 6 1.99e-04 taacc ctcagtct tcttatc chr10:97989718-97989738 12 2.63e-04 ttttcattct cttggcct c chr6:15613327-15613347 13 2.78e-04 ggggtttgag accagcct chr20:33003161-33003181 5 2.78e-04 cgag accagcct aggcaaca chr9:132778811-132778831 13 2.78e-04 ggagttcaac accagcct chr7:38335875-38335895 1 2.89e-04 . ccctgcct ctactaaaaa chr21:32534499-32534519 5 3.50e-04 gtcg cttaacct ctctgttc chr2:216705453-216705473 2 4.31e-04 t cctgacct caggtgatcc chr20:46044550-46044570 8 4.31e-04 gtgaaac ccccgtct ctact chr14:73758614-73758634 5 4.31e-04 aact cctgacct cgtgatcc chr3:183254344-183254364 11 4.31e-04 gtgagtgaac ctcagctt cc chr2:71558518-71558538 5 4.31e-04 aact cctgacct cagatgat chr3:133285900-133285920 1 4.31e-04 . cctgacct cgtgatcctc chr2:191471250-191471270 13 4.31e-04 catggcaaaa ccccgtct chr1:172307275-172307295 7 4.31e-04 cgaact cctgacct ggtgat chr1:21258914-21258934 11 4.85e-04 tctcaagggg cctagctt tc chr1:15558612-15558632 3 8.82e-04 aa ccctgtct ctactaaaag chr2:208772041-208772061 10 9.63e-04 atggtgaaa ccccatct cta chr19:54605766-54605786 6 1.07e-03 ccggg ctcagttt cttcgtc chr9:126980025-126980045 6 1.31e-03 gggaa accagctt gtaatga -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYYAGCCT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:80753563-80753583 2.6e-05 8_[+2]_4 chr6:28866136-28866156 2.6e-05 1_[+2]_11 chr19:39045352-39045372 2.6e-05 9_[+2]_3 chr16:18604407-18604427 5e-05 11_[+2]_1 chr8:101156235-101156255 6.6e-05 8_[+2]_4 chr19:36193003-36193023 0.00012 10_[+2]_2 chr4:6965768-6965788 0.00012 3_[+2]_9 chr9:126031142-126031162 0.00012 4_[+2]_8 chr7:5437149-5437169 0.0002 11_[+2]_1 chr1:25349851-25349871 0.0002 5_[+2]_7 chr10:97989718-97989738 0.00026 11_[+2]_1 chr6:15613327-15613347 0.00028 12_[+2] chr20:33003161-33003181 0.00028 4_[+2]_8 chr9:132778811-132778831 0.00028 12_[+2] chr7:38335875-38335895 0.00029 [+2]_12 chr21:32534499-32534519 0.00035 4_[+2]_8 chr2:216705453-216705473 0.00043 1_[+2]_11 chr20:46044550-46044570 0.00043 7_[+2]_5 chr14:73758614-73758634 0.00043 4_[+2]_8 chr3:183254344-183254364 0.00043 10_[+2]_2 chr2:71558518-71558538 0.00043 4_[+2]_8 chr3:133285900-133285920 0.00043 [+2]_12 chr2:191471250-191471270 0.00043 12_[+2] chr1:172307275-172307295 0.00043 6_[+2]_6 chr1:21258914-21258934 0.00049 10_[+2]_2 chr1:15558612-15558632 0.00088 2_[+2]_10 chr2:208772041-208772061 0.00096 9_[+2]_3 chr19:54605766-54605786 0.0011 5_[+2]_7 chr9:126980025-126980045 0.0013 5_[+2]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYYAGCCT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CYYAGCCT width=8 seqs=29 chr2:80753563-80753583 ( 9) CTCAGCCT 1 chr6:28866136-28866156 ( 2) CTCAGCCT 1 chr19:39045352-39045372 ( 10) CTCAGCCT 1 chr16:18604407-18604427 ( 12) CCTAGCCT 1 chr8:101156235-101156255 ( 9) CCCAACCT 1 chr19:36193003-36193023 ( 11) CTTAGCCT 1 chr4:6965768-6965788 ( 4) CTCGGCCT 1 chr9:126031142-126031162 ( 5) CCCCGCCT 1 chr7:5437149-5437169 ( 12) CTCAGTCT 1 chr1:25349851-25349871 ( 6) CTCAGTCT 1 chr10:97989718-97989738 ( 12) CTTGGCCT 1 chr6:15613327-15613347 ( 13) ACCAGCCT 1 chr20:33003161-33003181 ( 5) ACCAGCCT 1 chr9:132778811-132778831 ( 13) ACCAGCCT 1 chr7:38335875-38335895 ( 1) CCCTGCCT 1 chr21:32534499-32534519 ( 5) CTTAACCT 1 chr2:216705453-216705473 ( 2) CCTGACCT 1 chr20:46044550-46044570 ( 8) CCCCGTCT 1 chr14:73758614-73758634 ( 5) CCTGACCT 1 chr3:183254344-183254364 ( 11) CTCAGCTT 1 chr2:71558518-71558538 ( 5) CCTGACCT 1 chr3:133285900-133285920 ( 1) CCTGACCT 1 chr2:191471250-191471270 ( 13) CCCCGTCT 1 chr1:172307275-172307295 ( 7) CCTGACCT 1 chr1:21258914-21258934 ( 11) CCTAGCTT 1 chr1:15558612-15558632 ( 3) CCCTGTCT 1 chr2:208772041-208772061 ( 10) CCCCATCT 1 chr19:54605766-54605786 ( 6) CTCAGTTT 1 chr9:126980025-126980045 ( 6) ACCAGCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYYAGCCT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 5.80781 E= 2.9e+000 -100 185 -1150 -1150 -1150 138 -1150 56 -1150 146 -1150 42 100 -79 8 -190 0 -1150 167 -1150 -1150 167 -1150 -10 -1150 185 -1150 -90 -1150 -1150 -1150 195 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYYAGCCT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 2.9e+000 0.137931 0.862069 0.000000 0.000000 0.000000 0.620690 0.000000 0.379310 0.000000 0.655172 0.000000 0.344828 0.551724 0.137931 0.241379 0.068966 0.275862 0.000000 0.724138 0.000000 0.000000 0.758621 0.000000 0.241379 0.000000 0.862069 0.000000 0.137931 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYYAGCCT MEME-2 regular expression -------------------------------------------------------------------------------- C[CT][CT][AG][GA][CT]CT -------------------------------------------------------------------------------- Time 3.94 secs. ******************************************************************************** ******************************************************************************** MOTIF CCAACATG MEME-3 width = 8 sites = 8 llr = 80 E-value = 1.4e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCAACATG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::aa:a:: pos.-specific C aa::8::: probability G ::::::1a matrix T ::::3:9: bits 2.1 ** * 1.9 **** * * 1.7 **** * * 1.5 **** *** Relative 1.3 ******** Entropy 1.1 ******** (14.5 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCAACATG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAACATG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:121123132-12112315 13 1.67e-05 atcatcctgg ccaacatg chr14:23400025-23400045 10 1.67e-05 ccagcctgg ccaacatg aaa chr17:7035572-7035592 12 1.67e-05 accagcctgg ccaacatg g chr16:16295490-16295510 6 1.67e-05 cctga ccaacatg gcaaaac chr8:126268324-126268344 11 1.67e-05 accatcctgg ccaacatg gt chr12:123205324-12320534 11 3.47e-05 accagcctgg ccaatatg gt chr5:176718460-176718480 5 3.47e-05 ttaa ccaatatg ctgaaaac chr3:156393427-156393447 7 4.95e-05 CCGCGG CCAACAGG AGGCGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAACATG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:121123132-12112315 1.7e-05 12_[+3] chr14:23400025-23400045 1.7e-05 9_[+3]_3 chr17:7035572-7035592 1.7e-05 11_[+3]_1 chr16:16295490-16295510 1.7e-05 5_[+3]_7 chr8:126268324-126268344 1.7e-05 10_[+3]_2 chr12:123205324-12320534 3.5e-05 10_[+3]_2 chr5:176718460-176718480 3.5e-05 4_[+3]_8 chr3:156393427-156393447 4.9e-05 6_[+3]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAACATG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCAACATG width=8 seqs=8 chr12:121123132-12112315 ( 13) CCAACATG 1 chr14:23400025-23400045 ( 10) CCAACATG 1 chr17:7035572-7035592 ( 12) CCAACATG 1 chr16:16295490-16295510 ( 6) CCAACATG 1 chr8:126268324-126268344 ( 11) CCAACATG 1 chr12:123205324-12320534 ( 11) CCAATATG 1 chr5:176718460-176718480 ( 5) CCAATATG 1 chr3:156393427-156393447 ( 7) CCAACAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAACATG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.66267 E= 1.4e+000 -965 207 -965 -965 -965 207 -965 -965 186 -965 -965 -965 186 -965 -965 -965 -965 165 -965 -5 186 -965 -965 -965 -965 -965 -87 176 -965 -965 213 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAACATG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 1.4e+000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.750000 0.000000 0.250000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.125000 0.875000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAACATG MEME-3 regular expression -------------------------------------------------------------------------------- CCAA[CT]ATG -------------------------------------------------------------------------------- Time 4.91 secs. ******************************************************************************** ******************************************************************************** MOTIF GAGRCRGG MEME-4 width = 8 sites = 12 llr = 104 E-value = 8.3e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGRCRGG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :a:633:: pos.-specific C 3:::7::: probability G 8:a4:7aa matrix T ::::1::: bits 2.1 * ** 1.9 ** ** 1.7 ** ** 1.5 ** ** Relative 1.3 *** ** Entropy 1.1 **** *** (12.5 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAGACGGG consensus C GAA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGRCRGG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:15357915-15357935 1 1.11e-05 . gagacggg gtttcaccat chr16:30471737-30471757 5 2.04e-05 ggcc gaggcggg cggatcat chr3:196184440-196184460 5 3.38e-05 agta gagacagg gtttctcc chrX:9971586-9971606 7 3.38e-05 ttagta gagacagg gtttca chr12:778721-778741 1 4.49e-05 . gaggcagg agaatcgctt chr2:203712800-203712820 10 5.78e-05 tggagtggg gagaaggg agg chr5:137225379-137225399 1 6.94e-05 . CAGACGGG AAAACTGAAG chr19:18451257-18451277 7 6.94e-05 attttg cagacggg gaaacg chr19:2475578-2475598 8 6.94e-05 CATTACT CAGACGGG AACAG chr17:46188764-46188784 12 8.00e-05 ttgggaggcc gaggaggg c chr1:206097758-206097778 12 1.44e-04 TTCTACAAAA GAGGAAGG T chr14:73763638-73763658 4 1.79e-04 gcc gaggtggg cggatcacc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGRCRGG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:15357915-15357935 1.1e-05 [+4]_12 chr16:30471737-30471757 2e-05 4_[+4]_8 chr3:196184440-196184460 3.4e-05 4_[+4]_8 chrX:9971586-9971606 3.4e-05 6_[+4]_6 chr12:778721-778741 4.5e-05 [+4]_12 chr2:203712800-203712820 5.8e-05 9_[+4]_3 chr5:137225379-137225399 6.9e-05 [+4]_12 chr19:18451257-18451277 6.9e-05 6_[+4]_6 chr19:2475578-2475598 6.9e-05 7_[+4]_5 chr17:46188764-46188784 8e-05 11_[+4]_1 chr1:206097758-206097778 0.00014 11_[+4]_1 chr14:73763638-73763658 0.00018 3_[+4]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGRCRGG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGRCRGG width=8 seqs=12 chr3:15357915-15357935 ( 1) GAGACGGG 1 chr16:30471737-30471757 ( 5) GAGGCGGG 1 chr3:196184440-196184460 ( 5) GAGACAGG 1 chrX:9971586-9971606 ( 7) GAGACAGG 1 chr12:778721-778741 ( 1) GAGGCAGG 1 chr2:203712800-203712820 ( 10) GAGAAGGG 1 chr5:137225379-137225399 ( 1) CAGACGGG 1 chr19:18451257-18451277 ( 7) CAGACGGG 1 chr19:2475578-2475598 ( 8) CAGACGGG 1 chr17:46188764-46188784 ( 12) GAGGAGGG 1 chr1:206097758-206097778 ( 12) GAGGAAGG 1 chr14:73763638-73763658 ( 4) GAGGTGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGRCRGG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.52481 E= 8.3e+000 -1023 7 172 -1023 186 -1023 -1023 -1023 -1023 -1023 213 -1023 108 -1023 87 -1023 -14 148 -1023 -163 28 -1023 155 -1023 -1023 -1023 213 -1023 -1023 -1023 213 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGRCRGG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 8.3e+000 0.000000 0.250000 0.750000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.583333 0.000000 0.416667 0.000000 0.250000 0.666667 0.000000 0.083333 0.333333 0.000000 0.666667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGRCRGG MEME-4 regular expression -------------------------------------------------------------------------------- [GC]AG[AG][CA][GA]GG -------------------------------------------------------------------------------- Time 5.68 secs. ******************************************************************************** ******************************************************************************** MOTIF CTAAAAAT MEME-5 width = 8 sites = 9 llr = 83 E-value = 1.4e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTAAAAAT MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::a9aaa: pos.-specific C 91:::::: probability G :1:1:::: matrix T 18:::::a bits 2.1 1.9 * **** 1.7 * **** 1.5 * ****** Relative 1.3 * ****** Entropy 1.1 ******** (13.3 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTAAAAAT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTAAAAAT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:50188568-50188588 9 2.50e-05 cgactcta ctaaaaat acaa chr6:107085788-107085808 2 2.50e-05 C CTAAAAAT GGTCTTAATG chr6:57285135-57285155 2 2.50e-05 a ctaaaaat acaaaaatta chr12:49111040-49111060 5 2.50e-05 tcta ctaaaaat acaaaatt chr7:38335875-38335895 12 2.50e-05 cctgcctcta ctaaaaat a chr6:3389330-3389350 8 4.71e-05 atctcta cgaaaaat ataaa chr10:97052873-97052893 6 9.11e-05 aaata ccaaaaat tagccgg chr1:204422684-204422704 1 9.11e-05 . CTAGAAAT AGAGGCTCAC chr20:46118434-46118454 12 1.18e-04 caaaaaaatt ttaaaaat t -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTAAAAAT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:50188568-50188588 2.5e-05 8_[+5]_4 chr6:107085788-107085808 2.5e-05 1_[+5]_11 chr6:57285135-57285155 2.5e-05 1_[+5]_11 chr12:49111040-49111060 2.5e-05 4_[+5]_8 chr7:38335875-38335895 2.5e-05 11_[+5]_1 chr6:3389330-3389350 4.7e-05 7_[+5]_5 chr10:97052873-97052893 9.1e-05 5_[+5]_7 chr1:204422684-204422704 9.1e-05 [+5]_12 chr20:46118434-46118454 0.00012 11_[+5]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTAAAAAT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTAAAAAT width=8 seqs=9 chr7:50188568-50188588 ( 9) CTAAAAAT 1 chr6:107085788-107085808 ( 2) CTAAAAAT 1 chr6:57285135-57285155 ( 2) CTAAAAAT 1 chr12:49111040-49111060 ( 5) CTAAAAAT 1 chr7:38335875-38335895 ( 12) CTAAAAAT 1 chr6:3389330-3389350 ( 8) CGAAAAAT 1 chr10:97052873-97052893 ( 6) CCAAAAAT 1 chr1:204422684-204422704 ( 1) CTAGAAAT 1 chr20:46118434-46118454 ( 12) TTAAAAAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTAAAAAT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.62696 E= 1.4e+002 -982 190 -982 -121 -982 -110 -104 159 186 -982 -982 -982 169 -982 -104 -982 186 -982 -982 -982 186 -982 -982 -982 186 -982 -982 -982 -982 -982 -982 195 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTAAAAAT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 1.4e+002 0.000000 0.888889 0.000000 0.111111 0.000000 0.111111 0.111111 0.777778 1.000000 0.000000 0.000000 0.000000 0.888889 0.000000 0.111111 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTAAAAAT MEME-5 regular expression -------------------------------------------------------------------------------- CTAAAAAT -------------------------------------------------------------------------------- Time 6.65 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:206097758-206097778 2.14e-02 20 chr22:25794761-25794781 3.69e-01 20 chr2:196271860-196271880 5.45e-02 20 chr7:127552064-127552084 5.03e-04 10_[+1(2.24e-05)]_2 chr1:61853714-61853734 3.72e-01 20 chr14:73763638-73763658 3.20e-02 20 chr1:63188636-63188656 2.85e-01 20 chr8:126268324-126268344 2.02e-05 2_[+1(3.54e-05)]_[+3(1.67e-05)]_2 chr7:38335875-38335895 7.50e-04 11_[+5(2.50e-05)]_1 chr1:172307275-172307295 4.85e-02 20 chr16:50099623-50099643 7.62e-01 20 chr19:39045352-39045372 1.23e-02 9_[+2(2.62e-05)]_3 chr5:40570969-40570989 1.36e-01 20 chr3:156393427-156393447 4.81e-03 6_[+3(4.95e-05)]_6 chr10:122367411-12236743 5.96e-01 20 chr12:778721-778741 8.93e-03 [+4(4.49e-05)]_12 chr2:131581770-131581790 7.20e-01 20 chr7:115790857-115790877 5.94e-01 20 chr6:124246678-124246698 5.11e-01 20 chr3:56994344-56994364 9.06e-01 20 chr10:122365873-12236589 6.68e-01 20 chr8:95903596-95903616 6.70e-02 20 chr1:181103494-181103514 7.40e-01 20 chr9:34523148-34523168 9.11e-02 20 chr19:4968513-4968533 6.93e-01 20 chr18:4287457-4287477 5.16e-01 20 chr10:93556685-93556705 5.91e-01 20 chr19:7213856-7213876 3.05e-01 20 chr4:71527270-71527290 9.09e-02 20 chr3:196139654-196139674 5.50e-01 20 chr1:15558612-15558632 1.66e-01 20 chr11:121078410-12107843 6.02e-01 20 chr13:70664281-70664301 9.54e-02 20 chr16:18604407-18604427 2.64e-02 11_[+2(5.03e-05)]_1 chr3:194865254-194865274 2.66e-01 20 chr17:72413643-72413663 1.93e-01 20 chr1:217668750-217668770 3.15e-01 20 chr19:43019703-43019723 7.82e-01 20 chr7:69308781-69308801 1.95e-01 20 chr17:7145883-7145903 8.09e-01 20 chr4:78551234-78551254 4.53e-01 20 chr18:58316456-58316476 8.23e-02 20 chr1:192609289-192609309 9.85e-01 20 chr21:34746906-34746926 1.15e-01 20 chr15:80193553-80193573 1.41e-02 20 chr13:45991332-45991352 6.01e-02 20 chr19:40909312-40909332 8.08e-01 20 chr14:93548802-93548822 5.71e-01 20 chr8:101156235-101156255 2.15e-03 8_[+2(6.55e-05)]_4 chr5:116099482-116099502 3.37e-03 10_[+1(4.78e-05)]_2 chrX:1610689-1610709 1.00e+00 20 chr19:7246800-7246820 4.59e-01 20 chr16:16295490-16295510 1.09e-03 5_[+3(1.67e-05)]_7 chr2:208772041-208772061 3.04e-01 20 chr12:103575183-10357520 8.99e-01 20 chr1:80176771-80176791 7.52e-01 20 chr12:122029239-12202925 2.22e-01 20 chr7:50185820-50185840 2.62e-02 20 chr2:191471250-191471270 2.12e-01 20 chr10:64391890-64391910 3.33e-01 20 chr17:38309191-38309211 8.32e-01 20 chr19:11647141-11647161 9.35e-01 20 chr16:17123643-17123663 9.93e-01 20 chr6:22358139-22358159 1.67e-01 20 chr10:125866215-12586623 9.70e-01 20 chr10:15165320-15165340 4.86e-01 20 chr8:8774811-8774831 6.03e-01 20 chr5:124338637-124338657 1.52e-01 20 chr19:14328094-14328114 6.59e-01 20 chr22:38902439-38902459 4.76e-01 20 chr11:72231020-72231040 7.25e-01 20 chr19:921628-921648 2.42e-01 20 chr18:650561-650581 5.04e-01 20 chr11:123350382-12335040 7.33e-01 20 chr10:73078790-73078810 6.50e-02 20 chr8:61429042-61429062 5.88e-01 20 chr22:18484819-18484839 6.07e-01 20 chr1:12138837-12138857 6.08e-01 20 chr1:11025000-11025020 4.05e-01 20 chr4:24586618-24586638 7.68e-01 20 chr1:235144905-235144925 2.95e-01 20 chr22:43112696-43112716 7.64e-01 20 chr7:2442731-2442751 6.66e-02 20 chr2:65632243-65632263 4.98e-01 20 chr9:73923540-73923560 9.10e-01 20 chr1:192595800-192595820 7.10e-01 20 chr9:80850718-80850738 3.54e-04 5_[+1(2.24e-05)]_7 chr2:157933449-157933469 6.68e-01 20 chr1:24863216-24863236 3.74e-01 20 chr16:4364396-4364416 8.90e-01 20 chr11:118741599-11874161 4.71e-01 20 chr4:150960010-150960030 2.99e-01 20 chr9:71581754-71581774 9.12e-01 20 chr17:72279547-72279567 5.39e-04 1_[+1(1.15e-05)]_11 chr3:175207425-175207445 8.22e-01 20 chr2:196521864-196521884 4.51e-01 20 chr20:46118434-46118454 1.65e-01 20 chr19:6772279-6772299 8.37e-01 20 chr15:85873021-85873041 2.21e-01 20 chr1:117151697-117151717 3.79e-01 20 chr7:30254553-30254573 1.03e-02 20 chr9:132778811-132778831 1.52e-01 20 chr17:7035572-7035592 1.66e-07 3_[+1(1.15e-05)]_[+3(1.67e-05)]_1 chr6:133194248-133194268 7.45e-01 20 chr1:157623086-157623106 7.74e-01 20 chrX:40730435-40730455 4.71e-01 20 chr12:46062969-46062989 9.22e-01 20 chr2:197042422-197042442 5.70e-01 20 chr1:31238570-31238590 8.32e-01 20 chr2:109024700-109024720 7.87e-01 20 chr1:25349851-25349871 8.46e-02 20 chr3:56821851-56821871 4.98e-01 20 chr21:35578530-35578550 5.27e-01 20 chr12:102335515-10233553 9.54e-01 20 chr1:241648619-241648639 5.20e-01 20 chr6:30726408-30726428 3.44e-02 20 chr9:126031142-126031162 1.03e-01 20 chr10:97989718-97989738 2.05e-01 20 chr14:23400025-23400045 2.10e-06 1_[+1(1.15e-05)]_[+3(1.67e-05)]_3 chr13:36992276-36992296 9.97e-01 20 chr17:1162448-1162468 8.89e-04 10_[+1(2.24e-05)]_2 chr5:176718460-176718480 2.35e-03 4_[+3(3.47e-05)]_8 chr4:6965768-6965788 1.18e-02 20 chr12:49111040-49111060 3.94e-02 4_[+5(2.50e-05)]_8 chr6:3389330-3389350 6.71e-02 7_[+5(4.71e-05)]_5 chr18:62047595-62047615 8.56e-01 20 chr17:29025297-29025317 2.28e-01 20 chr19:2475578-2475598 5.59e-03 7_[+4(6.94e-05)]_5 chr19:54605766-54605786 3.56e-01 20 chr10:81009380-81009400 9.98e-01 20 chr22:29563195-29563215 1.09e-03 8_[+1(5.88e-05)]_4 chr14:76139909-76139929 4.22e-01 20 chr6:37530349-37530369 7.50e-02 20 chr20:33003161-33003181 7.51e-04 20 chr9:127049131-127049151 4.99e-01 20 chr22:38783099-38783119 8.13e-01 20 chr14:23274035-23274055 4.87e-01 20 chr11:61447791-61447811 5.98e-01 20 chr3:160167019-160167039 7.94e-01 20 chr3:37216388-37216408 5.12e-01 20 chr12:123205324-12320534 3.09e-07 2_[+1(1.15e-05)]_[+3(3.47e-05)]_2 chr1:21258914-21258934 6.33e-02 20 chr5:180615103-180615123 6.20e-01 20 chr9:126980025-126980045 3.84e-03 20 chr22:50050649-50050669 3.91e-02 20 chr11:116933965-11693398 6.41e-01 20 chr4:111405365-111405385 6.87e-01 20 chr2:203712800-203712820 4.25e-02 9_[+4(5.78e-05)]_3 chr8:60489527-60489547 1.30e-01 20 chr3:133285900-133285920 1.13e-01 20 chr2:71558518-71558538 4.89e-02 20 chr12:109248878-10924889 3.00e-01 20 chr7:74058454-74058474 7.52e-01 20 chr3:25810620-25810640 9.86e-01 20 chr21:32534499-32534519 1.21e-01 20 chr19:14116351-14116371 3.00e-01 20 chr5:55367119-55367139 5.76e-01 20 chr18:38605846-38605866 5.42e-01 20 chr9:127019923-127019943 6.59e-01 20 chr1:204422684-204422704 4.22e-02 [+5(9.11e-05)]_12 chr3:108299127-108299147 9.04e-01 20 chr19:1103014-1103034 2.86e-01 20 chr6:34360457-34360477 3.59e-01 20 chr2:204736391-204736411 2.68e-01 20 chr10:112626102-11262612 3.31e-01 20 chr8:105187952-105187972 3.31e-01 20 chrX:9971586-9971606 1.54e-02 6_[+4(3.38e-05)]_6 chr6:141784964-141784984 3.39e-01 20 chr7:5622207-5622227 4.46e-01 20 chr14:94276008-94276028 7.62e-01 20 chr2:145188328-145188348 5.73e-01 20 chr17:33668878-33668898 7.50e-01 20 chr20:32361453-32361473 6.76e-02 20 chr3:183254344-183254364 1.93e-01 20 chr19:7766513-7766533 1.39e-02 12_[+1(9.34e-05)] chr6:15613327-15613347 5.78e-02 20 chr2:111920442-111920462 2.86e-01 20 chr12:1059521-1059541 6.22e-01 20 chr5:158179570-158179590 1.99e-01 20 chr20:32891452-32891472 5.59e-02 20 chr17:78884823-78884843 5.37e-01 20 chr6:57285135-57285155 3.95e-02 1_[+5(2.50e-05)]_11 chr1:23442155-23442175 5.69e-01 20 chr4:123554016-123554036 4.46e-01 20 chr6:108766583-108766603 8.08e-01 20 chr9:112161699-112161719 3.29e-01 20 chr6:107085788-107085808 8.15e-03 1_[+5(2.50e-05)]_11 chr11:125439017-12543903 1.97e-01 20 chr1:45936168-45936188 2.71e-01 20 chr15:40393556-40393576 9.14e-01 20 chr19:14691539-14691559 4.14e-01 20 chr3:15357915-15357935 1.75e-03 [+4(1.11e-05)]_12 chr3:196184440-196184460 1.54e-02 4_[+4(3.38e-05)]_8 chr12:1107342-1107362 6.81e-01 20 chr10:97416498-97416518 2.03e-01 20 chr6:149373536-149373556 6.09e-01 20 chr19:18451257-18451277 9.86e-03 6_[+4(6.94e-05)]_6 chr11:64053187-64053207 6.38e-01 20 chr4:119606122-119606142 2.10e-01 20 chr14:73758614-73758634 1.13e-01 20 chr19:2051643-2051663 2.84e-01 20 chr3:175195785-175195805 8.31e-01 20 chr6:28866136-28866156 2.34e-04 1_[+2(2.62e-05)]_11 chr14:95623818-95623838 8.35e-01 20 chr19:16251972-16251992 2.18e-01 20 chr11:130724541-13072456 5.60e-01 20 chr1:55088644-55088664 1.06e-05 6_[+1(1.15e-05)]_6 chr2:174212791-174212811 6.54e-01 20 chr13:74542163-74542183 2.22e-01 20 chr12:121123132-12112315 2.02e-05 4_[+1(3.54e-05)]_[+3(1.67e-05)] chr4:22709192-22709212 1.52e-01 20 chr18:44646996-44647016 8.41e-01 20 chr7:50188568-50188588 4.12e-02 8_[+5(2.50e-05)]_4 chr3:118529333-118529353 5.77e-01 20 chr7:5437149-5437169 1.52e-01 20 chr5:137225379-137225399 3.27e-03 [+4(6.94e-05)]_12 chr12:6408935-6408955 4.35e-01 20 chr2:80753563-80753583 6.54e-03 8_[+2(2.62e-05)]_4 chr8:2556834-2556854 1.69e-02 20 chr10:97052873-97052893 2.20e-02 5_[+5(9.11e-05)]_7 chr2:46202331-46202351 9.88e-01 20 chr21:45206573-45206593 7.43e-01 20 chr6:15732860-15732880 4.40e-01 20 chr20:46044550-46044570 2.59e-01 20 chr6:102434565-102434585 6.78e-01 20 chr17:40713745-40713765 1.11e-01 20 chr8:21777133-21777153 8.92e-01 20 chr16:10980672-10980692 4.16e-01 20 chr4:3357258-3357278 5.70e-01 20 chr19:36193003-36193023 9.18e-02 20 chr7:116323994-116324014 5.11e-01 20 chr19:38469493-38469513 1.52e-01 20 chr15:66219521-66219541 6.07e-01 20 chr16:47052567-47052587 6.31e-02 20 chr6:157390063-157390083 8.99e-01 20 chr16:89253381-89253401 9.89e-01 20 chr17:56415996-56416016 3.89e-01 20 chr19:46209687-46209707 9.14e-02 20 chr4:40578932-40578952 7.88e-01 20 chr17:46188764-46188784 5.86e-02 11_[+4(8.00e-05)]_1 chr3:110455335-110455355 1.02e-01 20 chr11:114490573-11449059 2.20e-01 20 chr19:17445638-17445658 2.94e-01 20 chr16:30471737-30471757 7.16e-03 4_[+4(2.04e-05)]_8 chr12:40707930-40707950 2.25e-01 20 chr2:216705453-216705473 1.48e-01 20 chr10:12306123-12306143 9.94e-04 7_[+1(2.24e-05)]_5 chr6:30875563-30875583 1.32e-01 20 chr11:45838997-45839017 6.08e-01 20 chr1:53833999-53834019 5.77e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n04.farnam.hpc.yale.internal ********************************************************************************