******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/ZBED1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr18:67625875-67625895 1.0000 20 chr2:106425720-106425740 1.0000 20 chr10:82895762-82895782 1.0000 20 chr4:100870685-100870705 1.0000 20 chr7:2249569-2249589 1.0000 20 chr4:67206192-67206212 1.0000 20 chr17:2527863-2527883 1.0000 20 chr20:19918459-19918479 1.0000 20 chr4:67206393-67206413 1.0000 20 chr8:145129337-145129357 1.0000 20 chr19:53988842-53988862 1.0000 20 chr1:153896234-153896254 1.0000 20 chr19:40029920-40029940 1.0000 20 chr18:23669737-23669757 1.0000 20 chr4:99367984-99368004 1.0000 20 chr19:54641641-54641661 1.0000 20 chr19:11435074-11435094 1.0000 20 chr1:36023851-36023871 1.0000 20 chr5:16785049-16785069 1.0000 20 chr14:22566901-22566921 1.0000 20 chr3:112100803-112100823 1.0000 20 chr18:56706166-56706186 1.0000 20 chr15:43213607-43213627 1.0000 20 chr18:55876076-55876096 1.0000 20 chr16:4357914-4357934 1.0000 20 chr15:43213407-43213427 1.0000 20 chr3:151986737-151986757 1.0000 20 chr12:6376709-6376729 1.0000 20 chr1:36023626-36023646 1.0000 20 chr12:26866955-26866975 1.0000 20 chr1:54842501-54842521 1.0000 20 chr19:36630592-36630612 1.0000 20 chr2:121832834-121832854 1.0000 20 chr6:129927949-129927969 1.0000 20 chr19:50836758-50836778 1.0000 20 chr1:205180507-205180527 1.0000 20 chrX:16789838-16789858 1.0000 20 chr4:84953775-84953795 1.0000 20 chr17:62971636-62971656 1.0000 20 chr5:149380499-149380519 1.0000 20 chr1:184723547-184723567 1.0000 20 chr6:156973570-156973590 1.0000 20 chrX:11758058-11758078 1.0000 20 chr11:118743306-11874332 1.0000 20 chr15:45019344-45019364 1.0000 20 chr12:57916321-57916341 1.0000 20 chr16:46865325-46865345 1.0000 20 chr7:5565134-5565154 1.0000 20 chr16:14724294-14724314 1.0000 20 chr2:48010353-48010373 1.0000 20 chr19:54641858-54641878 1.0000 20 chr21:47673616-47673636 1.0000 20 chr19:18451490-18451510 1.0000 20 chr12:112546695-11254671 1.0000 20 chr3:4345345-4345365 1.0000 20 chr18:67704110-67704130 1.0000 20 chr22:23249447-23249467 1.0000 20 chr6:27835122-27835142 1.0000 20 chr2:38355993-38356013 1.0000 20 chr1:206959658-206959678 1.0000 20 chr15:60968157-60968177 1.0000 20 chr5:6273383-6273403 1.0000 20 chr2:208394377-208394397 1.0000 20 chr1:207618047-207618067 1.0000 20 chr6:26124070-26124090 1.0000 20 chr10:104154293-10415431 1.0000 20 chr7:50333570-50333590 1.0000 20 chr11:9230715-9230735 1.0000 20 chr2:213880305-213880325 1.0000 20 chr17:39834951-39834971 1.0000 20 chr3:186508136-186508156 1.0000 20 chr7:27824200-27824220 1.0000 20 chr21:26948687-26948707 1.0000 20 chr19:7787463-7787483 1.0000 20 chr15:29601507-29601527 1.0000 20 chr12:104301695-10430171 1.0000 20 chr1:79506537-79506557 1.0000 20 chr1:153896019-153896039 1.0000 20 chr6:27835323-27835343 1.0000 20 chr2:68666350-68666370 1.0000 20 chr4:36334098-36334118 1.0000 20 chr11:65899614-65899634 1.0000 20 chr16:69598291-69598311 1.0000 20 chr6:27841176-27841196 1.0000 20 chr2:68666149-68666169 1.0000 20 chr3:48956181-48956201 1.0000 20 chr3:46106973-46106993 1.0000 20 chr6:26043800-26043820 1.0000 20 chr4:114791275-114791295 1.0000 20 chr7:5565393-5565413 1.0000 20 chr12:6641949-6641969 1.0000 20 chr6:26240846-26240866 1.0000 20 chr18:57627733-57627753 1.0000 20 chr4:80980036-80980056 1.0000 20 chr15:34415263-34415283 1.0000 20 chr1:147736084-147736104 1.0000 20 chr6:27858324-27858344 1.0000 20 chr14:106692322-10669234 1.0000 20 chr20:30467685-30467705 1.0000 20 chr2:25641970-25641990 1.0000 20 chr16:16101825-16101845 1.0000 20 chrX:53711199-53711219 1.0000 20 chr6:27806085-27806105 1.0000 20 chr5:68728480-68728500 1.0000 20 chr1:228327785-228327805 1.0000 20 chr1:150207008-150207028 1.0000 20 chr18:59854241-59854261 1.0000 20 chr19:50836970-50836990 1.0000 20 chr1:147735879-147735899 1.0000 20 chr21:26950960-26950980 1.0000 20 chr7:139026224-139026244 1.0000 20 chr6:64283625-64283645 1.0000 20 chr1:17222705-17222725 1.0000 20 chr19:40931891-40931911 1.0000 20 chr16:23935679-23935699 1.0000 20 chr17:47817117-47817137 1.0000 20 chr2:99491943-99491963 1.0000 20 chr5:96038773-96038793 1.0000 20 chr6:27833130-27833150 1.0000 20 chr5:176858662-176858682 1.0000 20 chr5:76675743-76675763 1.0000 20 chr16:2011190-2011210 1.0000 20 chr10:96366925-96366945 1.0000 20 chr14:77838984-77839004 1.0000 20 chr11:62432639-62432659 1.0000 20 chr1:154909781-154909801 1.0000 20 chr8:8412886-8412906 1.0000 20 chr5:171742903-171742923 1.0000 20 chr22:23244119-23244139 1.0000 20 chr6:26250705-26250725 1.0000 20 chr1:156308395-156308415 1.0000 20 chr6:26199104-26199124 1.0000 20 chr2:37862810-37862830 1.0000 20 chr19:40932090-40932110 1.0000 20 chr12:57916117-57916137 1.0000 20 chr11:121440787-12144080 1.0000 20 chr2:88315885-88315905 1.0000 20 chr6:27833351-27833371 1.0000 20 chr14:23120372-23120392 1.0000 20 chr1:210547687-210547707 1.0000 20 chr20:52268944-52268964 1.0000 20 chr17:2304856-2304876 1.0000 20 chr3:105086885-105086905 1.0000 20 chr6:27100158-27100178 1.0000 20 chr17:33288418-33288438 1.0000 20 chr6:80045084-80045104 1.0000 20 chr17:18967131-18967151 1.0000 20 chr5:16785267-16785287 1.0000 20 chr12:6648004-6648024 1.0000 20 chr14:65769707-65769727 1.0000 20 chr1:100650244-100650264 1.0000 20 chr17:36857807-36857827 1.0000 20 chr14:51135345-51135365 1.0000 20 chr2:37798153-37798173 1.0000 20 chr8:101962743-101962763 1.0000 20 chr2:232087132-232087152 1.0000 20 chr19:2055513-2055533 1.0000 20 chr19:49996128-49996148 1.0000 20 chr5:142642177-142642197 1.0000 20 chrX:12993366-12993386 1.0000 20 chr12:49555423-49555443 1.0000 20 chr6:26251978-26251998 1.0000 20 chr6:27778158-27778178 1.0000 20 chr6:30693798-30693818 1.0000 20 chrX:1599969-1599989 1.0000 20 chr17:57920357-57920377 1.0000 20 chr12:25104896-25104916 1.0000 20 chr15:45011920-45011940 1.0000 20 chr10:13785591-13785611 1.0000 20 chr1:213153327-213153347 1.0000 20 chr3:111834221-111834241 1.0000 20 chr8:33371109-33371129 1.0000 20 chr1:113162873-113162893 1.0000 20 chrX:12968119-12968139 1.0000 20 chr1:147994163-147994183 1.0000 20 chr2:231815388-231815408 1.0000 20 chr2:197242325-197242345 1.0000 20 chr6:391803-391823 1.0000 20 chr10:94004661-94004681 1.0000 20 chr12:112546899-11254691 1.0000 20 chr6:27798774-27798794 1.0000 20 chr9:19926100-19926120 1.0000 20 chr4:915742-915762 1.0000 20 chr5:149380701-149380721 1.0000 20 chr3:189025878-189025898 1.0000 20 chr6:32413277-32413297 1.0000 20 chr18:42489581-42489601 1.0000 20 chr6:26045818-26045838 1.0000 20 chr9:119714276-119714296 1.0000 20 chr16:68298316-68298336 1.0000 20 chr16:56905252-56905272 1.0000 20 chr11:94005274-94005294 1.0000 20 chr2:122494679-122494699 1.0000 20 chrX:122558567-122558587 1.0000 20 chr21:35320109-35320129 1.0000 20 chrX:11758260-11758280 1.0000 20 chr17:56407338-56407358 1.0000 20 chr1:46806462-46806482 1.0000 20 chr21:38905626-38905646 1.0000 20 chr6:12608733-12608753 1.0000 20 chr14:91840012-91840032 1.0000 20 chr2:161934241-161934261 1.0000 20 chr16:57411460-57411480 1.0000 20 chr21:26934500-26934520 1.0000 20 chr1:78148369-78148389 1.0000 20 chr13:50798789-50798809 1.0000 20 chr17:7482785-7482805 1.0000 20 chr1:67637780-67637800 1.0000 20 chr2:197313565-197313585 1.0000 20 chr12:4616273-4616293 1.0000 20 chr6:6587542-6587562 1.0000 20 chr11:90434408-90434428 1.0000 20 chr20:40091247-40091267 1.0000 20 chr11:18127556-18127576 1.0000 20 chr1:147806740-147806760 1.0000 20 chr5:142593863-142593883 1.0000 20 chr3:113250987-113251007 1.0000 20 chr5:142594141-142594161 1.0000 20 chr22:44947258-44947278 1.0000 20 chr6:26158733-26158753 1.0000 20 chr5:1495409-1495429 1.0000 20 chr17:62971837-62971857 1.0000 20 chr8:143645314-143645334 1.0000 20 chr15:91209094-91209114 1.0000 20 chr21:34814575-34814595 1.0000 20 chrX:153629624-153629644 1.0000 20 chr8:135563865-135563885 1.0000 20 chr12:111074545-11107456 1.0000 20 chr7:2913925-2913945 1.0000 20 chr17:18965568-18965588 1.0000 20 chr1:146556193-146556213 1.0000 20 chr6:143164138-143164158 1.0000 20 chr1:160423477-160423497 1.0000 20 chr6:138230060-138230080 1.0000 20 chr6:132009588-132009608 1.0000 20 chr22:23244322-23244342 1.0000 20 chr17:57078974-57078994 1.0000 20 chr14:65769908-65769928 1.0000 20 chr1:12495920-12495940 1.0000 20 chr9:134882594-134882614 1.0000 20 chr5:159891621-159891641 1.0000 20 chr6:26020864-26020884 1.0000 20 chr6:26271429-26271449 1.0000 20 chr1:210547482-210547502 1.0000 20 chr6:27100459-27100479 1.0000 20 chrX:109018179-109018199 1.0000 20 chr14:102343003-10234302 1.0000 20 chr13:95892420-95892440 1.0000 20 chr6:11374635-11374655 1.0000 20 chr1:213153121-213153141 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_ZBED1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/ZBED1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.249 C 0.258 G 0.254 T 0.239 Background letter frequencies (from file dataset with add-one prior applied): A 0.249 C 0.258 G 0.254 T 0.239 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TGTCRYGA MEME-1 width = 8 sites = 24 llr = 192 E-value = 1.0e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTCRYGA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 12::3::a pos.-specific C :::a:5:: probability G :8::619: matrix T 9:a::41: bits 2.1 * * 1.9 ** * 1.7 ** * 1.4 * ** ** Relative 1.2 **** ** Entropy 1.0 **** ** (11.6 bits) 0.8 ***** ** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGTCGCGA consensus A AT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTCRYGA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr20:30467685-30467705 2 1.55e-05 A TGTCGCGA CCGAAGGTAG chr10:104154293-10415431 2 1.55e-05 G TGTCGCGA CCGGTCCCAG chr5:149380499-149380519 13 1.55e-05 CGAGAGGGGC TGTCGCGA chr19:36630592-36630612 5 1.55e-05 TGTT TGTCGCGA CAACACCT chr12:111074545-11107456 7 2.99e-05 CACCAC TGTCGTGA CCAGCA chr18:57627733-57627753 13 2.99e-05 ggttccttca tgtcgtga chr7:27824200-27824220 4 2.99e-05 ATA TGTCGTGA CTAATTTTT chrX:11758058-11758078 3 2.99e-05 ag tgtcgtga cagcatcagt chr2:106425720-106425740 4 2.99e-05 ATA TGTCGTGA CACATATGT chr4:84953775-84953795 8 4.51e-05 TAGCATC TGTCACGA TATTC chr17:57078974-57078994 1 5.92e-05 . TGTCATGA CCATGAAGGA chr19:53988842-53988862 5 5.92e-05 tgta tgtcatga tatatatc chr6:27833130-27833150 4 8.97e-05 TCA TGTCGGGA CGCGGCAAG chr1:206959658-206959678 11 1.48e-04 CGGCCAGTAC TATCACGA CA chr17:47817117-47817137 4 1.76e-04 CCA TATCATGA CAGGCCATG chr4:67206192-67206212 11 1.76e-04 atatgtcata tatcatga ta chr11:62432639-62432659 3 1.92e-04 AT AGTCGCGA TTCCACTCCA chr2:161934241-161934261 1 2.06e-04 . tgtcacta tggaaggaaa chr3:189025878-189025898 11 2.36e-04 GGTCATGGAA TGTCTCGA TA chr14:91840012-91840032 5 2.64e-04 GGCA TATCGGGA CACAGTTG chr10:82895762-82895782 7 2.93e-04 AGCAGC AGTCACGA CAAGCA chr19:50836758-50836778 4 3.10e-04 TGC CGTCGCGA CCTGTCGCC chr4:915742-915762 8 3.84e-04 aaggagg tatcgcta cacat chr2:48010353-48010373 13 3.84e-04 CCTTGCCGGC TGTCGGTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTCRYGA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr20:30467685-30467705 1.6e-05 1_[+1]_11 chr10:104154293-10415431 1.6e-05 1_[+1]_11 chr5:149380499-149380519 1.6e-05 12_[+1] chr19:36630592-36630612 1.6e-05 4_[+1]_8 chr12:111074545-11107456 3e-05 6_[+1]_6 chr18:57627733-57627753 3e-05 12_[+1] chr7:27824200-27824220 3e-05 3_[+1]_9 chrX:11758058-11758078 3e-05 2_[+1]_10 chr2:106425720-106425740 3e-05 3_[+1]_9 chr4:84953775-84953795 4.5e-05 7_[+1]_5 chr17:57078974-57078994 5.9e-05 [+1]_12 chr19:53988842-53988862 5.9e-05 4_[+1]_8 chr6:27833130-27833150 9e-05 3_[+1]_9 chr1:206959658-206959678 0.00015 10_[+1]_2 chr17:47817117-47817137 0.00018 3_[+1]_9 chr4:67206192-67206212 0.00018 10_[+1]_2 chr11:62432639-62432659 0.00019 2_[+1]_10 chr2:161934241-161934261 0.00021 [+1]_12 chr3:189025878-189025898 0.00024 10_[+1]_2 chr14:91840012-91840032 0.00026 4_[+1]_8 chr10:82895762-82895782 0.00029 6_[+1]_6 chr19:50836758-50836778 0.00031 3_[+1]_9 chr4:915742-915762 0.00038 7_[+1]_5 chr2:48010353-48010373 0.00038 12_[+1] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTCRYGA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTCRYGA width=8 seqs=24 chr20:30467685-30467705 ( 2) TGTCGCGA 1 chr10:104154293-10415431 ( 2) TGTCGCGA 1 chr5:149380499-149380519 ( 13) TGTCGCGA 1 chr19:36630592-36630612 ( 5) TGTCGCGA 1 chr12:111074545-11107456 ( 7) TGTCGTGA 1 chr18:57627733-57627753 ( 13) TGTCGTGA 1 chr7:27824200-27824220 ( 4) TGTCGTGA 1 chrX:11758058-11758078 ( 3) TGTCGTGA 1 chr2:106425720-106425740 ( 4) TGTCGTGA 1 chr4:84953775-84953795 ( 8) TGTCACGA 1 chr17:57078974-57078994 ( 1) TGTCATGA 1 chr19:53988842-53988862 ( 5) TGTCATGA 1 chr6:27833130-27833150 ( 4) TGTCGGGA 1 chr1:206959658-206959678 ( 11) TATCACGA 1 chr17:47817117-47817137 ( 4) TATCATGA 1 chr4:67206192-67206212 ( 11) TATCATGA 1 chr11:62432639-62432659 ( 3) AGTCGCGA 1 chr2:161934241-161934261 ( 1) TGTCACTA 1 chr3:189025878-189025898 ( 11) TGTCTCGA 1 chr14:91840012-91840032 ( 5) TATCGGGA 1 chr10:82895762-82895782 ( 7) AGTCACGA 1 chr19:50836758-50836778 ( 4) CGTCGCGA 1 chr4:915742-915762 ( 8) TATCGCTA 1 chr2:48010353-48010373 ( 13) TGTCGGTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTCRYGA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.66267 E= 1.0e-008 -158 -263 -1123 187 -26 -1123 164 -1123 -1123 -1123 -1123 207 -1123 195 -1123 -1123 42 -1123 130 -251 -1123 95 -102 65 -1123 -1123 178 -93 201 -1123 -1123 -1123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTCRYGA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 1.0e-008 0.083333 0.041667 0.000000 0.875000 0.208333 0.000000 0.791667 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.000000 0.625000 0.041667 0.000000 0.500000 0.125000 0.375000 0.000000 0.000000 0.875000 0.125000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTCRYGA MEME-1 regular expression -------------------------------------------------------------------------------- T[GA]TC[GA][CT]GA -------------------------------------------------------------------------------- Time 2.12 secs. ******************************************************************************** ******************************************************************************** MOTIF TATTGTTA MEME-2 width = 8 sites = 2 llr = 23 E-value = 3.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TATTGTTA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :a:::::a pos.-specific C :::::::: probability G ::::a::: matrix T a:aa:aa: bits 2.1 ******** 1.9 ******** 1.7 ******** 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (16.3 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TATTGTTA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATTGTTA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr9:134882594-134882614 3 1.23e-05 CT TATTGTTA CTCAAACCTG chr15:29601507-29601527 12 1.23e-05 CATGTTGTAG TATTGTTA C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATTGTTA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:134882594-134882614 1.2e-05 2_[+2]_10 chr15:29601507-29601527 1.2e-05 11_[+2]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATTGTTA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TATTGTTA width=8 seqs=2 chr9:134882594-134882614 ( 3) TATTGTTA 1 chr15:29601507-29601527 ( 12) TATTGTTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATTGTTA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.6653 E= 3.3e+003 -765 -765 -765 206 200 -765 -765 -765 -765 -765 -765 206 -765 -765 -765 206 -765 -765 197 -765 -765 -765 -765 206 -765 -765 -765 206 200 -765 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATTGTTA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.3e+003 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATTGTTA MEME-2 regular expression -------------------------------------------------------------------------------- TATTGTTA -------------------------------------------------------------------------------- Time 5.27 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTCTGGM MEME-3 width = 8 sites = 7 llr = 65 E-value = 3.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTCTGGM MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::4 pos.-specific C 1::a:1:6 probability G ::1::9a: matrix T 9a9:a::: bits 2.1 * * * 1.9 * ** * 1.7 * ** * 1.4 ******* Relative 1.2 ******* Entropy 1.0 ******** (13.4 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTCTGGC consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCTGGM MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:231815388-231815408 3 1.40e-05 ag tttctggc tcggaacccc chr11:90434408-90434428 8 2.75e-05 TGACTCA TTTCTGGA TGGTG chr5:142642177-142642197 12 2.75e-05 aaattgttta tttctgga a chr2:88315885-88315905 1 2.75e-05 . tttctgga agtactgcaa chr17:18967131-18967151 9 4.18e-05 CGAAAACC TTTCTCGC TACA chr22:44947258-44947278 7 7.18e-05 atcccc cttctggc tgagtc chr1:153896234-153896254 6 7.18e-05 TCCTT TTGCTGGC CTCCCTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCTGGM MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:231815388-231815408 1.4e-05 2_[+3]_10 chr11:90434408-90434428 2.8e-05 7_[+3]_5 chr5:142642177-142642197 2.8e-05 11_[+3]_1 chr2:88315885-88315905 2.8e-05 [+3]_12 chr17:18967131-18967151 4.2e-05 8_[+3]_4 chr22:44947258-44947278 7.2e-05 6_[+3]_6 chr1:153896234-153896254 7.2e-05 5_[+3]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCTGGM MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTCTGGM width=8 seqs=7 chr2:231815388-231815408 ( 3) TTTCTGGC 1 chr11:90434408-90434428 ( 8) TTTCTGGA 1 chr5:142642177-142642197 ( 12) TTTCTGGA 1 chr2:88315885-88315905 ( 1) TTTCTGGA 1 chr17:18967131-18967151 ( 9) TTTCTCGC 1 chr22:44947258-44947278 ( 7) CTTCTGGC 1 chr1:153896234-153896254 ( 6) TTGCTGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCTGGM MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.69928 E= 3.6e+003 -945 -85 -945 184 -945 -945 -945 207 -945 -945 -83 184 -945 195 -945 -945 -945 -945 -945 207 -945 -85 175 -945 -945 -945 197 -945 78 114 -945 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCTGGM MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 3.6e+003 0.000000 0.142857 0.000000 0.857143 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.142857 0.857143 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.142857 0.857143 0.000000 0.000000 0.000000 1.000000 0.000000 0.428571 0.571429 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCTGGM MEME-3 regular expression -------------------------------------------------------------------------------- TTTCTGG[CA] -------------------------------------------------------------------------------- Time 7.88 secs. ******************************************************************************** ******************************************************************************** MOTIF TKTCATTT MEME-4 width = 8 sites = 2 llr = 21 E-value = 9.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TKTCATTT MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::a::: pos.-specific C :::a:::: probability G :5:::::: matrix T a5a::aaa bits 2.1 * * **** 1.9 * ****** 1.7 * ****** 1.4 * ****** Relative 1.2 * ****** Entropy 1.0 ******** (15.3 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGTCATTT consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTCATTT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:38355993-38356013 3 1.20e-05 CC TTTCATTT CCTCATTTTG chr1:79506537-79506557 2 2.47e-05 C TGTCATTT GCAGTCCCTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTCATTT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:38355993-38356013 1.2e-05 2_[+4]_10 chr1:79506537-79506557 2.5e-05 1_[+4]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTCATTT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TKTCATTT width=8 seqs=2 chr2:38355993-38356013 ( 3) TTTCATTT 1 chr1:79506537-79506557 ( 2) TGTCATTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTCATTT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.6653 E= 9.6e+003 -765 -765 -765 206 -765 -765 97 106 -765 -765 -765 206 -765 195 -765 -765 200 -765 -765 -765 -765 -765 -765 206 -765 -765 -765 206 -765 -765 -765 206 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTCATTT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 9.6e+003 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTCATTT MEME-4 regular expression -------------------------------------------------------------------------------- T[GT]TCATTT -------------------------------------------------------------------------------- Time 9.31 secs. ******************************************************************************** ******************************************************************************** MOTIF TATATATC MEME-5 width = 8 sites = 2 llr = 23 E-value = 6.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TATATATC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :a:a:a:: pos.-specific C :::::::a probability G :::::::: matrix T a:a:a:a: bits 2.1 ******* 1.9 ******** 1.7 ******** 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (16.2 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TATATATC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATATATC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:53988842-53988862 13 1.30e-05 tatgtcatga tatatatc chr4:67206393-67206413 7 1.30e-05 atatca tatatatc atgtat -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATATATC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:53988842-53988862 1.3e-05 12_[+5] chr4:67206393-67206413 1.3e-05 6_[+5]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATATATC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TATATATC width=8 seqs=2 chr19:53988842-53988862 ( 13) TATATATC 1 chr4:67206393-67206413 ( 7) TATATATC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATATATC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.6653 E= 6.2e+003 -765 -765 -765 206 200 -765 -765 -765 -765 -765 -765 206 200 -765 -765 -765 -765 -765 -765 206 200 -765 -765 -765 -765 -765 -765 206 -765 195 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATATATC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 6.2e+003 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATATATC MEME-5 regular expression -------------------------------------------------------------------------------- TATATATC -------------------------------------------------------------------------------- Time 10.02 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr18:67625875-67625895 7.94e-01 20 chr2:106425720-106425740 5.76e-03 3_[+1(2.99e-05)]_9 chr10:82895762-82895782 2.75e-01 20 chr4:100870685-100870705 8.42e-01 20 chr7:2249569-2249589 2.60e-01 20 chr4:67206192-67206212 5.28e-05 20 chr17:2527863-2527883 7.91e-02 20 chr20:19918459-19918479 8.94e-01 20 chr4:67206393-67206413 2.68e-04 6_[+5(1.30e-05)]_6 chr8:145129337-145129357 5.17e-01 20 chr19:53988842-53988862 9.75e-06 4_[+1(5.92e-05)]_[+5(1.30e-05)] chr1:153896234-153896254 3.05e-02 5_[+3(7.18e-05)]_7 chr19:40029920-40029940 1.22e-01 20 chr18:23669737-23669757 7.11e-01 20 chr4:99367984-99368004 9.37e-01 20 chr19:54641641-54641661 9.56e-01 20 chr19:11435074-11435094 9.78e-01 20 chr1:36023851-36023871 2.24e-01 20 chr5:16785049-16785069 9.78e-01 20 chr14:22566901-22566921 4.39e-02 20 chr3:112100803-112100823 6.22e-01 20 chr18:56706166-56706186 7.85e-02 20 chr15:43213607-43213627 1.49e-01 20 chr18:55876076-55876096 9.94e-01 20 chr16:4357914-4357934 4.74e-01 20 chr15:43213407-43213427 8.93e-01 20 chr3:151986737-151986757 4.56e-01 20 chr12:6376709-6376729 8.96e-01 20 chr1:36023626-36023646 7.68e-02 20 chr12:26866955-26866975 4.88e-01 20 chr1:54842501-54842521 9.05e-01 20 chr19:36630592-36630612 2.06e-04 4_[+1(1.55e-05)]_8 chr2:121832834-121832854 6.98e-01 20 chr6:129927949-129927969 2.14e-01 20 chr19:50836758-50836778 1.40e-01 20 chr1:205180507-205180527 1.86e-01 20 chrX:16789838-16789858 4.27e-02 20 chr4:84953775-84953795 3.20e-03 7_[+1(4.51e-05)]_5 chr17:62971636-62971656 9.95e-01 20 chr5:149380499-149380519 2.08e-02 12_[+1(1.55e-05)] chr1:184723547-184723567 7.38e-01 20 chr6:156973570-156973590 5.45e-02 20 chrX:11758058-11758078 1.43e-02 2_[+1(2.99e-05)]_10 chr11:118743306-11874332 9.85e-01 20 chr15:45019344-45019364 9.97e-01 20 chr12:57916321-57916341 9.00e-01 20 chr16:46865325-46865345 9.99e-01 20 chr7:5565134-5565154 8.92e-01 20 chr16:14724294-14724314 9.92e-01 20 chr2:48010353-48010373 8.61e-03 20 chr19:54641858-54641878 9.15e-01 20 chr21:47673616-47673636 9.38e-01 20 chr19:18451490-18451510 1.00e+00 20 chr12:112546695-11254671 9.88e-01 20 chr3:4345345-4345365 9.46e-01 20 chr18:67704110-67704130 9.97e-01 20 chr22:23249447-23249467 7.38e-01 20 chr6:27835122-27835142 7.95e-01 20 chr2:38355993-38356013 2.99e-03 2_[+4(1.20e-05)]_10 chr1:206959658-206959678 2.70e-02 20 chr15:60968157-60968177 1.13e-01 20 chr5:6273383-6273403 1.00e+00 20 chr2:208394377-208394397 9.99e-01 20 chr1:207618047-207618067 5.39e-01 20 chr6:26124070-26124090 3.58e-01 20 chr10:104154293-10415431 2.14e-02 1_[+1(1.55e-05)]_11 chr7:50333570-50333590 3.18e-01 20 chr11:9230715-9230735 1.87e-01 20 chr2:213880305-213880325 8.51e-01 20 chr17:39834951-39834971 8.15e-01 20 chr3:186508136-186508156 9.47e-01 20 chr7:27824200-27824220 2.08e-03 3_[+1(2.99e-05)]_9 chr21:26948687-26948707 6.35e-01 20 chr19:7787463-7787483 9.54e-01 20 chr15:29601507-29601527 2.22e-03 11_[+2(1.23e-05)]_1 chr12:104301695-10430171 1.31e-01 20 chr1:79506537-79506557 2.19e-03 1_[+4(2.47e-05)]_11 chr1:153896019-153896039 9.92e-02 20 chr6:27835323-27835343 8.20e-01 20 chr2:68666350-68666370 1.00e+00 20 chr4:36334098-36334118 2.67e-01 20 chr11:65899614-65899634 3.74e-01 20 chr16:69598291-69598311 5.48e-01 20 chr6:27841176-27841196 8.30e-01 20 chr2:68666149-68666169 9.80e-01 20 chr3:48956181-48956201 8.42e-01 20 chr3:46106973-46106993 9.57e-01 20 chr6:26043800-26043820 6.50e-01 20 chr4:114791275-114791295 3.41e-01 20 chr7:5565393-5565413 2.88e-01 20 chr12:6641949-6641969 5.81e-01 20 chr6:26240846-26240866 8.44e-01 20 chr18:57627733-57627753 9.97e-04 12_[+1(2.99e-05)] chr4:80980036-80980056 1.64e-01 20 chr15:34415263-34415283 1.27e-01 20 chr1:147736084-147736104 9.73e-01 20 chr6:27858324-27858344 3.18e-01 20 chr14:106692322-10669234 9.96e-01 20 chr20:30467685-30467705 2.14e-02 1_[+1(1.55e-05)]_11 chr2:25641970-25641990 1.46e-02 20 chr16:16101825-16101845 8.85e-01 20 chrX:53711199-53711219 9.87e-01 20 chr6:27806085-27806105 6.35e-01 20 chr5:68728480-68728500 7.50e-01 20 chr1:228327785-228327805 6.55e-01 20 chr1:150207008-150207028 9.72e-01 20 chr18:59854241-59854261 9.87e-01 20 chr19:50836970-50836990 5.20e-01 20 chr1:147735879-147735899 9.68e-01 20 chr21:26950960-26950980 9.89e-01 20 chr7:139026224-139026244 3.07e-02 20 chr6:64283625-64283645 4.44e-03 20 chr1:17222705-17222725 3.70e-01 20 chr19:40931891-40931911 3.29e-01 20 chr16:23935679-23935699 1.54e-01 20 chr17:47817117-47817137 1.84e-02 20 chr2:99491943-99491963 9.90e-01 20 chr5:96038773-96038793 9.22e-01 20 chr6:27833130-27833150 3.38e-02 3_[+1(8.97e-05)]_9 chr5:176858662-176858682 9.95e-01 20 chr5:76675743-76675763 7.28e-01 20 chr16:2011190-2011210 8.78e-01 20 chr10:96366925-96366945 3.92e-01 20 chr14:77838984-77839004 1.02e-01 20 chr11:62432639-62432659 1.19e-01 20 chr1:154909781-154909801 8.48e-01 20 chr8:8412886-8412906 9.99e-01 20 chr5:171742903-171742923 6.80e-01 20 chr22:23244119-23244139 9.04e-01 20 chr6:26250705-26250725 9.42e-01 20 chr1:156308395-156308415 3.49e-01 20 chr6:26199104-26199124 6.83e-02 20 chr2:37862810-37862830 9.88e-01 20 chr19:40932090-40932110 5.96e-01 20 chr12:57916117-57916137 7.75e-01 20 chr11:121440787-12144080 1.00e+00 20 chr2:88315885-88315905 7.55e-03 [+3(2.75e-05)]_12 chr6:27833351-27833371 9.97e-01 20 chr14:23120372-23120392 7.02e-01 20 chr1:210547687-210547707 6.94e-01 20 chr20:52268944-52268964 8.30e-01 20 chr17:2304856-2304876 9.99e-01 20 chr3:105086885-105086905 9.85e-01 20 chr6:27100158-27100178 2.97e-01 20 chr17:33288418-33288438 9.99e-01 20 chr6:80045084-80045104 3.37e-01 20 chr17:18967131-18967151 2.40e-03 8_[+3(4.18e-05)]_4 chr5:16785267-16785287 4.75e-01 20 chr12:6648004-6648024 6.96e-01 20 chr14:65769707-65769727 1.62e-02 20 chr1:100650244-100650264 7.76e-02 20 chr17:36857807-36857827 9.82e-01 20 chr14:51135345-51135365 5.59e-01 20 chr2:37798153-37798173 3.18e-02 20 chr8:101962743-101962763 8.98e-01 20 chr2:232087132-232087152 9.18e-01 20 chr19:2055513-2055533 4.51e-01 20 chr19:49996128-49996148 9.50e-01 20 chr5:142642177-142642197 4.95e-06 11_[+3(2.75e-05)]_1 chrX:12993366-12993386 7.57e-01 20 chr12:49555423-49555443 3.69e-01 20 chr6:26251978-26251998 9.95e-01 20 chr6:27778158-27778178 5.60e-01 20 chr6:30693798-30693818 8.10e-01 20 chrX:1599969-1599989 9.30e-01 20 chr17:57920357-57920377 9.98e-01 20 chr12:25104896-25104916 9.03e-01 20 chr15:45011920-45011940 8.60e-01 20 chr10:13785591-13785611 3.22e-01 20 chr1:213153327-213153347 9.41e-01 20 chr3:111834221-111834241 9.66e-01 20 chr8:33371109-33371129 1.79e-01 20 chr1:113162873-113162893 1.00e+00 20 chrX:12968119-12968139 9.93e-01 20 chr1:147994163-147994183 5.52e-02 20 chr2:231815388-231815408 1.44e-02 2_[+3(1.40e-05)]_10 chr2:197242325-197242345 8.65e-01 20 chr6:391803-391823 9.30e-01 20 chr10:94004661-94004681 3.45e-01 20 chr12:112546899-11254691 4.27e-01 20 chr6:27798774-27798794 9.99e-01 20 chr9:19926100-19926120 9.98e-01 20 chr4:915742-915762 1.67e-02 20 chr5:149380701-149380721 7.09e-01 20 chr3:189025878-189025898 2.29e-03 20 chr6:32413277-32413297 1.95e-01 20 chr18:42489581-42489601 3.81e-02 20 chr6:26045818-26045838 7.47e-01 20 chr9:119714276-119714296 3.71e-01 20 chr16:68298316-68298336 1.00e+00 20 chr16:56905252-56905272 2.27e-05 20 chr11:94005274-94005294 6.95e-01 20 chr2:122494679-122494699 9.60e-01 20 chrX:122558567-122558587 8.37e-01 20 chr21:35320109-35320129 9.96e-01 20 chrX:11758260-11758280 2.06e-01 20 chr17:56407338-56407358 4.88e-02 20 chr1:46806462-46806482 7.86e-01 20 chr21:38905626-38905646 4.86e-01 20 chr6:12608733-12608753 1.24e-01 20 chr14:91840012-91840032 1.41e-02 20 chr2:161934241-161934261 1.97e-02 20 chr16:57411460-57411480 1.00e+00 20 chr21:26934500-26934520 9.94e-01 20 chr1:78148369-78148389 8.58e-01 20 chr13:50798789-50798809 9.53e-01 20 chr17:7482785-7482805 1.00e+00 20 chr1:67637780-67637800 8.77e-01 20 chr2:197313565-197313585 5.70e-01 20 chr12:4616273-4616293 7.66e-02 20 chr6:6587542-6587562 8.47e-02 20 chr11:90434408-90434428 4.49e-04 7_[+3(2.75e-05)]_5 chr20:40091247-40091267 9.95e-01 20 chr11:18127556-18127576 1.00e+00 20 chr1:147806740-147806760 9.19e-01 20 chr5:142593863-142593883 2.87e-01 20 chr3:113250987-113251007 8.08e-01 20 chr5:142594141-142594161 7.40e-01 20 chr22:44947258-44947278 6.69e-02 6_[+3(7.18e-05)]_6 chr6:26158733-26158753 1.00e+00 20 chr5:1495409-1495429 8.55e-01 20 chr17:62971837-62971857 7.91e-01 20 chr8:143645314-143645334 9.18e-01 20 chr15:91209094-91209114 9.67e-01 20 chr21:34814575-34814595 9.84e-01 20 chrX:153629624-153629644 7.32e-01 20 chr8:135563865-135563885 2.54e-01 20 chr12:111074545-11107456 1.39e-02 6_[+1(2.99e-05)]_6 chr7:2913925-2913945 9.98e-01 20 chr17:18965568-18965588 2.74e-01 20 chr1:146556193-146556213 9.11e-01 20 chr6:143164138-143164158 8.82e-01 20 chr1:160423477-160423497 1.59e-01 20 chr6:138230060-138230080 9.98e-01 20 chr6:132009588-132009608 8.77e-01 20 chr22:23244322-23244342 9.61e-01 20 chr17:57078974-57078994 1.43e-02 [+1(5.92e-05)]_12 chr14:65769908-65769928 3.05e-02 20 chr1:12495920-12495940 7.52e-01 20 chr9:134882594-134882614 1.07e-03 2_[+2(1.23e-05)]_10 chr5:159891621-159891641 4.18e-01 20 chr6:26020864-26020884 8.14e-01 20 chr6:26271429-26271449 6.76e-01 20 chr1:210547482-210547502 2.01e-01 20 chr6:27100459-27100479 9.30e-01 20 chrX:109018179-109018199 1.00e+00 20 chr14:102343003-10234302 4.43e-01 20 chr13:95892420-95892440 9.81e-01 20 chr6:11374635-11374655 9.85e-01 20 chr1:213153121-213153141 7.03e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n10.farnam.hpc.yale.internal ********************************************************************************