******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/YBX1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr19:6556277-6556297 1.0000 20 chr14:75953152-75953172 1.0000 20 chr2:5163090-5163110 1.0000 20 chr8:129010904-129010924 1.0000 20 chr2:102658795-102658815 1.0000 20 chr22:30615877-30615897 1.0000 20 chr2:86206212-86206232 1.0000 20 chr7:121169671-121169691 1.0000 20 chr19:14495584-14495604 1.0000 20 chr5:76940718-76940738 1.0000 20 chr12:91523975-91523995 1.0000 20 chr6:161459105-161459125 1.0000 20 chr1:200591269-200591289 1.0000 20 chr10:15476337-15476357 1.0000 20 chr11:6767491-6767511 1.0000 20 chr7:38409221-38409241 1.0000 20 chr16:17352255-17352275 1.0000 20 chr19:3990796-3990816 1.0000 20 chr16:70906875-70906895 1.0000 20 chr3:16592984-16593004 1.0000 20 chr19:44763731-44763751 1.0000 20 chr19:49978048-49978068 1.0000 20 chr12:69648160-69648180 1.0000 20 chr2:216867598-216867618 1.0000 20 chrX:148586249-148586269 1.0000 20 chr15:45027516-45027536 1.0000 20 chr4:56263863-56263883 1.0000 20 chr6:111744679-111744699 1.0000 20 chr13:103569534-10356955 1.0000 20 chr11:128423376-12842339 1.0000 20 chr1:145018369-145018389 1.0000 20 chr11:35293756-35293776 1.0000 20 chr7:130720117-130720137 1.0000 20 chr17:11901370-11901390 1.0000 20 chr4:18413694-18413714 1.0000 20 chr18:51675206-51675226 1.0000 20 chr10:64539794-64539814 1.0000 20 chr11:102415495-10241551 1.0000 20 chr6:2902785-2902805 1.0000 20 chr11:1866448-1866468 1.0000 20 chr12:54752482-54752502 1.0000 20 chr11:35159721-35159741 1.0000 20 chr15:93363421-93363441 1.0000 20 chr7:20324278-20324298 1.0000 20 chr9:128394303-128394323 1.0000 20 chr19:35891480-35891500 1.0000 20 chr14:53647169-53647189 1.0000 20 chr6:150958623-150958643 1.0000 20 chr2:98443058-98443078 1.0000 20 chrX:1363194-1363214 1.0000 20 chr12:27588522-27588542 1.0000 20 chr19:35949241-35949261 1.0000 20 chr15:42924697-42924717 1.0000 20 chr2:91780017-91780037 1.0000 20 chr1:110091799-110091819 1.0000 20 chr17:40335417-40335437 1.0000 20 chr16:21962728-21962748 1.0000 20 chr7:92683095-92683115 1.0000 20 chr21:26765502-26765522 1.0000 20 chr12:46609810-46609830 1.0000 20 chr14:106044493-10604451 1.0000 20 chr4:38735484-38735504 1.0000 20 chr6:40974238-40974258 1.0000 20 chr19:13268295-13268315 1.0000 20 chr13:77728581-77728601 1.0000 20 chr16:13484911-13484931 1.0000 20 chr3:58195823-58195843 1.0000 20 chr20:44740404-44740424 1.0000 20 chr1:51700064-51700084 1.0000 20 chr12:6542774-6542794 1.0000 20 chr7:99594821-99594841 1.0000 20 chr9:126898448-126898468 1.0000 20 chr16:31880426-31880446 1.0000 20 chr10:85749537-85749557 1.0000 20 chr5:133930711-133930731 1.0000 20 chr19:10539904-10539924 1.0000 20 chr1:160518934-160518954 1.0000 20 chr11:117857688-11785770 1.0000 20 chr11:341152-341172 1.0000 20 chr10:91467305-91467325 1.0000 20 chr9:100565574-100565594 1.0000 20 chr4:40297219-40297239 1.0000 20 chr3:152311182-152311202 1.0000 20 chr1:8002099-8002119 1.0000 20 chr1:144536066-144536086 1.0000 20 chr3:49591536-49591556 1.0000 20 chr9:134377903-134377923 1.0000 20 chr6:44149648-44149668 1.0000 20 chr19:51183210-51183230 1.0000 20 chr12:27082701-27082721 1.0000 20 chr18:28070201-28070221 1.0000 20 chr14:106051853-10605187 1.0000 20 chr19:49947451-49947471 1.0000 20 chr2:128588285-128588305 1.0000 20 chr7:8213659-8213679 1.0000 20 chr13:74561899-74561919 1.0000 20 chr17:8828566-8828586 1.0000 20 chr1:112197890-112197910 1.0000 20 chr12:7284039-7284059 1.0000 20 chr3:47347546-47347566 1.0000 20 chr7:95064826-95064846 1.0000 20 chr10:78937112-78937132 1.0000 20 chr6:32144228-32144248 1.0000 20 chr1:31975409-31975429 1.0000 20 chr6:25041945-25041965 1.0000 20 chr3:11766689-11766709 1.0000 20 chr8:143813046-143813066 1.0000 20 chr17:4902796-4902816 1.0000 20 chr15:68327291-68327311 1.0000 20 chr14:75518434-75518454 1.0000 20 chr16:90074419-90074439 1.0000 20 chr18:60722592-60722612 1.0000 20 chr18:49282651-49282671 1.0000 20 chr4:114559628-114559648 1.0000 20 chr2:25352448-25352468 1.0000 20 chr11:94283796-94283816 1.0000 20 chr20:25175816-25175836 1.0000 20 chr9:5600462-5600482 1.0000 20 chr12:123196182-12319620 1.0000 20 chr3:31550712-31550732 1.0000 20 chr1:58388015-58388035 1.0000 20 chr12:96896892-96896912 1.0000 20 chr16:12083716-12083736 1.0000 20 chr1:31264295-31264315 1.0000 20 chr12:103353238-10335325 1.0000 20 chr10:115438716-11543873 1.0000 20 chr10:101698847-10169886 1.0000 20 chr12:26311175-26311195 1.0000 20 chr12:100536931-10053695 1.0000 20 chr20:1722213-1722233 1.0000 20 chr21:34754625-34754645 1.0000 20 chr16:85190759-85190779 1.0000 20 chr6:126317584-126317604 1.0000 20 chr9:126852585-126852605 1.0000 20 chr1:53192740-53192760 1.0000 20 chr6:26382970-26382990 1.0000 20 chr4:114557311-114557331 1.0000 20 chr14:75535336-75535356 1.0000 20 chr19:49371628-49371648 1.0000 20 chr5:132143187-132143207 1.0000 20 chr20:48236382-48236402 1.0000 20 chr21:15470450-15470470 1.0000 20 chr4:103546545-103546565 1.0000 20 chr1:28470812-28470832 1.0000 20 chr1:21672582-21672602 1.0000 20 chr10:90746504-90746524 1.0000 20 chr11:82869513-82869533 1.0000 20 chr5:131748130-131748150 1.0000 20 chr5:133892624-133892644 1.0000 20 chr12:45366678-45366698 1.0000 20 chr3:189218930-189218950 1.0000 20 chr7:99967408-99967428 1.0000 20 chr1:168993752-168993772 1.0000 20 chr6:27124816-27124836 1.0000 20 chr15:94782175-94782195 1.0000 20 chr3:67056137-67056157 1.0000 20 chr9:138785105-138785125 1.0000 20 chr1:16941104-16941124 1.0000 20 chr1:235107967-235107987 1.0000 20 chr17:9950155-9950175 1.0000 20 chr10:112147508-11214752 1.0000 20 chr4:47020115-47020135 1.0000 20 chr2:86227105-86227125 1.0000 20 chr7:49809257-49809277 1.0000 20 chrX:3618649-3618669 1.0000 20 chr12:53714870-53714890 1.0000 20 chr16:75413106-75413126 1.0000 20 chr7:104850037-104850057 1.0000 20 chr12:8235153-8235173 1.0000 20 chr8:23366560-23366580 1.0000 20 chr5:148799553-148799573 1.0000 20 chr7:125209282-125209302 1.0000 20 chr12:27488701-27488721 1.0000 20 chr6:33138092-33138112 1.0000 20 chr19:51323961-51323981 1.0000 20 chr10:120950549-12095056 1.0000 20 chr2:114458247-114458267 1.0000 20 chr6:157971423-157971443 1.0000 20 chr2:97148092-97148112 1.0000 20 chr20:6625890-6625910 1.0000 20 chr5:138951355-138951375 1.0000 20 chr11:85930045-85930065 1.0000 20 chr17:38136247-38136267 1.0000 20 chr22:25966102-25966122 1.0000 20 chr19:3369182-3369202 1.0000 20 chr15:96900853-96900873 1.0000 20 chr15:99496303-99496323 1.0000 20 chr7:138796840-138796860 1.0000 20 chr16:57075133-57075153 1.0000 20 chr15:73924509-73924529 1.0000 20 chr2:199161771-199161791 1.0000 20 chr6:57181151-57181171 1.0000 20 chr15:45005179-45005199 1.0000 20 chr10:81947928-81947948 1.0000 20 chr1:235530338-235530358 1.0000 20 chr19:45754219-45754239 1.0000 20 chr7:32540332-32540352 1.0000 20 chr1:203723139-203723159 1.0000 20 chr9:113776321-113776341 1.0000 20 chr19:47781082-47781102 1.0000 20 chr3:57984132-57984152 1.0000 20 chr19:4229974-4229994 1.0000 20 chr2:58218075-58218095 1.0000 20 chr2:12570664-12570684 1.0000 20 chr7:26006279-26006299 1.0000 20 chr19:48833177-48833197 1.0000 20 chr14:93674537-93674557 1.0000 20 chr17:74816373-74816393 1.0000 20 chr21:39617523-39617543 1.0000 20 chr13:29181563-29181583 1.0000 20 chr2:62964504-62964524 1.0000 20 chr19:2592927-2592947 1.0000 20 chr6:143129571-143129591 1.0000 20 chr1:226295610-226295630 1.0000 20 chr8:121816474-121816494 1.0000 20 chr5:150117330-150117350 1.0000 20 chr16:89031232-89031252 1.0000 20 chr6:84569726-84569746 1.0000 20 chr9:37036137-37036157 1.0000 20 chr12:94800166-94800186 1.0000 20 chrX:106953991-106954011 1.0000 20 chr19:6598545-6598565 1.0000 20 chr6:138131260-138131280 1.0000 20 chr1:202128840-202128860 1.0000 20 chr13:49687329-49687349 1.0000 20 chr15:54375914-54375934 1.0000 20 chr1:100531294-100531314 1.0000 20 chr4:121367506-121367526 1.0000 20 chr17:39833069-39833089 1.0000 20 chr15:66649436-66649456 1.0000 20 chr4:184328870-184328890 1.0000 20 chr16:89041250-89041270 1.0000 20 chr3:99667570-99667590 1.0000 20 chr11:115792912-11579293 1.0000 20 chr7:95083971-95083991 1.0000 20 chr17:56418010-56418030 1.0000 20 chr1:32423860-32423880 1.0000 20 chr14:106034616-10603463 1.0000 20 chr9:6717312-6717332 1.0000 20 chr1:27951127-27951147 1.0000 20 chr12:56320452-56320472 1.0000 20 chr5:110090158-110090178 1.0000 20 chr1:209928932-209928952 1.0000 20 chr11:64388882-64388902 1.0000 20 chr4:113438232-113438252 1.0000 20 chr4:83380078-83380098 1.0000 20 chr2:30440566-30440586 1.0000 20 chr1:31955663-31955683 1.0000 20 chr13:61821959-61821979 1.0000 20 chr14:95603455-95603475 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_YBX1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/YBX1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.265 C 0.241 G 0.219 T 0.276 Background letter frequencies (from file dataset with add-one prior applied): A 0.265 C 0.241 G 0.219 T 0.276 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GRAAGRAA MEME-1 width = 8 sites = 69 llr = 497 E-value = 2.1e-056 ******************************************************************************** -------------------------------------------------------------------------------- Motif GRAAGRAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 349a1579 pos.-specific C :::::::: probability G 761:9431 matrix T :::::::: bits 2.2 2.0 * 1.8 ** 1.5 ** Relative 1.3 *** * Entropy 1.1 **** ** (10.4 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGAAGAAA consensus AA GG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRAAGRAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr4:83380078-83380098 6 2.51e-05 TGGGT GGAAGAAA CAGCTCA chr3:99667570-99667590 6 2.51e-05 ggaag ggaaggaa aggaaaa chr19:2592927-2592947 1 2.51e-05 . ggaaggaa ggaaggaagg chr21:39617523-39617543 10 2.51e-05 agaaaggag ggaaggaa gga chr3:57984132-57984152 3 2.51e-05 ga ggaagaaa gaagaaagaa chr1:203723139-203723159 1 2.51e-05 . ggaaggaa ggaaggaaag chr7:138796840-138796860 5 2.51e-05 gaaa ggaaggaa gggaaagg chr17:9950155-9950175 2 2.51e-05 a ggaaggaa agaaaagaaa chr6:26382970-26382990 2 2.51e-05 a ggaaggaa ggaaggaaga chr3:31550712-31550732 6 2.51e-05 aggaa ggaaggaa ggaagag chr12:27082701-27082721 11 2.51e-05 agagagaaag ggaagaaa ga chr11:341152-341172 2 2.51e-05 a ggaaggaa agggaaggga chr7:92683095-92683115 1 2.51e-05 . ggaaggaa gaagaaaaaa chr7:104850037-104850057 9 5.54e-05 gggaaggg gaaaggaa aaag chr10:112147508-11214752 3 5.54e-05 gg gaaagaaa gaaagagaaa chr9:138785105-138785125 3 5.54e-05 at gaaagaaa gaaaagaaaa chr6:27124816-27124836 4 5.54e-05 aga gaaagaaa gaaggaagg chr1:168993752-168993772 7 5.54e-05 aaaaga gaaagaaa gagaga chr20:44740404-44740424 6 5.54e-05 agaga gaaagaaa agagaga chr21:26765502-26765522 2 5.54e-05 a gaaaggaa ggagagaggg chr15:45027516-45027536 9 5.54e-05 aagaaaga gaaagaaa caga chr14:75953152-75953172 13 5.54e-05 aggagagaaa gaaagaaa chr19:6598545-6598565 10 7.61e-05 agacagaga ggaagaga cag chr6:143129571-143129591 13 1.01e-04 gagagatgaa gaaaggga chr2:97148092-97148112 9 1.01e-04 gaaacaaa gaaagaga aaga chr19:10539904-10539924 1 1.01e-04 . gaaagaga gggacggagg chr10:85749537-85749557 11 1.01e-04 aagagagaga gaaaggga gg chr3:16592984-16593004 4 1.01e-04 aga gaaagaga aaaaagaaa chr16:17352255-17352275 2 1.01e-04 g gaaaggga gaaacaaacc chr21:34754625-34754645 13 1.32e-04 gaacagaaaa agaagaaa chr12:103353238-10335325 2 1.32e-04 a agaagaaa aaAACGAAAA chr1:31264295-31264315 11 1.32e-04 agagagagag agaagaAA GA chr1:58388015-58388035 2 1.32e-04 t agaagaaa tgaaggatgt chr19:35891480-35891500 8 1.32e-04 agaaaga agaaggaa aagaa chr7:130720117-130720137 13 1.32e-04 aagaagaaga agaagaaa chr2:102658795-102658815 11 1.32e-04 ggaaaaagga agaaggaa gg chr1:160518934-160518954 7 1.68e-04 CTCCTT AAAAGGAA GTAGCA chr6:40974238-40974258 5 1.68e-04 agaa aaaagaaa gtcaagaa chr6:111744679-111744699 4 1.68e-04 gag aaaagaaa aagagtatg chr16:12083716-12083736 2 1.93e-04 G AGAAGGGA ACGTTTGAGT chrX:148586249-148586269 12 2.14e-04 gaccaatgga gggaggaa a chr14:93674537-93674557 9 2.35e-04 GATGGGTA GGAAGAAG ACTG chr10:90746504-90746524 3 2.35e-04 aa ggaagaag tataggaagg chr10:101698847-10169886 12 2.65e-04 ggtaaaggaa aaaaggga g chr6:138131260-138131280 1 2.90e-04 . gagagaaa gagggagaga chr1:202128840-202128860 8 3.32e-04 GAGAGAG GGGAGAGA GGCCA chr7:26006279-26006299 9 3.32e-04 gggagtga gggagaga ggga chr12:27488701-27488721 12 3.32e-04 gaggagaggg gaaaggag g chr13:74561899-74561919 13 3.32e-04 aattggagag gggagaga chr9:100565574-100565594 3 3.32e-04 gc gggaggga ggagaaaagg chr18:51675206-51675226 5 3.32e-04 cgat gaaaggag ccattagc chr3:152311182-152311202 4 3.49e-04 aga ggaagagg aggaggagg chr14:95603455-95603475 8 4.28e-04 agcaagg gaaagggg aaaag chr1:8002099-8002119 10 4.28e-04 aggaggagg aggaggaa gaa chr1:145018369-145018389 1 4.28e-04 . GAAAGGGG AAGTTGGAAA chr2:98443058-98443078 7 5.71e-04 gagaca aagaggaa gtcaga chr1:31955663-31955683 7 8.14e-04 ACTGTC AGAAGCAA ATGGGG chr16:75413106-75413126 7 8.14e-04 ccaagc agaagcaa ggaaat chr11:94283796-94283816 7 8.14e-04 ACAAAG TGAAGAGA CGATCA chr11:35159721-35159741 9 8.14e-04 TGGTTTTA TGAAGAGA TGTG chrX:1363194-1363214 8 9.52e-04 gaaacag agaaaaaa gaatg chr4:113438232-113438252 4 1.04e-03 GAA GGGAGAGG ACACTGGGG chr16:13484911-13484931 12 1.04e-03 ggatgagaat taaagaga g chr17:56418010-56418030 1 1.12e-03 . aaaaaaaa cccaaaccaa chr15:45005179-45005199 13 1.12e-03 ctgtctctca aaaaagaa chr1:112197890-112197910 1 1.12e-03 . aaaaaaaa aCAACAGAAA chr13:77728581-77728601 2 1.12e-03 A AAAAAGAA CTCTAAGATG chr11:1866448-1866468 2 1.27e-03 a ggcagaga gacagagaca chr9:134377903-134377923 5 1.43e-03 cccg ggaagcgg aggttgcg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRAAGRAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:83380078-83380098 2.5e-05 5_[+1]_7 chr3:99667570-99667590 2.5e-05 5_[+1]_7 chr19:2592927-2592947 2.5e-05 [+1]_12 chr21:39617523-39617543 2.5e-05 9_[+1]_3 chr3:57984132-57984152 2.5e-05 2_[+1]_10 chr1:203723139-203723159 2.5e-05 [+1]_12 chr7:138796840-138796860 2.5e-05 4_[+1]_8 chr17:9950155-9950175 2.5e-05 1_[+1]_11 chr6:26382970-26382990 2.5e-05 1_[+1]_11 chr3:31550712-31550732 2.5e-05 5_[+1]_7 chr12:27082701-27082721 2.5e-05 10_[+1]_2 chr11:341152-341172 2.5e-05 1_[+1]_11 chr7:92683095-92683115 2.5e-05 [+1]_12 chr7:104850037-104850057 5.5e-05 8_[+1]_4 chr10:112147508-11214752 5.5e-05 2_[+1]_10 chr9:138785105-138785125 5.5e-05 2_[+1]_10 chr6:27124816-27124836 5.5e-05 3_[+1]_9 chr1:168993752-168993772 5.5e-05 6_[+1]_6 chr20:44740404-44740424 5.5e-05 5_[+1]_7 chr21:26765502-26765522 5.5e-05 1_[+1]_11 chr15:45027516-45027536 5.5e-05 8_[+1]_4 chr14:75953152-75953172 5.5e-05 12_[+1] chr19:6598545-6598565 7.6e-05 9_[+1]_3 chr6:143129571-143129591 0.0001 12_[+1] chr2:97148092-97148112 0.0001 8_[+1]_4 chr19:10539904-10539924 0.0001 [+1]_12 chr10:85749537-85749557 0.0001 10_[+1]_2 chr3:16592984-16593004 0.0001 3_[+1]_9 chr16:17352255-17352275 0.0001 1_[+1]_11 chr21:34754625-34754645 0.00013 12_[+1] chr12:103353238-10335325 0.00013 1_[+1]_11 chr1:31264295-31264315 0.00013 10_[+1]_2 chr1:58388015-58388035 0.00013 1_[+1]_11 chr19:35891480-35891500 0.00013 7_[+1]_5 chr7:130720117-130720137 0.00013 12_[+1] chr2:102658795-102658815 0.00013 10_[+1]_2 chr1:160518934-160518954 0.00017 6_[+1]_6 chr6:40974238-40974258 0.00017 4_[+1]_8 chr6:111744679-111744699 0.00017 3_[+1]_9 chr16:12083716-12083736 0.00019 1_[+1]_11 chrX:148586249-148586269 0.00021 11_[+1]_1 chr14:93674537-93674557 0.00023 8_[+1]_4 chr10:90746504-90746524 0.00023 2_[+1]_10 chr10:101698847-10169886 0.00027 11_[+1]_1 chr6:138131260-138131280 0.00029 [+1]_12 chr1:202128840-202128860 0.00033 7_[+1]_5 chr7:26006279-26006299 0.00033 8_[+1]_4 chr12:27488701-27488721 0.00033 11_[+1]_1 chr13:74561899-74561919 0.00033 12_[+1] chr9:100565574-100565594 0.00033 2_[+1]_10 chr18:51675206-51675226 0.00033 4_[+1]_8 chr3:152311182-152311202 0.00035 3_[+1]_9 chr14:95603455-95603475 0.00043 7_[+1]_5 chr1:8002099-8002119 0.00043 9_[+1]_3 chr1:145018369-145018389 0.00043 [+1]_12 chr2:98443058-98443078 0.00057 6_[+1]_6 chr1:31955663-31955683 0.00081 6_[+1]_6 chr16:75413106-75413126 0.00081 6_[+1]_6 chr11:94283796-94283816 0.00081 6_[+1]_6 chr11:35159721-35159741 0.00081 8_[+1]_4 chrX:1363194-1363214 0.00095 7_[+1]_5 chr4:113438232-113438252 0.001 3_[+1]_9 chr16:13484911-13484931 0.001 11_[+1]_1 chr17:56418010-56418030 0.0011 [+1]_12 chr15:45005179-45005199 0.0011 12_[+1] chr1:112197890-112197910 0.0011 [+1]_12 chr13:77728581-77728601 0.0011 1_[+1]_11 chr11:1866448-1866468 0.0013 1_[+1]_11 chr9:134377903-134377923 0.0014 4_[+1]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRAAGRAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GRAAGRAA width=8 seqs=69 chr4:83380078-83380098 ( 6) GGAAGAAA 1 chr3:99667570-99667590 ( 6) GGAAGGAA 1 chr19:2592927-2592947 ( 1) GGAAGGAA 1 chr21:39617523-39617543 ( 10) GGAAGGAA 1 chr3:57984132-57984152 ( 3) GGAAGAAA 1 chr1:203723139-203723159 ( 1) GGAAGGAA 1 chr7:138796840-138796860 ( 5) GGAAGGAA 1 chr17:9950155-9950175 ( 2) GGAAGGAA 1 chr6:26382970-26382990 ( 2) GGAAGGAA 1 chr3:31550712-31550732 ( 6) GGAAGGAA 1 chr12:27082701-27082721 ( 11) GGAAGAAA 1 chr11:341152-341172 ( 2) GGAAGGAA 1 chr7:92683095-92683115 ( 1) GGAAGGAA 1 chr7:104850037-104850057 ( 9) GAAAGGAA 1 chr10:112147508-11214752 ( 3) GAAAGAAA 1 chr9:138785105-138785125 ( 3) GAAAGAAA 1 chr6:27124816-27124836 ( 4) GAAAGAAA 1 chr1:168993752-168993772 ( 7) GAAAGAAA 1 chr20:44740404-44740424 ( 6) GAAAGAAA 1 chr21:26765502-26765522 ( 2) GAAAGGAA 1 chr15:45027516-45027536 ( 9) GAAAGAAA 1 chr14:75953152-75953172 ( 13) GAAAGAAA 1 chr19:6598545-6598565 ( 10) GGAAGAGA 1 chr6:143129571-143129591 ( 13) GAAAGGGA 1 chr2:97148092-97148112 ( 9) GAAAGAGA 1 chr19:10539904-10539924 ( 1) GAAAGAGA 1 chr10:85749537-85749557 ( 11) GAAAGGGA 1 chr3:16592984-16593004 ( 4) GAAAGAGA 1 chr16:17352255-17352275 ( 2) GAAAGGGA 1 chr21:34754625-34754645 ( 13) AGAAGAAA 1 chr12:103353238-10335325 ( 2) AGAAGAAA 1 chr1:31264295-31264315 ( 11) AGAAGAAA 1 chr1:58388015-58388035 ( 2) AGAAGAAA 1 chr19:35891480-35891500 ( 8) AGAAGGAA 1 chr7:130720117-130720137 ( 13) AGAAGAAA 1 chr2:102658795-102658815 ( 11) AGAAGGAA 1 chr1:160518934-160518954 ( 7) AAAAGGAA 1 chr6:40974238-40974258 ( 5) AAAAGAAA 1 chr6:111744679-111744699 ( 4) AAAAGAAA 1 chr16:12083716-12083736 ( 2) AGAAGGGA 1 chrX:148586249-148586269 ( 12) GGGAGGAA 1 chr14:93674537-93674557 ( 9) GGAAGAAG 1 chr10:90746504-90746524 ( 3) GGAAGAAG 1 chr10:101698847-10169886 ( 12) AAAAGGGA 1 chr6:138131260-138131280 ( 1) GAGAGAAA 1 chr1:202128840-202128860 ( 8) GGGAGAGA 1 chr7:26006279-26006299 ( 9) GGGAGAGA 1 chr12:27488701-27488721 ( 12) GAAAGGAG 1 chr13:74561899-74561919 ( 13) GGGAGAGA 1 chr9:100565574-100565594 ( 3) GGGAGGGA 1 chr18:51675206-51675226 ( 5) GAAAGGAG 1 chr3:152311182-152311202 ( 4) GGAAGAGG 1 chr14:95603455-95603475 ( 8) GAAAGGGG 1 chr1:8002099-8002119 ( 10) AGGAGGAA 1 chr1:145018369-145018389 ( 1) GAAAGGGG 1 chr2:98443058-98443078 ( 7) AAGAGGAA 1 chr1:31955663-31955683 ( 7) AGAAGCAA 1 chr16:75413106-75413126 ( 7) AGAAGCAA 1 chr11:94283796-94283816 ( 7) TGAAGAGA 1 chr11:35159721-35159741 ( 9) TGAAGAGA 1 chrX:1363194-1363214 ( 8) AGAAAAAA 1 chr4:113438232-113438252 ( 4) GGGAGAGG 1 chr16:13484911-13484931 ( 12) TAAAGAGA 1 chr17:56418010-56418030 ( 1) AAAAAAAA 1 chr15:45005179-45005199 ( 13) AAAAAGAA 1 chr1:112197890-112197910 ( 1) AAAAAAAA 1 chr13:77728581-77728601 ( 2) AAAAAGAA 1 chr11:1866448-1866468 ( 2) GGCAGAGA 1 chr9:134377903-134377923 ( 5) GGAAGCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRAAGRAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 6.92101 E= 2.1e-056 20 -1275 157 -266 72 -1275 137 -1275 169 -405 -75 -1275 192 -1275 -1275 -1275 -187 -1275 208 -1275 98 -247 99 -1275 136 -1275 54 -1275 172 -1275 -75 -1275 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRAAGRAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 69 E= 2.1e-056 0.304348 0.000000 0.652174 0.043478 0.434783 0.000000 0.565217 0.000000 0.855072 0.014493 0.130435 0.000000 1.000000 0.000000 0.000000 0.000000 0.072464 0.000000 0.927536 0.000000 0.521739 0.043478 0.434783 0.000000 0.681159 0.000000 0.318841 0.000000 0.869565 0.000000 0.130435 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRAAGRAA MEME-1 regular expression -------------------------------------------------------------------------------- [GA][GA]AAG[AG][AG]A -------------------------------------------------------------------------------- Time 2.41 secs. ******************************************************************************** ******************************************************************************** MOTIF CTYYCTYT MEME-2 width = 8 sites = 84 llr = 528 E-value = 1.6e-046 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTYYCTYT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 8:358:53 probability G ::1:1::: matrix T 2a651a57 bits 2.2 2.0 1.8 * 1.5 * * Relative 1.3 * * Entropy 1.1 ** ** (9.1 bits) 0.9 ** ***** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTTTCTCT consensus CC TC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTYYCTYT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr4:184328870-184328890 10 4.20e-05 ttcttcttg ctttctct ttt chr12:96896892-96896912 12 4.20e-05 ttctttctcg ctttctct c chr19:49947451-49947471 6 4.20e-05 tcctt ctttctct gtcttcc chr12:27588522-27588542 3 4.20e-05 ct ctttctct ctctcactct chr12:54752482-54752502 12 4.20e-05 CAAATGTGTC CTTTCTCT T chr1:32423860-32423880 10 9.01e-05 ttcccttcc cttccttt ctt chr7:125209282-125209302 13 9.01e-05 ttctttccct ctttcttt chr4:103546545-103546565 12 9.01e-05 tcttctctcc cttccttt t chr9:126852585-126852605 2 9.01e-05 t ctttcttt ccttctttcg chr20:1722213-1722233 11 9.01e-05 ttttcccttc cttccttt tc chr10:78937112-78937132 9 9.01e-05 cttccttg cttccttt cttc chr10:91467305-91467325 1 9.01e-05 . ctttcttt cccttcttcc chr19:13268295-13268315 4 9.01e-05 ttt ctttcttt tctttccct chr15:42924697-42924717 8 9.01e-05 cttccct ctttcttt tcttc chr6:161459105-161459125 6 9.01e-05 cctca cttccttt tttcctt chr16:57075133-57075153 10 1.27e-04 TGATCTGCT CTCTCTCT CTG chr20:6625890-6625910 13 1.27e-04 acttccctcc ctccctct chr3:11766689-11766709 3 1.27e-04 tc ctccctct cctccttctc chr18:28070201-28070221 8 1.27e-04 AAGCCTt ctctctct ttctc chr7:99594821-99594841 13 1.27e-04 tccctcctcc ctccctct chr1:51700064-51700084 3 1.27e-04 ct ctctctct ttctCCTTCC chr17:11901370-11901390 6 1.27e-04 cttct ctctctct ctctcAA chr19:14495584-14495604 4 1.27e-04 cac ctctctct atcACCATG chr22:30615877-30615897 7 1.27e-04 tccacc ctctctct ttcttt chr5:110090158-110090178 4 1.69e-04 TTA CTCCCTTT TTTCACCTT chr8:121816474-121816494 2 1.69e-04 c ctcccttt attccttcct chr15:68327291-68327311 4 1.69e-04 ttt ctcccttt ctgtctctc chr7:20324278-20324298 6 1.69e-04 ttctt ctctcttt tttctcc chr5:138951355-138951375 9 2.05e-04 ctccctca cttcctcc ttcc chr7:121169671-121169691 6 2.05e-04 ccatc cttcctcc ctccctc chr1:209928932-209928952 9 2.47e-04 TTCTATTC CTTCCTTC ATCC chr7:49809257-49809277 10 2.47e-04 ttccctttc ctttcttc tct chr3:189218930-189218950 5 2.47e-04 ttca cttccttc cttccttc chr12:45366678-45366698 6 2.47e-04 ccttt cttccttc tttcctt chr11:102415495-10241551 6 2.47e-04 ctttc cttccttc cttcctt chr4:18413694-18413714 9 2.47e-04 cttccctc cttccttc cttc chr10:15476337-15476357 5 2.47e-04 tttc cttccttc cccccctt chr8:129010904-129010924 6 2.47e-04 ttttc cttccttc cttccct chr12:26311175-26311195 6 2.79e-04 ttttc ctccctcc catcctt chr18:60722592-60722612 4 2.79e-04 ccc ctccctcc agcccttcc chr13:103569534-10356955 5 2.79e-04 tttc ctccctcc ctcccttc chr15:73924509-73924529 2 3.16e-04 C CTCCCTTC CCTAATTTAT chr12:6542774-6542794 8 3.16e-04 tccttcc ctcccttc ttttc chr12:91523975-91523995 3 3.16e-04 cc ctcccttc gttccttcct chr15:45005179-45005199 3 3.49e-04 cc ctgtctct caaaaaagaa chr14:106044493-10604451 3 3.49e-04 at ctgtctct ctgtctctgt chr1:100531294-100531314 2 4.36e-04 c ttttctct tcccctttcc chr2:86206212-86206232 10 4.36e-04 ttctcattc tttcctct ttc chr11:82869513-82869533 10 4.91e-04 AAGGAGTGT TTTTCTTT ACC chr1:31975409-31975429 1 4.91e-04 . tttccttt tctcttttca chr15:93363421-93363441 3 4.91e-04 TT TTTTCTTT TTTTTTTCCC chr4:56263863-56263883 11 4.91e-04 tcatttctcc tttccttt cc chr19:3990796-3990816 12 4.91e-04 cgcccagccT TTttcttt c chr4:40297219-40297239 2 5.62e-04 t ctgcctcc atctccatct chr19:44763731-44763751 5 5.62e-04 acct ctgcctcc tgggttca chr2:216867598-216867618 10 6.10e-04 tccctgtcc ttctcttt ctg chr4:47020115-47020135 11 7.33e-04 tctgcctcct cttcttct cc chr17:40335417-40335437 11 7.33e-04 TGCAGCTTGc ctgccttc ct chr5:133930711-133930731 7 7.71e-04 ccacac ctttgtct ttgctg chr12:123196182-12319620 1 8.75e-04 . cttttttt ttttgagaca chr2:91780017-91780037 10 9.97e-04 ccctcccta ttccctcc cct chr14:53647169-53647189 7 1.03e-03 cttcga ctccgtct ttgtct chr6:2902785-2902805 1 1.03e-03 . ctctgtct gccaggctgg chr19:6556277-6556297 10 1.03e-03 tatctcaat ctctgtct gta chr3:47347546-47347566 10 1.15e-03 tgatttctg ctcctttt aat chr1:53192740-53192760 11 1.43e-03 tttcgctgct cttccttg ct chr17:4902796-4902816 7 1.43e-03 TGTCTT ATTTCTCT AATTTT chr7:38409221-38409241 1 1.43e-03 . atttctct atttgtatct chr11:6767491-6767511 12 1.43e-03 ATTTACATCA ATTTCTCT T chr12:100536931-10053695 7 1.72e-03 GTCCTA CTTCCCTT ATTCAT chr7:95083971-95083991 11 1.85e-03 gagtctttaa ctcccttg ag chr11:115792912-11579293 10 1.85e-03 tgcagaggc atctctct gct chr5:76940718-76940738 1 1.89e-03 . ctcttttc catcggtcct chr19:49371628-49371648 12 2.15e-03 tcCAATCTTT CTGTTTCT G chr1:235530338-235530358 8 2.40e-03 TCTATTA TTTTTTCT ATCAC chr15:96900853-96900873 4 2.40e-03 ttt ttttttct tacctctcc chr14:75518434-75518454 12 2.40e-03 tgtttactta ttgtcttc t chr4:121367506-121367526 1 2.61e-03 . tttttttt atttgtcatt chr2:25352448-25352468 8 2.81e-03 acttctg ttttgttt tttgc chrX:106953991-106954011 5 3.09e-03 tcag ttttctcg tctgtcaa chr4:114557311-114557331 12 3.09e-03 tcactcccag ctgtgtcc a chr16:89041250-89041270 2 3.93e-03 T CTGTCCCC TGGGGGCCTT chr11:64388882-64388902 6 4.32e-03 AGACC TTTTCCCC AAGGGCT chr13:49687329-49687349 1 4.73e-03 . cttctctt acctctcgcc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTYYCTYT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:184328870-184328890 4.2e-05 9_[+2]_3 chr12:96896892-96896912 4.2e-05 11_[+2]_1 chr19:49947451-49947471 4.2e-05 5_[+2]_7 chr12:27588522-27588542 4.2e-05 2_[+2]_10 chr12:54752482-54752502 4.2e-05 11_[+2]_1 chr1:32423860-32423880 9e-05 9_[+2]_3 chr7:125209282-125209302 9e-05 12_[+2] chr4:103546545-103546565 9e-05 11_[+2]_1 chr9:126852585-126852605 9e-05 1_[+2]_11 chr20:1722213-1722233 9e-05 10_[+2]_2 chr10:78937112-78937132 9e-05 8_[+2]_4 chr10:91467305-91467325 9e-05 [+2]_12 chr19:13268295-13268315 9e-05 3_[+2]_9 chr15:42924697-42924717 9e-05 7_[+2]_5 chr6:161459105-161459125 9e-05 5_[+2]_7 chr16:57075133-57075153 0.00013 9_[+2]_3 chr20:6625890-6625910 0.00013 12_[+2] chr3:11766689-11766709 0.00013 2_[+2]_10 chr18:28070201-28070221 0.00013 7_[+2]_5 chr7:99594821-99594841 0.00013 12_[+2] chr1:51700064-51700084 0.00013 2_[+2]_10 chr17:11901370-11901390 0.00013 5_[+2]_7 chr19:14495584-14495604 0.00013 3_[+2]_9 chr22:30615877-30615897 0.00013 6_[+2]_6 chr5:110090158-110090178 0.00017 3_[+2]_9 chr8:121816474-121816494 0.00017 1_[+2]_11 chr15:68327291-68327311 0.00017 3_[+2]_9 chr7:20324278-20324298 0.00017 5_[+2]_7 chr5:138951355-138951375 0.00021 8_[+2]_4 chr7:121169671-121169691 0.00021 5_[+2]_7 chr1:209928932-209928952 0.00025 8_[+2]_4 chr7:49809257-49809277 0.00025 9_[+2]_3 chr3:189218930-189218950 0.00025 4_[+2]_8 chr12:45366678-45366698 0.00025 5_[+2]_7 chr11:102415495-10241551 0.00025 5_[+2]_7 chr4:18413694-18413714 0.00025 8_[+2]_4 chr10:15476337-15476357 0.00025 4_[+2]_8 chr8:129010904-129010924 0.00025 5_[+2]_7 chr12:26311175-26311195 0.00028 5_[+2]_7 chr18:60722592-60722612 0.00028 3_[+2]_9 chr13:103569534-10356955 0.00028 4_[+2]_8 chr15:73924509-73924529 0.00032 1_[+2]_11 chr12:6542774-6542794 0.00032 7_[+2]_5 chr12:91523975-91523995 0.00032 2_[+2]_10 chr15:45005179-45005199 0.00035 2_[+2]_10 chr14:106044493-10604451 0.00035 2_[+2]_10 chr1:100531294-100531314 0.00044 1_[+2]_11 chr2:86206212-86206232 0.00044 9_[+2]_3 chr11:82869513-82869533 0.00049 9_[+2]_3 chr1:31975409-31975429 0.00049 [+2]_12 chr15:93363421-93363441 0.00049 2_[+2]_10 chr4:56263863-56263883 0.00049 10_[+2]_2 chr19:3990796-3990816 0.00049 11_[+2]_1 chr4:40297219-40297239 0.00056 1_[+2]_11 chr19:44763731-44763751 0.00056 4_[+2]_8 chr2:216867598-216867618 0.00061 9_[+2]_3 chr4:47020115-47020135 0.00073 10_[+2]_2 chr17:40335417-40335437 0.00073 10_[+2]_2 chr5:133930711-133930731 0.00077 6_[+2]_6 chr12:123196182-12319620 0.00087 [+2]_12 chr2:91780017-91780037 0.001 9_[+2]_3 chr14:53647169-53647189 0.001 6_[+2]_6 chr6:2902785-2902805 0.001 [+2]_12 chr19:6556277-6556297 0.001 9_[+2]_3 chr3:47347546-47347566 0.0012 9_[+2]_3 chr1:53192740-53192760 0.0014 10_[+2]_2 chr17:4902796-4902816 0.0014 6_[+2]_6 chr7:38409221-38409241 0.0014 [+2]_12 chr11:6767491-6767511 0.0014 11_[+2]_1 chr12:100536931-10053695 0.0017 6_[+2]_6 chr7:95083971-95083991 0.0019 10_[+2]_2 chr11:115792912-11579293 0.0019 9_[+2]_3 chr5:76940718-76940738 0.0019 [+2]_12 chr19:49371628-49371648 0.0022 11_[+2]_1 chr1:235530338-235530358 0.0024 7_[+2]_5 chr15:96900853-96900873 0.0024 3_[+2]_9 chr14:75518434-75518454 0.0024 11_[+2]_1 chr4:121367506-121367526 0.0026 [+2]_12 chr2:25352448-25352468 0.0028 7_[+2]_5 chrX:106953991-106954011 0.0031 4_[+2]_8 chr4:114557311-114557331 0.0031 11_[+2]_1 chr16:89041250-89041270 0.0039 1_[+2]_11 chr11:64388882-64388902 0.0043 5_[+2]_7 chr13:49687329-49687349 0.0047 [+2]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTYYCTYT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTYYCTYT width=8 seqs=84 chr4:184328870-184328890 ( 10) CTTTCTCT 1 chr12:96896892-96896912 ( 12) CTTTCTCT 1 chr19:49947451-49947471 ( 6) CTTTCTCT 1 chr12:27588522-27588542 ( 3) CTTTCTCT 1 chr12:54752482-54752502 ( 12) CTTTCTCT 1 chr1:32423860-32423880 ( 10) CTTCCTTT 1 chr7:125209282-125209302 ( 13) CTTTCTTT 1 chr4:103546545-103546565 ( 12) CTTCCTTT 1 chr9:126852585-126852605 ( 2) CTTTCTTT 1 chr20:1722213-1722233 ( 11) CTTCCTTT 1 chr10:78937112-78937132 ( 9) CTTCCTTT 1 chr10:91467305-91467325 ( 1) CTTTCTTT 1 chr19:13268295-13268315 ( 4) CTTTCTTT 1 chr15:42924697-42924717 ( 8) CTTTCTTT 1 chr6:161459105-161459125 ( 6) CTTCCTTT 1 chr16:57075133-57075153 ( 10) CTCTCTCT 1 chr20:6625890-6625910 ( 13) CTCCCTCT 1 chr3:11766689-11766709 ( 3) CTCCCTCT 1 chr18:28070201-28070221 ( 8) CTCTCTCT 1 chr7:99594821-99594841 ( 13) CTCCCTCT 1 chr1:51700064-51700084 ( 3) CTCTCTCT 1 chr17:11901370-11901390 ( 6) CTCTCTCT 1 chr19:14495584-14495604 ( 4) CTCTCTCT 1 chr22:30615877-30615897 ( 7) CTCTCTCT 1 chr5:110090158-110090178 ( 4) CTCCCTTT 1 chr8:121816474-121816494 ( 2) CTCCCTTT 1 chr15:68327291-68327311 ( 4) CTCCCTTT 1 chr7:20324278-20324298 ( 6) CTCTCTTT 1 chr5:138951355-138951375 ( 9) CTTCCTCC 1 chr7:121169671-121169691 ( 6) CTTCCTCC 1 chr1:209928932-209928952 ( 9) CTTCCTTC 1 chr7:49809257-49809277 ( 10) CTTTCTTC 1 chr3:189218930-189218950 ( 5) CTTCCTTC 1 chr12:45366678-45366698 ( 6) CTTCCTTC 1 chr11:102415495-10241551 ( 6) CTTCCTTC 1 chr4:18413694-18413714 ( 9) CTTCCTTC 1 chr10:15476337-15476357 ( 5) CTTCCTTC 1 chr8:129010904-129010924 ( 6) CTTCCTTC 1 chr12:26311175-26311195 ( 6) CTCCCTCC 1 chr18:60722592-60722612 ( 4) CTCCCTCC 1 chr13:103569534-10356955 ( 5) CTCCCTCC 1 chr15:73924509-73924529 ( 2) CTCCCTTC 1 chr12:6542774-6542794 ( 8) CTCCCTTC 1 chr12:91523975-91523995 ( 3) CTCCCTTC 1 chr15:45005179-45005199 ( 3) CTGTCTCT 1 chr14:106044493-10604451 ( 3) CTGTCTCT 1 chr1:100531294-100531314 ( 2) TTTTCTCT 1 chr2:86206212-86206232 ( 10) TTTCCTCT 1 chr11:82869513-82869533 ( 10) TTTTCTTT 1 chr1:31975409-31975429 ( 1) TTTCCTTT 1 chr15:93363421-93363441 ( 3) TTTTCTTT 1 chr4:56263863-56263883 ( 11) TTTCCTTT 1 chr19:3990796-3990816 ( 12) TTTTCTTT 1 chr4:40297219-40297239 ( 2) CTGCCTCC 1 chr19:44763731-44763751 ( 5) CTGCCTCC 1 chr2:216867598-216867618 ( 10) TTCTCTTT 1 chr4:47020115-47020135 ( 11) CTTCTTCT 1 chr17:40335417-40335437 ( 11) CTGCCTTC 1 chr5:133930711-133930731 ( 7) CTTTGTCT 1 chr12:123196182-12319620 ( 1) CTTTTTTT 1 chr2:91780017-91780037 ( 10) TTCCCTCC 1 chr14:53647169-53647189 ( 7) CTCCGTCT 1 chr6:2902785-2902805 ( 1) CTCTGTCT 1 chr19:6556277-6556297 ( 10) CTCTGTCT 1 chr3:47347546-47347566 ( 10) CTCCTTTT 1 chr1:53192740-53192760 ( 11) CTTCCTTG 1 chr17:4902796-4902816 ( 7) ATTTCTCT 1 chr7:38409221-38409241 ( 1) ATTTCTCT 1 chr11:6767491-6767511 ( 12) ATTTCTCT 1 chr12:100536931-10053695 ( 7) CTTCCCTT 1 chr7:95083971-95083991 ( 11) CTCCCTTG 1 chr11:115792912-11579293 ( 10) ATCTCTCT 1 chr5:76940718-76940738 ( 1) CTCTTTTC 1 chr19:49371628-49371648 ( 12) CTGTTTCT 1 chr1:235530338-235530358 ( 8) TTTTTTCT 1 chr15:96900853-96900873 ( 4) TTTTTTCT 1 chr14:75518434-75518454 ( 12) TTGTCTTC 1 chr4:121367506-121367526 ( 1) TTTTTTTT 1 chr2:25352448-25352468 ( 8) TTTTGTTT 1 chrX:106953991-106954011 ( 5) TTTTCTCG 1 chr4:114557311-114557331 ( 12) CTGTGTCC 1 chr16:89041250-89041270 ( 2) CTGTCCCC 1 chr11:64388882-64388902 ( 6) TTTTCCCC 1 chr13:49687329-49687349 ( 1) CTTCTCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTYYCTYT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 6.24129 E= 1.6e-046 -247 166 -1304 -53 -1304 -1304 -1304 186 -1304 47 -103 102 -1304 98 -1304 93 -1304 177 -162 -136 -1304 -234 -1304 179 -1304 105 -1304 86 -1304 31 -262 127 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTYYCTYT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 84 E= 1.6e-046 0.047619 0.761905 0.000000 0.190476 0.000000 0.000000 0.000000 1.000000 0.000000 0.333333 0.107143 0.559524 0.000000 0.476190 0.000000 0.523810 0.000000 0.821429 0.071429 0.107143 0.000000 0.047619 0.000000 0.952381 0.000000 0.500000 0.000000 0.500000 0.000000 0.297619 0.035714 0.666667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTYYCTYT MEME-2 regular expression -------------------------------------------------------------------------------- CT[TC][TC]CT[CT][TC] -------------------------------------------------------------------------------- Time 5.65 secs. ******************************************************************************** ******************************************************************************** MOTIF GARRGAGR MEME-3 width = 8 sites = 31 llr = 214 E-value = 1.0e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GARRGAGR MEME-3 Description -------------------------------------------------------------------------------- Simplified A :8543a35 pos.-specific C ::2::::: probability G a2367:65 matrix T ::::::1: bits 2.2 * 2.0 * * 1.8 * * 1.5 * * Relative 1.3 ** * Entropy 1.1 ** *** * (10.0 bits) 0.9 ** ***** 0.7 ** ***** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAAGGAGG consensus GGAA AA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARRGAGR MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr14:75953152-75953172 1 2.85e-05 . gaaggaga gaaagaaaga chr6:138131260-138131280 9 4.92e-05 gagagaaa gagggaga gaga chr21:26765502-26765522 11 5.86e-05 agaaaggaag gagagagg ga chr19:10539904-10539924 11 6.71e-05 gaaagagagg gacggagg gg chr10:112147508-11214752 11 8.08e-05 gggaaagaaa gaaagaga aa chr19:2592927-2592947 10 1.11e-04 ggaaggaag gaaggaag gac chr6:27124816-27124836 12 1.11e-04 gagaaagaaa gaaggaag g chr6:26382970-26382990 11 1.11e-04 aggaaggaag gaaggaag aa chr1:31264295-31264315 2 1.11e-04 a gagagaga gagaagaAAG chr1:8002099-8002119 2 1.11e-04 a ggaggagg aggaggaaga chr3:152311182-152311202 13 1.11e-04 aggaagagga ggaggagg chr10:85749537-85749557 3 1.11e-04 aa gagagaga gaaagggagg chr1:203723139-203723159 10 1.91e-04 ggaaggaag gaaggaaa gaa chr12:27488701-27488721 1 1.91e-04 . ggaggaga ggggaaagga chr7:130720117-130720137 5 2.28e-04 aaaa gaagaaga agaagaaa chr19:6598545-6598565 2 2.74e-04 a gacagaga ggaagagaca chr11:1866448-1866468 10 2.74e-04 aggcagaga gacagaga cag chr2:102658795-102658815 2 2.74e-04 g gaaaaagg aagaaggaag chr1:200591269-200591289 3 3.33e-04 ta ggcggagg ttgcagtgag chr6:143129571-143129591 1 4.32e-04 . gggagaga tgaagaaagg chr1:58388015-58388035 11 4.32e-04 tagaagaaat gaaggatg tg chr12:27082701-27082721 2 4.32e-04 a gagagaaa gggaagaaag chr3:57984132-57984152 11 4.90e-04 gaggaagaaa gaagaaag aa chr3:58195823-58195843 2 5.41e-04 g gagggatg atgaggatgg chr19:51183210-51183230 8 5.72e-04 acagaga gacaaagg cagag chr12:7284039-7284059 1 6.52e-04 . ggagaaga ccggagatga chr7:92683095-92683115 9 6.52e-04 ggaaggaa gaagaaaa aaca chr7:138796840-138796860 13 8.28e-04 aaggaaggaa gggaaagg chr9:100565574-100565594 12 8.28e-04 cgggagggag gagaaaag g chr19:49978048-49978068 5 1.09e-03 GATG GACAGATG TGAGGGGA chr5:131748130-131748150 13 1.15e-03 ttgggaggct gaggtagg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARRGAGR MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr14:75953152-75953172 2.8e-05 [+3]_12 chr6:138131260-138131280 4.9e-05 8_[+3]_4 chr21:26765502-26765522 5.9e-05 10_[+3]_2 chr19:10539904-10539924 6.7e-05 10_[+3]_2 chr10:112147508-11214752 8.1e-05 10_[+3]_2 chr19:2592927-2592947 0.00011 9_[+3]_3 chr6:27124816-27124836 0.00011 11_[+3]_1 chr6:26382970-26382990 0.00011 10_[+3]_2 chr1:31264295-31264315 0.00011 1_[+3]_11 chr1:8002099-8002119 0.00011 1_[+3]_11 chr3:152311182-152311202 0.00011 12_[+3] chr10:85749537-85749557 0.00011 2_[+3]_10 chr1:203723139-203723159 0.00019 9_[+3]_3 chr12:27488701-27488721 0.00019 [+3]_12 chr7:130720117-130720137 0.00023 4_[+3]_8 chr19:6598545-6598565 0.00027 1_[+3]_11 chr11:1866448-1866468 0.00027 9_[+3]_3 chr2:102658795-102658815 0.00027 1_[+3]_11 chr1:200591269-200591289 0.00033 2_[+3]_10 chr6:143129571-143129591 0.00043 [+3]_12 chr1:58388015-58388035 0.00043 10_[+3]_2 chr12:27082701-27082721 0.00043 1_[+3]_11 chr3:57984132-57984152 0.00049 10_[+3]_2 chr3:58195823-58195843 0.00054 1_[+3]_11 chr19:51183210-51183230 0.00057 7_[+3]_5 chr12:7284039-7284059 0.00065 [+3]_12 chr7:92683095-92683115 0.00065 8_[+3]_4 chr7:138796840-138796860 0.00083 12_[+3] chr9:100565574-100565594 0.00083 11_[+3]_1 chr19:49978048-49978068 0.0011 4_[+3]_8 chr5:131748130-131748150 0.0012 12_[+3] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARRGAGR MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GARRGAGR width=8 seqs=31 chr14:75953152-75953172 ( 1) GAAGGAGA 1 chr6:138131260-138131280 ( 9) GAGGGAGA 1 chr21:26765502-26765522 ( 11) GAGAGAGG 1 chr19:10539904-10539924 ( 11) GACGGAGG 1 chr10:112147508-11214752 ( 11) GAAAGAGA 1 chr19:2592927-2592947 ( 10) GAAGGAAG 1 chr6:27124816-27124836 ( 12) GAAGGAAG 1 chr6:26382970-26382990 ( 11) GAAGGAAG 1 chr1:31264295-31264315 ( 2) GAGAGAGA 1 chr1:8002099-8002119 ( 2) GGAGGAGG 1 chr3:152311182-152311202 ( 13) GGAGGAGG 1 chr10:85749537-85749557 ( 3) GAGAGAGA 1 chr1:203723139-203723159 ( 10) GAAGGAAA 1 chr12:27488701-27488721 ( 1) GGAGGAGA 1 chr7:130720117-130720137 ( 5) GAAGAAGA 1 chr19:6598545-6598565 ( 2) GACAGAGA 1 chr11:1866448-1866468 ( 10) GACAGAGA 1 chr2:102658795-102658815 ( 2) GAAAAAGG 1 chr1:200591269-200591289 ( 3) GGCGGAGG 1 chr6:143129571-143129591 ( 1) GGGAGAGA 1 chr1:58388015-58388035 ( 11) GAAGGATG 1 chr12:27082701-27082721 ( 2) GAGAGAAA 1 chr3:57984132-57984152 ( 11) GAAGAAAG 1 chr3:58195823-58195843 ( 2) GAGGGATG 1 chr19:51183210-51183230 ( 8) GACAAAGG 1 chr12:7284039-7284059 ( 1) GGAGAAGA 1 chr7:92683095-92683115 ( 9) GAAGAAAA 1 chr7:138796840-138796860 ( 13) GGGAAAGG 1 chr9:100565574-100565594 ( 12) GAGAAAAG 1 chr19:49978048-49978068 ( 5) GACAGATG 1 chr5:131748130-131748150 ( 13) GAGGTAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARRGAGR MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.42938 E= 1.0e-002 -1160 -1160 219 -1160 155 -1160 4 -1160 87 -32 56 -1160 66 -1160 141 -1160 -4 -1160 170 -309 192 -1160 -1160 -1160 -4 -1160 156 -151 77 -1160 132 -1160 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARRGAGR MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 31 E= 1.0e-002 0.000000 0.000000 1.000000 0.000000 0.774194 0.000000 0.225806 0.000000 0.483871 0.193548 0.322581 0.000000 0.419355 0.000000 0.580645 0.000000 0.258065 0.000000 0.709677 0.032258 1.000000 0.000000 0.000000 0.000000 0.258065 0.000000 0.645161 0.096774 0.451613 0.000000 0.548387 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARRGAGR MEME-3 regular expression -------------------------------------------------------------------------------- G[AG][AG][GA][GA]A[GA][GA] -------------------------------------------------------------------------------- Time 8.54 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAASAAA MEME-4 width = 8 sites = 12 llr = 99 E-value = 5.5e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAASAAA MEME-4 Description -------------------------------------------------------------------------------- Simplified A 8a88:a9a pos.-specific C ::224::: probability G 2:::6:1: matrix T :::1:::: bits 2.2 2.0 * * * 1.8 * * * 1.5 * *** Relative 1.3 *** *** Entropy 1.1 *** **** (11.9 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAAGAAA consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAASAAA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr17:9950155-9950175 12 2.01e-05 ggaaggaaag aaaagaaa a chr9:138785105-138785125 12 2.01e-05 tgaaagaaag aaaagaaa a chr3:16592984-16593004 13 2.01e-05 agaaagagaa aaaagaaa chr12:94800166-94800186 1 4.22e-05 . aaaacaaa gttcacagta chr12:103353238-10335325 11 7.71e-05 aagaagaaaa aAACGAAA AC chr21:34754625-34754645 4 9.54e-05 aag aacagaaa aagaagaaa chr1:112197890-112197910 11 9.54e-05 aaaaaaaaaC AACAGAAA TT chr17:56418010-56418030 12 1.34e-04 aaaaaaaccc aaaccaaa C chr2:97148092-97148112 1 1.34e-04 . gaaacaaa gaaagagaaa chr16:17352255-17352275 10 1.34e-04 ggaaaggga gaaacaaa cca chr5:150117330-150117350 13 1.91e-04 gagcagaact aaatgaaa chr2:12570664-12570684 4 2.10e-04 gaa aaaacaga agtaaaaac -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAASAAA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:9950155-9950175 2e-05 11_[+4]_1 chr9:138785105-138785125 2e-05 11_[+4]_1 chr3:16592984-16593004 2e-05 12_[+4] chr12:94800166-94800186 4.2e-05 [+4]_12 chr12:103353238-10335325 7.7e-05 10_[+4]_2 chr21:34754625-34754645 9.5e-05 3_[+4]_9 chr1:112197890-112197910 9.5e-05 10_[+4]_2 chr17:56418010-56418030 0.00013 11_[+4]_1 chr2:97148092-97148112 0.00013 [+4]_12 chr16:17352255-17352275 0.00013 9_[+4]_3 chr5:150117330-150117350 0.00019 12_[+4] chr2:12570664-12570684 0.00021 3_[+4]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAASAAA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAASAAA width=8 seqs=12 chr17:9950155-9950175 ( 12) AAAAGAAA 1 chr9:138785105-138785125 ( 12) AAAAGAAA 1 chr3:16592984-16593004 ( 13) AAAAGAAA 1 chr12:94800166-94800186 ( 1) AAAACAAA 1 chr12:103353238-10335325 ( 11) AAACGAAA 1 chr21:34754625-34754645 ( 4) AACAGAAA 1 chr1:112197890-112197910 ( 11) AACAGAAA 1 chr17:56418010-56418030 ( 12) AAACCAAA 1 chr2:97148092-97148112 ( 1) GAAACAAA 1 chr16:17352255-17352275 ( 10) GAAACAAA 1 chr5:150117330-150117350 ( 13) AAATGAAA 1 chr2:12570664-12570684 ( 4) AAAACAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAASAAA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.52481 E= 5.5e+002 165 -1023 -39 -1023 192 -1023 -1023 -1023 165 -53 -1023 -1023 150 -53 -1023 -172 -1023 79 141 -1023 192 -1023 -1023 -1023 179 -1023 -139 -1023 192 -1023 -1023 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAASAAA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 5.5e+002 0.833333 0.000000 0.166667 0.000000 1.000000 0.000000 0.000000 0.000000 0.833333 0.166667 0.000000 0.000000 0.750000 0.166667 0.000000 0.083333 0.000000 0.416667 0.583333 0.000000 1.000000 0.000000 0.000000 0.000000 0.916667 0.000000 0.083333 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAASAAA MEME-4 regular expression -------------------------------------------------------------------------------- AAAA[GC]AAA -------------------------------------------------------------------------------- Time 9.37 secs. ******************************************************************************** ******************************************************************************** MOTIF SVCTGGRG MEME-5 width = 8 sites = 8 llr = 73 E-value = 8.4e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif SVCTGGRG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :3::::5: pos.-specific C 65a::::: probability G 43::aa5a matrix T :::a:::: bits 2.2 ** * 2.0 * ** * 1.8 **** * 1.5 **** * Relative 1.3 **** * Entropy 1.1 * ****** (13.2 bits) 0.9 * ****** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCCTGGAG consensus GA G sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SVCTGGRG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr13:61821959-61821979 10 8.89e-06 atgtggatt ccctgggg gct chr17:74816373-74816393 1 8.89e-06 . CCCTGGGG CACCACAGTG chr2:62964504-62964524 8 1.96e-05 tgggtcc ccctggag ttttt chr5:132143187-132143207 4 1.96e-05 AGT CCCTGGAG CTCCTGCCT chr4:113438232-113438252 13 5.53e-05 AGGGAGAGGA CACTGGGG chr12:56320452-56320472 3 9.31e-05 GG GACTGGGG TAGGGCAGAA chr3:67056137-67056157 7 1.02e-04 caccca ggctggag tgcagt chr6:2902785-2902805 13 1.02e-04 ctgtctgcca ggctggag -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SVCTGGRG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr13:61821959-61821979 8.9e-06 9_[+5]_3 chr17:74816373-74816393 8.9e-06 [+5]_12 chr2:62964504-62964524 2e-05 7_[+5]_5 chr5:132143187-132143207 2e-05 3_[+5]_9 chr4:113438232-113438252 5.5e-05 12_[+5] chr12:56320452-56320472 9.3e-05 2_[+5]_10 chr3:67056137-67056157 0.0001 6_[+5]_6 chr6:2902785-2902805 0.0001 12_[+5] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SVCTGGRG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SVCTGGRG width=8 seqs=8 chr13:61821959-61821979 ( 10) CCCTGGGG 1 chr17:74816373-74816393 ( 1) CCCTGGGG 1 chr2:62964504-62964524 ( 8) CCCTGGAG 1 chr5:132143187-132143207 ( 4) CCCTGGAG 1 chr4:113438232-113438252 ( 13) CACTGGGG 1 chr12:56320452-56320472 ( 3) GACTGGGG 1 chr3:67056137-67056157 ( 7) GGCTGGAG 1 chr6:2902785-2902805 ( 13) GGCTGGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SVCTGGRG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.66267 E= 8.4e+002 -965 137 78 -965 -8 105 19 -965 -965 205 -965 -965 -965 -965 -965 186 -965 -965 219 -965 -965 -965 219 -965 92 -965 119 -965 -965 -965 219 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SVCTGGRG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 8.4e+002 0.000000 0.625000 0.375000 0.000000 0.250000 0.500000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SVCTGGRG MEME-5 regular expression -------------------------------------------------------------------------------- [CG][CAG]CTGG[AG]G -------------------------------------------------------------------------------- Time 9.96 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:6556277-6556297 3.92e-01 20 chr14:75953152-75953172 3.07e-06 [+3(2.85e-05)]_[+1(5.54e-05)]_4 chr2:5163090-5163110 1.00e+00 20 chr8:129010904-129010924 3.21e-01 20 chr2:102658795-102658815 1.26e-04 20 chr22:30615877-30615897 1.83e-01 12_[+2(9.01e-05)] chr2:86206212-86206232 4.09e-01 20 chr7:121169671-121169691 2.76e-01 20 chr19:14495584-14495604 2.00e-01 20 chr5:76940718-76940738 5.27e-01 20 chr12:91523975-91523995 2.57e-01 20 chr6:161459105-161459125 1.93e-01 5_[+2(9.01e-05)]_7 chr1:200591269-200591289 6.31e-02 20 chr10:15476337-15476357 3.21e-01 20 chr11:6767491-6767511 3.05e-01 20 chr7:38409221-38409241 6.28e-01 20 chr16:17352255-17352275 7.97e-05 20 chr19:3990796-3990816 3.89e-01 20 chr16:70906875-70906895 1.00e+00 20 chr3:16592984-16593004 3.88e-06 3_[+3(8.08e-05)]_1_[+4(2.01e-05)] chr19:44763731-44763751 9.68e-02 20 chr19:49978048-49978068 8.97e-02 20 chr12:69648160-69648180 8.09e-01 20 chr2:216867598-216867618 2.87e-01 20 chrX:148586249-148586269 2.11e-05 9_[+3(1.71e-05)]_3 chr15:45027516-45027536 7.15e-06 8_[+1(5.54e-05)]_4 chr4:56263863-56263883 4.30e-01 20 chr6:111744679-111744699 2.14e-05 3_[+4(2.01e-05)]_9 chr13:103569534-10356955 3.18e-01 20 chr11:128423376-12842339 9.92e-01 20 chr1:145018369-145018389 1.31e-02 20 chr11:35293756-35293776 1.52e-02 20 chr7:130720117-130720137 2.80e-04 20 chr17:11901370-11901390 2.33e-01 20 chr4:18413694-18413714 3.01e-01 20 chr18:51675206-51675226 1.48e-02 20 chr10:64539794-64539814 5.92e-01 20 chr11:102415495-10241551 3.21e-01 20 chr6:2902785-2902805 4.88e-03 20 chr11:1866448-1866468 7.70e-04 20 chr12:54752482-54752502 7.75e-02 11_[+2(4.20e-05)]_1 chr11:35159721-35159741 8.72e-02 20 chr15:93363421-93363441 4.30e-01 20 chr7:20324278-20324298 2.68e-01 20 chr9:128394303-128394323 4.68e-01 20 chr19:35891480-35891500 1.93e-04 20 chr14:53647169-53647189 3.65e-01 20 chr6:150958623-150958643 8.37e-01 20 chr2:98443058-98443078 2.69e-03 20 chrX:1363194-1363214 1.34e-03 20 chr12:27588522-27588542 1.31e-01 2_[+2(4.20e-05)]_10 chr19:35949241-35949261 4.00e-01 20 chr15:42924697-42924717 1.83e-01 7_[+2(9.01e-05)]_5 chr2:91780017-91780037 5.33e-01 20 chr1:110091799-110091819 4.41e-01 20 chr17:40335417-40335437 3.36e-01 20 chr16:21962728-21962748 1.00e+00 20 chr7:92683095-92683115 3.37e-05 [+1(2.51e-05)]_12 chr21:26765502-26765522 1.25e-05 6_[+3(2.85e-05)]_6 chr12:46609810-46609830 9.40e-01 20 chr14:106044493-10604451 3.26e-01 20 chr4:38735484-38735504 8.56e-01 20 chr6:40974238-40974258 3.37e-05 4_[+4(2.01e-05)]_8 chr19:13268295-13268315 1.97e-01 3_[+2(9.01e-05)]_9 chr13:77728581-77728601 1.72e-02 20 chr16:13484911-13484931 1.88e-02 20 chr3:58195823-58195843 1.60e-01 20 chr20:44740404-44740424 1.96e-05 5_[+1(5.54e-05)]_7 chr1:51700064-51700084 2.33e-01 20 chr12:6542774-6542794 3.36e-01 20 chr7:99594821-99594841 2.18e-01 20 chr9:126898448-126898468 9.36e-01 20 chr16:31880426-31880446 7.61e-01 20 chr10:85749537-85749557 1.11e-04 20 chr5:133930711-133930731 4.57e-01 20 chr19:10539904-10539924 6.15e-06 [+3(8.08e-05)]_2_[+3(6.71e-05)]_2 chr1:160518934-160518954 2.35e-03 20 chr11:117857688-11785770 7.59e-01 20 chr11:341152-341172 6.53e-05 1_[+1(2.51e-05)]_2_[+1(7.61e-05)]_1 chr10:91467305-91467325 1.83e-01 [+2(9.01e-05)]_12 chr9:100565574-100565594 1.38e-04 4_[+3(1.71e-05)]_8 chr4:40297219-40297239 3.72e-01 20 chr3:152311182-152311202 2.59e-03 20 chr1:8002099-8002119 3.87e-03 20 chr1:144536066-144536086 9.86e-01 20 chr3:49591536-49591556 7.41e-01 20 chr9:134377903-134377923 3.38e-02 20 chr6:44149648-44149668 9.73e-01 20 chr19:51183210-51183230 1.03e-02 20 chr12:27082701-27082721 1.10e-04 10_[+1(2.51e-05)]_2 chr18:28070201-28070221 2.24e-01 20 chr14:106051853-10605187 9.91e-01 20 chr19:49947451-49947471 1.12e-01 5_[+2(4.20e-05)]_7 chr2:128588285-128588305 9.92e-01 20 chr7:8213659-8213679 1.98e-01 20 chr13:74561899-74561919 2.47e-03 20 chr17:8828566-8828586 6.20e-01 20 chr1:112197890-112197910 4.26e-03 10_[+4(9.54e-05)]_2 chr12:7284039-7284059 1.47e-02 20 chr3:47347546-47347566 5.81e-01 20 chr7:95064826-95064846 8.27e-01 20 chr10:78937112-78937132 1.73e-01 8_[+2(9.01e-05)]_4 chr6:32144228-32144248 8.18e-01 20 chr1:31975409-31975429 4.09e-01 20 chr6:25041945-25041965 3.75e-02 20 chr3:11766689-11766709 2.18e-01 20 chr8:143813046-143813066 8.54e-01 20 chr17:4902796-4902816 6.16e-01 20 chr15:68327291-68327311 2.48e-01 20 chr14:75518434-75518454 7.28e-01 20 chr16:90074419-90074439 4.35e-01 20 chr18:60722592-60722612 1.11e-01 20 chr18:49282651-49282671 4.29e-01 20 chr4:114559628-114559648 8.68e-01 20 chr2:25352448-25352468 7.56e-01 20 chr11:94283796-94283816 7.54e-02 20 chr20:25175816-25175836 1.39e-01 20 chr9:5600462-5600482 2.92e-01 20 chr12:123196182-12319620 2.54e-02 20 chr3:31550712-31550732 2.74e-04 1_[+1(2.51e-05)]_[+1(2.51e-05)]_3 chr1:58388015-58388035 3.15e-04 20 chr12:96896892-96896912 1.27e-01 11_[+2(4.20e-05)]_1 chr16:12083716-12083736 8.27e-03 20 chr1:31264295-31264315 1.28e-04 20 chr12:103353238-10335325 8.07e-05 10_[+4(7.71e-05)]_2 chr10:115438716-11543873 2.01e-01 20 chr10:101698847-10169886 5.79e-04 20 chr12:26311175-26311195 3.18e-01 20 chr12:100536931-10053695 6.37e-01 20 chr20:1722213-1722233 1.83e-01 10_[+2(9.01e-05)]_2 chr21:34754625-34754645 6.13e-05 3_[+4(9.54e-05)]_9 chr16:85190759-85190779 8.84e-01 20 chr6:126317584-126317604 3.13e-01 20 chr9:126852585-126852605 1.96e-01 1_[+2(9.01e-05)]_11 chr1:53192740-53192760 4.81e-01 20 chr6:26382970-26382990 2.74e-04 1_[+1(2.51e-05)]_[+1(2.51e-05)]_3 chr4:114557311-114557331 5.10e-01 20 chr14:75535336-75535356 5.97e-02 20 chr19:49371628-49371648 7.06e-01 20 chr5:132143187-132143207 3.82e-02 3_[+5(1.96e-05)]_9 chr20:48236382-48236402 1.26e-01 20 chr21:15470450-15470470 1.00e+00 20 chr4:103546545-103546565 1.83e-01 11_[+2(9.01e-05)]_1 chr1:28470812-28470832 7.69e-01 20 chr1:21672582-21672602 9.64e-01 20 chr10:90746504-90746524 5.93e-03 20 chr11:82869513-82869533 3.15e-01 20 chr5:131748130-131748150 3.80e-02 20 chr5:133892624-133892644 6.83e-01 20 chr12:45366678-45366698 3.21e-01 20 chr3:189218930-189218950 3.15e-01 20 chr7:99967408-99967428 5.10e-01 20 chr1:168993752-168993772 7.15e-06 6_[+1(5.54e-05)]_6 chr6:27124816-27124836 7.36e-06 3_[+1(5.54e-05)]_9 chr15:94782175-94782195 9.57e-01 20 chr3:67056137-67056157 4.68e-02 20 chr9:138785105-138785125 8.59e-06 2_[+1(5.54e-05)]_1_[+4(2.01e-05)]_1 chr1:16941104-16941124 9.08e-01 20 chr1:235107967-235107987 7.08e-01 20 chr17:9950155-9950175 1.94e-06 1_[+1(2.51e-05)]_2_[+4(2.01e-05)]_1 chr10:112147508-11214752 7.15e-06 2_[+1(5.54e-05)]_[+3(8.08e-05)]_2 chr4:47020115-47020135 4.40e-01 20 chr2:86227105-86227125 8.25e-01 20 chr7:49809257-49809277 3.01e-01 20 chrX:3618649-3618669 7.18e-01 20 chr12:53714870-53714890 7.03e-01 20 chr16:75413106-75413126 2.55e-02 20 chr7:104850037-104850057 7.84e-05 8_[+1(5.54e-05)]_4 chr12:8235153-8235173 8.84e-01 20 chr8:23366560-23366580 6.12e-01 20 chr5:148799553-148799573 9.87e-01 20 chr7:125209282-125209302 1.83e-01 12_[+2(9.01e-05)] chr12:27488701-27488721 1.18e-03 20 chr6:33138092-33138112 8.08e-01 20 chr19:51323961-51323981 4.39e-02 20 chr10:120950549-12095056 7.73e-02 20 chr2:114458247-114458267 1.00e+00 20 chr6:157971423-157971443 8.37e-01 20 chr2:97148092-97148112 1.83e-05 8_[+3(8.08e-05)]_4 chr20:6625890-6625910 2.18e-01 20 chr5:138951355-138951375 2.76e-01 20 chr11:85930045-85930065 9.63e-01 20 chr17:38136247-38136267 6.09e-01 20 chr22:25966102-25966122 5.58e-02 20 chr19:3369182-3369202 7.32e-01 20 chr15:96900853-96900873 7.28e-01 20 chr15:99496303-99496323 2.13e-01 20 chr7:138796840-138796860 5.33e-05 4_[+1(2.51e-05)]_8 chr16:57075133-57075153 2.33e-01 20 chr15:73924509-73924529 3.21e-01 20 chr2:199161771-199161791 4.94e-01 20 chr6:57181151-57181171 5.73e-01 20 chr15:45005179-45005199 3.39e-04 20 chr10:81947928-81947948 7.28e-01 20 chr1:235530338-235530358 7.29e-01 20 chr19:45754219-45754239 8.23e-01 20 chr7:32540332-32540352 9.96e-01 20 chr1:203723139-203723159 4.44e-05 [+1(2.51e-05)]_[+1(2.51e-05)]_4 chr9:113776321-113776341 9.90e-01 20 chr19:47781082-47781102 3.84e-01 20 chr3:57984132-57984152 6.09e-05 2_[+1(2.51e-05)]_10 chr19:4229974-4229994 9.89e-01 20 chr2:58218075-58218095 3.83e-02 20 chr2:12570664-12570684 2.57e-03 20 chr7:26006279-26006299 6.83e-04 6_[+3(4.92e-05)]_6 chr19:48833177-48833197 9.89e-01 20 chr14:93674537-93674557 2.78e-03 20 chr17:74816373-74816393 1.72e-02 [+5(8.89e-06)]_12 chr21:39617523-39617543 1.06e-04 9_[+1(2.51e-05)]_3 chr13:29181563-29181583 6.15e-01 20 chr2:62964504-62964524 3.83e-02 7_[+5(1.96e-05)]_5 chr19:2592927-2592947 2.74e-04 [+1(2.51e-05)]_[+1(2.51e-05)]_4 chr6:143129571-143129591 8.63e-04 20 chr1:226295610-226295630 4.92e-01 20 chr8:121816474-121816494 2.01e-01 20 chr5:150117330-150117350 6.69e-03 20 chr16:89031232-89031252 9.94e-01 20 chr6:84569726-84569746 8.56e-01 20 chr9:37036137-37036157 9.87e-01 20 chr12:94800166-94800186 1.74e-02 [+4(4.22e-05)]_12 chrX:106953991-106954011 7.23e-01 20 chr19:6598545-6598565 9.02e-05 9_[+1(7.61e-05)]_3 chr6:138131260-138131280 1.04e-04 4_[+3(3.98e-05)]_8 chr1:202128840-202128860 7.56e-04 [+3(5.86e-05)]_1_[+3(5.86e-05)]_3 chr13:49687329-49687349 7.99e-01 20 chr15:54375914-54375934 3.00e-01 20 chr1:100531294-100531314 3.86e-01 20 chr4:121367506-121367526 7.43e-01 20 chr17:39833069-39833089 8.85e-01 20 chr15:66649436-66649456 2.30e-01 20 chr4:184328870-184328890 1.30e-01 9_[+2(4.20e-05)]_3 chr16:89041250-89041270 6.86e-03 6_[+5(8.89e-06)]_6 chr3:99667570-99667590 3.95e-05 5_[+1(2.51e-05)]_7 chr11:115792912-11579293 3.87e-02 20 chr7:95083971-95083991 7.36e-02 20 chr17:56418010-56418030 6.15e-03 20 chr1:32423860-32423880 1.83e-01 9_[+2(9.01e-05)]_3 chr14:106034616-10603463 9.72e-01 20 chr9:6717312-6717332 2.77e-01 20 chr1:27951127-27951147 6.45e-01 20 chr12:56320452-56320472 5.26e-03 2_[+5(9.31e-05)]_10 chr5:110090158-110090178 2.51e-01 20 chr1:209928932-209928952 3.09e-01 20 chr11:64388882-64388902 2.98e-01 20 chr4:113438232-113438252 6.26e-05 12_[+5(5.53e-05)] chr4:83380078-83380098 1.12e-04 5_[+1(2.51e-05)]_7 chr2:30440566-30440586 1.87e-02 20 chr1:31955663-31955683 3.29e-03 20 chr13:61821959-61821979 1.33e-02 9_[+5(8.89e-06)]_3 chr14:95603455-95603475 2.77e-03 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n10.farnam.hpc.yale.internal ********************************************************************************