******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/ZBTB40.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr21:46349577-46349597 1.0000 20 chr19:16939897-16939917 1.0000 20 chr6:108199296-108199316 1.0000 20 chr2:163173749-163173769 1.0000 20 chr5:126921519-126921539 1.0000 20 chr11:111246624-11124664 1.0000 20 chr19:2631590-2631610 1.0000 20 chr6:138227357-138227377 1.0000 20 chr10:111716420-11171644 1.0000 20 chrX:13069480-13069500 1.0000 20 chr19:2619264-2619284 1.0000 20 chr11:64629082-64629102 1.0000 20 chr20:5585628-5585648 1.0000 20 chr19:14202489-14202509 1.0000 20 chr2:231580072-231580092 1.0000 20 chr16:3658227-3658247 1.0000 20 chr14:95970480-95970500 1.0000 20 chr2:10229892-10229912 1.0000 20 chr15:63961048-63961068 1.0000 20 chr19:50681741-50681761 1.0000 20 chr1:53757477-53757497 1.0000 20 chr19:2417034-2417054 1.0000 20 chr17:28440431-28440451 1.0000 20 chr10:34809624-34809644 1.0000 20 chr4:8393922-8393942 1.0000 20 chr6:3382872-3382892 1.0000 20 chr16:74641318-74641338 1.0000 20 chr3:195630668-195630688 1.0000 20 chr1:51954136-51954156 1.0000 20 chr6:37621841-37621861 1.0000 20 chr2:30561524-30561544 1.0000 20 chr7:27930121-27930141 1.0000 20 chr14:90234453-90234473 1.0000 20 chr12:93530554-93530574 1.0000 20 chr15:42783399-42783419 1.0000 20 chr2:203534819-203534839 1.0000 20 chr3:28193452-28193472 1.0000 20 chr2:176046560-176046580 1.0000 20 chr12:776089-776109 1.0000 20 chr3:133176534-133176554 1.0000 20 chr21:43813899-43813919 1.0000 20 chr6:6584264-6584284 1.0000 20 chr5:150508450-150508470 1.0000 20 chr20:42356792-42356812 1.0000 20 chr21:30497126-30497146 1.0000 20 chr6:6915714-6915734 1.0000 20 chr8:123931250-123931270 1.0000 20 chr1:155113014-155113034 1.0000 20 chr19:55850607-55850627 1.0000 20 chr3:132379083-132379103 1.0000 20 chr3:17789133-17789153 1.0000 20 chr4:6197632-6197652 1.0000 20 chr6:111805546-111805566 1.0000 20 chr7:72299854-72299874 1.0000 20 chr14:52456113-52456133 1.0000 20 chr13:28711289-28711309 1.0000 20 chr18:23747794-23747814 1.0000 20 chrX:54070727-54070747 1.0000 20 chr5:77005988-77006008 1.0000 20 chr6:157300202-157300222 1.0000 20 chr8:182436-182456 1.0000 20 chr17:34906525-34906545 1.0000 20 chr10:63747465-63747485 1.0000 20 chr2:208202314-208202334 1.0000 20 chr14:53777375-53777395 1.0000 20 chr15:70964571-70964591 1.0000 20 chr7:130507715-130507735 1.0000 20 chr19:50169254-50169274 1.0000 20 chr12:118483835-11848385 1.0000 20 chr17:18684527-18684547 1.0000 20 chr18:33907864-33907884 1.0000 20 chr2:238875538-238875558 1.0000 20 chrX:71792843-71792863 1.0000 20 chr7:2178147-2178167 1.0000 20 chr11:95968434-95968454 1.0000 20 chr15:57445570-57445590 1.0000 20 chr7:66460778-66460798 1.0000 20 chr19:35168164-35168184 1.0000 20 chr16:56764001-56764021 1.0000 20 chr2:231478956-231478976 1.0000 20 chr6:28220047-28220067 1.0000 20 chr2:135041877-135041897 1.0000 20 chr3:61774491-61774511 1.0000 20 chr3:121953153-121953173 1.0000 20 chr6:108616206-108616226 1.0000 20 chr19:17270597-17270617 1.0000 20 chr7:135649703-135649723 1.0000 20 chr13:111205963-11120598 1.0000 20 chr5:68855986-68856006 1.0000 20 chr7:102988075-102988095 1.0000 20 chrX:19003092-19003112 1.0000 20 chr1:65389340-65389360 1.0000 20 chr11:57434783-57434803 1.0000 20 chrX:108780068-108780088 1.0000 20 chr19:50370627-50370647 1.0000 20 chr13:46038871-46038891 1.0000 20 chr15:64388184-64388204 1.0000 20 chr20:30865344-30865364 1.0000 20 chr11:64823160-64823180 1.0000 20 chr5:118873470-118873490 1.0000 20 chr5:14676035-14676055 1.0000 20 chr10:15001863-15001883 1.0000 20 chr8:99257365-99257385 1.0000 20 chr5:145214954-145214974 1.0000 20 chr17:37844328-37844348 1.0000 20 chr13:77599885-77599905 1.0000 20 chr1:762792-762812 1.0000 20 chr18:72265013-72265033 1.0000 20 chr11:8553834-8553854 1.0000 20 chrX:119077749-119077769 1.0000 20 chr1:154946801-154946821 1.0000 20 chr2:233415343-233415363 1.0000 20 chr15:57998886-57998906 1.0000 20 chr14:52881002-52881022 1.0000 20 chr17:15587625-15587645 1.0000 20 chr3:178866006-178866026 1.0000 20 chr14:35761592-35761612 1.0000 20 chr3:186251941-186251961 1.0000 20 chr20:48532178-48532198 1.0000 20 chr22:27068789-27068809 1.0000 20 chr4:3668232-3668252 1.0000 20 chr6:11712414-11712434 1.0000 20 chr7:6865978-6865998 1.0000 20 chr17:76374687-76374707 1.0000 20 chr4:41937144-41937164 1.0000 20 chr14:69658231-69658251 1.0000 20 chr15:89984932-89984952 1.0000 20 chr16:81832902-81832922 1.0000 20 chr19:58038718-58038738 1.0000 20 chr7:25157943-25157963 1.0000 20 chr11:77134855-77134875 1.0000 20 chr9:125675574-125675594 1.0000 20 chr15:85259395-85259415 1.0000 20 chr2:27994606-27994626 1.0000 20 chr2:169215763-169215783 1.0000 20 chr2:9920752-9920772 1.0000 20 chr2:175260413-175260433 1.0000 20 chr17:70462952-70462972 1.0000 20 chr11:46958197-46958217 1.0000 20 chr12:123459246-12345926 1.0000 20 chr16:31085679-31085699 1.0000 20 chr2:118985874-118985894 1.0000 20 chrX:49091996-49092016 1.0000 20 chr6:99873214-99873234 1.0000 20 chr14:95964096-95964116 1.0000 20 chr19:3450886-3450906 1.0000 20 chr22:41682546-41682566 1.0000 20 chr19:14416765-14416785 1.0000 20 chr13:41837673-41837693 1.0000 20 chr15:40675125-40675145 1.0000 20 chr5:135468575-135468595 1.0000 20 chr5:59110029-59110049 1.0000 20 chr10:103348010-10334803 1.0000 20 chr1:28415125-28415145 1.0000 20 chr13:100150852-10015087 1.0000 20 chr20:19997958-19997978 1.0000 20 chr10:32167583-32167603 1.0000 20 chr1:198610832-198610852 1.0000 20 chr2:242049381-242049401 1.0000 20 chr1:150039793-150039813 1.0000 20 chr11:43702925-43702945 1.0000 20 chr19:37960255-37960275 1.0000 20 chr14:31248533-31248553 1.0000 20 chr11:11473480-11473500 1.0000 20 chrX:21857659-21857679 1.0000 20 chr1:225654967-225654987 1.0000 20 chr9:33076656-33076676 1.0000 20 chr2:118845952-118845972 1.0000 20 chr7:93812741-93812761 1.0000 20 chr20:47883970-47883990 1.0000 20 chr19:2331881-2331901 1.0000 20 chr18:33196969-33196989 1.0000 20 chr14:97918830-97918850 1.0000 20 chr12:92856558-92856578 1.0000 20 chr3:130465664-130465684 1.0000 20 chr12:6833005-6833025 1.0000 20 chr1:168378217-168378237 1.0000 20 chr19:4182534-4182554 1.0000 20 chr3:15469044-15469064 1.0000 20 chr3:13493386-13493406 1.0000 20 chr15:40331358-40331378 1.0000 20 chr18:33552585-33552605 1.0000 20 chr19:8060402-8060422 1.0000 20 chr6:7390023-7390043 1.0000 20 chr12:54582871-54582891 1.0000 20 chrX:153236672-153236692 1.0000 20 chr19:9879424-9879444 1.0000 20 chr15:68153142-68153162 1.0000 20 chr19:52643150-52643170 1.0000 20 chr20:46063462-46063482 1.0000 20 chr22:31556084-31556104 1.0000 20 chr6:20703457-20703477 1.0000 20 chr17:61904541-61904561 1.0000 20 chr17:42264318-42264338 1.0000 20 chr5:171433853-171433873 1.0000 20 chr1:20834661-20834681 1.0000 20 chr12:98746182-98746202 1.0000 20 chr3:69484633-69484653 1.0000 20 chr19:16607457-16607477 1.0000 20 chr10:26986449-26986469 1.0000 20 chr7:19753575-19753595 1.0000 20 chr3:88199015-88199035 1.0000 20 chr4:48197432-48197452 1.0000 20 chr10:75490273-75490293 1.0000 20 chr19:5903874-5903894 1.0000 20 chr8:110346281-110346301 1.0000 20 chr1:161123954-161123974 1.0000 20 chr9:130700134-130700154 1.0000 20 chr19:3435224-3435244 1.0000 20 chr7:97601686-97601706 1.0000 20 chr8:21867756-21867776 1.0000 20 chr5:88115569-88115589 1.0000 20 chr12:6602552-6602572 1.0000 20 chr22:40742514-40742534 1.0000 20 chr13:26796498-26796518 1.0000 20 chr20:2489777-2489797 1.0000 20 chr16:1823161-1823181 1.0000 20 chr12:43639915-43639935 1.0000 20 chr5:271510-271530 1.0000 20 chr1:235119954-235119974 1.0000 20 chr19:50490589-50490609 1.0000 20 chr1:226927369-226927389 1.0000 20 chr6:31620209-31620229 1.0000 20 chr21:33984910-33984930 1.0000 20 chr1:176176209-176176229 1.0000 20 chrX:103401523-103401543 1.0000 20 chr12:50794574-50794594 1.0000 20 chr19:2284276-2284296 1.0000 20 chr16:11875151-11875171 1.0000 20 chr6:159420868-159420888 1.0000 20 chr17:37793573-37793593 1.0000 20 chr11:68034578-68034598 1.0000 20 chr10:124713745-12471376 1.0000 20 chr3:101280663-101280683 1.0000 20 chr5:114598585-114598605 1.0000 20 chr3:45430081-45430101 1.0000 20 chr12:9102574-9102594 1.0000 20 chr11:118122918-11812293 1.0000 20 chr19:56826240-56826260 1.0000 20 chr2:178483520-178483540 1.0000 20 chr9:97658150-97658170 1.0000 20 chr7:44084184-44084204 1.0000 20 chr12:6449267-6449287 1.0000 20 chr7:99097924-99097944 1.0000 20 chr12:40015648-40015668 1.0000 20 chr6:71562533-71562553 1.0000 20 chr19:507400-507420 1.0000 20 chr4:119606538-119606558 1.0000 20 chr14:45604975-45604995 1.0000 20 chr11:31391374-31391394 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_ZBTB40/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/ZBTB40.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.265 C 0.223 G 0.232 T 0.279 Background letter frequencies (from file dataset with add-one prior applied): A 0.265 C 0.223 G 0.232 T 0.279 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF MAATAAAR MEME-1 width = 8 sites = 43 llr = 367 E-value = 3.0e-046 ******************************************************************************** -------------------------------------------------------------------------------- Motif MAATAAAR MEME-1 Description -------------------------------------------------------------------------------- Simplified A 3aa:aaa4 pos.-specific C 5::1:::: probability G :::::::6 matrix T 2::9:::: bits 2.2 1.9 * *** 1.7 ** *** 1.5 ****** Relative 1.3 ****** Entropy 1.1 ******* (12.3 bits) 0.9 ******* 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAATAAAG consensus A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAATAAAR MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr17:76374687-76374707 11 1.89e-05 TCGCCTTTGT CAATAAAG TT chr13:46038871-46038891 1 1.89e-05 . CAATAAAG TTATTGATGT chr18:33907864-33907884 10 1.89e-05 cctgtgttc caataaag ctt chr12:118483835-11848385 8 1.89e-05 ttcttgt caataaag tttta chr14:53777375-53777395 4 1.89e-05 att caataaag tttcagcat chr5:77005988-77006008 11 1.89e-05 aattatatct caataaag ct chr19:55850607-55850627 11 1.89e-05 GCAGAGCTGT CAATAAAG TT chr20:46063462-46063482 9 4.04e-05 ttgtgttc caataaaa cttt chr14:97918830-97918850 10 4.04e-05 gctgtgttc caataaaa ctt chr19:2331881-2331901 3 4.04e-05 tc caataaaa ctttatttac chr17:70462952-70462972 10 4.04e-05 gctgagtct caataaaa ctt chr2:9920752-9920772 13 4.04e-05 ggctgtgatt caataaaa chr5:118873470-118873490 13 4.04e-05 gactgtgttc caataaaa chr3:61774491-61774511 2 4.04e-05 c caataaaa ctttatttag chr2:231478956-231478976 6 4.04e-05 tgttc caataaaa ctttatt chr2:30561524-30561544 13 4.04e-05 gcctgtgttc caataaaa chr4:8393922-8393942 5 4.04e-05 gttc caataaaa ctttattt chr19:2631590-2631610 7 4.04e-05 gtgtgc caataaaa ctttat chr2:163173749-163173769 7 4.04e-05 gtgttc caataaaa ctttat chr11:11473480-11473500 12 6.28e-05 ttgtctttgt aaataaag t chr5:59110029-59110049 2 6.28e-05 t aaataaag ctttattggg chr19:14416765-14416785 4 6.28e-05 tgt aaataaag ttttattgg chr2:169215763-169215783 13 6.28e-05 tgtctgttgt aaataaag chr11:64823160-64823180 4 6.28e-05 gtt aaataaag tttctgttt chr7:135649703-135649723 1 6.28e-05 . aaataaag ttttattgga chr11:95968434-95968454 1 6.28e-05 . aaataaag ttttattgga chr21:30497126-30497146 12 6.28e-05 ctgtttttgt aaataaag t chr12:93530554-93530574 10 6.28e-05 tgtttttgt aaataaag ttt chr17:28440431-28440451 4 6.28e-05 ggt aaataaag ttttattgg chr11:64629082-64629102 12 6.28e-05 ctgtttgtat aaataaag t chr1:226927369-226927389 10 1.12e-04 AAATGTTTT TAATAAAG TTT chr4:48197432-48197452 13 1.12e-04 TAATTGCTAC TAATAAAG chr5:135468575-135468595 11 1.12e-04 GCCGAGCTGC TAATAAAG TT chr6:3382872-3382892 10 1.12e-04 tgcttttgt taataaag ctt chr5:126921519-126921539 3 1.12e-04 tg taataaag ttttatttga chr12:98746182-98746202 8 1.39e-04 tgtattc taataaaa cttta chr4:6197632-6197652 6 1.39e-04 tgttc taataaaa ctttatt chr14:95964096-95964116 6 1.71e-04 cgttc caacaaaa ctttatt chr11:77134855-77134875 9 1.71e-04 ctatgttt caacaaaa cttt chr5:88115569-88115589 12 1.88e-04 ctgtttttgt cagtaaag c chr2:178483520-178483540 13 2.87e-04 AATCTGTTAG GAATAAAA chr18:33196969-33196989 8 2.87e-04 TGAAAAC AAACAAAA CTTTA chr3:195630668-195630688 8 3.48e-04 aaggagg aagtaaaa cttta -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAATAAAR MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:76374687-76374707 1.9e-05 10_[+1]_2 chr13:46038871-46038891 1.9e-05 [+1]_12 chr18:33907864-33907884 1.9e-05 9_[+1]_3 chr12:118483835-11848385 1.9e-05 7_[+1]_5 chr14:53777375-53777395 1.9e-05 3_[+1]_9 chr5:77005988-77006008 1.9e-05 10_[+1]_2 chr19:55850607-55850627 1.9e-05 10_[+1]_2 chr20:46063462-46063482 4e-05 8_[+1]_4 chr14:97918830-97918850 4e-05 9_[+1]_3 chr19:2331881-2331901 4e-05 2_[+1]_10 chr17:70462952-70462972 4e-05 9_[+1]_3 chr2:9920752-9920772 4e-05 12_[+1] chr5:118873470-118873490 4e-05 12_[+1] chr3:61774491-61774511 4e-05 1_[+1]_11 chr2:231478956-231478976 4e-05 5_[+1]_7 chr2:30561524-30561544 4e-05 12_[+1] chr4:8393922-8393942 4e-05 4_[+1]_8 chr19:2631590-2631610 4e-05 6_[+1]_6 chr2:163173749-163173769 4e-05 6_[+1]_6 chr11:11473480-11473500 6.3e-05 11_[+1]_1 chr5:59110029-59110049 6.3e-05 1_[+1]_11 chr19:14416765-14416785 6.3e-05 3_[+1]_9 chr2:169215763-169215783 6.3e-05 12_[+1] chr11:64823160-64823180 6.3e-05 3_[+1]_9 chr7:135649703-135649723 6.3e-05 [+1]_12 chr11:95968434-95968454 6.3e-05 [+1]_12 chr21:30497126-30497146 6.3e-05 11_[+1]_1 chr12:93530554-93530574 6.3e-05 9_[+1]_3 chr17:28440431-28440451 6.3e-05 3_[+1]_9 chr11:64629082-64629102 6.3e-05 11_[+1]_1 chr1:226927369-226927389 0.00011 9_[+1]_3 chr4:48197432-48197452 0.00011 12_[+1] chr5:135468575-135468595 0.00011 10_[+1]_2 chr6:3382872-3382892 0.00011 9_[+1]_3 chr5:126921519-126921539 0.00011 2_[+1]_10 chr12:98746182-98746202 0.00014 7_[+1]_5 chr4:6197632-6197652 0.00014 5_[+1]_7 chr14:95964096-95964116 0.00017 5_[+1]_7 chr11:77134855-77134875 0.00017 8_[+1]_4 chr5:88115569-88115589 0.00019 11_[+1]_1 chr2:178483520-178483540 0.00029 12_[+1] chr18:33196969-33196989 0.00029 7_[+1]_5 chr3:195630668-195630688 0.00035 7_[+1]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAATAAAR MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MAATAAAR width=8 seqs=43 chr17:76374687-76374707 ( 11) CAATAAAG 1 chr13:46038871-46038891 ( 1) CAATAAAG 1 chr18:33907864-33907884 ( 10) CAATAAAG 1 chr12:118483835-11848385 ( 8) CAATAAAG 1 chr14:53777375-53777395 ( 4) CAATAAAG 1 chr5:77005988-77006008 ( 11) CAATAAAG 1 chr19:55850607-55850627 ( 11) CAATAAAG 1 chr20:46063462-46063482 ( 9) CAATAAAA 1 chr14:97918830-97918850 ( 10) CAATAAAA 1 chr19:2331881-2331901 ( 3) CAATAAAA 1 chr17:70462952-70462972 ( 10) CAATAAAA 1 chr2:9920752-9920772 ( 13) CAATAAAA 1 chr5:118873470-118873490 ( 13) CAATAAAA 1 chr3:61774491-61774511 ( 2) CAATAAAA 1 chr2:231478956-231478976 ( 6) CAATAAAA 1 chr2:30561524-30561544 ( 13) CAATAAAA 1 chr4:8393922-8393942 ( 5) CAATAAAA 1 chr19:2631590-2631610 ( 7) CAATAAAA 1 chr2:163173749-163173769 ( 7) CAATAAAA 1 chr11:11473480-11473500 ( 12) AAATAAAG 1 chr5:59110029-59110049 ( 2) AAATAAAG 1 chr19:14416765-14416785 ( 4) AAATAAAG 1 chr2:169215763-169215783 ( 13) AAATAAAG 1 chr11:64823160-64823180 ( 4) AAATAAAG 1 chr7:135649703-135649723 ( 1) AAATAAAG 1 chr11:95968434-95968454 ( 1) AAATAAAG 1 chr21:30497126-30497146 ( 12) AAATAAAG 1 chr12:93530554-93530574 ( 10) AAATAAAG 1 chr17:28440431-28440451 ( 4) AAATAAAG 1 chr11:64629082-64629102 ( 12) AAATAAAG 1 chr1:226927369-226927389 ( 10) TAATAAAG 1 chr4:48197432-48197452 ( 13) TAATAAAG 1 chr5:135468575-135468595 ( 11) TAATAAAG 1 chr6:3382872-3382892 ( 10) TAATAAAG 1 chr5:126921519-126921539 ( 3) TAATAAAG 1 chr12:98746182-98746202 ( 8) TAATAAAA 1 chr4:6197632-6197652 ( 6) TAATAAAA 1 chr14:95964096-95964116 ( 6) CAACAAAA 1 chr11:77134855-77134875 ( 9) CAACAAAA 1 chr5:88115569-88115589 ( 12) CAGTAAAG 1 chr2:178483520-178483540 ( 13) GAATAAAA 1 chr18:33196969-33196989 ( 8) AAACAAAA 1 chr3:195630668-195630688 ( 8) AAGTAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAATAAAR MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 5.73736 E= 3.0e-046 19 120 -332 -78 191 -1207 -1207 -1207 185 -1207 -232 -1207 -1207 -168 -1207 174 191 -1207 -1207 -1207 191 -1207 -1207 -1207 191 -1207 -1207 -1207 74 -1207 127 -1207 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAATAAAR MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 43 E= 3.0e-046 0.302326 0.511628 0.023256 0.162791 1.000000 0.000000 0.000000 0.000000 0.953488 0.000000 0.046512 0.000000 0.000000 0.069767 0.000000 0.930233 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.441860 0.000000 0.558140 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAATAAAR MEME-1 regular expression -------------------------------------------------------------------------------- [CA]AATAAA[GA] -------------------------------------------------------------------------------- Time 2.12 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTATTKR MEME-2 width = 8 sites = 40 llr = 318 E-value = 5.5e-030 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTATTKR MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::8:::6 pos.-specific C ::::::1: probability G :::1::64 matrix T aaa1aa3: bits 2.2 1.9 ** * 1.7 *** ** 1.5 *** ** Relative 1.3 *** ** Entropy 1.1 *** ** * (11.5 bits) 0.9 ****** * 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTATTGA consensus TG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTATTKR MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr15:89984932-89984952 1 2.75e-05 . tttattga gcatgatgat chr20:42356792-42356812 4 2.75e-05 agt tttattga agcacagcc chrX:13069480-13069500 3 2.75e-05 gt tttattga aacacagcta chr21:46349577-46349597 3 2.75e-05 ac tttattga caaaaacagg chr6:71562533-71562553 7 5.17e-05 taaagt tttattgg cacaca chr9:97658150-97658170 4 5.17e-05 agt tttattgg agcacagca chr19:8060402-8060422 8 5.17e-05 ataaagt tttattgg aatac chr5:59110029-59110049 11 5.17e-05 taaataaagc tttattgg ga chr19:14416765-14416785 13 5.17e-05 taaataaagt tttattgg chr19:3450886-3450906 2 5.17e-05 t tttattgg caaacagcca chr5:145214954-145214974 4 5.17e-05 AAC TTTATTGG CCACTCGGA chr7:135649703-135649723 10 5.17e-05 aaataaagt tttattgg aac chr19:17270597-17270617 6 5.17e-05 aaagt tttattgg cacatgg chr11:95968434-95968454 10 5.17e-05 aaataaagt tttattgg aac chr3:17789133-17789153 1 5.17e-05 . tttattgg tgttctctca chr3:133176534-133176554 3 5.17e-05 gt tttattgg aacatgacca chr17:28440431-28440451 13 5.17e-05 taaataaagt tttattgg chr1:235119954-235119974 7 8.48e-05 taaagc tttattta caaaaa chr19:2331881-2331901 12 8.48e-05 ccaataaaac tttattta c chr13:111205963-11120598 7 8.48e-05 taaaac tttattta caacaa chr3:61774491-61774511 11 8.48e-05 ccaataaaac tttattta ga chr10:63747465-63747485 4 8.48e-05 aac tttattta caaaaacag chr3:28193452-28193472 10 8.48e-05 TGAAGACAG TTTATTTA GTA chr1:53757477-53757497 1 8.48e-05 . tttattta caaaaaactg chr11:111246624-11124664 7 8.48e-05 taaaac tttattta caaatg chr14:52456113-52456133 6 1.14e-04 TAAAG TTTATTTG AGCGTCG chr5:126921519-126921539 12 1.14e-04 gtaataaagt tttatttg a chr5:14676035-14676055 4 1.43e-04 aga ttttttga aacatatta chr16:81832902-81832922 6 1.69e-04 aaaac tttattca caagaca chr19:16939897-16939917 5 1.69e-04 aaac tttattca gggaccct chr10:32167583-32167603 9 2.42e-04 aataaagt tttgttga aaca chr22:41682546-41682566 2 2.42e-04 C TTTGTTGA TAACAGGTAC chr19:14202489-14202509 13 2.77e-04 AGCGACACTT TTTTTTTA chr20:5585628-5585648 2 2.77e-04 G TTTTTTTA AAAAAAGCAA chr14:31248533-31248553 11 3.28e-04 ccaacacctg tttttttg ta chr2:118985874-118985894 2 3.83e-04 C TTTATTAA TATTTTTAAA chr7:25157943-25157963 6 3.83e-04 ttttt tttcttga gacggag chr2:118845952-118845972 5 4.34e-04 ACGT CTTATTGA CAGCAGGA chr2:242049381-242049401 4 5.33e-04 tta tttataga aacaagagg chr1:168378217-168378237 1 6.04e-04 . TTTTTTCA ACTCATAAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTATTKR MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:89984932-89984952 2.8e-05 [+2]_12 chr20:42356792-42356812 2.8e-05 3_[+2]_9 chrX:13069480-13069500 2.8e-05 2_[+2]_10 chr21:46349577-46349597 2.8e-05 2_[+2]_10 chr6:71562533-71562553 5.2e-05 6_[+2]_6 chr9:97658150-97658170 5.2e-05 3_[+2]_9 chr19:8060402-8060422 5.2e-05 7_[+2]_5 chr5:59110029-59110049 5.2e-05 10_[+2]_2 chr19:14416765-14416785 5.2e-05 12_[+2] chr19:3450886-3450906 5.2e-05 1_[+2]_11 chr5:145214954-145214974 5.2e-05 3_[+2]_9 chr7:135649703-135649723 5.2e-05 9_[+2]_3 chr19:17270597-17270617 5.2e-05 5_[+2]_7 chr11:95968434-95968454 5.2e-05 9_[+2]_3 chr3:17789133-17789153 5.2e-05 [+2]_12 chr3:133176534-133176554 5.2e-05 2_[+2]_10 chr17:28440431-28440451 5.2e-05 12_[+2] chr1:235119954-235119974 8.5e-05 6_[+2]_6 chr19:2331881-2331901 8.5e-05 11_[+2]_1 chr13:111205963-11120598 8.5e-05 6_[+2]_6 chr3:61774491-61774511 8.5e-05 10_[+2]_2 chr10:63747465-63747485 8.5e-05 3_[+2]_9 chr3:28193452-28193472 8.5e-05 9_[+2]_3 chr1:53757477-53757497 8.5e-05 [+2]_12 chr11:111246624-11124664 8.5e-05 6_[+2]_6 chr14:52456113-52456133 0.00011 5_[+2]_7 chr5:126921519-126921539 0.00011 11_[+2]_1 chr5:14676035-14676055 0.00014 3_[+2]_9 chr16:81832902-81832922 0.00017 5_[+2]_7 chr19:16939897-16939917 0.00017 4_[+2]_8 chr10:32167583-32167603 0.00024 8_[+2]_4 chr22:41682546-41682566 0.00024 1_[+2]_11 chr19:14202489-14202509 0.00028 12_[+2] chr20:5585628-5585648 0.00028 1_[+2]_11 chr14:31248533-31248553 0.00033 10_[+2]_2 chr2:118985874-118985894 0.00038 1_[+2]_11 chr7:25157943-25157963 0.00038 5_[+2]_7 chr2:118845952-118845972 0.00043 4_[+2]_8 chr2:242049381-242049401 0.00053 3_[+2]_9 chr1:168378217-168378237 0.0006 [+2]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTATTKR MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTATTKR width=8 seqs=40 chr15:89984932-89984952 ( 1) TTTATTGA 1 chr20:42356792-42356812 ( 4) TTTATTGA 1 chrX:13069480-13069500 ( 3) TTTATTGA 1 chr21:46349577-46349597 ( 3) TTTATTGA 1 chr6:71562533-71562553 ( 7) TTTATTGG 1 chr9:97658150-97658170 ( 4) TTTATTGG 1 chr19:8060402-8060422 ( 8) TTTATTGG 1 chr5:59110029-59110049 ( 11) TTTATTGG 1 chr19:14416765-14416785 ( 13) TTTATTGG 1 chr19:3450886-3450906 ( 2) TTTATTGG 1 chr5:145214954-145214974 ( 4) TTTATTGG 1 chr7:135649703-135649723 ( 10) TTTATTGG 1 chr19:17270597-17270617 ( 6) TTTATTGG 1 chr11:95968434-95968454 ( 10) TTTATTGG 1 chr3:17789133-17789153 ( 1) TTTATTGG 1 chr3:133176534-133176554 ( 3) TTTATTGG 1 chr17:28440431-28440451 ( 13) TTTATTGG 1 chr1:235119954-235119974 ( 7) TTTATTTA 1 chr19:2331881-2331901 ( 12) TTTATTTA 1 chr13:111205963-11120598 ( 7) TTTATTTA 1 chr3:61774491-61774511 ( 11) TTTATTTA 1 chr10:63747465-63747485 ( 4) TTTATTTA 1 chr3:28193452-28193472 ( 10) TTTATTTA 1 chr1:53757477-53757497 ( 1) TTTATTTA 1 chr11:111246624-11124664 ( 7) TTTATTTA 1 chr14:52456113-52456133 ( 6) TTTATTTG 1 chr5:126921519-126921539 ( 12) TTTATTTG 1 chr5:14676035-14676055 ( 4) TTTTTTGA 1 chr16:81832902-81832922 ( 6) TTTATTCA 1 chr19:16939897-16939917 ( 5) TTTATTCA 1 chr10:32167583-32167603 ( 9) TTTGTTGA 1 chr22:41682546-41682566 ( 2) TTTGTTGA 1 chr19:14202489-14202509 ( 13) TTTTTTTA 1 chr20:5585628-5585648 ( 2) TTTTTTTA 1 chr14:31248533-31248553 ( 11) TTTTTTTG 1 chr2:118985874-118985894 ( 2) TTTATTAA 1 chr7:25157943-25157963 ( 6) TTTCTTGA 1 chr2:118845952-118845972 ( 5) CTTATTGA 1 chr2:242049381-242049401 ( 4) TTTATAGA 1 chr1:168378217-168378237 ( 1) TTTTTTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTATTKR MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.27845 E= 5.5e-030 -1197 -316 -1197 180 -1197 -1197 -1197 184 -1197 -1197 -1197 184 159 -316 -221 -116 -1197 -1197 -1197 184 -340 -1197 -1197 180 -340 -157 131 22 118 -1197 79 -1197 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTATTKR MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 40 E= 5.5e-030 0.000000 0.025000 0.000000 0.975000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.800000 0.025000 0.050000 0.125000 0.000000 0.000000 0.000000 1.000000 0.025000 0.000000 0.000000 0.975000 0.025000 0.075000 0.575000 0.325000 0.600000 0.000000 0.400000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTATTKR MEME-2 regular expression -------------------------------------------------------------------------------- TTTATT[GT][AG] -------------------------------------------------------------------------------- Time 2.83 secs. ******************************************************************************** ******************************************************************************** MOTIF CCGGAAGY MEME-3 width = 8 sites = 22 llr = 184 E-value = 1.6e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCGGAAGY MEME-3 Description -------------------------------------------------------------------------------- Simplified A :1::a9:1 pos.-specific C 88::::23 probability G 2:aa::81 matrix T :::::1:5 bits 2.2 ** 1.9 *** 1.7 *** 1.5 * ***** Relative 1.3 ******* Entropy 1.1 ******* (12.0 bits) 0.9 ******* 0.6 ******* 0.4 ******* 0.2 ******** 0.0 -------- Multilevel CCGGAAGT consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGAAGY MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr4:119606538-119606558 5 1.22e-05 CGCG CCGGAAGT CTCTACTG chr15:40331358-40331378 10 1.22e-05 CAGTGAGAG CCGGAAGT TCG chr3:15469044-15469064 8 1.22e-05 TAGGAAC CCGGAAGT TCCTA chr15:40675125-40675145 4 1.22e-05 CTA CCGGAAGT TTCTATTTG chr2:233415343-233415363 8 1.22e-05 CGCAAAA CCGGAAGT ACCCG chr17:37844328-37844348 5 1.22e-05 GTAA CCGGAAGT TCCTGTGT chr1:20834661-20834681 11 2.19e-05 GACGCCGGAA CCGGAAGC GG chr1:150039793-150039813 6 2.19e-05 GACTC CCGGAAGC CGAATCC chr3:101280663-101280683 1 3.20e-05 . CCGGAAGG GAGAGGGCGG chr12:54582871-54582891 12 3.20e-05 TGCTCCAATC CCGGAAGG C chr2:175260413-175260433 6 4.37e-05 CCTAA CCGGAACT GCGTTTC chr16:31085679-31085699 13 5.64e-05 TGCTCCCGAA GCGGAAGT chr9:125675574-125675594 4 6.79e-05 AAG CCGGAAGA TGGACTTAG chr22:27068789-27068809 5 1.02e-04 TACA CAGGAAGT CGGCCAGA chr6:28220047-28220067 7 1.02e-04 GGGGCA CAGGAAGT CTCGAT chrX:119077749-119077769 1 1.13e-04 . CAGGAAGC GATGTGTGCA chr1:28415125-28415145 5 1.57e-04 TGAC CCGGATGC GCATCGCT chrX:19003092-19003112 7 1.94e-04 CGCCTA GCGGAACT GGAGTA chr11:31391374-31391394 11 2.17e-04 GTGACTTCCG GCGGAAGA AG chr22:31556084-31556104 1 2.50e-04 . GCGGAACC TTAGAGCTTC chr2:176046560-176046580 1 3.61e-04 . CGGGAAGG ACAACGACAA chr13:100150852-10015087 9 3.81e-04 AGGTGAGG CCGGATCC GGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGAAGY MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:119606538-119606558 1.2e-05 4_[+3]_8 chr15:40331358-40331378 1.2e-05 9_[+3]_3 chr3:15469044-15469064 1.2e-05 7_[+3]_5 chr15:40675125-40675145 1.2e-05 3_[+3]_9 chr2:233415343-233415363 1.2e-05 7_[+3]_5 chr17:37844328-37844348 1.2e-05 4_[+3]_8 chr1:20834661-20834681 2.2e-05 10_[+3]_2 chr1:150039793-150039813 2.2e-05 5_[+3]_7 chr3:101280663-101280683 3.2e-05 [+3]_12 chr12:54582871-54582891 3.2e-05 11_[+3]_1 chr2:175260413-175260433 4.4e-05 5_[+3]_7 chr16:31085679-31085699 5.6e-05 12_[+3] chr9:125675574-125675594 6.8e-05 3_[+3]_9 chr22:27068789-27068809 0.0001 4_[+3]_8 chr6:28220047-28220067 0.0001 6_[+3]_6 chrX:119077749-119077769 0.00011 [+3]_12 chr1:28415125-28415145 0.00016 4_[+3]_8 chrX:19003092-19003112 0.00019 6_[+3]_6 chr11:31391374-31391394 0.00022 10_[+3]_2 chr22:31556084-31556104 0.00025 [+3]_12 chr2:176046560-176046580 0.00036 [+3]_12 chr13:100150852-10015087 0.00038 8_[+3]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGAAGY MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCGGAAGY width=8 seqs=22 chr4:119606538-119606558 ( 5) CCGGAAGT 1 chr15:40331358-40331378 ( 10) CCGGAAGT 1 chr3:15469044-15469064 ( 8) CCGGAAGT 1 chr15:40675125-40675145 ( 4) CCGGAAGT 1 chr2:233415343-233415363 ( 8) CCGGAAGT 1 chr17:37844328-37844348 ( 5) CCGGAAGT 1 chr1:20834661-20834681 ( 11) CCGGAAGC 1 chr1:150039793-150039813 ( 6) CCGGAAGC 1 chr3:101280663-101280683 ( 1) CCGGAAGG 1 chr12:54582871-54582891 ( 12) CCGGAAGG 1 chr2:175260413-175260433 ( 6) CCGGAACT 1 chr16:31085679-31085699 ( 13) GCGGAAGT 1 chr9:125675574-125675594 ( 4) CCGGAAGA 1 chr22:27068789-27068809 ( 5) CAGGAAGT 1 chr6:28220047-28220067 ( 7) CAGGAAGT 1 chrX:119077749-119077769 ( 1) CAGGAAGC 1 chr1:28415125-28415145 ( 5) CCGGATGC 1 chrX:19003092-19003112 ( 7) GCGGAACT 1 chr11:31391374-31391394 ( 11) GCGGAAGA 1 chr22:31556084-31556104 ( 1) GCGGAACC 1 chr2:176046560-176046580 ( 1) CGGGAAGG 1 chr13:100150852-10015087 ( 9) CCGGATCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGAAGY MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.22846 E= 1.6e-010 -1110 187 -35 -1110 -96 187 -235 -1110 -1110 -1110 211 -1110 -1110 -1110 211 -1110 191 -1110 -1110 -1110 178 -1110 -1110 -162 -1110 -30 182 -1110 -154 29 -77 84 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGAAGY MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 1.6e-010 0.000000 0.818182 0.181818 0.000000 0.136364 0.818182 0.045455 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.909091 0.000000 0.000000 0.090909 0.000000 0.181818 0.818182 0.000000 0.090909 0.272727 0.136364 0.500000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGAAGY MEME-3 regular expression -------------------------------------------------------------------------------- CCGGAAG[TC] -------------------------------------------------------------------------------- Time 3.62 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGTKTTY MEME-4 width = 8 sites = 21 llr = 174 E-value = 3.3e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGTKTTY MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 8::::1:4 probability G ::a:5::: matrix T 2a:a49a6 bits 2.2 * 1.9 ** * 1.7 ** * 1.5 *** ** Relative 1.3 **** ** Entropy 1.1 **** *** (11.9 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTGTGTTT consensus T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGTKTTY MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr10:15001863-15001883 2 2.03e-05 A CTGTGTTT TGTCCGTCCC chr7:72299854-72299874 6 2.03e-05 CAACG CTGTGTTT CAACCCG chr14:97918830-97918850 2 3.65e-05 g ctgtgttc caataaaact chr5:118873470-118873490 5 3.65e-05 gtga ctgtgttc caataaaa chr18:33907864-33907884 2 3.65e-05 c ctgtgttc caataaagct chr21:43813899-43813919 11 3.65e-05 atgagcatgt ctgtgttc ca chr2:30561524-30561544 5 3.65e-05 atgc ctgtgttc caataaaa chr6:108199296-108199316 9 3.65e-05 aagtgtgg ctgtgttc taat chr19:2284276-2284296 6 6.09e-05 AGCCT CTGTTTTT GTCAATA chr5:88115569-88115589 2 6.09e-05 c ctgttttt gtcagtaaag chr21:30497126-30497146 2 6.09e-05 a ctgttttt gtaaataaag chr16:3658227-3658247 8 6.09e-05 tggctgc ctgttttt gtaaa chr15:57445570-57445590 8 8.04e-05 agcatgg ctgttttc cagta chr12:40015648-40015668 11 1.06e-04 attctcattt ttgtgttt at chr20:46063462-46063482 1 1.26e-04 . ttgtgttc caataaaact chr7:19753575-19753595 5 1.73e-04 TGGC TTGTTTTT ATCTACAA chr6:11712414-11712434 9 1.73e-04 TTTCTGTT TTGTTTTT TAAA chr19:50490589-50490609 10 2.30e-04 CGCTGCCTG CTGTTCTT GGT chr8:123931250-123931270 7 2.45e-04 CCCAAA CTGTTCTC CCACCT chr3:121953153-121953173 2 2.68e-04 a ctgtattt cagcaaaact chr3:88199015-88199035 13 3.03e-04 AGTGAGGGCA CTGCGTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGTKTTY MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:15001863-15001883 2e-05 1_[+4]_11 chr7:72299854-72299874 2e-05 5_[+4]_7 chr14:97918830-97918850 3.7e-05 1_[+4]_11 chr5:118873470-118873490 3.7e-05 4_[+4]_8 chr18:33907864-33907884 3.7e-05 1_[+4]_11 chr21:43813899-43813919 3.7e-05 10_[+4]_2 chr2:30561524-30561544 3.7e-05 4_[+4]_8 chr6:108199296-108199316 3.7e-05 8_[+4]_4 chr19:2284276-2284296 6.1e-05 5_[+4]_7 chr5:88115569-88115589 6.1e-05 1_[+4]_11 chr21:30497126-30497146 6.1e-05 1_[+4]_11 chr16:3658227-3658247 6.1e-05 7_[+4]_5 chr15:57445570-57445590 8e-05 7_[+4]_5 chr12:40015648-40015668 0.00011 10_[+4]_2 chr20:46063462-46063482 0.00013 [+4]_12 chr7:19753575-19753595 0.00017 4_[+4]_8 chr6:11712414-11712434 0.00017 8_[+4]_4 chr19:50490589-50490609 0.00023 9_[+4]_3 chr8:123931250-123931270 0.00025 6_[+4]_6 chr3:121953153-121953173 0.00027 1_[+4]_11 chr3:88199015-88199035 0.0003 12_[+4] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGTKTTY MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGTKTTY width=8 seqs=21 chr10:15001863-15001883 ( 2) CTGTGTTT 1 chr7:72299854-72299874 ( 6) CTGTGTTT 1 chr14:97918830-97918850 ( 2) CTGTGTTC 1 chr5:118873470-118873490 ( 5) CTGTGTTC 1 chr18:33907864-33907884 ( 2) CTGTGTTC 1 chr21:43813899-43813919 ( 11) CTGTGTTC 1 chr2:30561524-30561544 ( 5) CTGTGTTC 1 chr6:108199296-108199316 ( 9) CTGTGTTC 1 chr19:2284276-2284296 ( 6) CTGTTTTT 1 chr5:88115569-88115589 ( 2) CTGTTTTT 1 chr21:30497126-30497146 ( 2) CTGTTTTT 1 chr16:3658227-3658247 ( 8) CTGTTTTT 1 chr15:57445570-57445590 ( 8) CTGTTTTC 1 chr12:40015648-40015668 ( 11) TTGTGTTT 1 chr20:46063462-46063482 ( 1) TTGTGTTC 1 chr7:19753575-19753595 ( 5) TTGTTTTT 1 chr6:11712414-11712434 ( 9) TTGTTTTT 1 chr19:50490589-50490609 ( 10) CTGTTCTT 1 chr8:123931250-123931270 ( 7) CTGTTCTC 1 chr3:121953153-121953173 ( 2) CTGTATTT 1 chr3:88199015-88199035 ( 13) CTGCGTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGTKTTY MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.25552 E= 3.3e-007 -1104 186 -1104 -55 -1104 -1104 -1104 184 -1104 -1104 211 -1104 -1104 -223 -1104 177 -247 -1104 117 62 -1104 -123 -1104 169 -1104 -1104 -1104 184 -1104 94 -1104 103 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGTKTTY MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 3.3e-007 0.000000 0.809524 0.000000 0.190476 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.047619 0.000000 0.952381 0.047619 0.000000 0.523810 0.428571 0.000000 0.095238 0.000000 0.904762 0.000000 0.000000 0.000000 1.000000 0.000000 0.428571 0.000000 0.571429 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGTKTTY MEME-4 regular expression -------------------------------------------------------------------------------- CTGT[GT]TT[TC] -------------------------------------------------------------------------------- Time 6.69 secs. ******************************************************************************** ******************************************************************************** MOTIF SACTTCCG MEME-5 width = 8 sites = 15 llr = 128 E-value = 2.5e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif SACTTCCG MEME-5 Description -------------------------------------------------------------------------------- Simplified A 17:::::: pos.-specific C 518::aa: probability G 432::::8 matrix T :::aa::2 bits 2.2 ** 1.9 **** 1.7 **** 1.5 ***** Relative 1.3 ****** Entropy 1.1 ****** (12.3 bits) 0.9 ******* 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CACTTCCG consensus GGG T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SACTTCCG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:31620209-31620229 6 1.18e-05 ACGGC CACTTCCG TTTCCCC chr19:9879424-9879444 8 1.18e-05 CGGCTGG CACTTCCG CTTCC chr4:41937144-41937164 9 1.18e-05 GAAAGGAG CACTTCCG GGTT chr11:31391374-31391394 3 2.41e-05 GT GACTTCCG GCGGAAGAAG chr5:68855986-68856006 6 2.41e-05 GGAAT GACTTCCG GGGCGCC chr15:64388184-64388204 5 4.53e-05 TTGC GGCTTCCG CCGCGGGT chr14:35761592-35761612 11 7.17e-05 CAGTCGCTGC AACTTCCG GG chr17:18684527-18684547 9 7.17e-05 GGTCGCCT CAGTTCCG ACCC chr5:271510-271530 1 9.87e-05 . CACTTCCT GTCCCAGGTC chr3:130465664-130465684 9 9.87e-05 TCTGACCT CACTTCCT GTCG chr17:42264318-42264338 3 1.14e-04 GG GACTTCCT GTCCCTGGTA chr9:130700134-130700154 5 1.47e-04 CATC CGGTTCCG GGTCCACG chr10:103348010-10334803 5 1.47e-04 GAAT AGCTTCCG AGTCAGCC chr17:37793573-37793593 1 1.81e-04 . GGGTTCCG TCCGACCCTT chr19:3435224-3435244 9 1.81e-04 CGGAGCCG GCCTTCCG GTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SACTTCCG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:31620209-31620229 1.2e-05 5_[+5]_7 chr19:9879424-9879444 1.2e-05 7_[+5]_5 chr4:41937144-41937164 1.2e-05 8_[+5]_4 chr11:31391374-31391394 2.4e-05 2_[+5]_10 chr5:68855986-68856006 2.4e-05 5_[+5]_7 chr15:64388184-64388204 4.5e-05 4_[+5]_8 chr14:35761592-35761612 7.2e-05 10_[+5]_2 chr17:18684527-18684547 7.2e-05 8_[+5]_4 chr5:271510-271530 9.9e-05 [+5]_12 chr3:130465664-130465684 9.9e-05 8_[+5]_4 chr17:42264318-42264338 0.00011 2_[+5]_10 chr9:130700134-130700154 0.00015 4_[+5]_8 chr10:103348010-10334803 0.00015 4_[+5]_8 chr17:37793573-37793593 0.00018 [+5]_12 chr19:3435224-3435244 0.00018 8_[+5]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SACTTCCG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SACTTCCG width=8 seqs=15 chr6:31620209-31620229 ( 6) CACTTCCG 1 chr19:9879424-9879444 ( 8) CACTTCCG 1 chr4:41937144-41937164 ( 9) CACTTCCG 1 chr11:31391374-31391394 ( 3) GACTTCCG 1 chr5:68855986-68856006 ( 6) GACTTCCG 1 chr15:64388184-64388204 ( 5) GGCTTCCG 1 chr14:35761592-35761612 ( 11) AACTTCCG 1 chr17:18684527-18684547 ( 9) CAGTTCCG 1 chr5:271510-271530 ( 1) CACTTCCT 1 chr3:130465664-130465684 ( 9) CACTTCCT 1 chr17:42264318-42264338 ( 3) GACTTCCT 1 chr9:130700134-130700154 ( 5) CGGTTCCG 1 chr10:103348010-10334803 ( 5) AGCTTCCG 1 chr17:37793573-37793593 ( 1) GGGTTCCG 1 chr19:3435224-3435244 ( 9) GCCTTCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SACTTCCG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.0312 E= 2.5e-002 -99 106 79 -1055 133 -174 20 -1055 -1055 184 -21 -1055 -1055 -1055 -1055 184 -1055 -1055 -1055 184 -1055 216 -1055 -1055 -1055 216 -1055 -1055 -1055 -1055 179 -48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SACTTCCG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 2.5e-002 0.133333 0.466667 0.400000 0.000000 0.666667 0.066667 0.266667 0.000000 0.000000 0.800000 0.200000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.800000 0.200000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SACTTCCG MEME-5 regular expression -------------------------------------------------------------------------------- [CG][AG][CG]TTCC[GT] -------------------------------------------------------------------------------- Time 9.63 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr21:46349577-46349597 6.66e-03 2_[+2(2.75e-05)]_10 chr19:16939897-16939917 4.65e-03 20 chr6:108199296-108199316 4.27e-02 8_[+4(3.65e-05)]_4 chr2:163173749-163173769 3.39e-02 6_[+1(4.04e-05)]_6 chr5:126921519-126921539 5.10e-04 20 chr11:111246624-11124664 1.08e-02 6_[+2(8.48e-05)]_6 chr19:2631590-2631610 5.77e-02 6_[+1(4.04e-05)]_6 chr6:138227357-138227377 1.65e-01 20 chr10:111716420-11171644 3.81e-01 20 chrX:13069480-13069500 8.71e-03 2_[+2(2.75e-05)]_10 chr19:2619264-2619284 5.10e-02 20 chr11:64629082-64629102 8.30e-04 11_[+1(6.28e-05)]_1 chr20:5585628-5585648 1.23e-02 20 chr19:14202489-14202509 6.20e-03 20 chr2:231580072-231580092 7.59e-02 20 chr16:3658227-3658247 1.90e-03 7_[+4(6.09e-05)]_5 chr14:95970480-95970500 4.37e-01 20 chr2:10229892-10229912 3.36e-01 20 chr15:63961048-63961068 9.35e-01 20 chr19:50681741-50681761 8.34e-01 20 chr1:53757477-53757497 1.93e-02 [+2(8.48e-05)]_12 chr19:2417034-2417054 5.28e-01 20 chr17:28440431-28440451 5.85e-04 3_[+1(6.28e-05)]_1_[+2(5.17e-05)] chr10:34809624-34809644 4.27e-01 20 chr4:8393922-8393942 9.83e-03 4_[+1(4.04e-05)]_8 chr6:3382872-3382892 3.96e-03 20 chr16:74641318-74641338 4.06e-01 20 chr3:195630668-195630688 1.42e-02 20 chr1:51954136-51954156 1.22e-01 20 chr6:37621841-37621861 1.46e-01 20 chr2:30561524-30561544 1.24e-04 4_[+4(3.65e-05)]_[+1(4.04e-05)] chr7:27930121-27930141 2.87e-01 20 chr14:90234453-90234473 2.80e-01 20 chr12:93530554-93530574 1.05e-02 9_[+1(6.28e-05)]_3 chr15:42783399-42783419 5.21e-01 20 chr2:203534819-203534839 6.67e-01 20 chr3:28193452-28193472 1.96e-02 9_[+2(8.48e-05)]_3 chr2:176046560-176046580 2.15e-01 20 chr12:776089-776109 3.10e-01 20 chr3:133176534-133176554 3.23e-02 2_[+2(5.17e-05)]_10 chr21:43813899-43813919 8.16e-03 10_[+4(3.65e-05)]_2 chr6:6584264-6584284 1.56e-01 20 chr5:150508450-150508470 4.71e-01 20 chr20:42356792-42356812 1.01e-02 3_[+2(2.75e-05)]_9 chr21:30497126-30497146 8.08e-05 1_[+4(6.09e-05)]_2_[+1(6.28e-05)]_1 chr6:6915714-6915734 8.90e-01 20 chr8:123931250-123931270 1.30e-01 20 chr1:155113014-155113034 6.13e-01 20 chr19:55850607-55850627 2.39e-02 10_[+1(1.89e-05)]_2 chr3:132379083-132379103 6.53e-01 20 chr3:17789133-17789153 1.15e-02 [+2(5.17e-05)]_12 chr4:6197632-6197652 8.23e-02 20 chr6:111805546-111805566 2.90e-01 20 chr7:72299854-72299874 3.89e-02 5_[+4(2.03e-05)]_7 chr14:52456113-52456133 6.15e-02 20 chr13:28711289-28711309 5.67e-01 20 chr18:23747794-23747814 6.72e-01 20 chrX:54070727-54070747 6.77e-01 20 chr5:77005988-77006008 3.62e-02 10_[+1(1.89e-05)]_2 chr6:157300202-157300222 7.09e-01 20 chr8:182436-182456 9.28e-01 20 chr17:34906525-34906545 1.98e-02 20 chr10:63747465-63747485 2.42e-03 3_[+2(8.48e-05)]_9 chr2:208202314-208202334 8.38e-01 20 chr14:53777375-53777395 2.04e-02 3_[+1(1.89e-05)]_9 chr15:70964571-70964591 2.54e-01 20 chr7:130507715-130507735 7.10e-01 20 chr19:50169254-50169274 6.52e-02 20 chr12:118483835-11848385 1.67e-02 7_[+1(1.89e-05)]_5 chr17:18684527-18684547 5.47e-02 8_[+5(7.17e-05)]_4 chr18:33907864-33907884 6.36e-05 1_[+4(3.65e-05)]_[+1(1.89e-05)]_3 chr2:238875538-238875558 5.30e-01 20 chrX:71792843-71792863 3.64e-01 20 chr7:2178147-2178167 8.97e-01 20 chr11:95968434-95968454 5.85e-04 [+1(6.28e-05)]_1_[+2(5.17e-05)]_3 chr15:57445570-57445590 8.45e-02 7_[+4(8.04e-05)]_5 chr7:66460778-66460798 9.50e-01 20 chr19:35168164-35168184 1.01e-01 20 chr16:56764001-56764021 1.93e-01 20 chr2:231478956-231478976 6.19e-02 5_[+1(4.04e-05)]_7 chr6:28220047-28220067 8.23e-02 20 chr2:135041877-135041897 1.86e-01 20 chr3:61774491-61774511 7.67e-05 1_[+1(4.04e-05)]_1_[+2(8.48e-05)]_2 chr3:121953153-121953173 2.76e-03 20 chr6:108616206-108616226 8.43e-01 20 chr19:17270597-17270617 6.00e-02 5_[+2(5.17e-05)]_7 chr7:135649703-135649723 5.85e-04 [+1(6.28e-05)]_1_[+2(5.17e-05)]_3 chr13:111205963-11120598 1.22e-02 6_[+2(8.48e-05)]_6 chr5:68855986-68856006 2.82e-02 5_[+5(2.41e-05)]_7 chr7:102988075-102988095 7.67e-01 20 chrX:19003092-19003112 9.97e-02 20 chr1:65389340-65389360 8.03e-01 20 chr11:57434783-57434803 6.80e-01 20 chrX:108780068-108780088 7.84e-01 20 chr19:50370627-50370647 7.64e-01 20 chr13:46038871-46038891 1.99e-03 [+1(1.89e-05)]_12 chr15:64388184-64388204 5.45e-02 4_[+5(4.53e-05)]_8 chr20:30865344-30865364 2.82e-01 20 chr11:64823160-64823180 2.23e-03 3_[+1(6.28e-05)]_9 chr5:118873470-118873490 1.24e-04 4_[+4(3.65e-05)]_[+1(4.04e-05)] chr5:14676035-14676055 8.71e-02 20 chr10:15001863-15001883 1.34e-02 1_[+4(2.03e-05)]_11 chr8:99257365-99257385 3.33e-01 20 chr5:145214954-145214974 4.20e-02 3_[+2(5.17e-05)]_9 chr17:37844328-37844348 9.91e-04 4_[+3(1.22e-05)]_8 chr13:77599885-77599905 7.57e-01 20 chr1:762792-762812 7.35e-01 20 chr18:72265013-72265033 2.37e-01 20 chr11:8553834-8553854 5.82e-01 20 chrX:119077749-119077769 4.18e-02 20 chr1:154946801-154946821 5.69e-01 20 chr2:233415343-233415363 2.19e-02 7_[+3(1.22e-05)]_5 chr15:57998886-57998906 3.73e-01 20 chr14:52881002-52881022 7.28e-01 20 chr17:15587625-15587645 8.44e-01 20 chr3:178866006-178866026 4.99e-01 20 chr14:35761592-35761612 4.73e-02 10_[+5(7.17e-05)]_2 chr3:186251941-186251961 4.53e-01 20 chr20:48532178-48532198 3.33e-01 20 chr22:27068789-27068809 1.25e-01 20 chr4:3668232-3668252 5.67e-01 20 chr6:11712414-11712434 1.32e-02 20 chr7:6865978-6865998 4.31e-01 20 chr17:76374687-76374707 9.30e-03 10_[+1(1.89e-05)]_2 chr4:41937144-41937164 2.51e-02 8_[+5(1.18e-05)]_4 chr14:69658231-69658251 6.30e-01 20 chr15:89984932-89984952 1.17e-02 [+2(2.75e-05)]_12 chr16:81832902-81832922 1.74e-02 20 chr19:58038718-58038738 2.45e-01 20 chr7:25157943-25157963 7.16e-02 20 chr11:77134855-77134875 9.59e-03 20 chr9:125675574-125675594 1.01e-01 3_[+3(6.79e-05)]_9 chr15:85259395-85259415 1.85e-01 20 chr2:27994606-27994626 8.83e-01 20 chr2:169215763-169215783 2.14e-02 12_[+1(6.28e-05)] chr2:9920752-9920772 4.05e-03 12_[+1(4.04e-05)] chr2:175260413-175260433 1.58e-03 5_[+3(4.37e-05)]_7 chr17:70462952-70462972 2.61e-02 9_[+1(4.04e-05)]_3 chr11:46958197-46958217 5.18e-01 20 chr12:123459246-12345926 8.77e-01 20 chr16:31085679-31085699 1.93e-02 12_[+3(5.64e-05)] chr2:118985874-118985894 9.02e-02 20 chrX:49091996-49092016 5.47e-01 20 chr6:99873214-99873234 2.27e-02 20 chr14:95964096-95964116 1.33e-01 20 chr19:3450886-3450906 4.06e-02 1_[+2(5.17e-05)]_11 chr22:41682546-41682566 4.40e-03 20 chr19:14416765-14416785 5.85e-04 3_[+1(6.28e-05)]_1_[+2(5.17e-05)] chr13:41837673-41837693 5.74e-01 20 chr15:40675125-40675145 2.41e-04 3_[+3(1.22e-05)]_9 chr5:135468575-135468595 2.34e-02 20 chr5:59110029-59110049 2.81e-04 1_[+1(6.28e-05)]_1_[+2(5.17e-05)]_2 chr10:103348010-10334803 1.03e-01 20 chr1:28415125-28415145 9.29e-02 20 chr13:100150852-10015087 5.84e-02 20 chr20:19997958-19997978 5.39e-01 20 chr10:32167583-32167603 7.06e-02 20 chr1:198610832-198610852 4.26e-01 20 chr2:242049381-242049401 4.34e-02 20 chr1:150039793-150039813 2.50e-03 5_[+3(2.19e-05)]_7 chr11:43702925-43702945 4.09e-01 20 chr19:37960255-37960275 7.91e-02 20 chr14:31248533-31248553 2.86e-03 7_[+4(6.09e-05)]_5 chr11:11473480-11473500 1.15e-03 11_[+1(6.28e-05)]_1 chrX:21857659-21857679 5.39e-01 20 chr1:225654967-225654987 6.84e-01 20 chr9:33076656-33076676 8.88e-01 20 chr2:118845952-118845972 1.28e-01 20 chr7:93812741-93812761 1.01e-01 20 chr20:47883970-47883990 2.81e-01 20 chr19:2331881-2331901 7.67e-05 2_[+1(4.04e-05)]_1_[+2(8.48e-05)]_1 chr18:33196969-33196989 3.01e-01 20 chr14:97918830-97918850 1.24e-04 1_[+4(3.65e-05)]_[+1(4.04e-05)]_3 chr12:92856558-92856578 3.32e-01 20 chr3:130465664-130465684 7.43e-02 8_[+5(9.87e-05)]_4 chr12:6833005-6833025 4.58e-01 20 chr1:168378217-168378237 4.96e-02 20 chr19:4182534-4182554 8.85e-01 20 chr3:15469044-15469064 1.45e-03 7_[+3(1.22e-05)]_5 chr3:13493386-13493406 6.13e-01 20 chr15:40331358-40331378 1.03e-02 9_[+3(1.22e-05)]_3 chr18:33552585-33552605 5.09e-01 20 chr19:8060402-8060422 6.61e-02 7_[+2(5.17e-05)]_5 chr6:7390023-7390043 9.66e-01 20 chr12:54582871-54582891 1.39e-02 11_[+3(3.20e-05)]_1 chrX:153236672-153236692 4.39e-01 20 chr19:9879424-9879444 6.23e-03 7_[+5(1.18e-05)]_5 chr15:68153142-68153162 1.22e-01 20 chr19:52643150-52643170 4.98e-01 20 chr20:46063462-46063482 3.25e-04 8_[+1(4.04e-05)]_4 chr22:31556084-31556104 2.14e-02 20 chr6:20703457-20703477 7.58e-01 20 chr17:61904541-61904561 4.88e-01 20 chr17:42264318-42264338 8.27e-02 20 chr5:171433853-171433873 9.89e-01 20 chr1:20834661-20834681 3.71e-02 10_[+3(2.19e-05)]_2 chr12:98746182-98746202 1.31e-01 20 chr3:69484633-69484653 9.40e-01 20 chr19:16607457-16607477 2.03e-01 20 chr10:26986449-26986469 7.08e-01 20 chr7:19753575-19753595 1.99e-02 20 chr3:88199015-88199035 6.96e-02 20 chr4:48197432-48197452 3.98e-02 20 chr10:75490273-75490293 9.14e-01 20 chr19:5903874-5903894 9.74e-01 20 chr8:110346281-110346301 3.39e-01 20 chr1:161123954-161123974 4.91e-01 20 chr9:130700134-130700154 4.99e-02 20 chr19:3435224-3435244 1.38e-01 20 chr7:97601686-97601706 6.38e-01 20 chr8:21867756-21867776 3.29e-01 20 chr5:88115569-88115589 2.07e-04 1_[+4(6.09e-05)]_11 chr12:6602552-6602572 6.87e-01 20 chr22:40742514-40742534 3.09e-01 20 chr13:26796498-26796518 7.44e-01 20 chr20:2489777-2489797 6.17e-01 20 chr16:1823161-1823181 8.25e-01 20 chr12:43639915-43639935 5.27e-01 20 chr5:271510-271530 6.45e-02 [+5(9.87e-05)]_12 chr1:235119954-235119974 3.99e-03 6_[+2(8.48e-05)]_6 chr19:50490589-50490609 5.66e-03 20 chr1:226927369-226927389 3.57e-03 20 chr6:31620209-31620229 8.54e-03 5_[+5(1.18e-05)]_7 chr21:33984910-33984930 7.42e-01 20 chr1:176176209-176176229 7.93e-01 20 chrX:103401523-103401543 9.36e-01 20 chr12:50794574-50794594 7.25e-01 20 chr19:2284276-2284296 1.54e-02 5_[+4(6.09e-05)]_7 chr16:11875151-11875171 1.91e-01 4_[+1(8.84e-05)]_8 chr6:159420868-159420888 3.31e-01 20 chr17:37793573-37793593 1.78e-01 20 chr11:68034578-68034598 5.84e-01 20 chr10:124713745-12471376 2.07e-02 20 chr3:101280663-101280683 8.55e-02 [+3(3.20e-05)]_12 chr5:114598585-114598605 5.90e-01 20 chr3:45430081-45430101 8.49e-01 20 chr12:9102574-9102594 8.10e-01 20 chr11:118122918-11812293 4.70e-01 20 chr19:56826240-56826260 9.30e-01 20 chr2:178483520-178483540 5.69e-02 20 chr9:97658150-97658170 1.57e-02 3_[+2(5.17e-05)]_9 chr7:44084184-44084204 6.65e-01 20 chr12:6449267-6449287 4.08e-01 20 chr7:99097924-99097944 2.50e-01 20 chr12:40015648-40015668 3.82e-02 20 chr6:71562533-71562553 7.73e-02 6_[+2(5.17e-05)]_6 chr19:507400-507420 3.99e-01 20 chr4:119606538-119606558 2.17e-02 4_[+3(1.22e-05)]_8 chr14:45604975-45604995 3.22e-01 20 chr11:31391374-31391394 1.18e-03 2_[+5(2.41e-05)]_10 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n09.farnam.hpc.yale.internal ********************************************************************************