******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/ZNF143.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr19:49148214-49148234 1.0000 20 chr17:7118444-7118464 1.0000 20 chr19:49013951-49013971 1.0000 20 chr19:49310056-49310076 1.0000 20 chr19:54682399-54682419 1.0000 20 chr19:49469220-49469240 1.0000 20 chr2:86332718-86332738 1.0000 20 chr19:507921-507941 1.0000 20 chr19:48866467-48866487 1.0000 20 chr19:55817022-55817042 1.0000 20 chr6:43215054-43215074 1.0000 20 chr19:49248641-49248661 1.0000 20 chr19:49250521-49250541 1.0000 20 chr16:46918163-46918183 1.0000 20 chr19:49228284-49228304 1.0000 20 chr19:50651567-50651587 1.0000 20 chr19:49224378-49224398 1.0000 20 chr19:49416558-49416578 1.0000 20 chr19:49362048-49362068 1.0000 20 chr10:38383204-38383224 1.0000 20 chr5:178286920-178286940 1.0000 20 chr16:30103290-30103310 1.0000 20 chr19:55690546-55690566 1.0000 20 chr19:45988736-45988756 1.0000 20 chr4:2538121-2538141 1.0000 20 chr2:128644009-128644029 1.0000 20 chr22:41840495-41840515 1.0000 20 chr6:11093968-11093988 1.0000 20 chr13:30881258-30881278 1.0000 20 chr6:52929659-52929679 1.0000 20 chr11:114310103-11431012 1.0000 20 chr10:89102634-89102654 1.0000 20 chr6:157801114-157801134 1.0000 20 chr4:18023819-18023839 1.0000 20 chr19:38397780-38397800 1.0000 20 chr3:14166393-14166413 1.0000 20 chr2:27319272-27319292 1.0000 20 chr10:104262616-10426263 1.0000 20 chr19:52097772-52097792 1.0000 20 chr10:81586531-81586551 1.0000 20 chr1:6673656-6673676 1.0000 20 chr19:49385166-49385186 1.0000 20 chr19:48907041-48907061 1.0000 20 chr10:43048361-43048381 1.0000 20 chr5:57878806-57878826 1.0000 20 chr10:124134055-12413407 1.0000 20 chr14:59655303-59655323 1.0000 20 chr16:31106275-31106295 1.0000 20 chr3:183735790-183735810 1.0000 20 chr16:68482635-68482655 1.0000 20 chr11:134123345-13412336 1.0000 20 chr17:40559701-40559721 1.0000 20 chr7:150689979-150689999 1.0000 20 chr16:30908514-30908534 1.0000 20 chr7:63767770-63767790 1.0000 20 chr16:70488368-70488388 1.0000 20 chr19:46027188-46027208 1.0000 20 chr19:48833463-48833483 1.0000 20 chr4:8160700-8160720 1.0000 20 chr1:224544474-224544494 1.0000 20 chr19:45908764-45908784 1.0000 20 chr3:69788472-69788492 1.0000 20 chr3:127771070-127771090 1.0000 20 chr1:47799928-47799948 1.0000 20 chr11:60681361-60681381 1.0000 20 chr19:56915646-56915666 1.0000 20 chr1:2457675-2457695 1.0000 20 chr6:43597127-43597147 1.0000 20 chr19:55709087-55709107 1.0000 20 chr19:50836865-50836885 1.0000 20 chr16:58426749-58426769 1.0000 20 chr1:154979460-154979480 1.0000 20 chr2:54950571-54950591 1.0000 20 chr19:42463570-42463590 1.0000 20 chr1:147142698-147142718 1.0000 20 chr11:64578073-64578093 1.0000 20 chr9:131965209-131965229 1.0000 20 chr19:50163196-50163216 1.0000 20 chr2:2617309-2617329 1.0000 20 chr1:38412733-38412753 1.0000 20 chr10:92631687-92631707 1.0000 20 chrX:129116497-129116517 1.0000 20 chr8:124054130-124054150 1.0000 20 chr19:41084584-41084604 1.0000 20 chr12:133532907-13353292 1.0000 20 chr19:48673779-48673799 1.0000 20 chr1:244816079-244816099 1.0000 20 chr18:9913631-9913651 1.0000 20 chr2:38893027-38893047 1.0000 20 chr10:44144360-44144380 1.0000 20 chr16:4321878-4321898 1.0000 20 chr9:97021521-97021541 1.0000 20 chr9:99616849-99616869 1.0000 20 chr19:49479580-49479600 1.0000 20 chr19:1905283-1905303 1.0000 20 chr5:138775227-138775247 1.0000 20 chr1:1051578-1051598 1.0000 20 chr8:82755014-82755034 1.0000 20 chr1:247095537-247095557 1.0000 20 chr19:55629156-55629176 1.0000 20 chr10:111985617-11198563 1.0000 20 chr7:102389339-102389359 1.0000 20 chrX:106045802-106045822 1.0000 20 chr5:178157741-178157761 1.0000 20 chr16:577581-577601 1.0000 20 chr21:15755569-15755589 1.0000 20 chrX:134478651-134478671 1.0000 20 chr19:48922707-48922727 1.0000 20 chr17:7358856-7358876 1.0000 20 chr1:243419265-243419285 1.0000 20 chr19:19887321-19887341 1.0000 20 chr11:66138903-66138923 1.0000 20 chr3:101443695-101443715 1.0000 20 chr19:44809227-44809247 1.0000 20 chr17:73937189-73937209 1.0000 20 chr14:90798190-90798210 1.0000 20 chr17:73780757-73780777 1.0000 20 chr1:93646136-93646156 1.0000 20 chr16:70473243-70473263 1.0000 20 chr20:62694393-62694413 1.0000 20 chr12:56710156-56710176 1.0000 20 chr12:122985593-12298561 1.0000 20 chr19:2457038-2457058 1.0000 20 chr19:36208479-36208499 1.0000 20 chr17:76250666-76250686 1.0000 20 chr20:48732516-48732536 1.0000 20 chr19:38270252-38270272 1.0000 20 chr14:77787640-77787660 1.0000 20 chr19:49404499-49404519 1.0000 20 chr7:150755135-150755155 1.0000 20 chr7:100888079-100888099 1.0000 20 chr8:144699833-144699853 1.0000 20 chr5:55008195-55008215 1.0000 20 chr6:5003936-5003956 1.0000 20 chrX:48980177-48980197 1.0000 20 chr7:76751722-76751742 1.0000 20 chr21:35747767-35747787 1.0000 20 chr19:54618752-54618772 1.0000 20 chr14:65569294-65569314 1.0000 20 chr15:75182340-75182360 1.0000 20 chr8:119634239-119634259 1.0000 20 chr17:40950749-40950769 1.0000 20 chr21:35288175-35288195 1.0000 20 chr1:115300174-115300194 1.0000 20 chr11:46134709-46134729 1.0000 20 chr2:172543924-172543944 1.0000 20 chr20:23402187-23402207 1.0000 20 chr19:44556029-44556049 1.0000 20 chr5:74807702-74807722 1.0000 20 chr3:32147935-32147955 1.0000 20 chr2:172290722-172290742 1.0000 20 chr11:74109868-74109888 1.0000 20 chr13:26828026-26828046 1.0000 20 chr9:102861386-102861406 1.0000 20 chr15:64386196-64386216 1.0000 20 chr17:7123162-7123182 1.0000 20 chr1:45806131-45806151 1.0000 20 chr6:116989966-116989986 1.0000 20 chr19:10828095-10828115 1.0000 20 chr13:52158009-52158029 1.0000 20 chr6:10147385-10147405 1.0000 20 chr5:173043771-173043791 1.0000 20 chr7:74071874-74071894 1.0000 20 chr11:208744-208764 1.0000 20 chr1:95538261-95538281 1.0000 20 chr17:4634629-4634649 1.0000 20 chr12:104323517-10432353 1.0000 20 chr12:861549-861569 1.0000 20 chrX:155110885-155110905 1.0000 20 chr19:44488267-44488287 1.0000 20 chr15:41099736-41099756 1.0000 20 chr7:150924408-150924428 1.0000 20 chr19:57946583-57946603 1.0000 20 chr17:46178887-46178907 1.0000 20 chr16:67840620-67840640 1.0000 20 chr8:145550606-145550626 1.0000 20 chr7:120590645-120590665 1.0000 20 chrX:130037332-130037352 1.0000 20 chr9:138853306-138853326 1.0000 20 chr12:32832112-32832132 1.0000 20 chr17:15602941-15602961 1.0000 20 chr3:4344996-4345016 1.0000 20 chr9:95527283-95527303 1.0000 20 chr19:1021309-1021329 1.0000 20 chrX:106362071-106362091 1.0000 20 chr11:16760105-16760125 1.0000 20 chr19:58838324-58838344 1.0000 20 chr16:4817263-4817283 1.0000 20 chr2:85645700-85645720 1.0000 20 chr16:30786759-30786779 1.0000 20 chr14:81408152-81408172 1.0000 20 chr11:77899763-77899783 1.0000 20 chr1:235667906-235667926 1.0000 20 chr20:47805094-47805114 1.0000 20 chr2:136288430-136288450 1.0000 20 chr1:23695383-23695403 1.0000 20 chr18:60382296-60382316 1.0000 20 chr7:75988655-75988675 1.0000 20 chr19:55831310-55831330 1.0000 20 chr22:30163129-30163149 1.0000 20 chr2:39005311-39005331 1.0000 20 chr19:49947094-49947114 1.0000 20 chr16:30934648-30934668 1.0000 20 chr10:74114317-74114337 1.0000 20 chr7:93633716-93633736 1.0000 20 chr1:107599278-107599298 1.0000 20 chr9:134955296-134955316 1.0000 20 chr6:42531635-42531655 1.0000 20 chr2:95873213-95873233 1.0000 20 chr16:15150065-15150085 1.0000 20 chr7:33102722-33102742 1.0000 20 chr1:154842907-154842927 1.0000 20 chr3:67048548-67048568 1.0000 20 chr6:31866342-31866362 1.0000 20 chr12:133706895-13370691 1.0000 20 chr12:110151347-11015136 1.0000 20 chr11:450264-450284 1.0000 20 chr2:68694521-68694541 1.0000 20 chr19:28284834-28284854 1.0000 20 chr1:205744633-205744653 1.0000 20 chr16:68573091-68573111 1.0000 20 chr19:50030999-50031019 1.0000 20 chr2:170430435-170430455 1.0000 20 chr5:171433767-171433787 1.0000 20 chr3:46037353-46037373 1.0000 20 chr11:65488239-65488259 1.0000 20 chr18:71815687-71815707 1.0000 20 chr6:31633718-31633738 1.0000 20 chr19:47354278-47354298 1.0000 20 chr14:36295418-36295438 1.0000 20 chr7:76178503-76178523 1.0000 20 chr12:13197296-13197316 1.0000 20 chr3:75690345-75690365 1.0000 20 chr19:55815829-55815849 1.0000 20 chr17:7094978-7094998 1.0000 20 chr12:67662619-67662639 1.0000 20 chr15:52121820-52121840 1.0000 20 chr12:53895278-53895298 1.0000 20 chr10:97667913-97667933 1.0000 20 chr19:54024141-54024161 1.0000 20 chr8:124084814-124084834 1.0000 20 chr15:55700578-55700598 1.0000 20 chr19:44617448-44617468 1.0000 20 chr16:686401-686421 1.0000 20 chr1:45279525-45279545 1.0000 20 chr19:40315325-40315345 1.0000 20 chr3:61235797-61235817 1.0000 20 chr3:50126288-50126308 1.0000 20 chrX:149736838-149736858 1.0000 20 chr4:104021043-104021063 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_ZNF143/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/ZNF143.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.191 C 0.316 G 0.323 T 0.171 Background letter frequencies (from file dataset with add-one prior applied): A 0.191 C 0.316 G 0.323 T 0.171 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TGTAGTYY MEME-1 width = 8 sites = 22 llr = 190 E-value = 3.7e-012 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTAGTYY MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::18:::1 pos.-specific C ::::::45 probability G :a22a::: matrix T a:7::a64 bits 2.6 * * 2.3 * * 2.0 * * 1.8 * * Relative 1.5 ** * * Entropy 1.3 ******* (12.5 bits) 1.0 ******* 0.8 ******* 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TGTAGTTC consensus G CT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTAGTYY MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr4:104021043-104021063 4 2.91e-06 ATT TGTAGTTT CCCTGCTTT chr19:38270252-38270272 1 2.91e-06 . TGTAGTTT AAGCCTAAAG chr3:69788472-69788492 3 2.91e-06 GC TGTAGTTT TCGTGGGAGC chr6:31866342-31866362 3 8.30e-06 AC TGTAGTTC TCTTTGGTTA chr16:30786759-30786779 12 8.30e-06 TCCTGGGAAG TGTAGTTC C chr11:74109868-74109888 1 8.30e-06 . TGTAGTTC TTTCCTTTGT chr2:172290722-172290742 2 8.30e-06 T TGTAGTTC CTGGGAGAAG chr8:119634239-119634259 5 8.30e-06 GAAG TGTAGTTC CCTCCCTT chr13:26828026-26828046 4 1.37e-05 TAT TGTAGTCT GGGGCCCGG chr20:48732516-48732536 2 1.37e-05 T TGTAGTCT AGCGTTGGCG chr1:2457675-2457695 11 2.69e-05 TGCCGGTAGC TGTAGTCC GG chr7:102389339-102389359 7 5.35e-05 GGGAAA TGTGGTTT CTAAGA chr11:64578073-64578093 13 8.75e-05 CGCCGGGAAG TGGAGTCT chr5:178157741-178157761 4 1.24e-04 AAA TGGAGTCC ACGAGAGGA chr16:30908514-30908534 8 1.24e-04 CGGGAAA TGGAGTCC CTCCC chr16:4817263-4817283 12 1.36e-04 CGACGTGCAC TGTGGTTA A chr11:46134709-46134729 9 1.40e-04 CTCTAATC TGAAGTTA AGCA chr17:73780757-73780777 3 1.62e-04 AT TGTGGTCC TGTGCTTTGC chr5:74807702-74807722 13 1.83e-04 TCCTGGGAGT TGTAGTCG chr1:95538261-95538281 6 2.04e-04 CACTC TGGGGTTT GTAGTGA chr19:55709087-55709107 11 2.46e-04 CTTCAGCTTA TGAAGTCA TG chr3:50126288-50126308 13 3.83e-04 CTTCGAGGAT TGGACTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTAGTYY MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:104021043-104021063 2.9e-06 3_[+1]_9 chr19:38270252-38270272 2.9e-06 [+1]_12 chr3:69788472-69788492 2.9e-06 2_[+1]_10 chr6:31866342-31866362 8.3e-06 2_[+1]_10 chr16:30786759-30786779 8.3e-06 11_[+1]_1 chr11:74109868-74109888 8.3e-06 [+1]_12 chr2:172290722-172290742 8.3e-06 1_[+1]_11 chr8:119634239-119634259 8.3e-06 4_[+1]_8 chr13:26828026-26828046 1.4e-05 3_[+1]_9 chr20:48732516-48732536 1.4e-05 1_[+1]_11 chr1:2457675-2457695 2.7e-05 10_[+1]_2 chr7:102389339-102389359 5.3e-05 6_[+1]_6 chr11:64578073-64578093 8.8e-05 12_[+1] chr5:178157741-178157761 0.00012 3_[+1]_9 chr16:30908514-30908534 0.00012 7_[+1]_5 chr16:4817263-4817283 0.00014 11_[+1]_1 chr11:46134709-46134729 0.00014 8_[+1]_4 chr17:73780757-73780777 0.00016 2_[+1]_10 chr5:74807702-74807722 0.00018 12_[+1] chr1:95538261-95538281 0.0002 5_[+1]_7 chr19:55709087-55709107 0.00025 10_[+1]_2 chr3:50126288-50126308 0.00038 12_[+1] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTAGTYY MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTAGTYY width=8 seqs=22 chr4:104021043-104021063 ( 4) TGTAGTTT 1 chr19:38270252-38270272 ( 1) TGTAGTTT 1 chr3:69788472-69788492 ( 3) TGTAGTTT 1 chr6:31866342-31866362 ( 3) TGTAGTTC 1 chr16:30786759-30786779 ( 12) TGTAGTTC 1 chr11:74109868-74109888 ( 1) TGTAGTTC 1 chr2:172290722-172290742 ( 2) TGTAGTTC 1 chr8:119634239-119634259 ( 5) TGTAGTTC 1 chr13:26828026-26828046 ( 4) TGTAGTCT 1 chr20:48732516-48732536 ( 2) TGTAGTCT 1 chr1:2457675-2457695 ( 11) TGTAGTCC 1 chr7:102389339-102389359 ( 7) TGTGGTTT 1 chr11:64578073-64578093 ( 13) TGGAGTCT 1 chr5:178157741-178157761 ( 4) TGGAGTCC 1 chr16:30908514-30908534 ( 8) TGGAGTCC 1 chr16:4817263-4817283 ( 12) TGTGGTTA 1 chr11:46134709-46134729 ( 9) TGAAGTTA 1 chr17:73780757-73780777 ( 3) TGTGGTCC 1 chr5:74807702-74807722 ( 13) TGTAGTCG 1 chr1:95538261-95538281 ( 6) TGGGGTTT 1 chr19:55709087-55709107 ( 11) TGAAGTCA 1 chr3:50126288-50126308 ( 13) TGGACTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTAGTYY MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.22846 E= 3.7e-012 -1110 -1110 -1110 255 -1110 -1110 163 -1110 -107 -1110 -50 200 210 -1110 -83 -1110 -1110 -279 156 -1110 -1110 -1110 -1110 255 -1110 37 -1110 179 -49 53 -282 109 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTAGTYY MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 3.7e-012 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.090909 0.000000 0.227273 0.681818 0.818182 0.000000 0.181818 0.000000 0.000000 0.045455 0.954545 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.409091 0.000000 0.590909 0.136364 0.454545 0.045455 0.363636 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTAGTYY MEME-1 regular expression -------------------------------------------------------------------------------- TG[TG]AGT[TC][CT] -------------------------------------------------------------------------------- Time 3.41 secs. ******************************************************************************** ******************************************************************************** MOTIF RRACTACA MEME-2 width = 8 sites = 16 llr = 154 E-value = 2.1e-011 ******************************************************************************** -------------------------------------------------------------------------------- Motif RRACTACA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 45a::9:9 pos.-specific C :::a11a: probability G 65:::::: matrix T ::::9::1 bits 2.6 2.3 * 2.0 * ** * 1.8 ****** Relative 1.5 ****** Entropy 1.3 ****** (13.9 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GAACTACA consensus AG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRACTACA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr16:686401-686421 12 4.34e-06 GGAAGCTGAT AAACTACA A chr5:173043771-173043791 1 4.34e-06 . AAACTACA ACTCCCGGCA chr2:2617309-2617329 10 4.34e-06 AGCAAGCGT aaactaca atc chr14:36295418-36295438 11 1.17e-05 TGAGACCTAC GAACTACA AC chr19:57946583-57946603 11 1.17e-05 AGCAACGTGA GAACTACA TT chr12:133532907-13353292 11 1.17e-05 GCTCGCGCTG GAACTACA CT chr13:30881258-30881278 13 1.17e-05 AGGAGTCGCT GAACTACA chr17:46178887-46178907 10 1.90e-05 GTCTGTCCA AGACTACA AGG chr1:115300174-115300194 10 1.90e-05 GAAGCAGCC AGACTACA GAT chr8:82755014-82755034 11 1.90e-05 AAACAGGAGA AGACTACA AT chr19:28284834-28284854 8 3.14e-05 GGCGGCC GGACTACA ATCCC chr11:450264-450284 1 3.14e-05 . GGACTACA AGCCCCACAA chr1:243419265-243419285 9 3.14e-05 GAACGTGA GGACTACA ACTC chr1:235667906-235667926 11 6.37e-05 CGCGGTTTAG AAACCACA TT chr7:150924408-150924428 9 7.48e-05 CGCCTTGA GGACTACT ATGT chr5:178286920-178286940 11 1.47e-04 GTCCTCCCGT GGACTCCA TT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRACTACA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:686401-686421 4.3e-06 11_[+2]_1 chr5:173043771-173043791 4.3e-06 [+2]_12 chr2:2617309-2617329 4.3e-06 9_[+2]_3 chr14:36295418-36295438 1.2e-05 10_[+2]_2 chr19:57946583-57946603 1.2e-05 10_[+2]_2 chr12:133532907-13353292 1.2e-05 10_[+2]_2 chr13:30881258-30881278 1.2e-05 12_[+2] chr17:46178887-46178907 1.9e-05 9_[+2]_3 chr1:115300174-115300194 1.9e-05 9_[+2]_3 chr8:82755014-82755034 1.9e-05 10_[+2]_2 chr19:28284834-28284854 3.1e-05 7_[+2]_5 chr11:450264-450284 3.1e-05 [+2]_12 chr1:243419265-243419285 3.1e-05 8_[+2]_4 chr1:235667906-235667926 6.4e-05 10_[+2]_2 chr7:150924408-150924428 7.5e-05 8_[+2]_4 chr5:178286920-178286940 0.00015 10_[+2]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRACTACA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RRACTACA width=8 seqs=16 chr16:686401-686421 ( 12) AAACTACA 1 chr5:173043771-173043791 ( 1) AAACTACA 1 chr2:2617309-2617329 ( 10) AAACTACA 1 chr14:36295418-36295438 ( 11) GAACTACA 1 chr19:57946583-57946603 ( 11) GAACTACA 1 chr12:133532907-13353292 ( 11) GAACTACA 1 chr13:30881258-30881278 ( 13) GAACTACA 1 chr17:46178887-46178907 ( 10) AGACTACA 1 chr1:115300174-115300194 ( 10) AGACTACA 1 chr8:82755014-82755034 ( 11) AGACTACA 1 chr19:28284834-28284854 ( 8) GGACTACA 1 chr11:450264-450284 ( 1) GGACTACA 1 chr1:243419265-243419285 ( 9) GGACTACA 1 chr1:235667906-235667926 ( 11) AAACCACA 1 chr7:150924408-150924428 ( 9) GGACTACT 1 chr5:178286920-178286940 ( 11) GGACTCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRACTACA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.6591 E= 2.1e-011 119 -1064 80 -1064 139 -1064 63 -1064 239 -1064 -1064 -1064 -1064 166 -1064 -1064 -1064 -233 -1064 246 229 -233 -1064 -1064 -1064 166 -1064 -1064 229 -1064 -1064 -145 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRACTACA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 2.1e-011 0.437500 0.000000 0.562500 0.000000 0.500000 0.000000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.062500 0.000000 0.937500 0.937500 0.062500 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.937500 0.000000 0.000000 0.062500 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRACTACA MEME-2 regular expression -------------------------------------------------------------------------------- [GA][AG]ACTACA -------------------------------------------------------------------------------- Time 4.20 secs. ******************************************************************************** ******************************************************************************** MOTIF TBCTGGGA MEME-3 width = 8 sites = 22 llr = 165 E-value = 6.8e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TBCTGGGA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::a pos.-specific C 2472:::: probability G :21:9aa: matrix T 84181::: bits 2.6 2.3 2.0 * 1.8 * * Relative 1.5 * * *** Entropy 1.3 * ***** (10.8 bits) 1.0 * ***** 0.8 * ***** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TCCTGGGA consensus T C sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TBCTGGGA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:27319272-27319292 1 1.02e-05 . TTCTGGGA AGTGTAGGCT chr6:31633718-31633738 10 2.90e-05 CGCGGGTCA TCCTGGGA TTG chr16:30786759-30786779 2 2.90e-05 A TCCTGGGA AGTGTAGTTC chrX:155110885-155110905 1 2.90e-05 . TCCTGGGA AGTGCGGGGG chr5:74807702-74807722 3 2.90e-05 CC TCCTGGGA GTTGTAGTCG chr8:124084814-124084834 12 3.45e-05 CTTGGGCGGA TTTTGGGA G chr10:38383204-38383224 9 7.96e-05 GCGAGGGC TTGTGGGA AATG chr2:95873213-95873233 4 1.28e-04 CGG TGTTGGGA GTGAGGGCC chr19:10828095-10828115 7 1.28e-04 GATGCG CTCTGGGA CTTGTA chr3:101443695-101443715 13 1.28e-04 GCGGGCTACC CTCTGGGA chr19:44488267-44488287 1 1.63e-04 . TCGTGGGA ACTTTGGCTC chr3:69788472-69788492 11 1.63e-04 GCTGTAGTTT TCGTGGGA GC chr7:93633716-93633736 3 2.35e-04 AG CCCTGGGA AGAAGGTTGA chr16:58426749-58426769 3 2.35e-04 GG CCCTGGGA CGCCGCATCG chr7:76178503-76178523 4 2.76e-04 GGC TCATGGGA AATAGAGTC chr19:41084584-41084604 6 2.76e-04 GCTGA TGCTTGGA AAGGAAG chr21:35747767-35747787 13 2.87e-04 TAGCGGTGCA TTTCGGGA chr20:47805094-47805114 12 3.31e-04 TCCCGGGGCC TGCCGGGA G chr15:41099736-41099756 6 3.31e-04 TTGTG TTCTGGGT CAGGCTT chr18:9913631-9913651 12 3.31e-04 GCAGGGGGCA TGCCGGGA G chr5:57878806-57878826 2 3.31e-04 T TGCCGGGA ACACCCGGAG chr1:107599278-107599298 1 4.64e-04 . TTCCTGGA GCCCGCGCCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TBCTGGGA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:27319272-27319292 1e-05 [+3]_12 chr6:31633718-31633738 2.9e-05 9_[+3]_3 chr16:30786759-30786779 2.9e-05 1_[+3]_11 chrX:155110885-155110905 2.9e-05 [+3]_12 chr5:74807702-74807722 2.9e-05 2_[+3]_10 chr8:124084814-124084834 3.4e-05 11_[+3]_1 chr10:38383204-38383224 8e-05 8_[+3]_4 chr2:95873213-95873233 0.00013 3_[+3]_9 chr19:10828095-10828115 0.00013 6_[+3]_6 chr3:101443695-101443715 0.00013 12_[+3] chr19:44488267-44488287 0.00016 [+3]_12 chr3:69788472-69788492 0.00016 10_[+3]_2 chr7:93633716-93633736 0.00024 2_[+3]_10 chr16:58426749-58426769 0.00024 2_[+3]_10 chr7:76178503-76178523 0.00028 3_[+3]_9 chr19:41084584-41084604 0.00028 5_[+3]_7 chr21:35747767-35747787 0.00029 12_[+3] chr20:47805094-47805114 0.00033 11_[+3]_1 chr15:41099736-41099756 0.00033 5_[+3]_7 chr18:9913631-9913651 0.00033 11_[+3]_1 chr5:57878806-57878826 0.00033 1_[+3]_11 chr1:107599278-107599298 0.00046 [+3]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TBCTGGGA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TBCTGGGA width=8 seqs=22 chr2:27319272-27319292 ( 1) TTCTGGGA 1 chr6:31633718-31633738 ( 10) TCCTGGGA 1 chr16:30786759-30786779 ( 2) TCCTGGGA 1 chrX:155110885-155110905 ( 1) TCCTGGGA 1 chr5:74807702-74807722 ( 3) TCCTGGGA 1 chr8:124084814-124084834 ( 12) TTTTGGGA 1 chr10:38383204-38383224 ( 9) TTGTGGGA 1 chr2:95873213-95873233 ( 4) TGTTGGGA 1 chr19:10828095-10828115 ( 7) CTCTGGGA 1 chr3:101443695-101443715 ( 13) CTCTGGGA 1 chr19:44488267-44488287 ( 1) TCGTGGGA 1 chr3:69788472-69788492 ( 11) TCGTGGGA 1 chr7:93633716-93633736 ( 3) CCCTGGGA 1 chr16:58426749-58426769 ( 3) CCCTGGGA 1 chr7:76178503-76178523 ( 4) TCATGGGA 1 chr19:41084584-41084604 ( 6) TGCTTGGA 1 chr21:35747767-35747787 ( 13) TTTCGGGA 1 chr20:47805094-47805114 ( 12) TGCCGGGA 1 chr15:41099736-41099756 ( 6) TTCTGGGT 1 chr18:9913631-9913651 ( 12) TGCCGGGA 1 chr5:57878806-57878826 ( 2) TGCCGGGA 1 chr1:107599278-107599298 ( 1) TTCCTGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TBCTGGGA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.22846 E= 6.8e-002 -1110 -79 -1110 226 -1110 37 -50 109 -207 111 -124 -32 -1110 -47 -1110 218 -1110 -1110 149 -91 -1110 -1110 163 -1110 -1110 -1110 163 -1110 232 -1110 -1110 -191 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TBCTGGGA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 6.8e-002 0.000000 0.181818 0.000000 0.818182 0.000000 0.409091 0.227273 0.363636 0.045455 0.681818 0.136364 0.136364 0.000000 0.227273 0.000000 0.772727 0.000000 0.000000 0.909091 0.090909 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.954545 0.000000 0.000000 0.045455 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TBCTGGGA MEME-3 regular expression -------------------------------------------------------------------------------- T[CTG]C[TC]GGGA -------------------------------------------------------------------------------- Time 5.01 secs. ******************************************************************************** ******************************************************************************** MOTIF TCCCAGVA MEME-4 width = 8 sites = 12 llr = 101 E-value = 6.8e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCCCAGVA MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::823a pos.-specific C :aaa:24: probability G ::::273: matrix T a:::::1: bits 2.6 * 2.3 * * 2.0 * * 1.8 **** * Relative 1.5 ***** * Entropy 1.3 ***** * (12.1 bits) 1.0 ***** * 0.8 ***** * 0.5 ****** * 0.3 ****** * 0.0 -------- Multilevel TCCCAGCA consensus A sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCAGVA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr16:70473243-70473263 3 3.22e-05 TC TCCCAGAA GACAGCGCGC chr19:19887321-19887341 4 3.22e-05 AAC TCCCAGCA TACCAGGCG chr6:10147385-10147405 2 5.28e-05 c tcccagga tgcaatgcat chr20:62694393-62694413 7 5.28e-05 TACACT TCCCAGGA GGCTGT chr6:43597127-43597147 12 5.28e-05 GCCCTACAAC TCCCAGGA G chr1:23695383-23695403 1 7.18e-05 . TCCCAACA GCGCCTGCGG chr2:38893027-38893047 3 7.18e-05 AT TCCCAACA TGCAATGCAA chr19:49404499-49404519 2 8.27e-05 T TCCCAGTA GCAGTTGATG chr16:4321878-4321898 6 1.14e-04 ACAAA TCCCACAA TGCTGCA chr10:43048361-43048381 9 1.14e-04 GCTACATT TCCCACAA GCCC chr5:173043771-173043791 11 2.07e-04 AAACTACAAC TCCCGGCA GG chr19:38397780-38397800 9 2.07e-04 CCTACGGC TCCCGGCA GCCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCAGVA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:70473243-70473263 3.2e-05 2_[+4]_10 chr19:19887321-19887341 3.2e-05 3_[+4]_9 chr6:10147385-10147405 5.3e-05 1_[+4]_11 chr20:62694393-62694413 5.3e-05 6_[+4]_6 chr6:43597127-43597147 5.3e-05 11_[+4]_1 chr1:23695383-23695403 7.2e-05 [+4]_12 chr2:38893027-38893047 7.2e-05 2_[+4]_10 chr19:49404499-49404519 8.3e-05 1_[+4]_11 chr16:4321878-4321898 0.00011 5_[+4]_7 chr10:43048361-43048381 0.00011 8_[+4]_4 chr5:173043771-173043791 0.00021 10_[+4]_2 chr19:38397780-38397800 0.00021 8_[+4]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCAGVA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCCCAGVA width=8 seqs=12 chr16:70473243-70473263 ( 3) TCCCAGAA 1 chr19:19887321-19887341 ( 4) TCCCAGCA 1 chr6:10147385-10147405 ( 2) TCCCAGGA 1 chr20:62694393-62694413 ( 7) TCCCAGGA 1 chr6:43597127-43597147 ( 12) TCCCAGGA 1 chr1:23695383-23695403 ( 1) TCCCAACA 1 chr2:38893027-38893047 ( 3) TCCCAACA 1 chr19:49404499-49404519 ( 2) TCCCAGTA 1 chr16:4321878-4321898 ( 6) TCCCACAA 1 chr10:43048361-43048381 ( 9) TCCCACAA 1 chr5:173043771-173043791 ( 11) TCCCGGCA 1 chr19:38397780-38397800 ( 9) TCCCGGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCAGVA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.52481 E= 6.8e+001 -1023 -1023 -1023 255 -1023 166 -1023 -1023 -1023 166 -1023 -1023 -1023 166 -1023 -1023 212 -1023 -95 -1023 -20 -92 105 -1023 39 40 -37 -103 239 -1023 -1023 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCAGVA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 6.8e+001 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.833333 0.000000 0.166667 0.000000 0.166667 0.166667 0.666667 0.000000 0.250000 0.416667 0.250000 0.083333 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCAGVA MEME-4 regular expression -------------------------------------------------------------------------------- TCCCAG[CAG]A -------------------------------------------------------------------------------- Time 5.79 secs. ******************************************************************************** ******************************************************************************** MOTIF TWTTYTAA MEME-5 width = 8 sites = 2 llr = 24 E-value = 1.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TWTTYTAA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :5::::aa pos.-specific C ::::5::: probability G :::::::: matrix T a5aa5a:: bits 2.6 * ** * 2.3 * ** *** 2.0 * ** *** 1.8 * ** *** Relative 1.5 **** *** Entropy 1.3 **** *** (17.6 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TATTCTAA consensus T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWTTYTAA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:224544474-224544494 4 9.12e-07 GAG TTTTTTAA AATATGGAC chr22:30163129-30163149 5 5.50e-06 GACA TATTCTAA CAGCCAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWTTYTAA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:224544474-224544494 9.1e-07 3_[+5]_9 chr22:30163129-30163149 5.5e-06 4_[+5]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWTTYTAA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TWTTYTAA width=8 seqs=2 chr1:224544474-224544494 ( 4) TTTTTTAA 1 chr22:30163129-30163149 ( 5) TATTCTAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWTTYTAA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.6653 E= 1.5e+003 -765 -765 -765 254 138 -765 -765 155 -765 -765 -765 254 -765 -765 -765 254 -765 66 -765 155 -765 -765 -765 254 238 -765 -765 -765 238 -765 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWTTYTAA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.5e+003 0.000000 0.000000 0.000000 1.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWTTYTAA MEME-5 regular expression -------------------------------------------------------------------------------- T[AT]TT[CT]TAA -------------------------------------------------------------------------------- Time 6.80 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:49148214-49148234 5.00e-01 20 chr17:7118444-7118464 2.61e-01 20 chr19:49013951-49013971 2.47e-01 20 chr19:49310056-49310076 7.90e-01 20 chr19:54682399-54682419 7.21e-01 20 chr19:49469220-49469240 1.94e-01 20 chr2:86332718-86332738 2.49e-02 20 chr19:507921-507941 9.99e-01 20 chr19:48866467-48866487 8.61e-01 20 chr19:55817022-55817042 7.43e-01 20 chr6:43215054-43215074 4.69e-01 20 chr19:49248641-49248661 4.88e-01 20 chr19:49250521-49250541 1.01e-01 20 chr16:46918163-46918183 6.56e-01 20 chr19:49228284-49228304 5.13e-01 20 chr19:50651567-50651587 3.85e-01 20 chr19:49224378-49224398 4.46e-01 20 chr19:49416558-49416578 3.66e-02 20 chr19:49362048-49362068 5.12e-01 20 chr10:38383204-38383224 2.26e-02 8_[+3(7.96e-05)]_4 chr5:178286920-178286940 1.39e-03 20 chr16:30103290-30103310 9.55e-01 20 chr19:55690546-55690566 8.89e-01 20 chr19:45988736-45988756 9.31e-01 20 chr4:2538121-2538141 8.37e-01 20 chr2:128644009-128644029 8.23e-01 20 chr22:41840495-41840515 8.76e-01 20 chr6:11093968-11093988 8.11e-01 20 chr13:30881258-30881278 4.88e-04 12_[+2(1.17e-05)] chr6:52929659-52929679 4.06e-01 20 chr11:114310103-11431012 6.96e-01 20 chr10:89102634-89102654 1.70e-01 20 chr6:157801114-157801134 3.79e-02 20 chr4:18023819-18023839 6.61e-02 20 chr19:38397780-38397800 4.79e-02 20 chr3:14166393-14166413 6.46e-01 20 chr2:27319272-27319292 2.98e-04 [+3(1.02e-05)]_12 chr10:104262616-10426263 2.56e-01 20 chr19:52097772-52097792 9.93e-01 20 chr10:81586531-81586551 9.72e-01 20 chr1:6673656-6673676 4.01e-01 20 chr19:49385166-49385186 9.30e-01 20 chr19:48907041-48907061 4.68e-01 20 chr10:43048361-43048381 5.13e-02 20 chr5:57878806-57878826 2.68e-02 20 chr10:124134055-12413407 9.94e-01 20 chr14:59655303-59655323 8.53e-01 20 chr16:31106275-31106295 8.36e-01 20 chr3:183735790-183735810 9.69e-01 20 chr16:68482635-68482655 3.41e-01 20 chr11:134123345-13412336 2.68e-01 20 chr17:40559701-40559721 7.91e-01 20 chr7:150689979-150689999 3.95e-02 20 chr16:30908514-30908534 5.18e-02 20 chr7:63767770-63767790 7.89e-01 20 chr16:70488368-70488388 7.20e-01 20 chr19:46027188-46027208 2.30e-01 20 chr19:48833463-48833483 9.50e-01 20 chr4:8160700-8160720 8.04e-01 20 chr1:224544474-224544494 2.31e-03 3_[+5(9.12e-07)]_9 chr19:45908764-45908784 8.88e-01 20 chr3:69788472-69788492 1.94e-05 2_[+1(2.91e-06)]_10 chr3:127771070-127771090 3.90e-01 20 chr1:47799928-47799948 9.88e-01 20 chr11:60681361-60681381 1.67e-01 20 chr19:56915646-56915666 1.00e+00 20 chr1:2457675-2457695 1.69e-03 10_[+1(2.69e-05)]_2 chr6:43597127-43597147 3.23e-03 11_[+4(5.28e-05)]_1 chr19:55709087-55709107 4.75e-02 20 chr19:50836865-50836885 6.08e-01 20 chr16:58426749-58426769 8.18e-02 20 chr1:154979460-154979480 3.50e-01 20 chr2:54950571-54950591 9.72e-01 20 chr19:42463570-42463590 5.93e-01 20 chr1:147142698-147142718 4.98e-01 20 chr11:64578073-64578093 4.18e-03 12_[+1(8.75e-05)] chr9:131965209-131965229 7.23e-01 20 chr19:50163196-50163216 3.26e-01 20 chr2:2617309-2617329 5.92e-03 9_[+2(4.34e-06)]_3 chr1:38412733-38412753 8.78e-01 20 chr10:92631687-92631707 8.76e-01 20 chrX:129116497-129116517 8.82e-01 20 chr8:124054130-124054150 5.07e-01 20 chr19:41084584-41084604 6.05e-02 20 chr12:133532907-13353292 3.32e-03 10_[+2(1.17e-05)]_2 chr19:48673779-48673799 1.00e+00 20 chr1:244816079-244816099 7.15e-01 20 chr18:9913631-9913651 5.81e-02 20 chr2:38893027-38893047 3.52e-02 2_[+4(7.18e-05)]_10 chr10:44144360-44144380 4.44e-01 20 chr16:4321878-4321898 2.43e-02 20 chr9:97021521-97021541 4.04e-01 20 chr9:99616849-99616869 2.48e-01 20 chr19:49479580-49479600 2.85e-02 20 chr19:1905283-1905303 8.37e-01 20 chr5:138775227-138775247 1.76e-01 20 chr1:1051578-1051598 9.14e-01 20 chr8:82755014-82755034 2.02e-02 10_[+2(1.90e-05)]_2 chr1:247095537-247095557 7.74e-01 20 chr19:55629156-55629176 3.19e-01 20 chr10:111985617-11198563 2.47e-01 20 chr7:102389339-102389359 2.72e-04 6_[+1(5.35e-05)]_6 chrX:106045802-106045822 1.09e-01 20 chr5:178157741-178157761 4.97e-03 20 chr16:577581-577601 8.62e-01 20 chr21:15755569-15755589 6.03e-01 20 chrX:134478651-134478671 9.83e-01 20 chr19:48922707-48922727 7.83e-01 20 chr17:7358856-7358876 8.12e-02 20 chr1:243419265-243419285 9.74e-03 8_[+2(3.14e-05)]_4 chr19:19887321-19887341 3.07e-02 3_[+4(3.22e-05)]_9 chr11:66138903-66138923 8.17e-01 20 chr3:101443695-101443715 4.47e-02 20 chr19:44809227-44809247 4.65e-02 20 chr17:73937189-73937209 7.28e-01 20 chr14:90798190-90798210 6.72e-03 20 chr17:73780757-73780777 6.57e-02 20 chr1:93646136-93646156 8.90e-02 20 chr16:70473243-70473263 6.73e-03 2_[+4(3.22e-05)]_10 chr20:62694393-62694413 5.23e-03 6_[+4(5.28e-05)]_6 chr12:56710156-56710176 4.94e-01 20 chr12:122985593-12298561 3.41e-01 20 chr19:2457038-2457058 1.11e-01 20 chr19:36208479-36208499 5.73e-01 20 chr17:76250666-76250686 8.44e-01 20 chr20:48732516-48732536 2.86e-03 1_[+1(1.37e-05)]_11 chr19:38270252-38270272 2.21e-05 [+1(2.91e-06)]_12 chr14:77787640-77787660 2.63e-01 20 chr19:49404499-49404519 4.02e-02 1_[+4(8.27e-05)]_11 chr7:150755135-150755155 4.02e-01 20 chr7:100888079-100888099 2.62e-01 20 chr8:144699833-144699853 7.45e-01 20 chr5:55008195-55008215 9.60e-01 20 chr6:5003936-5003956 2.85e-01 20 chrX:48980177-48980197 3.68e-01 20 chr7:76751722-76751742 3.85e-01 20 chr21:35747767-35747787 3.92e-02 20 chr19:54618752-54618772 4.22e-01 20 chr14:65569294-65569314 8.48e-01 20 chr15:75182340-75182360 4.28e-01 20 chr8:119634239-119634259 7.04e-03 4_[+1(8.30e-06)]_8 chr17:40950749-40950769 7.25e-01 20 chr21:35288175-35288195 9.35e-01 20 chr1:115300174-115300194 4.47e-02 9_[+2(1.90e-05)]_3 chr11:46134709-46134729 1.38e-02 20 chr2:172543924-172543944 7.74e-01 20 chr20:23402187-23402207 7.15e-01 20 chr19:44556029-44556049 3.31e-02 20 chr5:74807702-74807722 4.98e-05 2_[+3(2.90e-05)]_10 chr3:32147935-32147955 9.32e-01 20 chr2:172290722-172290742 8.91e-06 1_[+1(8.30e-06)]_11 chr11:74109868-74109888 2.31e-03 [+1(8.30e-06)]_12 chr13:26828026-26828046 6.02e-04 3_[+1(1.37e-05)]_9 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1.02e-02 10_[+2(1.17e-05)]_2 chr7:76178503-76178523 2.55e-02 20 chr12:13197296-13197316 9.97e-01 20 chr3:75690345-75690365 2.97e-02 20 chr19:55815829-55815849 6.89e-01 20 chr17:7094978-7094998 7.99e-01 20 chr12:67662619-67662639 1.42e-01 20 chr15:52121820-52121840 5.40e-01 20 chr12:53895278-53895298 8.82e-01 20 chr10:97667913-97667933 6.71e-01 20 chr19:54024141-54024161 7.58e-02 20 chr8:124084814-124084834 5.83e-03 11_[+3(3.45e-05)]_1 chr15:55700578-55700598 1.32e-01 20 chr19:44617448-44617468 2.15e-02 20 chr16:686401-686421 5.60e-03 11_[+2(4.34e-06)]_1 chr1:45279525-45279545 7.63e-01 20 chr19:40315325-40315345 5.74e-01 20 chr3:61235797-61235817 6.78e-01 20 chr3:50126288-50126308 1.88e-02 20 chrX:149736838-149736858 5.72e-01 20 chr4:104021043-104021063 2.64e-04 3_[+1(2.91e-06)]_9 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n04.farnam.hpc.yale.internal ********************************************************************************