******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/ZFP36.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr17:76125894-76125914 1.0000 20 chr1:166844965-166844985 1.0000 20 chr1:206712416-206712436 1.0000 20 chr22:30662519-30662539 1.0000 20 chr3:196756307-196756327 1.0000 20 chr19:17961174-17961194 1.0000 20 chr15:68521014-68521034 1.0000 20 chr22:24186419-24186439 1.0000 20 chr7:149569617-149569637 1.0000 20 chr20:44486711-44486731 1.0000 20 chr7:3083332-3083352 1.0000 20 chr19:3184297-3184317 1.0000 20 chr17:17709510-17709530 1.0000 20 chr15:74722277-74722297 1.0000 20 chr1:31228373-31228393 1.0000 20 chr20:48429802-48429822 1.0000 20 chr14:93143246-93143266 1.0000 20 chr19:40921889-40921909 1.0000 20 chr17:1732707-1732727 1.0000 20 chr3:107456964-107456984 1.0000 20 chr7:100223906-100223926 1.0000 20 chr9:130734102-130734122 1.0000 20 chr20:49416745-49416765 1.0000 20 chr22:45478901-45478921 1.0000 20 chr5:150017774-150017794 1.0000 20 chr20:6750637-6750657 1.0000 20 chr5:139046834-139046854 1.0000 20 chr15:73089588-73089608 1.0000 20 chr9:117224021-117224041 1.0000 20 chr16:81864681-81864701 1.0000 20 chr20:43273351-43273371 1.0000 20 chr20:37511408-37511428 1.0000 20 chr17:1360474-1360494 1.0000 20 chr11:67255582-67255602 1.0000 20 chr2:42996181-42996201 1.0000 20 chr8:142067729-142067749 1.0000 20 chr14:105647106-10564712 1.0000 20 chr19:3556569-3556589 1.0000 20 chr1:41706066-41706086 1.0000 20 chr17:70584125-70584145 1.0000 20 chr20:30951483-30951503 1.0000 20 chr17:37773707-37773727 1.0000 20 chr14:69282494-69282514 1.0000 20 chr12:118735291-11873531 1.0000 20 chr19:46117377-46117397 1.0000 20 chr11:73051436-73051456 1.0000 20 chr1:245003144-245003164 1.0000 20 chr14:101014555-10101457 1.0000 20 chr19:10449839-10449859 1.0000 20 chr9:139402225-139402245 1.0000 20 chr19:57610784-57610804 1.0000 20 chr7:55455444-55455464 1.0000 20 chr15:85148648-85148668 1.0000 20 chr7:28563404-28563424 1.0000 20 chr1:12249279-12249299 1.0000 20 chr11:117781494-11778151 1.0000 20 chr16:57682532-57682552 1.0000 20 chr1:117130327-117130347 1.0000 20 chr4:112996517-112996537 1.0000 20 chr19:49414242-49414262 1.0000 20 chr12:32002185-32002205 1.0000 20 chr11:2187438-2187458 1.0000 20 chr9:101946641-101946661 1.0000 20 chr12:124991913-12499193 1.0000 20 chr4:8195241-8195261 1.0000 20 chr17:75440146-75440166 1.0000 20 chr12:122226284-12222630 1.0000 20 chr9:117112197-117112217 1.0000 20 chr1:38559447-38559467 1.0000 20 chr7:5421090-5421110 1.0000 20 chr9:102278816-102278836 1.0000 20 chr10:112294514-11229453 1.0000 20 chr11:72142227-72142247 1.0000 20 chr16:88546615-88546635 1.0000 20 chr15:74720053-74720073 1.0000 20 chr10:45869149-45869169 1.0000 20 chr19:16186345-16186365 1.0000 20 chr2:9890863-9890883 1.0000 20 chr22:29789109-29789129 1.0000 20 chr15:68572881-68572901 1.0000 20 chr14:92907136-92907156 1.0000 20 chr16:725376-725396 1.0000 20 chr7:73629546-73629566 1.0000 20 chr16:11707483-11707503 1.0000 20 chr19:18221261-18221281 1.0000 20 chr12:94569742-94569762 1.0000 20 chr9:137237755-137237775 1.0000 20 chr19:3275815-3275835 1.0000 20 chr8:85553224-85553244 1.0000 20 chr14:91819648-91819668 1.0000 20 chr5:149535008-149535028 1.0000 20 chr6:138428203-138428223 1.0000 20 chr10:55899735-55899755 1.0000 20 chr11:120489295-12048931 1.0000 20 chr22:38056822-38056842 1.0000 20 chr20:855069-855089 1.0000 20 chr1:2574074-2574094 1.0000 20 chr3:196226869-196226889 1.0000 20 chr11:115944331-11594435 1.0000 20 chr1:23916740-23916760 1.0000 20 chr16:85061786-85061806 1.0000 20 chr19:35876970-35876990 1.0000 20 chr19:5695163-5695183 1.0000 20 chr19:7981738-7981758 1.0000 20 chr9:136295554-136295574 1.0000 20 chr1:31224880-31224900 1.0000 20 chr8:117081604-117081624 1.0000 20 chr13:113900913-11390093 1.0000 20 chr1:55452406-55452426 1.0000 20 chr16:66550127-66550147 1.0000 20 chr6:114301359-114301379 1.0000 20 chr2:20422320-20422340 1.0000 20 chr19:13955605-13955625 1.0000 20 chr22:37882798-37882818 1.0000 20 chr11:35147771-35147791 1.0000 20 chr1:29181690-29181710 1.0000 20 chr10:112531445-11253146 1.0000 20 chr12:56137482-56137502 1.0000 20 chr16:67481651-67481671 1.0000 20 chr1:33764431-33764451 1.0000 20 chr1:248877735-248877755 1.0000 20 chr6:36696248-36696268 1.0000 20 chr3:10395025-10395045 1.0000 20 chr11:68224884-68224904 1.0000 20 chr8:142414813-142414833 1.0000 20 chr10:50386726-50386746 1.0000 20 chr1:21900537-21900557 1.0000 20 chr10:125754707-12575472 1.0000 20 chr7:75849635-75849655 1.0000 20 chr19:4844561-4844581 1.0000 20 chr9:140840200-140840220 1.0000 20 chr20:31156983-31157003 1.0000 20 chr1:25868153-25868173 1.0000 20 chr9:123681990-123682010 1.0000 20 chr16:22190053-22190073 1.0000 20 chr3:52058507-52058527 1.0000 20 chr19:7715215-7715235 1.0000 20 chr19:18404175-18404195 1.0000 20 chr11:66233239-66233259 1.0000 20 chr1:181463213-181463233 1.0000 20 chr19:17886519-17886539 1.0000 20 chr18:20850062-20850082 1.0000 20 chr17:75243879-75243899 1.0000 20 chr4:8115694-8115714 1.0000 20 chr9:132003259-132003279 1.0000 20 chr6:31553476-31553496 1.0000 20 chr14:94466814-94466834 1.0000 20 chr6:13465213-13465233 1.0000 20 chr21:46746979-46746999 1.0000 20 chr1:156390236-156390256 1.0000 20 chr14:92711354-92711374 1.0000 20 chr10:80673926-80673946 1.0000 20 chr3:127392137-127392157 1.0000 20 chr12:108703821-10870384 1.0000 20 chr15:63792626-63792646 1.0000 20 chr5:171483190-171483210 1.0000 20 chr3:13082316-13082336 1.0000 20 chr3:13110295-13110315 1.0000 20 chr19:4585749-4585769 1.0000 20 chr11:60857684-60857704 1.0000 20 chr8:42965650-42965670 1.0000 20 chr1:23965349-23965369 1.0000 20 chr17:75423000-75423020 1.0000 20 chr10:88466906-88466926 1.0000 20 chr17:10108959-10108979 1.0000 20 chr8:128932660-128932680 1.0000 20 chr1:151335020-151335040 1.0000 20 chrX:48542042-48542062 1.0000 20 chr16:85173557-85173577 1.0000 20 chr12:100557801-10055782 1.0000 20 chr1:154579695-154579715 1.0000 20 chr19:49155072-49155092 1.0000 20 chr5:142764772-142764792 1.0000 20 chrX:152677082-152677102 1.0000 20 chr7:102032979-102032999 1.0000 20 chr10:100150962-10015098 1.0000 20 chr16:85275307-85275327 1.0000 20 chr22:25457282-25457302 1.0000 20 chr19:718736-718756 1.0000 20 chr9:136689681-136689701 1.0000 20 chr14:52334494-52334514 1.0000 20 chr2:239371608-239371628 1.0000 20 chr11:67809339-67809359 1.0000 20 chr19:50396179-50396199 1.0000 20 chr18:46698799-46698819 1.0000 20 chr1:228222836-228222856 1.0000 20 chr1:25284323-25284343 1.0000 20 chr19:38754411-38754431 1.0000 20 chr9:136791794-136791814 1.0000 20 chr6:43237103-43237123 1.0000 20 chr1:226988668-226988688 1.0000 20 chr4:189852159-189852179 1.0000 20 chr2:195248328-195248348 1.0000 20 chr22:37710515-37710535 1.0000 20 chr19:13970464-13970484 1.0000 20 chr20:50797013-50797033 1.0000 20 chr6:33047946-33047966 1.0000 20 chr3:183260337-183260357 1.0000 20 chr19:4069698-4069718 1.0000 20 chr12:113506495-11350651 1.0000 20 chr1:32215730-32215750 1.0000 20 chr19:42634896-42634916 1.0000 20 chr9:117156987-117157007 1.0000 20 chr1:41829404-41829424 1.0000 20 chr22:50912357-50912377 1.0000 20 chr5:138716040-138716060 1.0000 20 chr9:90070510-90070530 1.0000 20 chr3:58677924-58677944 1.0000 20 chr1:9377272-9377292 1.0000 20 chr6:33809817-33809837 1.0000 20 chr2:217482312-217482332 1.0000 20 chr6:135703682-135703702 1.0000 20 chr19:5315163-5315183 1.0000 20 chr19:10038261-10038281 1.0000 20 chr4:5958039-5958059 1.0000 20 chr2:26942330-26942350 1.0000 20 chr16:81710793-81710813 1.0000 20 chr10:1026663-1026683 1.0000 20 chr17:72322232-72322252 1.0000 20 chr14:105106272-10510629 1.0000 20 chr4:7257006-7257026 1.0000 20 chr20:47438932-47438952 1.0000 20 chr10:71603863-71603883 1.0000 20 chr11:57088325-57088345 1.0000 20 chr10:105335984-10533600 1.0000 20 chr22:27054350-27054370 1.0000 20 chr14:75902325-75902345 1.0000 20 chr20:10303462-10303482 1.0000 20 chr12:58039837-58039857 1.0000 20 chr4:8145283-8145303 1.0000 20 chr1:12248418-12248438 1.0000 20 chr16:57596787-57596807 1.0000 20 chr17:3816317-3816337 1.0000 20 chr7:99958029-99958049 1.0000 20 chr14:61797426-61797446 1.0000 20 chr14:100470916-10047093 1.0000 20 chr19:19266813-19266833 1.0000 20 chr3:122664269-122664289 1.0000 20 chr22:43667134-43667154 1.0000 20 chr7:73433663-73433683 1.0000 20 chr7:73735028-73735048 1.0000 20 chr22:47152193-47152213 1.0000 20 chr11:64036709-64036729 1.0000 20 chr16:2040713-2040733 1.0000 20 chr3:50592227-50592247 1.0000 20 chr1:67715944-67715964 1.0000 20 chr19:46139705-46139725 1.0000 20 chr10:121066695-12106671 1.0000 20 chr2:95832004-95832024 1.0000 20 chr22:25809856-25809876 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_ZFP36/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/ZFP36.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.211 C 0.295 G 0.276 T 0.218 Background letter frequencies (from file dataset with add-one prior applied): A 0.211 C 0.295 G 0.276 T 0.218 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CYTCCWGG MEME-1 width = 8 sites = 123 llr = 766 E-value = 6.1e-099 ******************************************************************************** -------------------------------------------------------------------------------- Motif CYTCCWGG MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::1::41: pos.-specific C a6:a9122 probability G ::::::57 matrix T :49::511 bits 2.2 2.0 1.8 * * 1.6 * ** Relative 1.3 * *** Entropy 1.1 * *** (9.0 bits) 0.9 ***** 0.7 ****** * 0.4 ****** * 0.2 ******** 0.0 -------- Multilevel CCTCCTGG consensus T AC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYTCCWGG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:73433663-73433683 13 2.74e-05 TCCAGGAAGC CCTCCTGG chr1:23965349-23965369 12 2.74e-05 cctgggaagc cctcctgg a chr19:5695163-5695183 11 2.74e-05 tccaggaagg cctcctgg tt chr4:7257006-7257026 9 4.77e-05 agggagag cttcctgg agga chr17:75423000-75423020 7 4.77e-05 ggaaga cttcctgg aggaag chr10:80673926-80673946 13 4.77e-05 TCCAGGAGGG CTTCCTGG chr19:17886519-17886539 7 4.77e-05 gcaggg cttcctgg aggagg chr6:36696248-36696268 7 4.77e-05 ggaagg cttcctgg gggagg chr12:56137482-56137502 2 4.77e-05 A CTTCCTGG AGGAGGACGA chr16:66550127-66550147 3 4.77e-05 gg cttcctgg aggaggtgac chr1:31224880-31224900 9 4.77e-05 caggagag cttcctgg agga chr9:136295554-136295574 7 4.77e-05 ggaggg cttcctgg aggaag chr14:91819648-91819668 8 4.77e-05 aggaagc cttcctgg cctgc chr22:29789109-29789129 8 4.77e-05 gggaagt cttcctgg aggaa chr16:88546615-88546635 12 4.77e-05 tccaggaagc cttcctgg a chr10:112294514-11229453 8 4.77e-05 AGGAGGC CTTCCTGG AGGTG chr9:101946641-101946661 7 4.77e-05 GCTGGG CTTCCTGG AGGAGG chr19:10449839-10449859 6 4.77e-05 gaagg cttcctgg aagcggg chr14:69282494-69282514 3 4.77e-05 gg cttcctgg tggagctgat chr20:30951483-30951503 12 4.77e-05 tcagggaagg cttcctgg a chr5:150017774-150017794 9 4.77e-05 caggaaga cttcctgg attg chr19:40921889-40921909 8 4.77e-05 aggaggg cttcctgg aggaa chr19:46139705-46139725 12 7.42e-05 tgtatctcct cctccagg a chr17:3816317-3816337 11 7.42e-05 tgtgtcacct cctccagg aa chr1:32215730-32215750 11 7.42e-05 gttgccacct cctccagg aa chr9:136689681-136689701 3 7.42e-05 ct cctccagg aaggcttcct chr11:60857684-60857704 4 7.42e-05 ccc cctccagg aagccttcc chr3:13110295-13110315 8 7.42e-05 gtcacct cctccagg aagcc chr9:123681990-123682010 10 7.42e-05 ccgccacct cctccagg aag chr10:50386726-50386746 9 7.42e-05 AGACTcct cctccagg aagc chr2:20422320-20422340 13 7.42e-05 tcaagcacct cctccagg chr5:149535008-149535028 7 7.42e-05 TCACCC CCTCCAGG AAGTCC chr9:137237755-137237775 9 7.42e-05 tgtcccct cctccagg aagc chr10:45869149-45869169 7 7.42e-05 tggcct cctccagg aagccc chr7:5421090-5421110 3 7.42e-05 tt cctccagg aagccctccc chr9:117112197-117112217 3 7.42e-05 tt cctccagg aagccctccc chr19:49414242-49414262 13 7.42e-05 gggatcacct cctccagg chr14:101014555-10101457 9 7.42e-05 TTCCACCT CCTCCAGG CAGC chr19:46117377-46117397 5 7.42e-05 tctt cctccagg aagccctc chr2:42996181-42996201 3 7.42e-05 ct cctccagg aagccttcct chr20:43273351-43273371 10 7.42e-05 GCTCCACTT CCTCCAGG AAG chr7:100223906-100223926 5 7.42e-05 ACCT CCTCCAGG CAGCCTTT chr3:107456964-107456984 5 7.42e-05 acct cctccagg aagtcctt chr20:48429802-48429822 6 7.42e-05 CGCCT CCTCCAGG AAGTCGT chr7:149569617-149569637 11 7.42e-05 aatctcacct cctccagg ga chr1:166844965-166844985 10 7.42e-05 AGGCCTCCA CCTCCAGG AAG chr22:43667134-43667154 5 9.38e-05 acct cttccagg aagccctc chr22:25809856-25809876 5 2.32e-04 cttt cctcctag gcctctga chr11:57088325-57088345 13 2.32e-04 tccatgaagc cttccttg chr1:226988668-226988688 8 2.32e-04 aggaagc cttccttg attct chr16:85275307-85275327 9 2.32e-04 tactcagc cctcctAG GGTG chr14:92711354-92711374 2 2.32e-04 t cctcctag gcctctgggc chr15:74720053-74720073 10 2.32e-04 CCAGGAAGC CTTCCTTG ATT chr7:3083332-3083352 11 2.32e-04 CGGGGCGCCT CCTCCACG CA chr2:26942330-26942350 4 2.53e-04 cct cctccatg aagccctcc chr3:13082316-13082336 12 2.53e-04 gctgtcacct cctccatg a chr7:28563404-28563424 4 2.53e-04 cca cctccatg aagccttct chr15:68521014-68521034 11 2.53e-04 agtgccactt cctccatg aa chr1:156390236-156390256 9 3.18e-04 cgccgcct cttccacg cagc chr1:31228373-31228393 7 3.18e-04 ACTCTC CCTCCTGC CAATGG chr22:27054350-27054370 13 3.54e-04 gttatcgaca cctccaag chr5:171483190-171483210 5 3.54e-04 acct cctccaag aagccttc chr22:45478901-45478921 11 3.54e-04 cccatcaccg cctccaag aa chr3:196756307-196756327 12 3.54e-04 GAGGCCGCCT CCTCCAAG A chr10:105335984-10533600 5 4.94e-04 AGGA CTTCCTGT AGGAGACA chr3:127392137-127392157 9 4.94e-04 CCGGAGGG CTTCCTGT AAGA chr4:189852159-189852179 5 5.63e-04 ttgc cttccagc tgtacctg chr15:63792626-63792646 1 5.63e-04 . CTTCCCGG AAGAGGCTAT chr11:64036709-64036729 12 6.10e-04 GCTCTAGCTG CCTCCTCC C chr3:122664269-122664289 10 6.10e-04 ACCAAGGAT CCTCCTCC TCC chr19:5315163-5315183 13 6.10e-04 gccaccgcca cctcctcc chr9:136791794-136791814 11 6.10e-04 aaccccagca cctcctcc ag chr11:68224884-68224904 8 6.10e-04 tcagata cctcctcc tccag chr12:124991913-12499193 13 6.10e-04 ttaaacaaca cctcctcc chr11:2187438-2187458 12 6.10e-04 CACCGGGCCT CCTCCTCC A chr5:139046834-139046854 12 6.10e-04 TCCCACCTCA CCTCCTCC A chr6:13465213-13465233 11 7.26e-04 tgaaatgcta cctcctct gt chr11:66233239-66233259 10 7.26e-04 CAAAAGCCA CCTCCTCT GTG chr9:102278816-102278836 9 7.26e-04 ctgcctca cctcctct ggga chr4:8195241-8195261 2 7.26e-04 g cctcctct ttcaggaagc chr8:142067729-142067749 11 7.26e-04 tcaaaggtca cctcctct gt chr17:76125894-76125914 7 7.26e-04 ATGCCA CCTCCTCT GGGGAG chr20:10303462-10303482 4 8.73e-04 agg ctacctgg aggaggcag chr5:138716040-138716060 2 8.73e-04 A CCTCCACC ACGCTGGACA chr6:31553476-31553496 6 8.73e-04 TGCTG CCTCCTAC AGGAAGT chr3:50592227-50592247 12 9.82e-04 TCCAGGCAGG CCTCCCTG A chr20:31156983-31157003 5 9.82e-04 aggg cctccctg aggaggtg chr1:29181690-29181710 8 9.82e-04 gggaggg cctccctg aggag chr17:37773707-37773727 2 9.82e-04 t ccaccagg aagtcctccc chr16:81864681-81864701 13 9.82e-04 tctggggagg cctccctg chr15:74722277-74722297 1 9.82e-04 . cctccctg attgggaaaa chr22:24186419-24186439 4 9.82e-04 agc cctccctg gtcaccTTC chr6:33809817-33809837 5 1.12e-03 ctcc cttccttt caagcttt chr1:245003144-245003164 12 1.12e-03 CTGACTTCTG CCTCCACT C chr11:67255582-67255602 8 1.12e-03 gtcacca cctctagg aagcc chr2:217482312-217482332 12 1.28e-03 TCCAGGAAGT CCTCCCAG C chr20:37511408-37511428 12 1.28e-03 tcagggaagg cctcccag a chr20:50797013-50797033 13 1.32e-03 tcagagctgg cttctagg chr19:13970464-13970484 9 1.45e-03 tcaaaagc cttcccag attg chr19:718736-718756 10 1.45e-03 CCTGGAAGG CTGCCTGG AGG chr10:112531445-11253146 2 1.45e-03 g ctgcctgg aggaggtgtc chr1:12249279-12249299 5 1.45e-03 aggg ctgcctgg aggaggca chr9:117224021-117224041 8 1.45e-03 aggaagt cttcccag atatc chr3:183260337-183260357 4 1.65e-03 cct ctgccagg aagccttct chr8:142414813-142414833 2 2.03e-03 T CCTCAAGG ACCCCCTGAG chr19:10038261-10038281 5 2.35e-03 gcca cctccccc aggaagcc chr1:33764431-33764451 3 2.61e-03 GC CTACCAAG AGCCCTCCAG chr12:118735291-11873531 13 2.82e-03 tcagagaggc cttccggg chr10:121066695-12106671 10 3.07e-03 ttgagtaaa tttcctgg agt chr14:52334494-52334514 8 3.07e-03 catgaag cctccctt ggttt chr22:30662519-30662539 8 3.57e-03 ATCACCT CCCCCTGG AAGCC chr10:100150962-10015098 11 3.69e-03 tcagccaaaa ccacctcc cc chr22:25457282-25457302 8 3.89e-03 ttctgtg ccaccttc tccaa chr19:7981738-7981758 2 3.89e-03 A CTGCCAGC TGAGCCGCTG chr2:9890863-9890883 3 3.89e-03 ca cctcctca gagcagccct chr16:57682532-57682552 12 3.89e-03 TCAAAAGCCA CCTCTTCC T chr11:117781494-11778151 13 4.10e-03 GGCACATTAG CTACCTCC chr9:139402225-139402245 11 4.10e-03 tttccacagg ccacctct tc chr19:3184297-3184317 12 4.10e-03 cacaactttc cctctttc t chr11:115944331-11594435 11 4.37e-03 ttacatgcca cttcttcc ag chr4:8145283-8145303 9 4.70e-03 gctaactc ctacttgg ttgg chr15:73089588-73089608 12 5.06e-03 gctgaggtga ccgcctcc g chr7:75849635-75849655 3 5.72e-03 gg cttcacgg aggaggtgat -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYTCCWGG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:73433663-73433683 2.7e-05 12_[+1] chr1:23965349-23965369 2.7e-05 11_[+1]_1 chr19:5695163-5695183 2.7e-05 10_[+1]_2 chr4:7257006-7257026 4.8e-05 8_[+1]_4 chr17:75423000-75423020 4.8e-05 6_[+1]_6 chr10:80673926-80673946 4.8e-05 12_[+1] chr19:17886519-17886539 4.8e-05 6_[+1]_6 chr6:36696248-36696268 4.8e-05 6_[+1]_6 chr12:56137482-56137502 4.8e-05 1_[+1]_11 chr16:66550127-66550147 4.8e-05 2_[+1]_10 chr1:31224880-31224900 4.8e-05 8_[+1]_4 chr9:136295554-136295574 4.8e-05 6_[+1]_6 chr14:91819648-91819668 4.8e-05 7_[+1]_5 chr22:29789109-29789129 4.8e-05 7_[+1]_5 chr16:88546615-88546635 4.8e-05 11_[+1]_1 chr10:112294514-11229453 4.8e-05 7_[+1]_5 chr9:101946641-101946661 4.8e-05 6_[+1]_6 chr19:10449839-10449859 4.8e-05 5_[+1]_7 chr14:69282494-69282514 4.8e-05 2_[+1]_10 chr20:30951483-30951503 4.8e-05 11_[+1]_1 chr5:150017774-150017794 4.8e-05 8_[+1]_4 chr19:40921889-40921909 4.8e-05 7_[+1]_5 chr19:46139705-46139725 7.4e-05 11_[+1]_1 chr17:3816317-3816337 7.4e-05 10_[+1]_2 chr1:32215730-32215750 7.4e-05 10_[+1]_2 chr9:136689681-136689701 7.4e-05 2_[+1]_10 chr11:60857684-60857704 7.4e-05 3_[+1]_9 chr3:13110295-13110315 7.4e-05 7_[+1]_5 chr9:123681990-123682010 7.4e-05 9_[+1]_3 chr10:50386726-50386746 7.4e-05 8_[+1]_4 chr2:20422320-20422340 7.4e-05 12_[+1] chr5:149535008-149535028 7.4e-05 6_[+1]_6 chr9:137237755-137237775 7.4e-05 8_[+1]_4 chr10:45869149-45869169 7.4e-05 6_[+1]_6 chr7:5421090-5421110 7.4e-05 2_[+1]_10 chr9:117112197-117112217 7.4e-05 2_[+1]_10 chr19:49414242-49414262 7.4e-05 12_[+1] chr14:101014555-10101457 7.4e-05 8_[+1]_4 chr19:46117377-46117397 7.4e-05 4_[+1]_8 chr2:42996181-42996201 7.4e-05 2_[+1]_10 chr20:43273351-43273371 7.4e-05 9_[+1]_3 chr7:100223906-100223926 7.4e-05 4_[+1]_8 chr3:107456964-107456984 7.4e-05 4_[+1]_8 chr20:48429802-48429822 7.4e-05 5_[+1]_7 chr7:149569617-149569637 7.4e-05 10_[+1]_2 chr1:166844965-166844985 7.4e-05 9_[+1]_3 chr22:43667134-43667154 9.4e-05 4_[+1]_8 chr22:25809856-25809876 0.00023 4_[+1]_8 chr11:57088325-57088345 0.00023 12_[+1] chr1:226988668-226988688 0.00023 7_[+1]_5 chr16:85275307-85275327 0.00023 8_[+1]_4 chr14:92711354-92711374 0.00023 1_[+1]_11 chr15:74720053-74720073 0.00023 9_[+1]_3 chr7:3083332-3083352 0.00023 10_[+1]_2 chr2:26942330-26942350 0.00025 3_[+1]_9 chr3:13082316-13082336 0.00025 11_[+1]_1 chr7:28563404-28563424 0.00025 3_[+1]_9 chr15:68521014-68521034 0.00025 10_[+1]_2 chr1:156390236-156390256 0.00032 8_[+1]_4 chr1:31228373-31228393 0.00032 6_[+1]_6 chr22:27054350-27054370 0.00035 12_[+1] chr5:171483190-171483210 0.00035 4_[+1]_8 chr22:45478901-45478921 0.00035 10_[+1]_2 chr3:196756307-196756327 0.00035 11_[+1]_1 chr10:105335984-10533600 0.00049 4_[+1]_8 chr3:127392137-127392157 0.00049 8_[+1]_4 chr4:189852159-189852179 0.00056 4_[+1]_8 chr15:63792626-63792646 0.00056 [+1]_12 chr11:64036709-64036729 0.00061 11_[+1]_1 chr3:122664269-122664289 0.00061 9_[+1]_3 chr19:5315163-5315183 0.00061 12_[+1] chr9:136791794-136791814 0.00061 10_[+1]_2 chr11:68224884-68224904 0.00061 7_[+1]_5 chr12:124991913-12499193 0.00061 12_[+1] chr11:2187438-2187458 0.00061 11_[+1]_1 chr5:139046834-139046854 0.00061 11_[+1]_1 chr6:13465213-13465233 0.00073 10_[+1]_2 chr11:66233239-66233259 0.00073 9_[+1]_3 chr9:102278816-102278836 0.00073 8_[+1]_4 chr4:8195241-8195261 0.00073 1_[+1]_11 chr8:142067729-142067749 0.00073 10_[+1]_2 chr17:76125894-76125914 0.00073 6_[+1]_6 chr20:10303462-10303482 0.00087 3_[+1]_9 chr5:138716040-138716060 0.00087 1_[+1]_11 chr6:31553476-31553496 0.00087 5_[+1]_7 chr3:50592227-50592247 0.00098 11_[+1]_1 chr20:31156983-31157003 0.00098 4_[+1]_8 chr1:29181690-29181710 0.00098 7_[+1]_5 chr17:37773707-37773727 0.00098 1_[+1]_11 chr16:81864681-81864701 0.00098 12_[+1] chr15:74722277-74722297 0.00098 [+1]_12 chr22:24186419-24186439 0.00098 3_[+1]_9 chr6:33809817-33809837 0.0011 4_[+1]_8 chr1:245003144-245003164 0.0011 11_[+1]_1 chr11:67255582-67255602 0.0011 7_[+1]_5 chr2:217482312-217482332 0.0013 11_[+1]_1 chr20:37511408-37511428 0.0013 11_[+1]_1 chr20:50797013-50797033 0.0013 12_[+1] chr19:13970464-13970484 0.0015 8_[+1]_4 chr19:718736-718756 0.0015 9_[+1]_3 chr10:112531445-11253146 0.0015 1_[+1]_11 chr1:12249279-12249299 0.0015 4_[+1]_8 chr9:117224021-117224041 0.0015 7_[+1]_5 chr3:183260337-183260357 0.0017 3_[+1]_9 chr8:142414813-142414833 0.002 1_[+1]_11 chr19:10038261-10038281 0.0023 4_[+1]_8 chr1:33764431-33764451 0.0026 2_[+1]_10 chr12:118735291-11873531 0.0028 12_[+1] chr10:121066695-12106671 0.0031 9_[+1]_3 chr14:52334494-52334514 0.0031 7_[+1]_5 chr22:30662519-30662539 0.0036 7_[+1]_5 chr10:100150962-10015098 0.0037 10_[+1]_2 chr22:25457282-25457302 0.0039 7_[+1]_5 chr19:7981738-7981758 0.0039 1_[+1]_11 chr2:9890863-9890883 0.0039 2_[+1]_10 chr16:57682532-57682552 0.0039 11_[+1]_1 chr11:117781494-11778151 0.0041 12_[+1] chr9:139402225-139402245 0.0041 10_[+1]_2 chr19:3184297-3184317 0.0041 11_[+1]_1 chr11:115944331-11594435 0.0044 10_[+1]_2 chr4:8145283-8145303 0.0047 8_[+1]_4 chr15:73089588-73089608 0.0051 11_[+1]_1 chr7:75849635-75849655 0.0057 2_[+1]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYTCCWGG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CYTCCWGG width=8 seqs=123 chr7:73433663-73433683 ( 13) CCTCCTGG 1 chr1:23965349-23965369 ( 12) CCTCCTGG 1 chr19:5695163-5695183 ( 11) CCTCCTGG 1 chr4:7257006-7257026 ( 9) CTTCCTGG 1 chr17:75423000-75423020 ( 7) CTTCCTGG 1 chr10:80673926-80673946 ( 13) CTTCCTGG 1 chr19:17886519-17886539 ( 7) CTTCCTGG 1 chr6:36696248-36696268 ( 7) CTTCCTGG 1 chr12:56137482-56137502 ( 2) CTTCCTGG 1 chr16:66550127-66550147 ( 3) CTTCCTGG 1 chr1:31224880-31224900 ( 9) CTTCCTGG 1 chr9:136295554-136295574 ( 7) CTTCCTGG 1 chr14:91819648-91819668 ( 8) CTTCCTGG 1 chr22:29789109-29789129 ( 8) CTTCCTGG 1 chr16:88546615-88546635 ( 12) CTTCCTGG 1 chr10:112294514-11229453 ( 8) CTTCCTGG 1 chr9:101946641-101946661 ( 7) CTTCCTGG 1 chr19:10449839-10449859 ( 6) CTTCCTGG 1 chr14:69282494-69282514 ( 3) CTTCCTGG 1 chr20:30951483-30951503 ( 12) CTTCCTGG 1 chr5:150017774-150017794 ( 9) CTTCCTGG 1 chr19:40921889-40921909 ( 8) CTTCCTGG 1 chr19:46139705-46139725 ( 12) CCTCCAGG 1 chr17:3816317-3816337 ( 11) CCTCCAGG 1 chr1:32215730-32215750 ( 11) CCTCCAGG 1 chr9:136689681-136689701 ( 3) CCTCCAGG 1 chr11:60857684-60857704 ( 4) CCTCCAGG 1 chr3:13110295-13110315 ( 8) CCTCCAGG 1 chr9:123681990-123682010 ( 10) CCTCCAGG 1 chr10:50386726-50386746 ( 9) CCTCCAGG 1 chr2:20422320-20422340 ( 13) CCTCCAGG 1 chr5:149535008-149535028 ( 7) CCTCCAGG 1 chr9:137237755-137237775 ( 9) CCTCCAGG 1 chr10:45869149-45869169 ( 7) CCTCCAGG 1 chr7:5421090-5421110 ( 3) CCTCCAGG 1 chr9:117112197-117112217 ( 3) CCTCCAGG 1 chr19:49414242-49414262 ( 13) CCTCCAGG 1 chr14:101014555-10101457 ( 9) CCTCCAGG 1 chr19:46117377-46117397 ( 5) CCTCCAGG 1 chr2:42996181-42996201 ( 3) CCTCCAGG 1 chr20:43273351-43273371 ( 10) CCTCCAGG 1 chr7:100223906-100223926 ( 5) CCTCCAGG 1 chr3:107456964-107456984 ( 5) CCTCCAGG 1 chr20:48429802-48429822 ( 6) CCTCCAGG 1 chr7:149569617-149569637 ( 11) CCTCCAGG 1 chr1:166844965-166844985 ( 10) CCTCCAGG 1 chr22:43667134-43667154 ( 5) CTTCCAGG 1 chr22:25809856-25809876 ( 5) CCTCCTAG 1 chr11:57088325-57088345 ( 13) CTTCCTTG 1 chr1:226988668-226988688 ( 8) CTTCCTTG 1 chr16:85275307-85275327 ( 9) CCTCCTAG 1 chr14:92711354-92711374 ( 2) CCTCCTAG 1 chr15:74720053-74720073 ( 10) CTTCCTTG 1 chr7:3083332-3083352 ( 11) CCTCCACG 1 chr2:26942330-26942350 ( 4) CCTCCATG 1 chr3:13082316-13082336 ( 12) CCTCCATG 1 chr7:28563404-28563424 ( 4) CCTCCATG 1 chr15:68521014-68521034 ( 11) CCTCCATG 1 chr1:156390236-156390256 ( 9) CTTCCACG 1 chr1:31228373-31228393 ( 7) CCTCCTGC 1 chr22:27054350-27054370 ( 13) CCTCCAAG 1 chr5:171483190-171483210 ( 5) CCTCCAAG 1 chr22:45478901-45478921 ( 11) CCTCCAAG 1 chr3:196756307-196756327 ( 12) CCTCCAAG 1 chr10:105335984-10533600 ( 5) CTTCCTGT 1 chr3:127392137-127392157 ( 9) CTTCCTGT 1 chr4:189852159-189852179 ( 5) CTTCCAGC 1 chr15:63792626-63792646 ( 1) CTTCCCGG 1 chr11:64036709-64036729 ( 12) CCTCCTCC 1 chr3:122664269-122664289 ( 10) CCTCCTCC 1 chr19:5315163-5315183 ( 13) CCTCCTCC 1 chr9:136791794-136791814 ( 11) CCTCCTCC 1 chr11:68224884-68224904 ( 8) CCTCCTCC 1 chr12:124991913-12499193 ( 13) CCTCCTCC 1 chr11:2187438-2187458 ( 12) CCTCCTCC 1 chr5:139046834-139046854 ( 12) CCTCCTCC 1 chr6:13465213-13465233 ( 11) CCTCCTCT 1 chr11:66233239-66233259 ( 10) CCTCCTCT 1 chr9:102278816-102278836 ( 9) CCTCCTCT 1 chr4:8195241-8195261 ( 2) CCTCCTCT 1 chr8:142067729-142067749 ( 11) CCTCCTCT 1 chr17:76125894-76125914 ( 7) CCTCCTCT 1 chr20:10303462-10303482 ( 4) CTACCTGG 1 chr5:138716040-138716060 ( 2) CCTCCACC 1 chr6:31553476-31553496 ( 6) CCTCCTAC 1 chr3:50592227-50592247 ( 12) CCTCCCTG 1 chr20:31156983-31157003 ( 5) CCTCCCTG 1 chr1:29181690-29181710 ( 8) CCTCCCTG 1 chr17:37773707-37773727 ( 2) CCACCAGG 1 chr16:81864681-81864701 ( 13) CCTCCCTG 1 chr15:74722277-74722297 ( 1) CCTCCCTG 1 chr22:24186419-24186439 ( 4) CCTCCCTG 1 chr6:33809817-33809837 ( 5) CTTCCTTT 1 chr1:245003144-245003164 ( 12) CCTCCACT 1 chr11:67255582-67255602 ( 8) CCTCTAGG 1 chr2:217482312-217482332 ( 12) CCTCCCAG 1 chr20:37511408-37511428 ( 12) CCTCCCAG 1 chr20:50797013-50797033 ( 13) CTTCTAGG 1 chr19:13970464-13970484 ( 9) CTTCCCAG 1 chr19:718736-718756 ( 10) CTGCCTGG 1 chr10:112531445-11253146 ( 2) CTGCCTGG 1 chr1:12249279-12249299 ( 5) CTGCCTGG 1 chr9:117224021-117224041 ( 8) CTTCCCAG 1 chr3:183260337-183260357 ( 4) CTGCCAGG 1 chr8:142414813-142414833 ( 2) CCTCAAGG 1 chr19:10038261-10038281 ( 5) CCTCCCCC 1 chr1:33764431-33764451 ( 3) CTACCAAG 1 chr12:118735291-11873531 ( 13) CTTCCGGG 1 chr10:121066695-12106671 ( 10) TTTCCTGG 1 chr14:52334494-52334514 ( 8) CCTCCCTT 1 chr22:30662519-30662539 ( 8) CCCCCTGG 1 chr10:100150962-10015098 ( 11) CCACCTCC 1 chr22:25457282-25457302 ( 8) CCACCTTC 1 chr19:7981738-7981758 ( 2) CTGCCAGC 1 chr2:9890863-9890883 ( 3) CCTCCTCA 1 chr16:57682532-57682552 ( 12) CCTCTTCC 1 chr11:117781494-11778151 ( 13) CTACCTCC 1 chr9:139402225-139402245 ( 11) CCACCTCT 1 chr19:3184297-3184317 ( 12) CCTCTTTC 1 chr11:115944331-11594435 ( 11) CTTCTTCC 1 chr4:8145283-8145303 ( 9) CTACTTGG 1 chr15:73089588-73089608 ( 12) CCGCCTCC 1 chr7:75849635-75849655 ( 3) CTTCACGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYTCCWGG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 4.62003 E= 6.1e-099 -1359 175 -1359 -474 -1359 110 -1359 75 -170 -518 -250 201 -1359 176 -1359 -1359 -369 166 -1359 -216 80 -138 -508 123 -99 -48 98 -66 -469 -79 139 -116 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYTCCWGG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 123 E= 6.1e-099 0.000000 0.991870 0.000000 0.008130 0.000000 0.634146 0.000000 0.365854 0.065041 0.008130 0.048780 0.878049 0.000000 1.000000 0.000000 0.000000 0.016260 0.934959 0.000000 0.048780 0.365854 0.113821 0.008130 0.512195 0.105691 0.211382 0.544715 0.138211 0.008130 0.170732 0.723577 0.097561 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYTCCWGG MEME-1 regular expression -------------------------------------------------------------------------------- C[CT]TCC[TA][GC]G -------------------------------------------------------------------------------- Time 4.48 secs. ******************************************************************************** ******************************************************************************** MOTIF AGGAGGTG MEME-2 width = 8 sites = 44 llr = 349 E-value = 2.1e-036 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGGAGGTG MEME-2 Description -------------------------------------------------------------------------------- Simplified A 9::a2:12 pos.-specific C ::::::31 probability G :aa:8a:7 matrix T 1:::::6: bits 2.2 2.0 * 1.8 ** * * 1.6 **** * Relative 1.3 ****** Entropy 1.1 ****** (11.4 bits) 0.9 ****** 0.7 ****** * 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGGAGGTG consensus CA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGAGGTG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:9377272-9377292 4 1.55e-05 tgg aggaggtg atgctgaaa chr6:43237103-43237123 4 1.55e-05 CGG AGGAGGTG AGTGACCAT chr12:108703821-10870384 4 1.55e-05 tgg aggaggtg gcatttgag chr4:8115694-8115714 8 1.55e-05 ttctggg aggaggtg acata chr20:31156983-31157003 13 1.55e-05 ggcctccctg aggaggtg chr7:75849635-75849655 11 1.55e-05 ggcttcacgg aggaggtg at chr10:112531445-11253146 10 1.55e-05 gctgcctgg aggaggtg tcc chr16:66550127-66550147 11 1.55e-05 ggcttcctgg aggaggtg ac chr1:23916740-23916760 5 1.55e-05 ctga aggaggtg agtcctgg chr14:92907136-92907156 7 1.55e-05 tcatgg aggaggtg gcattg chr15:68572881-68572901 6 1.55e-05 cacag aggaggtg acgttcg chr1:38559447-38559467 2 1.55e-05 g aggaggtg acattcagct chr9:130734102-130734122 2 1.55e-05 g aggaggtg actcttaggc chr14:93143246-93143266 6 1.55e-05 cctgg aggaggtg acatctg chr17:17709510-17709530 4 1.55e-05 agg aggaggtg acatttaag chr1:206712416-206712436 1 1.55e-05 . aggaggtg atgtttgatt chr7:102032979-102032999 2 2.74e-05 g aggaggta gcattttggc chrX:152677082-152677102 2 4.85e-05 G AGGAGGCG GCGGCCTTGG chr16:22190053-22190073 7 7.54e-05 ccctgg aggaagtg atgtct chr16:11707483-11707503 4 7.54e-05 agg aggaagtg gctcttgtt chr19:19266813-19266833 11 9.15e-05 TTCTTGGGGG AGGAGGCA TG chr20:10303462-10303482 12 9.15e-05 ggctacctgg aggaggca g chr11:67809339-67809359 1 9.15e-05 . aggaggca tgggccaagt chr16:85173557-85173577 3 9.15e-05 gg aggaggca tttaagccga chr22:38056822-38056842 5 9.15e-05 CTGG AGGAGGCA TGATGCAG chr1:12249279-12249299 13 9.15e-05 ggctgcctgg aggaggca chr18:20850062-20850082 6 1.29e-04 ggcct aggaggaa aaaatgg chr16:81710793-81710813 7 1.80e-04 TCCTGG AGGAGGGG ACCTGC chr19:50396179-50396199 1 1.80e-04 . aggagggg acattggagc chr17:75440146-75440166 2 1.80e-04 c tggaggtg gtgacatttA chr22:50912357-50912377 6 1.92e-04 ctggg aggaagag gtgagat chr3:52058507-52058527 8 1.92e-04 ttcctgg aggaagag gcata chr19:4844561-4844581 4 2.25e-04 AAA AGCAGGTG AGGCTAGGG chr20:855069-855089 4 2.25e-04 CAG AGGTGGTG GTGGCAGAA chr15:85148648-85148668 12 2.59e-04 acacctaagc aggaggtt g chr12:56137482-56137502 10 3.28e-04 ACTTCCTGG AGGAGGAC GAG chr11:120489295-12048931 2 3.28e-04 t aggaggac ataatggtgt chr1:228222836-228222856 4 4.04e-04 cag gggaggtg gcccctggg chr10:88466906-88466926 13 4.47e-04 gaaggctcca tggaggag chr3:196226869-196226889 4 5.64e-04 aat agcaagtg ttggcgagg chr19:10038261-10038281 13 6.19e-04 cacctccccc aggaagcc chr22:37710515-37710535 3 6.19e-04 CC TGGAGGCA GTGGCTGAGC chr4:8195241-8195261 13 6.19e-04 ctcctctttc aggaagcc chr1:12248418-12248438 4 7.52e-04 cag aggtggca gcactcatc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGAGGTG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:9377272-9377292 1.6e-05 3_[+2]_9 chr6:43237103-43237123 1.6e-05 3_[+2]_9 chr12:108703821-10870384 1.6e-05 3_[+2]_9 chr4:8115694-8115714 1.6e-05 7_[+2]_5 chr20:31156983-31157003 1.6e-05 12_[+2] chr7:75849635-75849655 1.6e-05 10_[+2]_2 chr10:112531445-11253146 1.6e-05 9_[+2]_3 chr16:66550127-66550147 1.6e-05 10_[+2]_2 chr1:23916740-23916760 1.6e-05 4_[+2]_8 chr14:92907136-92907156 1.6e-05 6_[+2]_6 chr15:68572881-68572901 1.6e-05 5_[+2]_7 chr1:38559447-38559467 1.6e-05 1_[+2]_11 chr9:130734102-130734122 1.6e-05 1_[+2]_11 chr14:93143246-93143266 1.6e-05 5_[+2]_7 chr17:17709510-17709530 1.6e-05 3_[+2]_9 chr1:206712416-206712436 1.6e-05 [+2]_12 chr7:102032979-102032999 2.7e-05 1_[+2]_11 chrX:152677082-152677102 4.8e-05 1_[+2]_11 chr16:22190053-22190073 7.5e-05 6_[+2]_6 chr16:11707483-11707503 7.5e-05 3_[+2]_9 chr19:19266813-19266833 9.1e-05 10_[+2]_2 chr20:10303462-10303482 9.1e-05 11_[+2]_1 chr11:67809339-67809359 9.1e-05 [+2]_12 chr16:85173557-85173577 9.1e-05 2_[+2]_10 chr22:38056822-38056842 9.1e-05 4_[+2]_8 chr1:12249279-12249299 9.1e-05 12_[+2] chr18:20850062-20850082 0.00013 5_[+2]_7 chr16:81710793-81710813 0.00018 6_[+2]_6 chr19:50396179-50396199 0.00018 [+2]_12 chr17:75440146-75440166 0.00018 1_[+2]_11 chr22:50912357-50912377 0.00019 5_[+2]_7 chr3:52058507-52058527 0.00019 7_[+2]_5 chr19:4844561-4844581 0.00022 3_[+2]_9 chr20:855069-855089 0.00022 3_[+2]_9 chr15:85148648-85148668 0.00026 11_[+2]_1 chr12:56137482-56137502 0.00033 9_[+2]_3 chr11:120489295-12048931 0.00033 1_[+2]_11 chr1:228222836-228222856 0.0004 3_[+2]_9 chr10:88466906-88466926 0.00045 12_[+2] chr3:196226869-196226889 0.00056 3_[+2]_9 chr19:10038261-10038281 0.00062 12_[+2] chr22:37710515-37710535 0.00062 2_[+2]_10 chr4:8195241-8195261 0.00062 12_[+2] chr1:12248418-12248438 0.00075 3_[+2]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGAGGTG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGGAGGTG width=8 seqs=44 chr1:9377272-9377292 ( 4) AGGAGGTG 1 chr6:43237103-43237123 ( 4) AGGAGGTG 1 chr12:108703821-10870384 ( 4) AGGAGGTG 1 chr4:8115694-8115714 ( 8) AGGAGGTG 1 chr20:31156983-31157003 ( 13) AGGAGGTG 1 chr7:75849635-75849655 ( 11) AGGAGGTG 1 chr10:112531445-11253146 ( 10) AGGAGGTG 1 chr16:66550127-66550147 ( 11) AGGAGGTG 1 chr1:23916740-23916760 ( 5) AGGAGGTG 1 chr14:92907136-92907156 ( 7) AGGAGGTG 1 chr15:68572881-68572901 ( 6) AGGAGGTG 1 chr1:38559447-38559467 ( 2) AGGAGGTG 1 chr9:130734102-130734122 ( 2) AGGAGGTG 1 chr14:93143246-93143266 ( 6) AGGAGGTG 1 chr17:17709510-17709530 ( 4) AGGAGGTG 1 chr1:206712416-206712436 ( 1) AGGAGGTG 1 chr7:102032979-102032999 ( 2) AGGAGGTA 1 chrX:152677082-152677102 ( 2) AGGAGGCG 1 chr16:22190053-22190073 ( 7) AGGAAGTG 1 chr16:11707483-11707503 ( 4) AGGAAGTG 1 chr19:19266813-19266833 ( 11) AGGAGGCA 1 chr20:10303462-10303482 ( 12) AGGAGGCA 1 chr11:67809339-67809359 ( 1) AGGAGGCA 1 chr16:85173557-85173577 ( 3) AGGAGGCA 1 chr22:38056822-38056842 ( 5) AGGAGGCA 1 chr1:12249279-12249299 ( 13) AGGAGGCA 1 chr18:20850062-20850082 ( 6) AGGAGGAA 1 chr16:81710793-81710813 ( 7) AGGAGGGG 1 chr19:50396179-50396199 ( 1) AGGAGGGG 1 chr17:75440146-75440166 ( 2) TGGAGGTG 1 chr22:50912357-50912377 ( 6) AGGAAGAG 1 chr3:52058507-52058527 ( 8) AGGAAGAG 1 chr19:4844561-4844581 ( 4) AGCAGGTG 1 chr20:855069-855089 ( 4) AGGTGGTG 1 chr15:85148648-85148668 ( 12) AGGAGGTT 1 chr12:56137482-56137502 ( 10) AGGAGGAC 1 chr11:120489295-12048931 ( 2) AGGAGGAC 1 chr1:228222836-228222856 ( 4) GGGAGGTG 1 chr10:88466906-88466926 ( 13) TGGAGGAG 1 chr3:196226869-196226889 ( 4) AGCAAGTG 1 chr19:10038261-10038281 ( 13) AGGAAGCC 1 chr22:37710515-37710535 ( 3) TGGAGGCA 1 chr4:8195241-8195261 ( 13) AGGAAGCC 1 chr1:12248418-12248438 ( 4) AGGTGGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGAGGTG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.73346 E= 2.1e-036 211 -1210 -360 -168 -1210 -1210 186 -1210 -1210 -270 179 -1210 218 -1210 -1210 -226 -40 -1210 161 -1210 -1210 -1210 186 -1210 -63 -24 -260 138 11 -170 126 -326 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGAGGTG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 44 E= 2.1e-036 0.909091 0.000000 0.022727 0.068182 0.000000 0.000000 1.000000 0.000000 0.000000 0.045455 0.954545 0.000000 0.954545 0.000000 0.000000 0.045455 0.159091 0.000000 0.840909 0.000000 0.000000 0.000000 1.000000 0.000000 0.136364 0.250000 0.045455 0.568182 0.227273 0.090909 0.659091 0.022727 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGAGGTG MEME-2 regular expression -------------------------------------------------------------------------------- AGGAGG[TC][GA] -------------------------------------------------------------------------------- Time 7.44 secs. ******************************************************************************** ******************************************************************************** MOTIF AAGCCYTC MEME-3 width = 8 sites = 14 llr = 134 E-value = 5.2e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAGCCYTC MEME-3 Description -------------------------------------------------------------------------------- Simplified A aa:::::: pos.-specific C :::9a4:a probability G ::a1::1: matrix T :::1:69: bits 2.2 ** 2.0 ** 1.8 *** * ** 1.6 *** * ** Relative 1.3 *** * ** Entropy 1.1 ******** (13.8 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAGCCTTC consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGCCYTC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:183260337-183260357 12 1.50e-05 ctctgccagg aagccttc t chr11:60857684-60857704 12 1.50e-05 cccctccagg aagccttc c chr5:171483190-171483210 13 1.50e-05 ctcctccaag aagccttc chr1:181463213-181463233 11 1.50e-05 ttcctctgtg aagccttc ct chr7:28563404-28563424 12 1.50e-05 cacctccatg aagccttc t chr2:42996181-42996201 11 1.50e-05 ctcctccagg aagccttc ct chr22:43667134-43667154 13 3.53e-05 ctcttccagg aagccctc chr2:26942330-26942350 12 3.53e-05 ctcctccatg aagccctc c chr7:5421090-5421110 11 3.53e-05 ttcctccagg aagccctc cc chr9:117112197-117112217 11 3.53e-05 ttcctccagg aagccctc cc chr19:46117377-46117397 13 3.53e-05 ttcctccagg aagccctc chr9:136689681-136689701 11 6.04e-05 ctcctccagg aaggcttc ct chr17:37773707-37773727 10 7.54e-05 tccaccagg aagtcctc cct chr9:132003259-132003279 2 9.44e-05 g aagcctgc cctgattgcc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGCCYTC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:183260337-183260357 1.5e-05 11_[+3]_1 chr11:60857684-60857704 1.5e-05 11_[+3]_1 chr5:171483190-171483210 1.5e-05 12_[+3] chr1:181463213-181463233 1.5e-05 10_[+3]_2 chr7:28563404-28563424 1.5e-05 11_[+3]_1 chr2:42996181-42996201 1.5e-05 10_[+3]_2 chr22:43667134-43667154 3.5e-05 12_[+3] chr2:26942330-26942350 3.5e-05 11_[+3]_1 chr7:5421090-5421110 3.5e-05 10_[+3]_2 chr9:117112197-117112217 3.5e-05 10_[+3]_2 chr19:46117377-46117397 3.5e-05 12_[+3] chr9:136689681-136689701 6e-05 10_[+3]_2 chr17:37773707-37773727 7.5e-05 9_[+3]_3 chr9:132003259-132003279 9.4e-05 1_[+3]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGCCYTC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAGCCYTC width=8 seqs=14 chr3:183260337-183260357 ( 12) AAGCCTTC 1 chr11:60857684-60857704 ( 12) AAGCCTTC 1 chr5:171483190-171483210 ( 13) AAGCCTTC 1 chr1:181463213-181463233 ( 11) AAGCCTTC 1 chr7:28563404-28563424 ( 12) AAGCCTTC 1 chr2:42996181-42996201 ( 11) AAGCCTTC 1 chr22:43667134-43667154 ( 13) AAGCCCTC 1 chr2:26942330-26942350 ( 12) AAGCCCTC 1 chr7:5421090-5421110 ( 11) AAGCCCTC 1 chr9:117112197-117112217 ( 11) AAGCCCTC 1 chr19:46117377-46117397 ( 13) AAGCCCTC 1 chr9:136689681-136689701 ( 11) AAGGCTTC 1 chr17:37773707-37773727 ( 10) AAGTCCTC 1 chr9:132003259-132003279 ( 2) AAGCCTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGCCYTC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.4605 E= 5.2e-007 225 -1045 -1045 -1045 225 -1045 -1045 -1045 -1045 -1045 186 -1045 -1045 154 -195 -161 -1045 176 -1045 -1045 -1045 54 -1045 139 -1045 -1045 -195 209 -1045 176 -1045 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGCCYTC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 5.2e-007 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.857143 0.071429 0.071429 0.000000 1.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.571429 0.000000 0.000000 0.071429 0.928571 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGCCYTC MEME-3 regular expression -------------------------------------------------------------------------------- AAGCC[TC]TC -------------------------------------------------------------------------------- Time 10.41 secs. ******************************************************************************** ******************************************************************************** MOTIF CCAGGAAG MEME-4 width = 8 sites = 15 llr = 126 E-value = 2.6e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCAGGAAG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :27:189: pos.-specific C a8:::2:: probability G ::399:1a matrix T ::11:::: bits 2.2 2.0 1.8 * ** 1.6 * ** ** Relative 1.3 * ***** Entropy 1.1 ** ***** (12.1 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCAGGAAG consensus AG C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGGAAG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:73433663-73433683 4 1.72e-05 CCT CCAGGAAG CCCTCCTGG chr2:217482312-217482332 3 1.72e-05 CT CCAGGAAG TCCTCCCAGC chr19:5695163-5695183 2 1.72e-05 t ccaggaag gcctcctggt chr15:74720053-74720073 1 1.72e-05 . CCAGGAAG CCTTCCTTGA chr16:88546615-88546635 3 1.72e-05 ct ccaggaag ccttcctgga chr3:50592227-50592247 3 7.60e-05 CT CCAGGCAG GCCTCCCTGA chr19:18404175-18404195 6 7.60e-05 GGCAC CCAGGCAG GCTCCCG chr19:7715215-7715235 11 9.21e-05 tgggggcaat cagggaag gc chr20:30951483-30951503 3 9.21e-05 at cagggaag gcttcctgga chr20:37511408-37511428 3 9.21e-05 at cagggaag gcctcccaga chr19:718736-718756 1 1.10e-04 . CCTGGAAG GCTGCCTGGA chr12:58039837-58039857 5 1.37e-04 caaa ccagaaag tccaagca chr11:57088325-57088345 4 1.37e-04 ctt ccatgaag ccttccttg chr10:125754707-12575472 8 1.85e-04 GAGGAAT CCGGGCAG CCATC chr10:80673926-80673946 4 2.08e-04 CAT CCAGGAGG GCTTCCTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGGAAG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:73433663-73433683 1.7e-05 3_[+4]_9 chr2:217482312-217482332 1.7e-05 2_[+4]_10 chr19:5695163-5695183 1.7e-05 1_[+4]_11 chr15:74720053-74720073 1.7e-05 [+4]_12 chr16:88546615-88546635 1.7e-05 2_[+4]_10 chr3:50592227-50592247 7.6e-05 2_[+4]_10 chr19:18404175-18404195 7.6e-05 5_[+4]_7 chr19:7715215-7715235 9.2e-05 10_[+4]_2 chr20:30951483-30951503 9.2e-05 2_[+4]_10 chr20:37511408-37511428 9.2e-05 2_[+4]_10 chr19:718736-718756 0.00011 [+4]_12 chr12:58039837-58039857 0.00014 4_[+4]_8 chr11:57088325-57088345 0.00014 3_[+4]_9 chr10:125754707-12575472 0.00019 7_[+4]_5 chr10:80673926-80673946 0.00021 3_[+4]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGGAAG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCAGGAAG width=8 seqs=15 chr7:73433663-73433683 ( 4) CCAGGAAG 1 chr2:217482312-217482332 ( 3) CCAGGAAG 1 chr19:5695163-5695183 ( 2) CCAGGAAG 1 chr15:74720053-74720073 ( 1) CCAGGAAG 1 chr16:88546615-88546635 ( 3) CCAGGAAG 1 chr3:50592227-50592247 ( 3) CCAGGCAG 1 chr19:18404175-18404195 ( 6) CCAGGCAG 1 chr19:7715215-7715235 ( 11) CAGGGAAG 1 chr20:30951483-30951503 ( 3) CAGGGAAG 1 chr20:37511408-37511428 ( 3) CAGGGAAG 1 chr19:718736-718756 ( 1) CCTGGAAG 1 chr12:58039837-58039857 ( 5) CCAGAAAG 1 chr11:57088325-57088345 ( 4) CCATGAAG 1 chr10:125754707-12575472 ( 8) CCGGGCAG 1 chr10:80673926-80673946 ( 4) CCAGGAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGGAAG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.42938 E= 2.6e-001 -1055 176 -1055 -1055 -7 144 -1055 -1055 166 -1055 -5 -171 -1055 -1055 176 -171 -166 -1055 176 -1055 192 -56 -1055 -1055 215 -1055 -205 -1055 -1055 -1055 186 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGGAAG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 2.6e-001 0.000000 1.000000 0.000000 0.000000 0.200000 0.800000 0.000000 0.000000 0.666667 0.000000 0.266667 0.066667 0.000000 0.000000 0.933333 0.066667 0.066667 0.000000 0.933333 0.000000 0.800000 0.200000 0.000000 0.000000 0.933333 0.000000 0.066667 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGGAAG MEME-4 regular expression -------------------------------------------------------------------------------- C[CA][AG]GG[AC]AG -------------------------------------------------------------------------------- Time 11.43 secs. ******************************************************************************** ******************************************************************************** MOTIF TGACTTAC MEME-5 width = 8 sites = 4 llr = 44 E-value = 1.7e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGACTTAC MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::a:::a: pos.-specific C :::a:::8 probability G :a:::::: matrix T a:::aa:3 bits 2.2 * * *** 2.0 * * *** 1.8 ******* 1.6 ******* Relative 1.3 ******* Entropy 1.1 ******** (15.8 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGACTTAC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACTTAC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr14:100470916-10047093 4 1.11e-05 ttg tgacttac atacaccat chr3:58677924-58677944 1 1.11e-05 . tgacttac gctgaccatt chr19:35876970-35876990 6 1.11e-05 gtgta tgacttac atagacc chr1:67715944-67715964 3 1.93e-05 ca tgacttat gcagaccatc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACTTAC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr14:100470916-10047093 1.1e-05 3_[+5]_9 chr3:58677924-58677944 1.1e-05 [+5]_12 chr19:35876970-35876990 1.1e-05 5_[+5]_7 chr1:67715944-67715964 1.9e-05 2_[+5]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACTTAC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGACTTAC width=8 seqs=4 chr14:100470916-10047093 ( 4) TGACTTAC 1 chr3:58677924-58677944 ( 1) TGACTTAC 1 chr19:35876970-35876990 ( 6) TGACTTAC 1 chr1:67715944-67715964 ( 3) TGACTTAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACTTAC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.66445 E= 1.7e+003 -865 -865 -865 219 -865 -865 185 -865 224 -865 -865 -865 -865 176 -865 -865 -865 -865 -865 219 -865 -865 -865 219 224 -865 -865 -865 -865 134 -865 20 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACTTAC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.7e+003 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.750000 0.000000 0.250000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACTTAC MEME-5 regular expression -------------------------------------------------------------------------------- TGACTTA[CT] -------------------------------------------------------------------------------- Time 12.00 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:76125894-76125914 9.31e-02 20 chr1:166844965-166844985 3.20e-05 12_[+4(1.72e-05)] chr1:206712416-206712436 2.91e-02 [+2(1.55e-05)]_12 chr22:30662519-30662539 3.74e-04 20 chr3:196756307-196756327 2.44e-02 20 chr19:17961174-17961194 8.39e-01 20 chr15:68521014-68521034 4.93e-02 20 chr22:24186419-24186439 1.76e-01 20 chr7:149569617-149569637 1.01e-02 10_[+1(7.42e-05)]_2 chr20:44486711-44486731 7.71e-01 20 chr7:3083332-3083352 1.42e-01 20 chr19:3184297-3184317 3.71e-01 20 chr17:17709510-17709530 3.02e-03 3_[+2(1.55e-05)]_9 chr15:74722277-74722297 1.78e-01 20 chr1:31228373-31228393 1.54e-01 20 chr20:48429802-48429822 5.82e-06 8_[+4(1.72e-05)]_4 chr14:93143246-93143266 3.44e-04 5_[+2(1.55e-05)]_7 chr19:40921889-40921909 2.85e-06 7_[+1(4.77e-05)]_5 chr17:1732707-1732727 1.29e-01 20 chr3:107456964-107456984 2.33e-07 7_[+4(1.72e-05)]_5 chr7:100223906-100223926 6.68e-05 4_[+1(7.42e-05)]_8 chr9:130734102-130734122 5.57e-03 1_[+2(1.55e-05)]_11 chr20:49416745-49416765 4.54e-02 20 chr22:45478901-45478921 4.82e-02 20 chr5:150017774-150017794 2.01e-06 8_[+1(4.77e-05)]_4 chr20:6750637-6750657 1.53e-01 20 chr5:139046834-139046854 9.61e-02 20 chr15:73089588-73089608 1.24e-01 20 chr9:117224021-117224041 3.15e-05 3_[+3(4.64e-05)]_9 chr16:81864681-81864701 3.04e-03 20 chr20:43273351-43273371 2.30e-05 12_[+4(1.72e-05)] chr20:37511408-37511428 1.07e-05 2_[+4(9.21e-05)]_10 chr17:1360474-1360494 4.85e-01 20 chr11:67255582-67255602 1.52e-03 20 chr2:42996181-42996201 3.50e-09 2_[+1(7.42e-05)]_[+3(1.50e-05)]_2 chr8:142067729-142067749 9.14e-02 20 chr14:105647106-10564712 3.72e-02 20 chr19:3556569-3556589 7.97e-01 20 chr1:41706066-41706086 2.84e-01 20 chr17:70584125-70584145 9.75e-01 20 chr20:30951483-30951503 1.71e-07 2_[+4(9.21e-05)]_1_[+1(4.77e-05)]_1 chr17:37773707-37773727 1.76e-07 4_[+4(1.72e-05)]_8 chr14:69282494-69282514 2.81e-03 2_[+1(4.77e-05)]_10 chr12:118735291-11873531 3.59e-03 20 chr19:46117377-46117397 2.19e-08 4_[+1(7.42e-05)]_[+3(3.53e-05)] chr11:73051436-73051456 4.25e-01 20 chr1:245003144-245003164 1.96e-02 20 chr14:101014555-10101457 1.90e-04 8_[+1(7.42e-05)]_4 chr19:10449839-10449859 5.10e-08 5_[+1(4.77e-05)]_7 chr9:139402225-139402245 2.77e-01 20 chr19:57610784-57610804 2.69e-01 20 chr7:55455444-55455464 9.71e-01 20 chr15:85148648-85148668 2.83e-02 20 chr7:28563404-28563424 9.66e-07 11_[+3(1.50e-05)]_1 chr1:12249279-12249299 3.27e-05 12_[+2(9.15e-05)] chr11:117781494-11778151 3.23e-01 20 chr16:57682532-57682552 2.31e-01 20 chr1:117130327-117130347 1.29e-01 20 chr4:112996517-112996537 7.50e-01 20 chr19:49414242-49414262 1.60e-02 12_[+1(7.42e-05)] chr12:32002185-32002205 9.11e-01 20 chr11:2187438-2187458 1.21e-01 20 chr9:101946641-101946661 1.31e-05 6_[+1(4.77e-05)]_6 chr12:124991913-12499193 8.02e-02 20 chr4:8195241-8195261 1.71e-03 20 chr17:75440146-75440166 5.64e-02 20 chr12:122226284-12222630 8.44e-01 20 chr9:117112197-117112217 1.82e-08 2_[+1(7.42e-05)]_[+3(3.53e-05)]_2 chr1:38559447-38559467 4.71e-03 1_[+2(1.55e-05)]_11 chr7:5421090-5421110 1.82e-08 2_[+1(7.42e-05)]_[+3(3.53e-05)]_2 chr9:102278816-102278836 3.96e-02 20 chr10:112294514-11229453 3.94e-07 7_[+1(4.77e-05)]_5 chr11:72142227-72142247 2.52e-01 20 chr16:88546615-88546635 2.38e-09 7_[+3(1.50e-05)]_5 chr15:74720053-74720073 9.41e-09 5_[+3(1.50e-05)]_7 chr10:45869149-45869169 2.69e-06 9_[+4(1.72e-05)]_3 chr19:16186345-16186365 5.72e-01 20 chr2:9890863-9890883 6.40e-02 20 chr22:29789109-29789129 1.61e-07 3_[+3(4.64e-05)]_9 chr15:68572881-68572901 4.06e-03 5_[+2(1.55e-05)]_7 chr14:92907136-92907156 2.02e-03 6_[+2(1.55e-05)]_6 chr16:725376-725396 2.33e-01 20 chr7:73629546-73629566 9.51e-01 20 chr16:11707483-11707503 2.19e-02 3_[+2(7.54e-05)]_9 chr19:18221261-18221281 2.72e-01 20 chr12:94569742-94569762 3.73e-01 20 chr9:137237755-137237775 1.33e-04 11_[+4(1.72e-05)]_1 chr19:3275815-3275835 8.66e-01 20 chr8:85553224-85553244 9.29e-01 20 chr14:91819648-91819668 1.72e-06 3_[+3(1.50e-05)]_9 chr5:149535008-149535028 1.04e-06 9_[+4(1.72e-05)]_3 chr6:138428203-138428223 3.79e-01 20 chr10:55899735-55899755 4.21e-01 20 chr11:120489295-12048931 6.64e-02 20 chr22:38056822-38056842 5.14e-02 4_[+2(9.15e-05)]_8 chr20:855069-855089 1.50e-01 20 chr1:2574074-2574094 1.59e-01 20 chr3:196226869-196226889 1.35e-01 20 chr11:115944331-11594435 1.67e-01 20 chr1:23916740-23916760 1.85e-03 4_[+2(1.55e-05)]_8 chr16:85061786-85061806 7.39e-01 20 chr19:35876970-35876990 1.24e-02 5_[+5(1.11e-05)]_7 chr19:5695163-5695183 4.00e-08 1_[+4(1.72e-05)]_1_[+1(2.74e-05)]_2 chr19:7981738-7981758 4.13e-01 20 chr9:136295554-136295574 3.01e-06 6_[+1(4.77e-05)]_6 chr1:31224880-31224900 3.65e-04 8_[+1(4.77e-05)]_4 chr8:117081604-117081624 3.71e-01 20 chr13:113900913-11390093 8.52e-02 20 chr1:55452406-55452426 8.10e-01 20 chr16:66550127-66550147 8.90e-06 2_[+1(4.77e-05)]_[+2(1.55e-05)]_2 chr6:114301359-114301379 9.38e-01 20 chr2:20422320-20422340 2.95e-02 12_[+1(7.42e-05)] chr19:13955605-13955625 2.04e-01 20 chr22:37882798-37882818 2.16e-01 20 chr11:35147771-35147791 1.43e-01 20 chr1:29181690-29181710 1.75e-03 20 chr10:112531445-11253146 6.13e-05 9_[+2(1.55e-05)]_3 chr12:56137482-56137502 7.64e-05 1_[+1(4.77e-05)]_11 chr16:67481651-67481671 3.12e-01 20 chr1:33764431-33764451 1.94e-02 20 chr1:248877735-248877755 6.81e-01 20 chr6:36696248-36696268 1.84e-05 6_[+1(4.77e-05)]_6 chr3:10395025-10395045 7.59e-01 20 chr11:68224884-68224904 6.42e-02 20 chr8:142414813-142414833 7.83e-02 20 chr10:50386726-50386746 3.53e-05 11_[+4(1.72e-05)]_1 chr1:21900537-21900557 6.70e-01 20 chr10:125754707-12575472 1.37e-02 20 chr7:75849635-75849655 1.25e-03 10_[+2(1.55e-05)]_2 chr19:4844561-4844581 1.23e-01 20 chr9:140840200-140840220 7.52e-01 20 chr20:31156983-31157003 3.03e-05 12_[+2(1.55e-05)] chr1:25868153-25868173 2.38e-01 20 chr9:123681990-123682010 6.12e-05 12_[+4(1.72e-05)] chr16:22190053-22190073 2.49e-03 6_[+2(7.54e-05)]_6 chr3:52058507-52058527 9.82e-03 20 chr19:7715215-7715235 3.05e-02 10_[+4(9.21e-05)]_2 chr19:18404175-18404195 7.55e-03 5_[+4(7.60e-05)]_7 chr11:66233239-66233259 9.50e-02 20 chr1:181463213-181463233 6.07e-04 10_[+3(1.50e-05)]_2 chr19:17886519-17886539 2.03e-06 6_[+1(4.77e-05)]_6 chr18:20850062-20850082 4.01e-02 20 chr17:75243879-75243899 5.98e-01 20 chr4:8115694-8115714 1.30e-02 7_[+2(1.55e-05)]_5 chr9:132003259-132003279 1.10e-02 1_[+3(9.44e-05)]_11 chr6:31553476-31553496 1.29e-02 20 chr14:94466814-94466834 4.88e-01 20 chr6:13465213-13465233 7.87e-02 20 chr21:46746979-46746999 5.92e-01 20 chr1:156390236-156390256 3.33e-02 20 chr14:92711354-92711374 3.03e-02 20 chr10:80673926-80673946 1.13e-06 12_[+1(4.77e-05)] chr3:127392137-127392157 7.18e-04 20 chr12:108703821-10870384 1.71e-02 3_[+2(1.55e-05)]_9 chr15:63792626-63792646 9.10e-03 20 chr5:171483190-171483210 2.14e-05 12_[+3(1.50e-05)] chr3:13082316-13082336 2.70e-02 20 chr3:13110295-13110315 1.04e-06 10_[+4(1.72e-05)]_2 chr19:4585749-4585769 4.72e-01 20 chr11:60857684-60857704 3.50e-09 3_[+1(7.42e-05)]_[+3(1.50e-05)]_1 chr8:42965650-42965670 6.62e-01 20 chr1:23965349-23965369 1.53e-06 11_[+1(2.74e-05)]_1 chr17:75423000-75423020 1.50e-07 6_[+1(4.77e-05)]_6 chr10:88466906-88466926 6.60e-04 20 chr17:10108959-10108979 9.77e-02 20 chr8:128932660-128932680 3.56e-01 20 chr1:151335020-151335040 5.47e-01 20 chrX:48542042-48542062 7.43e-01 20 chr16:85173557-85173577 1.84e-02 2_[+2(9.15e-05)]_10 chr12:100557801-10055782 4.88e-01 20 chr1:154579695-154579715 1.65e-01 20 chr19:49155072-49155092 4.42e-01 20 chr5:142764772-142764792 6.12e-01 20 chrX:152677082-152677102 2.06e-02 1_[+2(4.85e-05)]_11 chr7:102032979-102032999 2.95e-02 1_[+2(2.74e-05)]_11 chr10:100150962-10015098 4.82e-01 20 chr16:85275307-85275327 1.20e-02 20 chr22:25457282-25457302 5.88e-01 20 chr19:718736-718756 1.21e-05 20 chr9:136689681-136689701 2.23e-08 2_[+1(7.42e-05)]_[+3(6.04e-05)]_2 chr14:52334494-52334514 4.93e-03 20 chr2:239371608-239371628 7.18e-01 20 chr11:67809339-67809359 1.17e-01 [+2(9.15e-05)]_12 chr19:50396179-50396199 6.89e-02 20 chr18:46698799-46698819 4.87e-01 20 chr1:228222836-228222856 3.07e-02 20 chr1:25284323-25284343 2.81e-01 20 chr19:38754411-38754431 2.82e-01 20 chr9:136791794-136791814 1.40e-01 20 chr6:43237103-43237123 3.11e-03 3_[+2(1.55e-05)]_9 chr1:226988668-226988688 6.91e-06 3_[+3(1.50e-05)]_9 chr4:189852159-189852179 3.27e-03 20 chr2:195248328-195248348 6.86e-01 20 chr22:37710515-37710535 7.92e-03 20 chr19:13970464-13970484 9.40e-04 4_[+3(1.50e-05)]_8 chr20:50797013-50797033 7.41e-03 20 chr6:33047946-33047966 7.79e-01 20 chr3:183260337-183260357 6.60e-08 11_[+3(1.50e-05)]_1 chr19:4069698-4069718 9.56e-02 20 chr12:113506495-11350651 7.63e-01 20 chr1:32215730-32215750 2.02e-02 10_[+1(7.42e-05)]_2 chr19:42634896-42634916 5.02e-01 20 chr9:117156987-117157007 8.63e-01 20 chr1:41829404-41829424 5.71e-01 20 chr22:50912357-50912377 6.04e-02 20 chr5:138716040-138716060 1.85e-01 20 chr9:90070510-90070530 4.64e-01 20 chr3:58677924-58677944 4.11e-02 [+5(1.11e-05)]_12 chr1:9377272-9377292 3.29e-02 3_[+2(1.55e-05)]_9 chr6:33809817-33809837 1.05e-01 20 chr2:217482312-217482332 2.20e-07 2_[+4(1.72e-05)]_10 chr6:135703682-135703702 4.13e-01 20 chr19:5315163-5315183 1.68e-01 20 chr19:10038261-10038281 1.34e-04 10_[+4(1.72e-05)]_2 chr4:5958039-5958059 6.88e-01 20 chr2:26942330-26942350 3.49e-06 11_[+3(3.53e-05)]_1 chr16:81710793-81710813 5.24e-03 20 chr10:1026663-1026683 7.45e-01 20 chr17:72322232-72322252 3.83e-01 20 chr14:105106272-10510629 4.46e-01 20 chr4:7257006-7257026 2.47e-04 8_[+1(4.77e-05)]_4 chr20:47438932-47438952 3.60e-01 20 chr10:71603863-71603883 2.47e-01 20 chr11:57088325-57088345 6.96e-07 8_[+3(1.50e-05)]_4 chr10:105335984-10533600 5.25e-04 20 chr22:27054350-27054370 1.02e-01 20 chr14:75902325-75902345 1.18e-01 20 chr20:10303462-10303482 2.65e-04 11_[+2(9.15e-05)]_1 chr12:58039837-58039857 2.13e-02 20 chr4:8145283-8145303 2.66e-01 20 chr1:12248418-12248438 5.64e-02 20 chr16:57596787-57596807 9.30e-01 20 chr17:3816317-3816337 8.81e-03 10_[+1(7.42e-05)]_2 chr7:99958029-99958049 6.69e-01 20 chr14:61797426-61797446 7.24e-01 20 chr14:100470916-10047093 2.64e-02 3_[+5(1.11e-05)]_9 chr19:19266813-19266833 7.25e-02 10_[+2(9.15e-05)]_2 chr3:122664269-122664289 4.98e-02 20 chr22:43667134-43667154 2.13e-08 4_[+1(9.38e-05)]_[+3(3.53e-05)] chr7:73433663-73433683 7.67e-09 3_[+4(1.72e-05)]_1_[+1(2.74e-05)] chr7:73735028-73735048 6.55e-01 20 chr22:47152193-47152213 1.93e-01 20 chr11:64036709-64036729 1.40e-01 20 chr16:2040713-2040733 4.70e-01 20 chr3:50592227-50592247 8.48e-05 2_[+4(7.60e-05)]_10 chr1:67715944-67715964 1.45e-02 2_[+5(1.93e-05)]_10 chr19:46139705-46139725 4.01e-02 11_[+1(7.42e-05)]_1 chr10:121066695-12106671 5.15e-02 20 chr2:95832004-95832024 2.32e-01 20 chr22:25809856-25809876 2.71e-02 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n09.farnam.hpc.yale.internal ********************************************************************************