******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/WRNIP1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr9:98269865-98269885 1.0000 20 chr6:338989-339009 1.0000 20 chr1:209527849-209527869 1.0000 20 chr2:97426443-97426463 1.0000 20 chr1:155242508-155242528 1.0000 20 chr2:26828529-26828549 1.0000 20 chr14:22981225-22981245 1.0000 20 chr14:24631353-24631373 1.0000 20 chr10:11215067-11215087 1.0000 20 chr15:65809359-65809379 1.0000 20 chr3:69134849-69134869 1.0000 20 chr16:10972320-10972340 1.0000 20 chr14:22990026-22990046 1.0000 20 chr10:23001939-23001959 1.0000 20 chr1:93298505-93298525 1.0000 20 chr21:26790600-26790620 1.0000 20 chr2:200324349-200324369 1.0000 20 chr6:90057777-90057797 1.0000 20 chr6:330825-330845 1.0000 20 chr12:12872094-12872114 1.0000 20 chr4:38780403-38780423 1.0000 20 chr10:63662046-63662066 1.0000 20 chr19:44029853-44029873 1.0000 20 chr16:87985962-87985982 1.0000 20 chr10:97049736-97049756 1.0000 20 chr9:89563515-89563535 1.0000 20 chr1:25288499-25288519 1.0000 20 chr8:72755640-72755660 1.0000 20 chr3:119274937-119274957 1.0000 20 chr20:49127858-49127878 1.0000 20 chr9:1005250-1005270 1.0000 20 chr1:154841166-154841186 1.0000 20 chr5:142730489-142730509 1.0000 20 chr10:81005650-81005670 1.0000 20 chr18:60981670-60981690 1.0000 20 chr2:46843497-46843517 1.0000 20 chr1:38396346-38396366 1.0000 20 chr19:44283831-44283851 1.0000 20 chr1:234739765-234739785 1.0000 20 chr11:121327898-12132791 1.0000 20 chr17:76710622-76710642 1.0000 20 chr1:234741830-234741850 1.0000 20 chr2:198170907-198170927 1.0000 20 chr1:203595783-203595803 1.0000 20 chr7:155091288-155091308 1.0000 20 chr21:34777694-34777714 1.0000 20 chr2:57948136-57948156 1.0000 20 chr1:156738862-156738882 1.0000 20 chr1:207994987-207995007 1.0000 20 chr5:139031342-139031362 1.0000 20 chr4:83294550-83294570 1.0000 20 chr6:32159978-32159998 1.0000 20 chr19:42758400-42758420 1.0000 20 chr6:41673275-41673295 1.0000 20 chr2:64868708-64868728 1.0000 20 chr2:11894691-11894711 1.0000 20 chr4:40211963-40211983 1.0000 20 chr3:9835203-9835223 1.0000 20 chr7:91874586-91874606 1.0000 20 chr4:40204354-40204374 1.0000 20 chr2:158289156-158289176 1.0000 20 chr19:56168237-56168257 1.0000 20 chr14:89884377-89884397 1.0000 20 chr1:160677221-160677241 1.0000 20 chr3:194305102-194305122 1.0000 20 chr12:92530170-92530190 1.0000 20 chr16:2480527-2480547 1.0000 20 chr1:203275610-203275630 1.0000 20 chr7:128809936-128809956 1.0000 20 chr14:22977923-22977943 1.0000 20 chr4:154415142-154415162 1.0000 20 chr2:231786731-231786751 1.0000 20 chr1:160599773-160599793 1.0000 20 chr12:8761723-8761743 1.0000 20 chr5:95154254-95154274 1.0000 20 chr1:32647311-32647331 1.0000 20 chr3:52720363-52720383 1.0000 20 chr3:47006990-47007010 1.0000 20 chr5:156536969-156536989 1.0000 20 chr4:148721603-148721623 1.0000 20 chr14:100532017-10053203 1.0000 20 chr11:4115437-4115457 1.0000 20 chr21:45206575-45206595 1.0000 20 chr13:30168632-30168652 1.0000 20 chr18:56201889-56201909 1.0000 20 chr17:76764585-76764605 1.0000 20 chr11:62493317-62493337 1.0000 20 chr3:61222532-61222552 1.0000 20 chr7:104655266-104655286 1.0000 20 chr12:12873126-12873146 1.0000 20 chr9:3527056-3527076 1.0000 20 chr17:78170052-78170072 1.0000 20 chr10:11279273-11279293 1.0000 20 chr2:88924033-88924053 1.0000 20 chr7:150434508-150434528 1.0000 20 chr12:102872541-10287256 1.0000 20 chr22:27006778-27006798 1.0000 20 chr1:37941658-37941678 1.0000 20 chr11:62648217-62648237 1.0000 20 chr6:70576770-70576790 1.0000 20 chr19:49149784-49149804 1.0000 20 chr12:11916647-11916667 1.0000 20 chr11:119623691-11962371 1.0000 20 chr1:154580082-154580102 1.0000 20 chr1:36625581-36625601 1.0000 20 chr12:8179808-8179828 1.0000 20 chr4:185391760-185391780 1.0000 20 chr5:156263048-156263068 1.0000 20 chr18:56205090-56205110 1.0000 20 chr14:22951335-22951355 1.0000 20 chr9:132785946-132785966 1.0000 20 chr16:4556604-4556624 1.0000 20 chr9:117374739-117374759 1.0000 20 chr12:13515384-13515404 1.0000 20 chr12:12867623-12867643 1.0000 20 chr12:54675151-54675171 1.0000 20 chr1:221899363-221899383 1.0000 20 chr6:44040875-44040895 1.0000 20 chr8:28241849-28241869 1.0000 20 chr19:5288113-5288133 1.0000 20 chr14:53616868-53616888 1.0000 20 chr3:111842451-111842471 1.0000 20 chr1:19803733-19803753 1.0000 20 chr1:212629394-212629414 1.0000 20 chr8:48426520-48426540 1.0000 20 chr21:45663352-45663372 1.0000 20 chr7:1397273-1397293 1.0000 20 chr11:35165583-35165603 1.0000 20 chr1:116921892-116921912 1.0000 20 chr6:24719730-24719750 1.0000 20 chr17:48241333-48241353 1.0000 20 chr12:121476945-12147696 1.0000 20 chr9:132766633-132766653 1.0000 20 chr19:16189450-16189470 1.0000 20 chr7:8010415-8010435 1.0000 20 chr3:16555747-16555767 1.0000 20 chr18:9137907-9137927 1.0000 20 chr2:214014983-214015003 1.0000 20 chr6:130342370-130342390 1.0000 20 chr11:120100769-12010078 1.0000 20 chr12:31472895-31472915 1.0000 20 chr19:10342382-10342402 1.0000 20 chr6:33043174-33043194 1.0000 20 chr3:112214795-112214815 1.0000 20 chr16:4364401-4364421 1.0000 20 chr21:26793885-26793905 1.0000 20 chr12:48136168-48136188 1.0000 20 chr19:58899154-58899174 1.0000 20 chr5:150459572-150459592 1.0000 20 chr5:107978188-107978208 1.0000 20 chr2:65150423-65150443 1.0000 20 chr1:150337746-150337766 1.0000 20 chr10:11222120-11222140 1.0000 20 chr10:94000428-94000448 1.0000 20 chr3:49057641-49057661 1.0000 20 chr7:12250513-12250533 1.0000 20 chr6:13432248-13432268 1.0000 20 chr15:80269820-80269840 1.0000 20 chr22:29602664-29602684 1.0000 20 chr1:25361362-25361382 1.0000 20 chr2:55845294-55845314 1.0000 20 chr21:45206775-45206795 1.0000 20 chr10:106098381-10609840 1.0000 20 chr1:117101989-117102009 1.0000 20 chr6:299227-299247 1.0000 20 chr8:72754348-72754368 1.0000 20 chr9:136287009-136287029 1.0000 20 chr6:32408523-32408543 1.0000 20 chr10:97625123-97625143 1.0000 20 chr1:153930491-153930511 1.0000 20 chr3:5027754-5027774 1.0000 20 chr19:14628180-14628200 1.0000 20 chr7:134853234-134853254 1.0000 20 chr6:131520937-131520957 1.0000 20 chr2:238877281-238877301 1.0000 20 chr15:75162145-75162165 1.0000 20 chr2:238602480-238602500 1.0000 20 chr8:52438804-52438824 1.0000 20 chr12:11912732-11912752 1.0000 20 chr2:113642680-113642700 1.0000 20 chr4:152021259-152021279 1.0000 20 chr12:121108665-12110868 1.0000 20 chr1:200836373-200836393 1.0000 20 chr4:40195456-40195476 1.0000 20 chr18:10482966-10482986 1.0000 20 chr9:126403446-126403466 1.0000 20 chr6:43276583-43276603 1.0000 20 chr12:12870220-12870240 1.0000 20 chr17:25905844-25905864 1.0000 20 chr2:62427714-62427734 1.0000 20 chr5:142587345-142587365 1.0000 20 chr1:212851716-212851736 1.0000 20 chr12:68617139-68617159 1.0000 20 chr11:102300794-10230081 1.0000 20 chr2:54806438-54806458 1.0000 20 chr16:71842237-71842257 1.0000 20 chr2:68596002-68596022 1.0000 20 chr3:111848335-111848355 1.0000 20 chr3:101571981-101572001 1.0000 20 chr14:75987890-75987910 1.0000 20 chr4:183839102-183839122 1.0000 20 chr9:5608766-5608786 1.0000 20 chr11:192183-192203 1.0000 20 chr16:31129556-31129576 1.0000 20 chr6:32822444-32822464 1.0000 20 chr2:188313011-188313031 1.0000 20 chr2:68592602-68592622 1.0000 20 chr15:69084174-69084194 1.0000 20 chr11:3880746-3880766 1.0000 20 chr1:204332934-204332954 1.0000 20 chr5:150457727-150457747 1.0000 20 chr16:8892189-8892209 1.0000 20 chr1:93428126-93428146 1.0000 20 chr17:73341655-73341675 1.0000 20 chr7:7609049-7609069 1.0000 20 chr8:101456485-101456505 1.0000 20 chr2:64752172-64752192 1.0000 20 chr6:151645533-151645553 1.0000 20 chr14:60717301-60717321 1.0000 20 chr11:130304654-13030467 1.0000 20 chr3:186743590-186743610 1.0000 20 chr7:137670140-137670160 1.0000 20 chr6:402151-402171 1.0000 20 chr9:99176130-99176150 1.0000 20 chr9:112839274-112839294 1.0000 20 chr17:57917255-57917275 1.0000 20 chr2:30934635-30934655 1.0000 20 chr11:3859151-3859171 1.0000 20 chr12:12735327-12735347 1.0000 20 chr6:34954715-34954735 1.0000 20 chr20:37439030-37439050 1.0000 20 chr1:32014752-32014772 1.0000 20 chr5:148930388-148930408 1.0000 20 chr12:54671933-54671953 1.0000 20 chr3:122398245-122398265 1.0000 20 chr2:69952021-69952041 1.0000 20 chr16:89253488-89253508 1.0000 20 chr11:36768784-36768804 1.0000 20 chr21:26935975-26935995 1.0000 20 chr17:73389689-73389709 1.0000 20 chr8:11357102-11357122 1.0000 20 chr2:160570511-160570531 1.0000 20 chr2:242254254-242254274 1.0000 20 chr18:20938632-20938652 1.0000 20 chr10:120969077-12096909 1.0000 20 chr9:19926199-19926219 1.0000 20 chr6:24666665-24666685 1.0000 20 chr3:121793572-121793592 1.0000 20 chr3:49131917-49131937 1.0000 20 chr2:31359666-31359686 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_WRNIP1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/WRNIP1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.242 C 0.264 G 0.258 T 0.236 Background letter frequencies (from file dataset with add-one prior applied): A 0.242 C 0.264 G 0.258 T 0.236 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GTTTCCTG MEME-1 width = 8 sites = 8 llr = 75 E-value = 1.2e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTTTCCTG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::1::3: pos.-specific C ::1:aa:1 probability G a::::::9 matrix T :a99::8: bits 2.1 * 1.9 ** ** 1.7 ** ** 1.5 ****** * Relative 1.2 ******** Entropy 1.0 ******** (13.6 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTTTCCTG consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTTCCTG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr14:60717301-60717321 3 1.44e-05 AA GTTTCCTG CTCATTGGAA chr10:11222120-11222140 5 1.44e-05 GTGC GTTTCCTG GTTTCGGT chr21:45663352-45663372 12 1.44e-05 CCTTTGGGAA GTTTCCTG T chr16:8892189-8892209 12 2.91e-05 TTAAAAacag gtttccag g chr7:150434508-150434528 3 2.91e-05 CA GTTTCCAG CCAACACCAG chr2:242254254-242254274 6 5.86e-05 GAAGT GTTTCCTC TAAGCGG chr9:3527056-3527076 10 5.86e-05 CCGGATCCT GTTACCTG CCG chr3:5027754-5027774 1 7.47e-05 . GTCTCCTG ATGGGCCAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTTCCTG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr14:60717301-60717321 1.4e-05 2_[+1]_10 chr10:11222120-11222140 1.4e-05 4_[+1]_8 chr21:45663352-45663372 1.4e-05 11_[+1]_1 chr16:8892189-8892209 2.9e-05 11_[+1]_1 chr7:150434508-150434528 2.9e-05 2_[+1]_10 chr2:242254254-242254274 5.9e-05 5_[+1]_7 chr9:3527056-3527076 5.9e-05 9_[+1]_3 chr3:5027754-5027774 7.5e-05 [+1]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTTCCTG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTTTCCTG width=8 seqs=8 chr14:60717301-60717321 ( 3) GTTTCCTG 1 chr10:11222120-11222140 ( 5) GTTTCCTG 1 chr21:45663352-45663372 ( 12) GTTTCCTG 1 chr16:8892189-8892209 ( 12) GTTTCCAG 1 chr7:150434508-150434528 ( 3) GTTTCCAG 1 chr2:242254254-242254274 ( 6) GTTTCCTC 1 chr9:3527056-3527076 ( 10) GTTACCTG 1 chr3:5027754-5027774 ( 1) GTCTCCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTTCCTG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.40106 E= 1.2e+002 -965 -965 195 -965 -965 -965 -965 208 -965 -108 -965 189 -95 -965 -965 189 -965 192 -965 -965 -965 192 -965 -965 5 -965 -965 167 -965 -108 176 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTTCCTG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 1.2e+002 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.125000 0.000000 0.875000 0.125000 0.000000 0.000000 0.875000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.000000 0.000000 0.750000 0.000000 0.125000 0.875000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTTCCTG MEME-1 regular expression -------------------------------------------------------------------------------- GTTTCC[TA]G -------------------------------------------------------------------------------- Time 5.32 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGSMWGR MEME-2 width = 8 sites = 22 llr = 158 E-value = 4.8e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGSMWGR MEME-2 Description -------------------------------------------------------------------------------- Simplified A :3::54:3 pos.-specific C a::55::1 probability G ::a5::a5 matrix T :7:::6:: bits 2.1 1.9 * * * 1.7 * * * 1.5 * * * Relative 1.2 *** * Entropy 1.0 **** ** (10.4 bits) 0.8 ******* 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTGCCTGG consensus A GAA A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGSMWGR MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:12735327-12735347 7 3.37e-05 ttctAC CTGCATGG CCTTTG chr12:31472895-31472915 5 3.37e-05 CCCT CTGCATGG CCCTCCAT chr7:91874586-91874606 13 3.37e-05 CGTAATCACT CTGCCTGG chr6:90057777-90057797 3 3.37e-05 TG CTGCCTGG CAACCGGGCT chr4:183839102-183839122 10 6.67e-05 TTTCACACA CTGGATGG GGC chr2:30934635-30934655 7 1.01e-04 gggaaa ctgcaagg tatagc chr4:40204354-40204374 4 1.01e-04 AGA CTGCAAGG ACTGAGAAA chr1:160599773-160599793 7 1.67e-04 AGCTCA CTGGCAGG CGTCAG chr15:80269820-80269840 8 1.98e-04 AGCCACC CTGGCTGA TGAGT chr6:44040875-44040895 7 1.98e-04 CAGGAC CTGGCTGA CTGTAC chr19:16189450-16189470 12 2.65e-04 AAATGGCCCT CAGCCTGG A chr2:160570511-160570531 7 3.30e-04 TGCCAC CTGGAAGA GGGCTA chr4:40195456-40195476 5 3.30e-04 TTTC CAGGATGG GGTGGGAC chr11:102300794-10230081 1 3.98e-04 . CAGCATGA GTACCTTTTC chr4:40211963-40211983 11 4.67e-04 CTCAATAAGA CTGCCTGC CA chr14:24631353-24631373 8 4.67e-04 ATGGCAT CAGGCAGG GCACG chr9:1005250-1005270 10 4.99e-04 aatcctaac caggctga tgg chr12:13515384-13515404 6 5.66e-04 gggca cagccaga gctggtt chr10:11215067-11215087 13 5.66e-04 TATTTGCAGC CAGCAAGA chr16:31129556-31129576 10 6.68e-04 CATTTGTCC CTGGCAGC CAT chr4:185391760-185391780 8 6.68e-04 cttgaac ctggaagc agagg chr6:299227-299247 10 7.56e-04 GCTCAGCTC CTGCGTGG CCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGSMWGR MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:12735327-12735347 3.4e-05 6_[+2]_6 chr12:31472895-31472915 3.4e-05 4_[+2]_8 chr7:91874586-91874606 3.4e-05 12_[+2] chr6:90057777-90057797 3.4e-05 2_[+2]_10 chr4:183839102-183839122 6.7e-05 9_[+2]_3 chr2:30934635-30934655 0.0001 6_[+2]_6 chr4:40204354-40204374 0.0001 3_[+2]_9 chr1:160599773-160599793 0.00017 6_[+2]_6 chr15:80269820-80269840 0.0002 7_[+2]_5 chr6:44040875-44040895 0.0002 6_[+2]_6 chr19:16189450-16189470 0.00026 11_[+2]_1 chr2:160570511-160570531 0.00033 6_[+2]_6 chr4:40195456-40195476 0.00033 4_[+2]_8 chr11:102300794-10230081 0.0004 [+2]_12 chr4:40211963-40211983 0.00047 10_[+2]_2 chr14:24631353-24631373 0.00047 7_[+2]_5 chr9:1005250-1005270 0.0005 9_[+2]_3 chr12:13515384-13515404 0.00057 5_[+2]_7 chr10:11215067-11215087 0.00057 12_[+2] chr16:31129556-31129576 0.00067 9_[+2]_3 chr4:185391760-185391780 0.00067 7_[+2]_5 chr6:299227-299247 0.00076 9_[+2]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGSMWGR MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGSMWGR width=8 seqs=22 chr12:12735327-12735347 ( 7) CTGCATGG 1 chr12:31472895-31472915 ( 5) CTGCATGG 1 chr7:91874586-91874606 ( 13) CTGCCTGG 1 chr6:90057777-90057797 ( 3) CTGCCTGG 1 chr4:183839102-183839122 ( 10) CTGGATGG 1 chr2:30934635-30934655 ( 7) CTGCAAGG 1 chr4:40204354-40204374 ( 4) CTGCAAGG 1 chr1:160599773-160599793 ( 7) CTGGCAGG 1 chr15:80269820-80269840 ( 8) CTGGCTGA 1 chr6:44040875-44040895 ( 7) CTGGCTGA 1 chr19:16189450-16189470 ( 12) CAGCCTGG 1 chr2:160570511-160570531 ( 7) CTGGAAGA 1 chr4:40195456-40195476 ( 5) CAGGATGG 1 chr11:102300794-10230081 ( 1) CAGCATGA 1 chr4:40211963-40211983 ( 11) CTGCCTGC 1 chr14:24631353-24631373 ( 8) CAGGCAGG 1 chr9:1005250-1005270 ( 10) CAGGCTGA 1 chr12:13515384-13515404 ( 6) CAGCCAGA 1 chr10:11215067-11215087 ( 13) CAGCAAGA 1 chr16:31129556-31129576 ( 10) CTGGCAGC 1 chr4:185391760-185391780 ( 8) CTGGAAGC 1 chr6:299227-299247 ( 10) CTGCGTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGSMWGR MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.22846 E= 4.8e+002 -1110 192 -1110 -1110 39 -1110 -1110 153 -1110 -1110 195 -1110 -1110 105 82 -1110 91 92 -250 -1110 76 -1110 -1110 132 -1110 -1110 195 -1110 39 -95 108 -1110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGSMWGR MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 4.8e+002 0.000000 1.000000 0.000000 0.000000 0.318182 0.000000 0.000000 0.681818 0.000000 0.000000 1.000000 0.000000 0.000000 0.545455 0.454545 0.000000 0.454545 0.500000 0.045455 0.000000 0.409091 0.000000 0.000000 0.590909 0.000000 0.000000 1.000000 0.000000 0.318182 0.136364 0.545455 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGSMWGR MEME-2 regular expression -------------------------------------------------------------------------------- C[TA]G[CG][CA][TA]G[GA] -------------------------------------------------------------------------------- Time 8.49 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTATTTV MEME-3 width = 8 sites = 3 llr = 31 E-value = 5.8e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTATTTV MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::a:::3 pos.-specific C :::::::3 probability G :::::::3 matrix T aaa:aaa: bits 2.1 ******* 1.9 ******* 1.7 ******* 1.5 ******* Relative 1.2 ******* Entropy 1.0 ******* (14.9 bits) 0.8 ******* 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTATTTA consensus C sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTATTTV MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr18:10482966-10482986 13 1.01e-05 CAGAAAGGCC TTTATTTA chr6:131520937-131520957 11 3.19e-05 CTGGCCATCA TTTATTTC TA chr10:11215067-11215087 1 3.19e-05 . TTTATTTG CAGCCAGCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTATTTV MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr18:10482966-10482986 1e-05 12_[+3] chr6:131520937-131520957 3.2e-05 10_[+3]_2 chr10:11215067-11215087 3.2e-05 [+3]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTATTTV MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTATTTV width=8 seqs=3 chr18:10482966-10482986 ( 13) TTTATTTA 1 chr6:131520937-131520957 ( 11) TTTATTTC 1 chr10:11215067-11215087 ( 1) TTTATTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTATTTV MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.73854 E= 5.8e+003 -823 -823 -823 208 -823 -823 -823 208 -823 -823 -823 208 204 -823 -823 -823 -823 -823 -823 208 -823 -823 -823 208 -823 -823 -823 208 46 34 37 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTATTTV MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 5.8e+003 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.333333 0.333333 0.333333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTATTTV MEME-3 regular expression -------------------------------------------------------------------------------- TTTATTT[ACG] -------------------------------------------------------------------------------- Time 10.61 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTTTTAA MEME-4 width = 8 sites = 2 llr = 23 E-value = 1.8e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTTTAA MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::::aa pos.-specific C :::::::: probability G :::::::: matrix T aaaaaa:: bits 2.1 ******** 1.9 ******** 1.7 ******** 1.5 ******** Relative 1.2 ******** Entropy 1.0 ******** (16.6 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTTTTAA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTAA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr4:154415142-154415162 4 1.01e-05 CCT TTTTTTAA TGAGTTGTG chr9:98269865-98269885 12 1.01e-05 CCGAGAATAA TTTTTTAA G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTAA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:154415142-154415162 1e-05 3_[+4]_9 chr9:98269865-98269885 1e-05 11_[+4]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTAA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTTTAA width=8 seqs=2 chr4:154415142-154415162 ( 4) TTTTTTAA 1 chr9:98269865-98269885 ( 12) TTTTTTAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTAA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.6653 E= 1.8e+003 -765 -765 -765 208 -765 -765 -765 208 -765 -765 -765 208 -765 -765 -765 208 -765 -765 -765 208 -765 -765 -765 208 204 -765 -765 -765 204 -765 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTAA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.8e+003 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTAA MEME-4 regular expression -------------------------------------------------------------------------------- TTTTTTAA -------------------------------------------------------------------------------- Time 11.36 secs. ******************************************************************************** ******************************************************************************** MOTIF TGKTGGGG MEME-5 width = 8 sites = 9 llr = 78 E-value = 1.5e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGKTGGGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::22: pos.-specific C :::::::: probability G 196:a88a matrix T 914a:::: bits 2.1 * 1.9 ** * 1.7 * ** * 1.5 ** ** * Relative 1.2 ** ***** Entropy 1.0 ******** (12.5 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGGTGGGG consensus T AA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGKTGGGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:186743590-186743610 11 1.64e-05 CCTGACCTCA TGGTGGGG AC chr19:5288113-5288133 13 1.64e-05 TAAGGGGTCA TGGTGGGG chr4:148721603-148721623 1 1.64e-05 . tggtgggg ctttaggttg chr6:32159978-32159998 4 6.23e-05 GAG TGGTGGAG TTTGGAGGG chr11:36768784-36768804 7 9.05e-05 GGCAAC TGTTGAGG TGCACC chr11:3880746-3880766 7 9.05e-05 TGCCAG TGTTGGAG GTATTG chr11:119623691-11962371 3 9.05e-05 AC TGTTGAGG GGGCTCTACC chr1:204332934-204332954 6 1.05e-04 AAGCC TTGTGGGG CCATCAT chr10:120969077-12096909 8 1.68e-04 TCCTCTG GGTTGGGG AATGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGKTGGGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:186743590-186743610 1.6e-05 10_[+5]_2 chr19:5288113-5288133 1.6e-05 12_[+5] chr4:148721603-148721623 1.6e-05 [+5]_12 chr6:32159978-32159998 6.2e-05 3_[+5]_9 chr11:36768784-36768804 9e-05 6_[+5]_6 chr11:3880746-3880766 9e-05 6_[+5]_6 chr11:119623691-11962371 9e-05 2_[+5]_10 chr1:204332934-204332954 0.00011 5_[+5]_7 chr10:120969077-12096909 0.00017 7_[+5]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGKTGGGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGKTGGGG width=8 seqs=9 chr3:186743590-186743610 ( 11) TGGTGGGG 1 chr19:5288113-5288133 ( 13) TGGTGGGG 1 chr4:148721603-148721623 ( 1) TGGTGGGG 1 chr6:32159978-32159998 ( 4) TGGTGGAG 1 chr11:36768784-36768804 ( 7) TGTTGAGG 1 chr11:3880746-3880766 ( 7) TGTTGGAG 1 chr11:119623691-11962371 ( 3) TGTTGAGG 1 chr1:204332934-204332954 ( 6) TTGTGGGG 1 chr10:120969077-12096909 ( 8) GGTTGGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGKTGGGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.34207 E= 1.5e+004 -982 -982 -121 191 -982 -982 178 -109 -982 -982 111 91 -982 -982 -982 208 -982 -982 195 -982 -12 -982 159 -982 -12 -982 159 -982 -982 -982 195 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGKTGGGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 1.5e+004 0.000000 0.000000 0.111111 0.888889 0.000000 0.000000 0.888889 0.111111 0.000000 0.000000 0.555556 0.444444 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.222222 0.000000 0.777778 0.000000 0.222222 0.000000 0.777778 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGKTGGGG MEME-5 regular expression -------------------------------------------------------------------------------- TG[GT]TG[GA][GA]G -------------------------------------------------------------------------------- Time 12.11 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:98269865-98269885 5.66e-04 11_[+4(1.01e-05)]_1 chr6:338989-339009 5.14e-01 20 chr1:209527849-209527869 7.42e-01 20 chr2:97426443-97426463 5.89e-01 20 chr1:155242508-155242528 8.02e-01 20 chr2:26828529-26828549 6.96e-01 20 chr14:22981225-22981245 9.43e-01 20 chr14:24631353-24631373 1.89e-01 20 chr10:11215067-11215087 1.27e-04 [+3(3.19e-05)]_12 chr15:65809359-65809379 6.84e-01 20 chr3:69134849-69134869 7.09e-01 20 chr16:10972320-10972340 3.33e-01 20 chr14:22990026-22990046 7.44e-01 20 chr10:23001939-23001959 9.98e-01 20 chr1:93298505-93298525 9.87e-01 20 chr21:26790600-26790620 8.32e-01 20 chr2:200324349-200324369 9.32e-01 20 chr6:90057777-90057797 2.31e-02 2_[+2(3.37e-05)]_10 chr6:330825-330845 1.23e-01 20 chr12:12872094-12872114 6.96e-01 20 chr4:38780403-38780423 5.09e-01 20 chr10:63662046-63662066 3.67e-01 20 chr19:44029853-44029873 6.77e-01 20 chr16:87985962-87985982 6.16e-01 20 chr10:97049736-97049756 3.96e-01 20 chr9:89563515-89563535 9.83e-01 20 chr1:25288499-25288519 9.43e-01 20 chr8:72755640-72755660 8.64e-01 20 chr3:119274937-119274957 3.21e-01 20 chr20:49127858-49127878 3.94e-01 20 chr9:1005250-1005270 9.02e-02 20 chr1:154841166-154841186 3.80e-02 20 chr5:142730489-142730509 6.87e-01 20 chr10:81005650-81005670 8.47e-01 20 chr18:60981670-60981690 1.26e-01 20 chr2:46843497-46843517 9.56e-01 20 chr1:38396346-38396366 3.33e-01 20 chr19:44283831-44283851 8.68e-01 20 chr1:234739765-234739785 4.64e-01 20 chr11:121327898-12132791 1.80e-01 20 chr17:76710622-76710642 1.00e+00 20 chr1:234741830-234741850 9.60e-01 20 chr2:198170907-198170927 9.97e-01 20 chr1:203595783-203595803 1.90e-01 20 chr7:155091288-155091308 5.97e-01 20 chr21:34777694-34777714 7.25e-01 20 chr2:57948136-57948156 9.91e-01 20 chr1:156738862-156738882 9.81e-01 20 chr1:207994987-207995007 8.33e-01 20 chr5:139031342-139031362 8.82e-01 20 chr4:83294550-83294570 4.73e-01 20 chr6:32159978-32159998 9.77e-03 3_[+5(6.23e-05)]_9 chr19:42758400-42758420 9.86e-01 20 chr6:41673275-41673295 4.24e-01 20 chr2:64868708-64868728 9.41e-01 20 chr2:11894691-11894711 2.01e-02 20 chr4:40211963-40211983 2.16e-01 20 chr3:9835203-9835223 2.64e-01 20 chr7:91874586-91874606 4.53e-02 12_[+2(3.37e-05)] chr4:40204354-40204374 1.57e-01 20 chr2:158289156-158289176 9.39e-01 20 chr19:56168237-56168257 9.50e-01 20 chr14:89884377-89884397 3.76e-01 20 chr1:160677221-160677241 8.12e-01 20 chr3:194305102-194305122 8.17e-01 20 chr12:92530170-92530190 3.39e-01 20 chr16:2480527-2480547 6.75e-01 20 chr1:203275610-203275630 1.28e-01 20 chr7:128809936-128809956 4.55e-01 20 chr14:22977923-22977943 8.87e-01 20 chr4:154415142-154415162 2.27e-04 3_[+4(1.01e-05)]_9 chr2:231786731-231786751 5.46e-01 20 chr1:160599773-160599793 1.25e-01 20 chr12:8761723-8761743 3.47e-01 20 chr5:95154254-95154274 8.72e-01 20 chr1:32647311-32647331 2.72e-01 20 chr3:52720363-52720383 4.76e-02 20 chr3:47006990-47007010 7.15e-01 20 chr5:156536969-156536989 8.06e-02 20 chr4:148721603-148721623 6.49e-03 [+5(1.64e-05)]_12 chr14:100532017-10053203 5.92e-01 20 chr11:4115437-4115457 9.93e-01 20 chr21:45206575-45206595 8.91e-01 20 chr13:30168632-30168652 4.50e-02 20 chr18:56201889-56201909 6.83e-01 20 chr17:76764585-76764605 9.72e-01 20 chr11:62493317-62493337 9.08e-01 20 chr3:61222532-61222552 2.10e-01 20 chr7:104655266-104655286 2.26e-01 20 chr12:12873126-12873146 9.01e-02 20 chr9:3527056-3527076 5.58e-02 9_[+1(5.86e-05)]_3 chr17:78170052-78170072 5.43e-01 20 chr10:11279273-11279293 4.79e-01 20 chr2:88924033-88924053 7.72e-01 20 chr7:150434508-150434528 1.48e-02 2_[+1(2.91e-05)]_10 chr12:102872541-10287256 3.97e-01 20 chr22:27006778-27006798 8.32e-01 20 chr1:37941658-37941678 3.91e-01 20 chr11:62648217-62648237 7.41e-01 20 chr6:70576770-70576790 6.49e-01 20 chr19:49149784-49149804 4.68e-01 20 chr12:11916647-11916667 7.26e-01 20 chr11:119623691-11962371 5.97e-02 2_[+5(9.05e-05)]_10 chr1:154580082-154580102 8.17e-01 20 chr1:36625581-36625601 9.13e-01 20 chr12:8179808-8179828 1.29e-01 20 chr4:185391760-185391780 3.15e-01 20 chr5:156263048-156263068 5.33e-01 20 chr18:56205090-56205110 8.96e-01 20 chr14:22951335-22951355 3.37e-02 20 chr9:132785946-132785966 6.51e-01 20 chr16:4556604-4556624 7.54e-02 20 chr9:117374739-117374759 9.43e-02 20 chr12:13515384-13515404 3.96e-01 20 chr12:12867623-12867643 3.35e-01 20 chr12:54675151-54675171 1.00e+00 20 chr1:221899363-221899383 8.50e-01 20 chr6:44040875-44040895 1.33e-01 20 chr8:28241849-28241869 5.21e-01 20 chr19:5288113-5288133 1.37e-02 12_[+5(1.64e-05)] chr14:53616868-53616888 2.02e-01 20 chr3:111842451-111842471 9.05e-01 20 chr1:19803733-19803753 3.33e-01 20 chr1:212629394-212629414 3.34e-01 20 chr8:48426520-48426540 4.69e-01 20 chr21:45663352-45663372 2.34e-03 11_[+1(1.44e-05)]_1 chr7:1397273-1397293 8.95e-01 20 chr11:35165583-35165603 4.18e-01 20 chr1:116921892-116921912 4.15e-01 20 chr6:24719730-24719750 5.54e-01 20 chr17:48241333-48241353 4.23e-02 20 chr12:121476945-12147696 6.73e-02 20 chr9:132766633-132766653 4.86e-01 20 chr19:16189450-16189470 2.85e-01 20 chr7:8010415-8010435 9.37e-01 20 chr3:16555747-16555767 3.41e-01 20 chr18:9137907-9137927 1.76e-01 20 chr2:214014983-214015003 8.38e-01 20 chr6:130342370-130342390 2.51e-02 20 chr11:120100769-12010078 3.33e-01 20 chr12:31472895-31472915 8.55e-02 4_[+2(3.37e-05)]_8 chr19:10342382-10342402 7.72e-01 20 chr6:33043174-33043194 8.97e-01 20 chr3:112214795-112214815 6.09e-01 20 chr16:4364401-4364421 6.33e-01 20 chr21:26793885-26793905 5.04e-01 20 chr12:48136168-48136188 5.36e-01 20 chr19:58899154-58899174 9.72e-01 20 chr5:150459572-150459592 2.78e-01 20 chr5:107978188-107978208 9.50e-01 20 chr2:65150423-65150443 8.01e-01 20 chr1:150337746-150337766 3.85e-01 20 chr10:11222120-11222140 6.67e-03 4_[+1(1.44e-05)]_8 chr10:94000428-94000448 9.69e-01 20 chr3:49057641-49057661 8.26e-01 20 chr7:12250513-12250533 1.03e-01 20 chr6:13432248-13432268 6.61e-01 20 chr15:80269820-80269840 7.94e-02 20 chr22:29602664-29602684 6.90e-01 20 chr1:25361362-25361382 2.03e-01 20 chr2:55845294-55845314 9.99e-01 20 chr21:45206775-45206795 7.92e-01 20 chr10:106098381-10609840 7.88e-01 20 chr1:117101989-117102009 5.26e-01 20 chr6:299227-299247 2.02e-01 20 chr8:72754348-72754368 9.98e-01 20 chr9:136287009-136287029 2.14e-01 20 chr6:32408523-32408543 4.73e-01 20 chr10:97625123-97625143 9.17e-01 20 chr1:153930491-153930511 3.83e-01 20 chr3:5027754-5027774 1.34e-02 [+1(7.47e-05)]_12 chr19:14628180-14628200 1.98e-01 20 chr7:134853234-134853254 8.52e-01 20 chr6:131520937-131520957 3.46e-02 10_[+3(3.19e-05)]_2 chr2:238877281-238877301 2.35e-01 20 chr15:75162145-75162165 9.18e-01 20 chr2:238602480-238602500 8.28e-01 20 chr8:52438804-52438824 9.84e-01 20 chr12:11912732-11912752 7.47e-01 20 chr2:113642680-113642700 6.30e-01 20 chr4:152021259-152021279 3.84e-01 20 chr12:121108665-12110868 3.55e-03 20 chr1:200836373-200836393 2.55e-01 20 chr4:40195456-40195476 4.50e-02 20 chr18:10482966-10482986 6.56e-04 12_[+3(1.01e-05)] chr9:126403446-126403466 9.19e-01 20 chr6:43276583-43276603 9.83e-01 20 chr12:12870220-12870240 8.35e-01 20 chr17:25905844-25905864 3.90e-01 20 chr2:62427714-62427734 9.19e-01 20 chr5:142587345-142587365 9.78e-01 20 chr1:212851716-212851736 6.46e-01 20 chr12:68617139-68617159 9.83e-01 20 chr11:102300794-10230081 5.34e-02 20 chr2:54806438-54806458 7.97e-01 20 chr16:71842237-71842257 6.81e-03 20 chr2:68596002-68596022 3.27e-01 20 chr3:111848335-111848355 9.28e-01 20 chr3:101571981-101572001 9.44e-01 20 chr14:75987890-75987910 5.08e-01 20 chr4:183839102-183839122 9.52e-03 9_[+2(6.67e-05)]_3 chr9:5608766-5608786 4.44e-01 20 chr11:192183-192203 4.08e-01 20 chr16:31129556-31129576 2.01e-01 20 chr6:32822444-32822464 9.99e-01 20 chr2:188313011-188313031 8.47e-01 20 chr2:68592602-68592622 8.83e-01 20 chr15:69084174-69084194 8.80e-01 20 chr11:3880746-3880766 1.01e-01 6_[+5(9.05e-05)]_6 chr1:204332934-204332954 1.05e-01 20 chr5:150457727-150457747 6.85e-01 20 chr16:8892189-8892209 2.13e-02 11_[+1(2.91e-05)]_1 chr1:93428126-93428146 9.92e-01 20 chr17:73341655-73341675 9.34e-01 20 chr7:7609049-7609069 9.33e-01 20 chr8:101456485-101456505 8.98e-01 20 chr2:64752172-64752192 8.30e-01 20 chr6:151645533-151645553 4.56e-01 20 chr14:60717301-60717321 1.87e-02 2_[+1(1.44e-05)]_10 chr11:130304654-13030467 4.11e-01 20 chr3:186743590-186743610 9.11e-03 10_[+5(1.64e-05)]_2 chr7:137670140-137670160 5.26e-01 20 chr6:402151-402171 2.60e-01 20 chr9:99176130-99176150 1.68e-01 20 chr9:112839274-112839294 3.38e-01 20 chr17:57917255-57917275 9.96e-01 20 chr2:30934635-30934655 1.22e-01 20 chr11:3859151-3859171 9.32e-01 20 chr12:12735327-12735347 2.39e-02 6_[+2(3.37e-05)]_6 chr6:34954715-34954735 8.67e-01 20 chr20:37439030-37439050 1.36e-01 20 chr1:32014752-32014772 5.21e-01 20 chr5:148930388-148930408 3.63e-01 20 chr12:54671933-54671953 6.04e-01 20 chr3:122398245-122398265 9.94e-01 20 chr2:69952021-69952041 3.31e-01 20 chr16:89253488-89253508 9.42e-01 20 chr11:36768784-36768804 5.18e-02 6_[+5(9.05e-05)]_6 chr21:26935975-26935995 5.75e-01 20 chr17:73389689-73389709 3.79e-01 20 chr8:11357102-11357122 8.74e-01 20 chr2:160570511-160570531 2.39e-02 20 chr2:242254254-242254274 1.83e-02 5_[+1(5.86e-05)]_7 chr18:20938632-20938652 9.52e-01 20 chr10:120969077-12096909 7.15e-02 20 chr9:19926199-19926219 4.10e-01 20 chr6:24666665-24666685 6.56e-01 20 chr3:121793572-121793592 9.67e-01 20 chr3:49131917-49131937 1.84e-01 20 chr2:31359666-31359686 9.50e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n09.farnam.hpc.yale.internal ********************************************************************************