******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/ZEB1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr6:36355301-36355321 1.0000 20 chr19:9969632-9969652 1.0000 20 chr5:140858050-140858070 1.0000 20 chr2:8641092-8641112 1.0000 20 chr16:28936100-28936120 1.0000 20 chr16:50315247-50315267 1.0000 20 chr22:45127135-45127155 1.0000 20 chr11:694352-694372 1.0000 20 chr1:233760207-233760227 1.0000 20 chr12:133006569-13300658 1.0000 20 chr5:77591672-77591692 1.0000 20 chr19:19661064-19661084 1.0000 20 chr12:48137990-48138010 1.0000 20 chr1:27286871-27286891 1.0000 20 chr19:10654241-10654261 1.0000 20 chr13:21278393-21278413 1.0000 20 chr19:54676873-54676893 1.0000 20 chr5:159545610-159545630 1.0000 20 chr17:29814844-29814864 1.0000 20 chr1:180471208-180471228 1.0000 20 chr13:113369789-11336980 1.0000 20 chr9:93564178-93564198 1.0000 20 chr18:71958731-71958751 1.0000 20 chr16:67280773-67280793 1.0000 20 chr19:11321224-11321244 1.0000 20 chr1:1059134-1059154 1.0000 20 chr19:11320647-11320667 1.0000 20 chr1:181411499-181411519 1.0000 20 chr5:167718660-167718680 1.0000 20 chr16:89209022-89209042 1.0000 20 chr16:81917060-81917080 1.0000 20 chr22:38732095-38732115 1.0000 20 chr17:79869589-79869609 1.0000 20 chr17:80399312-80399332 1.0000 20 chr9:91003105-91003125 1.0000 20 chr19:6714010-6714030 1.0000 20 chr1:236332496-236332516 1.0000 20 chr1:62208179-62208199 1.0000 20 chr17:73521513-73521533 1.0000 20 chr21:38639378-38639398 1.0000 20 chr10:1613908-1613928 1.0000 20 chr14:105781633-10578165 1.0000 20 chr20:48506695-48506715 1.0000 20 chr17:8869170-8869190 1.0000 20 chr2:62532316-62532336 1.0000 20 chr10:1614385-1614405 1.0000 20 chr4:616691-616711 1.0000 20 chr20:58838167-58838187 1.0000 20 chr12:133137711-13313773 1.0000 20 chr1:22587540-22587560 1.0000 20 chrX:153602099-153602119 1.0000 20 chr12:6419937-6419957 1.0000 20 chr11:615510-615530 1.0000 20 chr19:7948232-7948252 1.0000 20 chr8:145277752-145277772 1.0000 20 chr19:42430601-42430621 1.0000 20 chr15:52587715-52587735 1.0000 20 chr8:27183138-27183158 1.0000 20 chr2:264092-264112 1.0000 20 chr13:114320286-11432030 1.0000 20 chr10:82231532-82231552 1.0000 20 chr11:78128473-78128493 1.0000 20 chr20:8286208-8286228 1.0000 20 chr1:209979444-209979464 1.0000 20 chr19:38755111-38755131 1.0000 20 chr3:11761227-11761247 1.0000 20 chr15:41222876-41222896 1.0000 20 chr7:55626249-55626269 1.0000 20 chr8:27184379-27184399 1.0000 20 chr16:74808863-74808883 1.0000 20 chr17:4785372-4785392 1.0000 20 chr17:3658278-3658298 1.0000 20 chr2:166650828-166650848 1.0000 20 chr11:59523020-59523040 1.0000 20 chr12:125256221-12525624 1.0000 20 chr1:29102027-29102047 1.0000 20 chr12:32552874-32552894 1.0000 20 chr8:145693191-145693211 1.0000 20 chr1:28286819-28286839 1.0000 20 chr3:11278471-11278491 1.0000 20 chr16:86371912-86371932 1.0000 20 chr19:18794891-18794911 1.0000 20 chr19:12996127-12996147 1.0000 20 chr14:31889362-31889382 1.0000 20 chr20:62447353-62447373 1.0000 20 chr18:74844821-74844841 1.0000 20 chr1:32210265-32210285 1.0000 20 chr16:30407196-30407216 1.0000 20 chr6:16129974-16129994 1.0000 20 chr17:8702759-8702779 1.0000 20 chr17:76384343-76384363 1.0000 20 chr9:116111833-116111853 1.0000 20 chr16:30107231-30107251 1.0000 20 chr18:13613799-13613819 1.0000 20 chr13:114211438-11421145 1.0000 20 chr15:93198428-93198448 1.0000 20 chr13:114320772-11432079 1.0000 20 chr6:136871702-136871722 1.0000 20 chr8:1806323-1806343 1.0000 20 chr9:100565865-100565885 1.0000 20 chr5:180617138-180617158 1.0000 20 chr19:18366178-18366198 1.0000 20 chr2:85804619-85804639 1.0000 20 chr3:141943882-141943902 1.0000 20 chr20:51833751-51833771 1.0000 20 chr6:24403012-24403032 1.0000 20 chr10:31393452-31393472 1.0000 20 chr15:41136416-41136436 1.0000 20 chr19:44007928-44007948 1.0000 20 chr16:28989288-28989308 1.0000 20 chr16:84682465-84682485 1.0000 20 chr21:43252856-43252876 1.0000 20 chr4:142557494-142557514 1.0000 20 chr16:9144536-9144556 1.0000 20 chr2:149895127-149895147 1.0000 20 chr6:106808475-106808495 1.0000 20 chr16:89752523-89752543 1.0000 20 chr14:54396771-54396791 1.0000 20 chr17:19411873-19411893 1.0000 20 chr16:87495162-87495182 1.0000 20 chr12:123718145-12371816 1.0000 20 chr13:114916012-11491603 1.0000 20 chr4:151936237-151936257 1.0000 20 chr7:100183299-100183319 1.0000 20 chr2:223289131-223289151 1.0000 20 chr7:98050498-98050518 1.0000 20 chr11:64612202-64612222 1.0000 20 chr19:14017459-14017479 1.0000 20 chr9:138455216-138455236 1.0000 20 chr11:763367-763387 1.0000 20 chr1:3566296-3566316 1.0000 20 chr1:179199168-179199188 1.0000 20 chr1:156720240-156720260 1.0000 20 chr14:75980938-75980958 1.0000 20 chr4:144480212-144480232 1.0000 20 chr12:123450804-12345082 1.0000 20 chr14:51134527-51134547 1.0000 20 chr5:95998292-95998312 1.0000 20 chr11:1280407-1280427 1.0000 20 chr17:34890341-34890361 1.0000 20 chr1:40367840-40367860 1.0000 20 chr5:1545813-1545833 1.0000 20 chr9:95478965-95478985 1.0000 20 chr16:75033931-75033951 1.0000 20 chr10:112116164-11211618 1.0000 20 chr3:183146182-183146202 1.0000 20 chr11:46269291-46269311 1.0000 20 chr7:48129064-48129084 1.0000 20 chr8:145806089-145806109 1.0000 20 chr16:1763969-1763989 1.0000 20 chr19:42429595-42429615 1.0000 20 chr9:139686302-139686322 1.0000 20 chr12:49363300-49363320 1.0000 20 chr6:52258937-52258957 1.0000 20 chr20:42571769-42571789 1.0000 20 chr11:130029583-13002960 1.0000 20 chr1:234613951-234613971 1.0000 20 chr1:18002484-18002504 1.0000 20 chr4:170540840-170540860 1.0000 20 chr11:64007972-64007992 1.0000 20 chr20:62469529-62469549 1.0000 20 chr2:96804465-96804485 1.0000 20 chr5:32173779-32173799 1.0000 20 chr10:98808579-98808599 1.0000 20 chr12:122110461-12211048 1.0000 20 chr5:316752-316772 1.0000 20 chr4:185232735-185232755 1.0000 20 chr12:53448127-53448147 1.0000 20 chr21:44835324-44835344 1.0000 20 chr2:231467556-231467576 1.0000 20 chr1:165600559-165600579 1.0000 20 chr6:166795511-166795531 1.0000 20 chr22:50311647-50311667 1.0000 20 chr3:129612749-129612769 1.0000 20 chr8:10817723-10817743 1.0000 20 chr1:6483649-6483669 1.0000 20 chr2:219523514-219523534 1.0000 20 chr19:920028-920048 1.0000 20 chr17:8013675-8013695 1.0000 20 chr22:24093123-24093143 1.0000 20 chr1:151566808-151566828 1.0000 20 chr20:51041041-51041061 1.0000 20 chr19:4084213-4084233 1.0000 20 chr21:43298661-43298681 1.0000 20 chr1:1059385-1059405 1.0000 20 chr6:167806432-167806452 1.0000 20 chr3:52931778-52931798 1.0000 20 chr10:3088860-3088880 1.0000 20 chr17:3876051-3876071 1.0000 20 chr17:39942288-39942308 1.0000 20 chr14:105647753-10564777 1.0000 20 chr5:158758484-158758504 1.0000 20 chr8:90770414-90770434 1.0000 20 chr5:138088726-138088746 1.0000 20 chr16:90098473-90098493 1.0000 20 chr12:97379447-97379467 1.0000 20 chr5:180288531-180288551 1.0000 20 chr6:34856923-34856943 1.0000 20 chr20:50777497-50777517 1.0000 20 chr1:27995736-27995756 1.0000 20 chr11:32851433-32851453 1.0000 20 chr6:30851107-30851127 1.0000 20 chr11:65548585-65548605 1.0000 20 chr19:38210767-38210787 1.0000 20 chr7:65878877-65878897 1.0000 20 chr20:5627499-5627519 1.0000 20 chr5:124747872-124747892 1.0000 20 chr16:88604338-88604358 1.0000 20 chr14:24836410-24836430 1.0000 20 chr1:1208074-1208094 1.0000 20 chr22:36806177-36806197 1.0000 20 chr12:100967804-10096782 1.0000 20 chr21:38338865-38338885 1.0000 20 chr2:73144667-73144687 1.0000 20 chr8:141467543-141467563 1.0000 20 chr8:145692475-145692495 1.0000 20 chr2:220118853-220118873 1.0000 20 chr12:51158056-51158076 1.0000 20 chr19:59050054-59050074 1.0000 20 chr14:94437264-94437284 1.0000 20 chr11:2952062-2952082 1.0000 20 chr4:128887002-128887022 1.0000 20 chr6:36333025-36333045 1.0000 20 chr7:44788650-44788670 1.0000 20 chr10:3215494-3215514 1.0000 20 chr14:23288869-23288889 1.0000 20 chr9:108007421-108007441 1.0000 20 chr4:83352316-83352336 1.0000 20 chr11:66246582-66246602 1.0000 20 chr11:69313595-69313615 1.0000 20 chr4:110651124-110651144 1.0000 20 chr15:75135157-75135177 1.0000 20 chr11:22851116-22851136 1.0000 20 chr12:124198539-12419855 1.0000 20 chrX:1588322-1588342 1.0000 20 chr3:44100138-44100158 1.0000 20 chr2:230931829-230931849 1.0000 20 chr19:47217937-47217957 1.0000 20 chr4:120133830-120133850 1.0000 20 chr13:27752225-27752245 1.0000 20 chr9:101017835-101017855 1.0000 20 chr15:101548847-10154886 1.0000 20 chr11:67771118-67771138 1.0000 20 chr2:265232-265252 1.0000 20 chr22:38003244-38003264 1.0000 20 chr17:1958230-1958250 1.0000 20 chr3:121740944-121740964 1.0000 20 chr12:116355148-11635516 1.0000 20 chr2:264712-264732 1.0000 20 chr15:94774831-94774851 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_ZEB1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/ZEB1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.165 C 0.333 G 0.332 T 0.17 Background letter frequencies (from file dataset with add-one prior applied): A 0.165 C 0.333 G 0.332 T 0.17 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CASSTGNS MEME-1 width = 8 sites = 128 llr = 702 E-value = 1.1e-065 ******************************************************************************** -------------------------------------------------------------------------------- Motif CASSTGNS MEME-1 Description -------------------------------------------------------------------------------- Simplified A :a:::122 pos.-specific C 9:45:133 probability G ::65:825 matrix T 1:::a:3: bits 2.6 * 2.3 * * 2.1 * * 1.8 * * Relative 1.6 * * Entropy 1.3 * * (7.9 bits) 1.0 * ** 0.8 ** ** 0.5 ****** 0.3 ****** * 0.0 -------- Multilevel CAGGTGCG consensus CC TC sequence A G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASSTGNS MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr15:94774831-94774851 6 3.80e-05 CGGTG CAGGTGAG GGGCGCG chr22:38003244-38003264 13 3.80e-05 GCAATGGACC CAGGTGAG chr6:30851107-30851127 2 3.80e-05 G CAGGTGTG GGGGTGTGGA chr20:50777497-50777517 9 3.80e-05 ggtgaggg caggtgag tgag chr3:52931778-52931798 3 3.80e-05 GC CAGGTGAG CCGGCCACCG chr20:62469529-62469549 9 3.80e-05 caggtgac caggtgag cgtc chr1:18002484-18002504 4 3.80e-05 gtg caggtgtg ggtgcaggt chr11:130029583-13002960 3 3.80e-05 gg caggtgag ccgggcaggt chr12:49363300-49363320 11 3.80e-05 TTCACCTGCT CAGGTGAG CA chr16:9144536-9144556 8 3.80e-05 GCAGCTG CAGGTGAG CTCAG chr8:1806323-1806343 4 3.80e-05 ccc caggtgag tccccaggt chr13:114320772-11432079 3 3.80e-05 cc caggtgtg tcccagctgt chr15:41222876-41222896 2 3.80e-05 C CAGGTGAG TAGCTCGCTC chr10:82231532-82231552 8 3.80e-05 TGAGTGG CAGGTGTG GGTGA chr15:52587715-52587735 5 3.80e-05 GTGG CAGGTGTG GCCCGGGC chr8:145277752-145277772 4 3.80e-05 GTA CAGGTGTG GGTACAGGT chr1:22587540-22587560 2 3.80e-05 g caggtgtg cggcgggtgt chr20:48506695-48506715 9 3.80e-05 CTGTCGGC CAGGTGAG GTCA chr19:54676873-54676893 8 3.80e-05 CCAGGGG CAGGTGTG TACCT chr11:694352-694372 1 3.80e-05 . CAGGTGTG CGGGGCAGGT chr2:264712-264732 8 9.50e-05 GCCCCTG CAGGTGAA CGGCG chr14:31889362-31889382 6 9.50e-05 GTGCA CAGGTGAA GCCAGAC chr17:80399312-80399332 2 9.50e-05 g caggtgaa caggcaggtg chr1:181411499-181411519 11 9.50e-05 GTGAAGGGCA CAGGTGTA AG chr4:185232735-185232755 10 1.90e-04 TGCAGTGTG CACCTGTG CGT chr19:12996127-12996147 1 1.90e-04 . CACCTGTG TGCGTGCGCA chr20:8286208-8286228 4 1.90e-04 AAC CACCTGTG GTAAAGGCA chr12:48137990-48138010 4 1.90e-04 ATT CACCTGAG CTCAGGTAA chr19:19661064-19661084 8 1.90e-04 ctgtgca cacctgtg cgcac chr15:75135157-75135177 6 2.47e-04 GGGTG CAGGTGCG CTCTTTA chr7:44788650-44788670 10 2.47e-04 gggggcagg caggtgcg gca chr17:8702759-8702779 2 2.47e-04 G CAGGTGCG CTAGGGGCGC chr14:24836410-24836430 8 3.42e-04 TCCAGCC CAGGTGAC AGGTG chr11:32851433-32851453 8 3.42e-04 GCGCGGC CAGGTGTC CCCAG chr2:8641092-8641112 3 3.42e-04 TG CAGGTGAC GCACACCTGA chr8:10817723-10817743 10 4.37e-04 caggtatag caggtggg tac chr9:138455216-138455236 1 4.37e-04 . caggtggg taggtgggta chr20:62447353-62447373 9 4.37e-04 ggtgggca caggtgca gtgg chr13:114320286-11432030 4 4.37e-04 ccc caggtgca tcccaggtg chr4:616691-616711 11 4.37e-04 AGGTGTGTCT CAGGTGCA TG chr1:236332496-236332516 3 4.37e-04 tg caggtgca ggtgcaggta chr19:10654241-10654261 12 4.37e-04 GCAGCCCGCG CAGGTGCA C chr11:69313595-69313615 1 6.26e-04 . CAGGTGGA GGGGTGCAGG chr6:167806432-167806452 11 6.26e-04 tgtgcctcct cacctgcg cc chr2:219523514-219523534 8 6.26e-04 GAACCTT CACCTGCG GGAGG chr12:122110461-12211048 11 6.26e-04 GCGCCCGGCT CACCTGCG CT chr17:34890341-34890361 10 6.26e-04 CCTGCCGGC CAGGTGGA AAG chr16:30107231-30107251 5 6.26e-04 CTCT CACCTGCG GGCGCCAA chr16:1763969-1763989 9 7.40e-04 ccttgccc cacctgtc ccca chr11:46269291-46269311 6 7.40e-04 CACAT CACCTGTC CCCATGG chr1:3566296-3566316 10 7.40e-04 TGGGTCCCG CACCTGTC TGG chr20:51833751-51833771 5 7.40e-04 GCCC CACCTGTC TGCGCTTG chr1:233760207-233760227 6 7.40e-04 ggcct cacctgtc ttcacct chr3:44100138-44100158 7 8.35e-04 TCCCAC CACCTGCA GAGCTC chr5:1545813-1545833 10 8.35e-04 acacaccca cacctgca ctc chr11:64612202-64612222 5 8.35e-04 ccct cacctggg cgccgcgc chr13:114916012-11491603 12 8.35e-04 acggtcaccT CACCTGGG G chr11:59523020-59523040 1 8.35e-04 . CACCTGGG ACGCGCTCAC chr16:89209022-89209042 2 8.35e-04 a cacctgca gacacctaca chr1:1059134-1059154 13 8.35e-04 acaccacaca cacctgca chr5:159545610-159545630 7 8.35e-04 GGCGCC CACCTGGG GCCGGG chr12:133006569-13300658 7 8.35e-04 tgcaca cacctggg aacctc chr8:90770414-90770434 1 9.48e-04 . CAGGTGGC CGTGAAGCAC chr3:183146182-183146202 1 9.48e-04 . CAGGTGGC CGTGGCTTCT chr21:43252856-43252876 8 9.48e-04 TCCTGGG CAGGTGGC TCCAC chr10:31393452-31393472 13 1.04e-03 AGGTAGGTTG CAGGTAAG chr20:58838167-58838187 8 1.04e-03 AGGTGGG CAGGTAAG CCTGC chr1:1208074-1208094 7 1.10e-03 CTGGCT CACCTGCC TGTCAC chr5:138088726-138088746 12 1.10e-03 AGCGGTGACT CACCTGCC C chr9:139686302-139686322 11 1.10e-03 GGCGCCAAGT CACCTGCC CG chr11:1280407-1280427 4 1.10e-03 AGG CACCTGCC CCCAGGTGA chr2:62532316-62532336 6 1.10e-03 CCTGC CACCTGCC TTACCTG chr2:85804619-85804639 7 1.17e-03 CTGAGT TAGGTGTG GCTGGA chr13:114211438-11421145 13 1.17e-03 cagatgtgtg taggtgtg chr14:75980938-75980958 11 1.27e-03 TCCCCTTCAT CACCTGGC CA chr1:156720240-156720260 6 1.27e-03 CCTCC CACCTGGC CAGGTGC chr8:27183138-27183158 13 1.27e-03 CGTCCCGGCT CACCTGGC chr21:38639378-38639398 6 1.27e-03 GGACG CACCTGGC GGGAACG chr16:81917060-81917080 6 1.27e-03 GTGCT CACCTGGC CACCTGT chr19:9969632-9969652 10 1.27e-03 GTAGACCCT CACCTGGC TAA chr20:5627499-5627519 8 1.32e-03 gggggat cacctaag cccag chr19:59050054-59050074 11 1.46e-03 TAGCCACCTT TACCTGTG CG chr19:4084213-4084233 1 1.46e-03 . CAGGTAAC TCCTGCGCCA chr2:166650828-166650848 4 1.46e-03 CCC TACCTGAG CGCTCCAGG chr19:42430601-42430621 12 1.46e-03 AAAGGTTAGT TACCTGAG G chr4:110651124-110651144 4 1.56e-03 CTT TACGTGAA CCGCCTCGG chr14:54396771-54396791 3 1.56e-03 AG CACCTGAT TGGGGTCACC chr10:3215494-3215514 10 1.69e-03 AGGGGATTG CAAGTGAG CTG chr19:14017459-14017479 7 1.69e-03 ACCACC CAAGTGTG GCCTAC chr11:67771118-67771138 10 1.83e-03 GCACCTACC CAGGTAGA CGC chr4:142557494-142557514 1 1.83e-03 . CAGGTAGA GGAGGAGACC chr3:11278471-11278491 4 2.02e-03 CAG CAGGTGGT GCTAAAGAG chr8:27184379-27184399 6 2.02e-03 ggtgc aaggtgtg gggacaa chr3:121740944-121740964 4 2.24e-03 TTT CAGCTCAG GGGCTTCGG chr19:7948232-7948252 2 2.24e-03 G CAGGTACC ATACCACCCT chr21:44835324-44835344 9 2.37e-03 ACGGAGTC CACCTGCT AAAG chr2:96804465-96804485 4 2.37e-03 AAC CAGGTCTA CTGGCAGCC chr15:101548847-10154886 6 2.62e-03 GGGAA CAGGTAGC TCTTCTG chr12:100967804-10096782 6 2.62e-03 CCACC CAAGTGCG GAGAGAG chr10:1614385-1614405 6 2.62e-03 gtgtg ctggtgag tgtgcag chr10:1613908-1613928 6 2.62e-03 gtgtg ctggtgag tgtgcag chr5:167718660-167718680 9 2.62e-03 AGCGCGGT TACCTGCA CCGC chr6:36355301-36355321 9 2.62e-03 CAGGCTCT TACCTGCA TTAC chr4:170540840-170540860 8 2.86e-03 CATGCTA CTGCTGTG GCCAC chr16:87495162-87495182 10 3.06e-03 TTCATCTCA TACCTGGA CGG chr22:38732095-38732115 5 3.06e-03 CCAG CACCTACC CCCAGCTG chr5:158758484-158758504 12 3.42e-03 TACACGCAGA CAGATGCG G chr22:24093123-24093143 13 3.42e-03 CAGGCGGACT CAGGTCAC chr1:234613951-234613971 5 3.42e-03 CCCC CAGCTCCG CCGACACC chr22:45127135-45127155 7 3.42e-03 CTGATG CAGGTCTC ACCTGT chr4:128887002-128887022 8 3.75e-03 TGGCTTC CAGCTCTC TTCTC chr1:209979444-209979464 7 3.75e-03 AGCCCT TACCTGCC CAGCCC chr5:140858050-140858070 3 3.75e-03 CG GAGCTGTG ATCCGGTGTT chr12:124198539-12419855 9 4.43e-03 CACTTCTG CAGTTGTA CCCA chr2:223289131-223289151 2 4.43e-03 C AAGGTGGA GGCAGACACC chr17:29814844-29814864 4 4.43e-03 CTC CACCTCCG GAggcgggg chr13:21278393-21278413 6 4.43e-03 CCACC AACCTGCG CAGCGTG chr6:52258937-52258957 2 4.83e-03 G CAGATGGA GGAGTTGGCC chr5:180617138-180617158 11 4.83e-03 GACCTCCCGG CACCTCAC CC chrX:153602099-153602119 11 4.83e-03 GGTGAGAAGA GACCTGTG CT chr1:1059385-1059405 12 5.59e-03 cctgtgcaca ctcctgcg c chr5:316752-316772 9 5.59e-03 GGTACCCT CAGGTACT CTGC chr5:77591672-77591692 1 5.59e-03 . CAGGTACT GAAACTGTCA chr10:112116164-11211618 13 6.74e-03 GCACTGTCCG GACCTGCG chr8:145692475-145692495 7 7.52e-03 CCGGCG GACCTGGG CCAGGT chr8:145806089-145806109 9 7.52e-03 ctactcct aacctggc cccg chr1:180471208-180471228 9 7.52e-03 GCTGCTCC CTGCTGGC CACC chr19:920028-920048 6 7.78e-03 TGCGC CTGCTATG CGGCCAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASSTGNS MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:94774831-94774851 3.8e-05 5_[+1]_7 chr22:38003244-38003264 3.8e-05 12_[+1] chr6:30851107-30851127 3.8e-05 1_[+1]_11 chr20:50777497-50777517 3.8e-05 8_[+1]_4 chr3:52931778-52931798 3.8e-05 2_[+1]_10 chr20:62469529-62469549 3.8e-05 8_[+1]_4 chr1:18002484-18002504 3.8e-05 3_[+1]_9 chr11:130029583-13002960 3.8e-05 2_[+1]_10 chr12:49363300-49363320 3.8e-05 10_[+1]_2 chr16:9144536-9144556 3.8e-05 7_[+1]_5 chr8:1806323-1806343 3.8e-05 3_[+1]_9 chr13:114320772-11432079 3.8e-05 2_[+1]_10 chr15:41222876-41222896 3.8e-05 1_[+1]_11 chr10:82231532-82231552 3.8e-05 7_[+1]_5 chr15:52587715-52587735 3.8e-05 4_[+1]_8 chr8:145277752-145277772 3.8e-05 3_[+1]_9 chr1:22587540-22587560 3.8e-05 1_[+1]_11 chr20:48506695-48506715 3.8e-05 8_[+1]_4 chr19:54676873-54676893 3.8e-05 7_[+1]_5 chr11:694352-694372 3.8e-05 [+1]_12 chr2:264712-264732 9.5e-05 7_[+1]_5 chr14:31889362-31889382 9.5e-05 5_[+1]_7 chr17:80399312-80399332 9.5e-05 1_[+1]_11 chr1:181411499-181411519 9.5e-05 10_[+1]_2 chr4:185232735-185232755 0.00019 9_[+1]_3 chr19:12996127-12996147 0.00019 [+1]_12 chr20:8286208-8286228 0.00019 3_[+1]_9 chr12:48137990-48138010 0.00019 3_[+1]_9 chr19:19661064-19661084 0.00019 7_[+1]_5 chr15:75135157-75135177 0.00025 5_[+1]_7 chr7:44788650-44788670 0.00025 9_[+1]_3 chr17:8702759-8702779 0.00025 1_[+1]_11 chr14:24836410-24836430 0.00034 7_[+1]_5 chr11:32851433-32851453 0.00034 7_[+1]_5 chr2:8641092-8641112 0.00034 2_[+1]_10 chr8:10817723-10817743 0.00044 9_[+1]_3 chr9:138455216-138455236 0.00044 [+1]_12 chr20:62447353-62447373 0.00044 8_[+1]_4 chr13:114320286-11432030 0.00044 3_[+1]_9 chr4:616691-616711 0.00044 10_[+1]_2 chr1:236332496-236332516 0.00044 2_[+1]_10 chr19:10654241-10654261 0.00044 11_[+1]_1 chr11:69313595-69313615 0.00063 [+1]_12 chr6:167806432-167806452 0.00063 10_[+1]_2 chr2:219523514-219523534 0.00063 7_[+1]_5 chr12:122110461-12211048 0.00063 10_[+1]_2 chr17:34890341-34890361 0.00063 9_[+1]_3 chr16:30107231-30107251 0.00063 4_[+1]_8 chr16:1763969-1763989 0.00074 8_[+1]_4 chr11:46269291-46269311 0.00074 5_[+1]_7 chr1:3566296-3566316 0.00074 9_[+1]_3 chr20:51833751-51833771 0.00074 4_[+1]_8 chr1:233760207-233760227 0.00074 5_[+1]_7 chr3:44100138-44100158 0.00083 6_[+1]_6 chr5:1545813-1545833 0.00083 9_[+1]_3 chr11:64612202-64612222 0.00083 4_[+1]_8 chr13:114916012-11491603 0.00083 11_[+1]_1 chr11:59523020-59523040 0.00083 [+1]_12 chr16:89209022-89209042 0.00083 1_[+1]_11 chr1:1059134-1059154 0.00083 12_[+1] chr5:159545610-159545630 0.00083 6_[+1]_6 chr12:133006569-13300658 0.00083 6_[+1]_6 chr8:90770414-90770434 0.00095 [+1]_12 chr3:183146182-183146202 0.00095 [+1]_12 chr21:43252856-43252876 0.00095 7_[+1]_5 chr10:31393452-31393472 0.001 12_[+1] chr20:58838167-58838187 0.001 7_[+1]_5 chr1:1208074-1208094 0.0011 6_[+1]_6 chr5:138088726-138088746 0.0011 11_[+1]_1 chr9:139686302-139686322 0.0011 10_[+1]_2 chr11:1280407-1280427 0.0011 3_[+1]_9 chr2:62532316-62532336 0.0011 5_[+1]_7 chr2:85804619-85804639 0.0012 6_[+1]_6 chr13:114211438-11421145 0.0012 12_[+1] chr14:75980938-75980958 0.0013 10_[+1]_2 chr1:156720240-156720260 0.0013 5_[+1]_7 chr8:27183138-27183158 0.0013 12_[+1] chr21:38639378-38639398 0.0013 5_[+1]_7 chr16:81917060-81917080 0.0013 5_[+1]_7 chr19:9969632-9969652 0.0013 9_[+1]_3 chr20:5627499-5627519 0.0013 7_[+1]_5 chr19:59050054-59050074 0.0015 10_[+1]_2 chr19:4084213-4084233 0.0015 [+1]_12 chr2:166650828-166650848 0.0015 3_[+1]_9 chr19:42430601-42430621 0.0015 11_[+1]_1 chr4:110651124-110651144 0.0016 3_[+1]_9 chr14:54396771-54396791 0.0016 2_[+1]_10 chr10:3215494-3215514 0.0017 9_[+1]_3 chr19:14017459-14017479 0.0017 6_[+1]_6 chr11:67771118-67771138 0.0018 9_[+1]_3 chr4:142557494-142557514 0.0018 [+1]_12 chr3:11278471-11278491 0.002 3_[+1]_9 chr8:27184379-27184399 0.002 5_[+1]_7 chr3:121740944-121740964 0.0022 3_[+1]_9 chr19:7948232-7948252 0.0022 1_[+1]_11 chr21:44835324-44835344 0.0024 8_[+1]_4 chr2:96804465-96804485 0.0024 3_[+1]_9 chr15:101548847-10154886 0.0026 5_[+1]_7 chr12:100967804-10096782 0.0026 5_[+1]_7 chr10:1614385-1614405 0.0026 5_[+1]_7 chr10:1613908-1613928 0.0026 5_[+1]_7 chr5:167718660-167718680 0.0026 8_[+1]_4 chr6:36355301-36355321 0.0026 8_[+1]_4 chr4:170540840-170540860 0.0029 7_[+1]_5 chr16:87495162-87495182 0.0031 9_[+1]_3 chr22:38732095-38732115 0.0031 4_[+1]_8 chr5:158758484-158758504 0.0034 11_[+1]_1 chr22:24093123-24093143 0.0034 12_[+1] chr1:234613951-234613971 0.0034 4_[+1]_8 chr22:45127135-45127155 0.0034 6_[+1]_6 chr4:128887002-128887022 0.0037 7_[+1]_5 chr1:209979444-209979464 0.0037 6_[+1]_6 chr5:140858050-140858070 0.0037 2_[+1]_10 chr12:124198539-12419855 0.0044 8_[+1]_4 chr2:223289131-223289151 0.0044 1_[+1]_11 chr17:29814844-29814864 0.0044 3_[+1]_9 chr13:21278393-21278413 0.0044 5_[+1]_7 chr6:52258937-52258957 0.0048 1_[+1]_11 chr5:180617138-180617158 0.0048 10_[+1]_2 chrX:153602099-153602119 0.0048 10_[+1]_2 chr1:1059385-1059405 0.0056 11_[+1]_1 chr5:316752-316772 0.0056 8_[+1]_4 chr5:77591672-77591692 0.0056 [+1]_12 chr10:112116164-11211618 0.0067 12_[+1] chr8:145692475-145692495 0.0075 6_[+1]_6 chr8:145806089-145806109 0.0075 8_[+1]_4 chr1:180471208-180471228 0.0075 8_[+1]_4 chr19:920028-920048 0.0078 5_[+1]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASSTGNS MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CASSTGNS width=8 seqs=128 chr15:94774831-94774851 ( 6) CAGGTGAG 1 chr22:38003244-38003264 ( 13) CAGGTGAG 1 chr6:30851107-30851127 ( 2) CAGGTGTG 1 chr20:50777497-50777517 ( 9) CAGGTGAG 1 chr3:52931778-52931798 ( 3) CAGGTGAG 1 chr20:62469529-62469549 ( 9) CAGGTGAG 1 chr1:18002484-18002504 ( 4) CAGGTGTG 1 chr11:130029583-13002960 ( 3) CAGGTGAG 1 chr12:49363300-49363320 ( 11) CAGGTGAG 1 chr16:9144536-9144556 ( 8) CAGGTGAG 1 chr8:1806323-1806343 ( 4) CAGGTGAG 1 chr13:114320772-11432079 ( 3) CAGGTGTG 1 chr15:41222876-41222896 ( 2) CAGGTGAG 1 chr10:82231532-82231552 ( 8) CAGGTGTG 1 chr15:52587715-52587735 ( 5) CAGGTGTG 1 chr8:145277752-145277772 ( 4) CAGGTGTG 1 chr1:22587540-22587560 ( 2) CAGGTGTG 1 chr20:48506695-48506715 ( 9) CAGGTGAG 1 chr19:54676873-54676893 ( 8) CAGGTGTG 1 chr11:694352-694372 ( 1) CAGGTGTG 1 chr2:264712-264732 ( 8) CAGGTGAA 1 chr14:31889362-31889382 ( 6) CAGGTGAA 1 chr17:80399312-80399332 ( 2) CAGGTGAA 1 chr1:181411499-181411519 ( 11) CAGGTGTA 1 chr4:185232735-185232755 ( 10) CACCTGTG 1 chr19:12996127-12996147 ( 1) CACCTGTG 1 chr20:8286208-8286228 ( 4) CACCTGTG 1 chr12:48137990-48138010 ( 4) CACCTGAG 1 chr19:19661064-19661084 ( 8) CACCTGTG 1 chr15:75135157-75135177 ( 6) CAGGTGCG 1 chr7:44788650-44788670 ( 10) CAGGTGCG 1 chr17:8702759-8702779 ( 2) CAGGTGCG 1 chr14:24836410-24836430 ( 8) CAGGTGAC 1 chr11:32851433-32851453 ( 8) CAGGTGTC 1 chr2:8641092-8641112 ( 3) CAGGTGAC 1 chr8:10817723-10817743 ( 10) CAGGTGGG 1 chr9:138455216-138455236 ( 1) CAGGTGGG 1 chr20:62447353-62447373 ( 9) CAGGTGCA 1 chr13:114320286-11432030 ( 4) CAGGTGCA 1 chr4:616691-616711 ( 11) CAGGTGCA 1 chr1:236332496-236332516 ( 3) CAGGTGCA 1 chr19:10654241-10654261 ( 12) CAGGTGCA 1 chr11:69313595-69313615 ( 1) CAGGTGGA 1 chr6:167806432-167806452 ( 11) CACCTGCG 1 chr2:219523514-219523534 ( 8) CACCTGCG 1 chr12:122110461-12211048 ( 11) CACCTGCG 1 chr17:34890341-34890361 ( 10) CAGGTGGA 1 chr16:30107231-30107251 ( 5) CACCTGCG 1 chr16:1763969-1763989 ( 9) CACCTGTC 1 chr11:46269291-46269311 ( 6) CACCTGTC 1 chr1:3566296-3566316 ( 10) CACCTGTC 1 chr20:51833751-51833771 ( 5) CACCTGTC 1 chr1:233760207-233760227 ( 6) CACCTGTC 1 chr3:44100138-44100158 ( 7) CACCTGCA 1 chr5:1545813-1545833 ( 10) CACCTGCA 1 chr11:64612202-64612222 ( 5) CACCTGGG 1 chr13:114916012-11491603 ( 12) CACCTGGG 1 chr11:59523020-59523040 ( 1) CACCTGGG 1 chr16:89209022-89209042 ( 2) CACCTGCA 1 chr1:1059134-1059154 ( 13) CACCTGCA 1 chr5:159545610-159545630 ( 7) CACCTGGG 1 chr12:133006569-13300658 ( 7) CACCTGGG 1 chr8:90770414-90770434 ( 1) CAGGTGGC 1 chr3:183146182-183146202 ( 1) CAGGTGGC 1 chr21:43252856-43252876 ( 8) CAGGTGGC 1 chr10:31393452-31393472 ( 13) CAGGTAAG 1 chr20:58838167-58838187 ( 8) CAGGTAAG 1 chr1:1208074-1208094 ( 7) CACCTGCC 1 chr5:138088726-138088746 ( 12) CACCTGCC 1 chr9:139686302-139686322 ( 11) CACCTGCC 1 chr11:1280407-1280427 ( 4) CACCTGCC 1 chr2:62532316-62532336 ( 6) CACCTGCC 1 chr2:85804619-85804639 ( 7) TAGGTGTG 1 chr13:114211438-11421145 ( 13) TAGGTGTG 1 chr14:75980938-75980958 ( 11) CACCTGGC 1 chr1:156720240-156720260 ( 6) CACCTGGC 1 chr8:27183138-27183158 ( 13) CACCTGGC 1 chr21:38639378-38639398 ( 6) CACCTGGC 1 chr16:81917060-81917080 ( 6) CACCTGGC 1 chr19:9969632-9969652 ( 10) CACCTGGC 1 chr20:5627499-5627519 ( 8) CACCTAAG 1 chr19:59050054-59050074 ( 11) TACCTGTG 1 chr19:4084213-4084233 ( 1) CAGGTAAC 1 chr2:166650828-166650848 ( 4) TACCTGAG 1 chr19:42430601-42430621 ( 12) TACCTGAG 1 chr4:110651124-110651144 ( 4) TACGTGAA 1 chr14:54396771-54396791 ( 3) CACCTGAT 1 chr10:3215494-3215514 ( 10) CAAGTGAG 1 chr19:14017459-14017479 ( 7) CAAGTGTG 1 chr11:67771118-67771138 ( 10) CAGGTAGA 1 chr4:142557494-142557514 ( 1) CAGGTAGA 1 chr3:11278471-11278491 ( 4) CAGGTGGT 1 chr8:27184379-27184399 ( 6) AAGGTGTG 1 chr3:121740944-121740964 ( 4) CAGCTCAG 1 chr19:7948232-7948252 ( 2) CAGGTACC 1 chr21:44835324-44835344 ( 9) CACCTGCT 1 chr2:96804465-96804485 ( 4) CAGGTCTA 1 chr15:101548847-10154886 ( 6) CAGGTAGC 1 chr12:100967804-10096782 ( 6) CAAGTGCG 1 chr10:1614385-1614405 ( 6) CTGGTGAG 1 chr10:1613908-1613928 ( 6) CTGGTGAG 1 chr5:167718660-167718680 ( 9) TACCTGCA 1 chr6:36355301-36355321 ( 9) TACCTGCA 1 chr4:170540840-170540860 ( 8) CTGCTGTG 1 chr16:87495162-87495182 ( 10) TACCTGGA 1 chr22:38732095-38732115 ( 5) CACCTACC 1 chr5:158758484-158758504 ( 12) CAGATGCG 1 chr22:24093123-24093143 ( 13) CAGGTCAC 1 chr1:234613951-234613971 ( 5) CAGCTCCG 1 chr22:45127135-45127155 ( 7) CAGGTCTC 1 chr4:128887002-128887022 ( 8) CAGCTCTC 1 chr1:209979444-209979464 ( 7) TACCTGCC 1 chr5:140858050-140858070 ( 3) GAGCTGTG 1 chr12:124198539-12419855 ( 9) CAGTTGTA 1 chr2:223289131-223289151 ( 2) AAGGTGGA 1 chr17:29814844-29814864 ( 4) CACCTCCG 1 chr13:21278393-21278413 ( 6) AACCTGCG 1 chr6:52258937-52258957 ( 2) CAGATGGA 1 chr5:180617138-180617158 ( 11) CACCTCAC 1 chrX:153602099-153602119 ( 11) GACCTGTG 1 chr1:1059385-1059405 ( 12) CTCCTGCG 1 chr5:316752-316772 ( 9) CAGGTACT 1 chr5:77591672-77591692 ( 1) CAGGTACT 1 chr10:112116164-11211618 ( 13) GACCTGCG 1 chr8:145692475-145692495 ( 7) GACCTGGG 1 chr8:145806089-145806109 ( 9) AACCTGGC 1 chr1:180471208-180471228 ( 9) CTGCTGGC 1 chr19:920028-920048 ( 6) CTGCTATG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASSTGNS MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 4.60825 E= 1.1e-065 -240 137 -341 -112 253 -1364 -1364 -186 -282 34 74 -1364 -340 49 62 -444 -1364 -1364 -1364 255 -82 -241 135 -1364 55 -24 -60 60 24 -37 62 -212 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASSTGNS MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 128 E= 1.1e-065 0.031250 0.859375 0.031250 0.078125 0.953125 0.000000 0.000000 0.046875 0.023438 0.421875 0.554688 0.000000 0.015625 0.468750 0.507812 0.007812 0.000000 0.000000 0.000000 1.000000 0.093750 0.062500 0.843750 0.000000 0.242188 0.281250 0.218750 0.257812 0.195312 0.257812 0.507812 0.039062 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASSTGNS MEME-1 regular expression -------------------------------------------------------------------------------- CA[GC][GC]TG[CTAG][GC] -------------------------------------------------------------------------------- Time 2.16 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAAATCW MEME-2 width = 8 sites = 3 llr = 38 E-value = 1.6e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAAATCW MEME-2 Description -------------------------------------------------------------------------------- Simplified A aaaaa:37 pos.-specific C ::::::7: probability G :::::::: matrix T :::::a:3 bits 2.6 ****** 2.3 ****** 2.1 ****** 1.8 ****** Relative 1.6 ****** * Entropy 1.3 ****** * (18.2 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel AAAAATCA consensus AT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAATCW MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:47217937-47217957 6 1.71e-06 GGCAG AAAAATAA AACTGGG chr4:83352316-83352336 6 1.71e-06 ACGCT AAAAATCA CCGAAGG chr14:94437264-94437284 13 3.47e-06 ggtggcccct aaaAATCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAATCW MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:47217937-47217957 1.7e-06 5_[+2]_7 chr4:83352316-83352336 1.7e-06 5_[+2]_7 chr14:94437264-94437284 3.5e-06 12_[+2] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAATCW MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAAATCW width=8 seqs=3 chr19:47217937-47217957 ( 6) AAAAATAA 1 chr4:83352316-83352336 ( 6) AAAAATCA 1 chr14:94437264-94437284 ( 13) AAAAATCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAATCW MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.5277 E= 1.6e+001 259 -823 -823 -823 259 -823 -823 -823 259 -823 -823 -823 259 -823 -823 -823 259 -823 -823 -823 -823 -823 -823 255 101 100 -823 -823 201 -823 -823 97 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAATCW MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 1.6e+001 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.333333 0.666667 0.000000 0.000000 0.666667 0.000000 0.000000 0.333333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAATCW MEME-2 regular expression -------------------------------------------------------------------------------- AAAAAT[CA][AT] -------------------------------------------------------------------------------- Time 2.94 secs. ******************************************************************************** ******************************************************************************** MOTIF CTCACCTG MEME-3 width = 8 sites = 9 llr = 85 E-value = 2.3e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTCACCTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :2:a:::: pos.-specific C 9:9:9a:: probability G :::::::a matrix T 181:1:a: bits 2.6 * * 2.3 * * 2.1 * * 1.8 * * * Relative 1.6 * * *** Entropy 1.3 ******** (13.7 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CTCACCTG consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCACCTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:65878877-65878897 12 1.95e-05 ACGCACTCGC CTCACCTG A chr16:86371912-86371932 13 1.95e-05 GATGTCGTCA CTCACCTG chr19:11320647-11320667 13 1.95e-05 tgtccaccct ctcacctg chr19:11321224-11321244 13 1.95e-05 tgtccacccc ctcacctg chr6:166795511-166795531 12 3.84e-05 CCGCCTCTGG CACACCTG G chr2:8641092-8641112 12 3.84e-05 GCAGGTGACG CACACCTG A chr12:49363300-49363320 1 6.82e-05 . TTCACCTG CTCAGGTGAG chr16:89752523-89752543 12 6.82e-05 GGAGGACCCT CTTACCTG G chr1:32210265-32210285 9 6.82e-05 AGCCCAGG CTCATCTG CAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCACCTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:65878877-65878897 1.9e-05 11_[+3]_1 chr16:86371912-86371932 1.9e-05 12_[+3] chr19:11320647-11320667 1.9e-05 12_[+3] chr19:11321224-11321244 1.9e-05 12_[+3] chr6:166795511-166795531 3.8e-05 11_[+3]_1 chr2:8641092-8641112 3.8e-05 11_[+3]_1 chr12:49363300-49363320 6.8e-05 [+3]_12 chr16:89752523-89752543 6.8e-05 11_[+3]_1 chr1:32210265-32210285 6.8e-05 8_[+3]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCACCTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTCACCTG width=8 seqs=9 chr7:65878877-65878897 ( 12) CTCACCTG 1 chr16:86371912-86371932 ( 13) CTCACCTG 1 chr19:11320647-11320667 ( 13) CTCACCTG 1 chr19:11321224-11321244 ( 13) CTCACCTG 1 chr6:166795511-166795531 ( 12) CACACCTG 1 chr2:8641092-8641112 ( 12) CACACCTG 1 chr12:49363300-49363320 ( 1) TTCACCTG 1 chr16:89752523-89752543 ( 12) CTTACCTG 1 chr1:32210265-32210285 ( 9) CTCATCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCACCTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.34207 E= 2.3e+001 -982 141 -982 -61 43 -982 -982 219 -982 141 -982 -61 260 -982 -982 -982 -982 141 -982 -61 -982 158 -982 -982 -982 -982 -982 255 -982 -982 159 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCACCTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 2.3e+001 0.000000 0.888889 0.000000 0.111111 0.222222 0.000000 0.000000 0.777778 0.000000 0.888889 0.000000 0.111111 1.000000 0.000000 0.000000 0.000000 0.000000 0.888889 0.000000 0.111111 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCACCTG MEME-3 regular expression -------------------------------------------------------------------------------- C[TA]CACCTG -------------------------------------------------------------------------------- Time 5.83 secs. ******************************************************************************** ******************************************************************************** MOTIF TATMTCAT MEME-4 width = 8 sites = 2 llr = 25 E-value = 2.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TATMTCAT MEME-4 Description -------------------------------------------------------------------------------- Simplified A :a:5::a: pos.-specific C :::5:a:: probability G :::::::: matrix T a:a:a::a bits 2.6 *** * ** 2.3 *** * ** 2.1 *** * ** 1.8 *** * ** Relative 1.6 *** **** Entropy 1.3 *** **** (18.1 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TATATCAT consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATMTCAT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:18794891-18794911 10 1.25e-06 AGGGGCCTC TATATCAT TAC chr16:28989288-28989308 9 3.77e-06 ATCGGAAG TATCTCAT GTGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATMTCAT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:18794891-18794911 1.2e-06 9_[+4]_3 chr16:28989288-28989308 3.8e-06 8_[+4]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATMTCAT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TATMTCAT width=8 seqs=2 chr19:18794891-18794911 ( 10) TATATCAT 1 chr16:28989288-28989308 ( 9) TATCTCAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATMTCAT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.6653 E= 2.5e+003 -765 -765 -765 255 259 -765 -765 -765 -765 -765 -765 255 159 58 -765 -765 -765 -765 -765 255 -765 158 -765 -765 259 -765 -765 -765 -765 -765 -765 255 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATMTCAT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.5e+003 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.500000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATMTCAT MEME-4 regular expression -------------------------------------------------------------------------------- TAT[AC]TCAT -------------------------------------------------------------------------------- Time 8.59 secs. ******************************************************************************** ******************************************************************************** MOTIF KCTAAAGA MEME-5 width = 8 sites = 2 llr = 24 E-value = 3.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif KCTAAAGA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::aaa:a pos.-specific C :a:::::: probability G 5:::::a: matrix T 5:a::::: bits 2.6 **** * 2.3 **** * 2.1 **** * 1.8 **** * Relative 1.6 ******* Entropy 1.3 ******* (17.2 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCTAAAGA consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCTAAAGA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr17:3876051-3876071 3 2.37e-06 GT TCTAAAGA CCTGCTGCTG chr3:11278471-11278491 12 6.99e-06 AGCAGGTGGT GCTAAAGA G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCTAAAGA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:3876051-3876071 2.4e-06 2_[+5]_10 chr3:11278471-11278491 7e-06 11_[+5]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCTAAAGA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KCTAAAGA width=8 seqs=2 chr17:3876051-3876071 ( 3) TCTAAAGA 1 chr3:11278471-11278491 ( 12) GCTAAAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCTAAAGA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.6653 E= 3.6e+003 -765 -765 59 155 -765 158 -765 -765 -765 -765 -765 255 259 -765 -765 -765 259 -765 -765 -765 259 -765 -765 -765 -765 -765 159 -765 259 -765 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCTAAAGA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.6e+003 0.000000 0.000000 0.500000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCTAAAGA MEME-5 regular expression -------------------------------------------------------------------------------- [GT]CTAAAGA -------------------------------------------------------------------------------- Time 11.31 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:36355301-36355321 5.32e-03 6_[+3(6.82e-05)]_6 chr19:9969632-9969652 7.00e-04 7_[+3(1.95e-05)]_5 chr5:140858050-140858070 2.49e-01 20 chr2:8641092-8641112 7.45e-04 11_[+3(3.84e-05)]_1 chr16:28936100-28936120 8.55e-01 20 chr16:50315247-50315267 9.09e-01 20 chr22:45127135-45127155 1.42e-03 11_[+3(1.95e-05)]_1 chr11:694352-694372 9.27e-02 [+1(3.80e-05)]_12 chr1:233760207-233760227 8.47e-04 3_[+3(1.95e-05)]_9 chr12:133006569-13300658 8.76e-04 4_[+3(3.84e-05)]_8 chr5:77591672-77591692 6.31e-02 20 chr19:19661064-19661084 5.77e-04 5_[+3(3.84e-05)]_7 chr12:48137990-48138010 2.32e-04 1_[+3(6.82e-05)]_11 chr1:27286871-27286891 8.70e-01 20 chr19:10654241-10654261 1.94e-01 20 chr13:21278393-21278413 1.07e-01 20 chr19:54676873-54676893 7.41e-02 7_[+1(3.80e-05)]_5 chr5:159545610-159545630 3.02e-02 20 chr17:29814844-29814864 2.68e-01 20 chr1:180471208-180471228 5.60e-01 20 chr13:113369789-11336980 2.12e-01 20 chr9:93564178-93564198 9.60e-01 20 chr18:71958731-71958751 9.74e-01 20 chr16:67280773-67280793 3.47e-01 20 chr19:11321224-11321244 4.78e-02 12_[+3(1.95e-05)] chr1:1059134-1059154 5.59e-04 10_[+3(3.84e-05)]_2 chr19:11320647-11320667 1.38e-02 12_[+3(1.95e-05)] chr1:181411499-181411519 1.78e-02 10_[+1(9.50e-05)]_2 chr5:167718660-167718680 6.50e-02 20 chr16:89209022-89209042 1.37e-02 20 chr16:81917060-81917080 3.18e-03 3_[+3(1.95e-05)]_9 chr22:38732095-38732115 1.46e-01 20 chr17:79869589-79869609 6.51e-01 20 chr17:80399312-80399332 1.00e-02 1_[+1(9.50e-05)]_11 chr9:91003105-91003125 7.70e-01 20 chr19:6714010-6714030 5.50e-01 20 chr1:236332496-236332516 2.40e-01 20 chr1:62208179-62208199 9.93e-01 20 chr17:73521513-73521533 9.77e-01 20 chr21:38639378-38639398 3.03e-02 20 chr10:1613908-1613928 4.16e-01 20 chr14:105781633-10578165 9.84e-01 20 chr20:48506695-48506715 5.07e-02 8_[+1(3.80e-05)]_4 chr17:8869170-8869190 9.87e-01 20 chr2:62532316-62532336 7.36e-03 12_[+3(6.82e-05)] chr10:1614385-1614405 4.16e-01 20 chr4:616691-616711 2.01e-03 20 chr20:58838167-58838187 1.34e-01 20 chr12:133137711-13313773 5.15e-01 20 chr1:22587540-22587560 9.27e-02 1_[+1(3.80e-05)]_11 chrX:153602099-153602119 3.44e-02 20 chr12:6419937-6419957 1.00e+00 20 chr11:615510-615530 8.57e-01 20 chr19:7948232-7948252 8.78e-02 20 chr8:145277752-145277772 7.18e-03 3_[+1(3.80e-05)]_9 chr19:42430601-42430621 1.07e-03 20 chr15:52587715-52587735 8.67e-02 4_[+1(3.80e-05)]_8 chr8:27183138-27183158 3.24e-03 10_[+3(1.95e-05)]_2 chr2:264092-264112 6.26e-01 20 chr13:114320286-11432030 6.36e-02 20 chr10:82231532-82231552 8.67e-02 7_[+1(3.80e-05)]_5 chr11:78128473-78128493 5.01e-01 20 chr20:8286208-8286228 6.37e-04 20 chr1:209979444-209979464 1.45e-02 4_[+3(6.82e-05)]_8 chr19:38755111-38755131 8.07e-01 20 chr3:11761227-11761247 9.90e-01 20 chr15:41222876-41222896 2.12e-02 1_[+1(3.80e-05)]_11 chr7:55626249-55626269 1.59e-01 20 chr8:27184379-27184399 3.99e-01 20 chr16:74808863-74808883 9.95e-01 20 chr17:4785372-4785392 4.75e-01 20 chr17:3658278-3658298 9.86e-01 20 chr2:166650828-166650848 7.27e-03 20 chr11:59523020-59523040 3.34e-01 20 chr12:125256221-12525624 9.03e-01 20 chr1:29102027-29102047 9.70e-01 20 chr12:32552874-32552894 4.11e-01 20 chr8:145693191-145693211 1.00e+00 20 chr1:28286819-28286839 9.60e-01 20 chr3:11278471-11278491 1.39e-03 11_[+5(6.99e-06)]_1 chr16:86371912-86371932 3.86e-03 12_[+3(1.95e-05)] chr19:18794891-18794911 2.12e-04 9_[+4(1.25e-06)]_3 chr19:12996127-12996147 7.21e-02 20 chr14:31889362-31889382 4.87e-03 5_[+1(9.50e-05)]_7 chr20:62447353-62447373 7.66e-02 20 chr18:74844821-74844841 9.90e-01 20 chr1:32210265-32210285 1.39e-03 8_[+3(6.82e-05)]_4 chr16:30407196-30407216 9.89e-01 20 chr6:16129974-16129994 8.48e-01 20 chr17:8702759-8702779 1.60e-01 20 chr17:76384343-76384363 1.56e-01 20 chr9:116111833-116111853 9.07e-01 20 chr16:30107231-30107251 6.15e-04 2_[+3(1.95e-05)]_10 chr18:13613799-13613819 6.60e-01 20 chr13:114211438-11421145 1.11e-01 20 chr15:93198428-93198448 6.89e-01 20 chr13:114320772-11432079 5.30e-03 2_[+1(3.80e-05)]_10 chr6:136871702-136871722 9.99e-01 20 chr8:1806323-1806343 3.34e-02 3_[+1(3.80e-05)]_9 chr9:100565865-100565885 2.73e-01 20 chr5:180617138-180617158 2.26e-01 20 chr19:18366178-18366198 8.61e-02 20 chr2:85804619-85804639 3.07e-01 20 chr3:141943882-141943902 9.07e-01 20 chr20:51833751-51833771 1.44e-02 20 chr6:24403012-24403032 2.20e-01 20 chr10:31393452-31393472 3.02e-01 20 chr15:41136416-41136436 9.95e-01 20 chr19:44007928-44007948 7.32e-01 20 chr16:28989288-28989308 4.50e-06 8_[+4(3.77e-06)]_4 chr16:84682465-84682485 9.98e-01 20 chr21:43252856-43252876 4.03e-01 20 chr4:142557494-142557514 1.33e-01 20 chr16:9144536-9144556 7.22e-03 7_[+1(3.80e-05)]_5 chr2:149895127-149895147 8.99e-01 20 chr6:106808475-106808495 9.99e-01 20 chr16:89752523-89752543 2.50e-02 11_[+3(6.82e-05)]_1 chr14:54396771-54396791 3.54e-02 20 chr17:19411873-19411893 9.20e-01 20 chr16:87495162-87495182 1.21e-04 7_[+3(9.71e-05)]_5 chr12:123718145-12371816 1.00e+00 20 chr13:114916012-11491603 7.27e-04 9_[+3(1.95e-05)]_3 chr4:151936237-151936257 7.61e-02 20 chr7:100183299-100183319 1.83e-01 20 chr2:223289131-223289151 3.82e-01 20 chr7:98050498-98050518 5.27e-01 20 chr11:64612202-64612222 2.88e-03 2_[+3(1.95e-05)]_10 chr19:14017459-14017479 1.27e-01 20 chr9:138455216-138455236 3.37e-01 20 chr11:763367-763387 1.04e-01 20 chr1:3566296-3566316 1.68e-02 20 chr1:179199168-179199188 9.82e-01 20 chr1:156720240-156720260 2.94e-02 20 chr14:75980938-75980958 3.79e-03 20 chr4:144480212-144480232 3.59e-01 20 chr12:123450804-12345082 5.81e-01 20 chr14:51134527-51134547 9.85e-01 20 chr5:95998292-95998312 7.26e-01 20 chr11:1280407-1280427 1.08e-01 20 chr17:34890341-34890361 3.04e-01 20 chr1:40367840-40367860 9.54e-01 20 chr5:1545813-1545833 3.48e-03 7_[+3(3.84e-05)]_5 chr9:95478965-95478985 1.69e-01 20 chr16:75033931-75033951 9.24e-01 20 chr10:112116164-11211618 1.61e-01 20 chr3:183146182-183146202 4.21e-01 20 chr11:46269291-46269311 3.17e-03 20 chr7:48129064-48129084 6.31e-01 20 chr8:145806089-145806109 2.09e-02 20 chr16:1763969-1763989 2.01e-02 20 chr19:42429595-42429615 1.02e-01 20 chr9:139686302-139686322 2.46e-03 20 chr12:49363300-49363320 2.01e-04 [+3(6.82e-05)]_2_[+1(3.80e-05)]_2 chr6:52258937-52258957 7.03e-01 20 chr20:42571769-42571789 2.75e-01 20 chr11:130029583-13002960 6.58e-02 2_[+1(3.80e-05)]_10 chr1:234613951-234613971 3.99e-01 20 chr1:18002484-18002504 6.13e-02 3_[+1(3.80e-05)]_9 chr4:170540840-170540860 2.02e-01 20 chr11:64007972-64007992 2.81e-01 20 chr20:62469529-62469549 2.90e-02 8_[+1(3.80e-05)]_4 chr2:96804465-96804485 1.10e-01 20 chr5:32173779-32173799 9.76e-01 20 chr10:98808579-98808599 6.70e-01 20 chr12:122110461-12211048 1.94e-03 8_[+3(1.95e-05)]_4 chr5:316752-316772 3.07e-01 20 chr4:185232735-185232755 1.98e-02 20 chr12:53448127-53448147 9.68e-01 20 chr21:44835324-44835344 7.02e-02 20 chr2:231467556-231467576 6.26e-01 20 chr1:165600559-165600579 9.69e-01 20 chr6:166795511-166795531 3.74e-02 11_[+3(3.84e-05)]_1 chr22:50311647-50311667 9.69e-01 20 chr3:129612749-129612769 6.10e-01 20 chr8:10817723-10817743 2.59e-03 20 chr1:6483649-6483669 9.83e-01 20 chr2:219523514-219523534 1.15e-03 5_[+3(6.82e-05)]_7 chr19:920028-920048 4.74e-01 20 chr17:8013675-8013695 1.00e+00 20 chr22:24093123-24093143 2.00e-01 20 chr1:151566808-151566828 4.66e-01 20 chr20:51041041-51041061 4.01e-01 20 chr19:4084213-4084233 1.20e-02 20 chr21:43298661-43298681 9.99e-01 20 chr1:1059385-1059405 5.22e-02 20 chr6:167806432-167806452 8.91e-04 8_[+3(1.95e-05)]_4 chr3:52931778-52931798 7.62e-02 2_[+1(3.80e-05)]_10 chr10:3088860-3088880 9.39e-01 20 chr17:3876051-3876071 2.52e-05 2_[+5(2.37e-06)]_10 chr17:39942288-39942308 8.20e-02 20 chr14:105647753-10564777 9.70e-01 20 chr5:158758484-158758504 1.61e-01 20 chr8:90770414-90770434 1.07e-01 20 chr5:138088726-138088746 8.94e-04 9_[+3(1.95e-05)]_3 chr16:90098473-90098493 7.60e-01 20 chr12:97379447-97379467 1.00e+00 20 chr5:180288531-180288551 5.14e-02 20 chr6:34856923-34856943 2.48e-01 20 chr20:50777497-50777517 6.28e-02 8_[+1(3.80e-05)]_4 chr1:27995736-27995756 1.86e-01 20 chr11:32851433-32851453 1.84e-01 20 chr6:30851107-30851127 7.67e-02 1_[+1(3.80e-05)]_11 chr11:65548585-65548605 6.83e-01 20 chr19:38210767-38210787 6.24e-02 20 chr7:65878877-65878897 3.60e-02 11_[+3(1.95e-05)]_1 chr20:5627499-5627519 1.91e-02 20 chr5:124747872-124747892 7.67e-01 20 chr16:88604338-88604358 1.64e-01 20 chr14:24836410-24836430 1.17e-01 20 chr1:1208074-1208094 1.13e-03 4_[+3(1.95e-05)]_8 chr22:36806177-36806197 8.67e-01 20 chr12:100967804-10096782 2.73e-01 20 chr21:38338865-38338885 2.31e-01 20 chr2:73144667-73144687 9.98e-01 20 chr8:141467543-141467563 9.56e-01 20 chr8:145692475-145692495 3.36e-01 20 chr2:220118853-220118873 1.25e-01 20 chr12:51158056-51158076 9.67e-01 20 chr19:59050054-59050074 9.50e-03 20 chr14:94437264-94437284 1.76e-04 12_[+2(3.47e-06)] chr11:2952062-2952082 5.03e-01 20 chr4:128887002-128887022 1.20e-01 20 chr6:36333025-36333045 2.44e-01 20 chr7:44788650-44788670 2.71e-01 20 chr10:3215494-3215514 5.47e-02 20 chr14:23288869-23288889 9.99e-01 20 chr9:108007421-108007441 9.27e-01 20 chr4:83352316-83352336 4.55e-06 5_[+2(1.71e-06)]_7 chr11:66246582-66246602 9.96e-01 20 chr11:69313595-69313615 3.94e-01 20 chr4:110651124-110651144 3.13e-02 20 chr15:75135157-75135177 1.46e-01 20 chr11:22851116-22851136 9.36e-01 20 chr12:124198539-12419855 6.17e-02 20 chrX:1588322-1588342 4.96e-01 20 chr3:44100138-44100158 1.80e-02 20 chr2:230931829-230931849 9.63e-01 20 chr19:47217937-47217957 1.00e-04 5_[+2(1.71e-06)]_7 chr4:120133830-120133850 9.99e-01 20 chr13:27752225-27752245 8.01e-01 20 chr9:101017835-101017855 9.81e-01 20 chr15:101548847-10154886 4.32e-03 20 chr11:67771118-67771138 3.15e-01 20 chr2:265232-265252 7.67e-01 20 chr22:38003244-38003264 1.62e-02 12_[+1(3.80e-05)] chr17:1958230-1958250 3.95e-01 20 chr3:121740944-121740964 3.70e-02 20 chr12:116355148-11635516 7.44e-01 20 chr2:264712-264732 6.80e-02 7_[+1(9.50e-05)]_5 chr15:94774831-94774851 4.56e-02 5_[+1(3.80e-05)]_7 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n10.farnam.hpc.yale.internal ********************************************************************************