******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/UBTF.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr22:41698302-41698322 1.0000 20 chr3:179041524-179041544 1.0000 20 chr19:4065671-4065691 1.0000 20 chr5:137688647-137688667 1.0000 20 chr18:60383399-60383419 1.0000 20 chr17:47439157-47439177 1.0000 20 chr2:38603681-38603701 1.0000 20 chr3:168867366-168867386 1.0000 20 chr1:224621979-224621999 1.0000 20 chr1:229693895-229693915 1.0000 20 chr2:128459799-128459819 1.0000 20 chr18:60192019-60192039 1.0000 20 chr19:16738469-16738489 1.0000 20 chr5:158526216-158526236 1.0000 20 chr7:129251838-129251858 1.0000 20 chr17:29335457-29335477 1.0000 20 chr6:168228567-168228587 1.0000 20 chr5:176561185-176561205 1.0000 20 chr3:182698073-182698093 1.0000 20 chr6:90062126-90062146 1.0000 20 chr19:12996506-12996526 1.0000 20 chr5:141488682-141488702 1.0000 20 chr6:119216286-119216306 1.0000 20 chr20:2505236-2505256 1.0000 20 chr1:225997823-225997843 1.0000 20 chr2:48132443-48132463 1.0000 20 chr10:181843-181863 1.0000 20 chr12:42631449-42631469 1.0000 20 chr12:125051866-12505188 1.0000 20 chr22:38901671-38901691 1.0000 20 chr10:103454077-10345409 1.0000 20 chr18:24127894-24127914 1.0000 20 chr7:148396211-148396231 1.0000 20 chr14:31676694-31676714 1.0000 20 chr11:32914911-32914931 1.0000 20 chr8:87526985-87527005 1.0000 20 chr2:225449608-225449628 1.0000 20 chr17:66755703-66755723 1.0000 20 chr6:157100656-157100676 1.0000 20 chr9:36487578-36487598 1.0000 20 chr6:106534309-106534329 1.0000 20 chr12:122017273-12201729 1.0000 20 chr17:76120831-76120851 1.0000 20 chr10:22614740-22614760 1.0000 20 chr21:37802356-37802376 1.0000 20 chr8:126442885-126442905 1.0000 20 chr5:138730012-138730032 1.0000 20 chr7:135194587-135194607 1.0000 20 chr11:109964418-10996443 1.0000 20 chr19:48894027-48894047 1.0000 20 chr16:58034419-58034439 1.0000 20 chr17:46620880-46620900 1.0000 20 chr1:154193749-154193769 1.0000 20 chr1:53387350-53387370 1.0000 20 chr2:85199200-85199220 1.0000 20 chr10:115861008-11586102 1.0000 20 chr15:56535647-56535667 1.0000 20 chr5:77944984-77945004 1.0000 20 chr9:35071915-35071935 1.0000 20 chr13:21347755-21347775 1.0000 20 chr7:559833-559853 1.0000 20 chr12:104609578-10460959 1.0000 20 chr3:25705971-25705991 1.0000 20 chr15:72767468-72767488 1.0000 20 chr4:114682755-114682775 1.0000 20 chr15:85176860-85176880 1.0000 20 chr2:166810052-166810072 1.0000 20 chr2:191208883-191208903 1.0000 20 chr1:46767886-46767906 1.0000 20 chr3:47204875-47204895 1.0000 20 chr15:41166016-41166036 1.0000 20 chr16:90015129-90015149 1.0000 20 chr6:161412521-161412541 1.0000 20 chr8:38239464-38239484 1.0000 20 chr16:69345698-69345718 1.0000 20 chr11:63753397-63753417 1.0000 20 chr8:59571799-59571819 1.0000 20 chr4:122617931-122617951 1.0000 20 chr20:62680613-62680633 1.0000 20 chr5:130500335-130500355 1.0000 20 chr6:42531968-42531988 1.0000 20 chr12:6876057-6876077 1.0000 20 chr10:88281219-88281239 1.0000 20 chr11:11863732-11863752 1.0000 20 chr6:170124986-170125006 1.0000 20 chr2:85197816-85197836 1.0000 20 chr12:116714963-11671498 1.0000 20 chr1:59282051-59282071 1.0000 20 chr2:230785068-230785088 1.0000 20 chr11:66880888-66880908 1.0000 20 chr2:206950548-206950568 1.0000 20 chr15:93257941-93257961 1.0000 20 chr7:120497771-120497791 1.0000 20 chr6:116692434-116692454 1.0000 20 chr14:60632090-60632110 1.0000 20 chr9:140083674-140083694 1.0000 20 chr10:116581878-11658189 1.0000 20 chr7:77044912-77044932 1.0000 20 chr5:125759191-125759211 1.0000 20 chr11:128564240-12856426 1.0000 20 chr2:160568495-160568515 1.0000 20 chr2:133015230-133015250 1.0000 20 chr17:79319610-79319630 1.0000 20 chr8:141644465-141644485 1.0000 20 chr8:62626765-62626785 1.0000 20 chr18:29598628-29598648 1.0000 20 chr19:33864881-33864901 1.0000 20 chr12:32832626-32832646 1.0000 20 chrX:54070562-54070582 1.0000 20 chr18:9335220-9335240 1.0000 20 chr2:182757009-182757029 1.0000 20 chr20:1875235-1875255 1.0000 20 chr18:56338796-56338816 1.0000 20 chr18:52989819-52989839 1.0000 20 chr5:36877547-36877567 1.0000 20 chr20:45317776-45317796 1.0000 20 chr5:151150150-151150170 1.0000 20 chr14:53162249-53162269 1.0000 20 chr17:61851813-61851833 1.0000 20 chr1:52608332-52608352 1.0000 20 chr19:12751043-12751063 1.0000 20 chr6:170123720-170123740 1.0000 20 chr15:64125714-64125734 1.0000 20 chr6:56708184-56708204 1.0000 20 chr12:56321589-56321609 1.0000 20 chr16:89895023-89895043 1.0000 20 chr15:54270626-54270646 1.0000 20 chr7:6414549-6414569 1.0000 20 chr14:77843276-77843296 1.0000 20 chr11:9483025-9483045 1.0000 20 chr7:77045861-77045881 1.0000 20 chr6:43738892-43738912 1.0000 20 chr12:133338842-13333886 1.0000 20 chr9:71320217-71320237 1.0000 20 chr2:174830431-174830451 1.0000 20 chr3:127174639-127174659 1.0000 20 chr8:29208625-29208645 1.0000 20 chr3:141206681-141206701 1.0000 20 chr15:91073758-91073778 1.0000 20 chr1:1840303-1840323 1.0000 20 chr6:127588431-127588451 1.0000 20 chr15:91073307-91073327 1.0000 20 chr10:79597461-79597481 1.0000 20 chr6:160148877-160148897 1.0000 20 chr9:98271300-98271320 1.0000 20 chr8:65494329-65494349 1.0000 20 chr7:89841148-89841168 1.0000 20 chr6:119558610-119558630 1.0000 20 chr19:52034956-52034976 1.0000 20 chr6:33756514-33756534 1.0000 20 chr1:52607737-52607757 1.0000 20 chr1:11724266-11724286 1.0000 20 chr12:88429550-88429570 1.0000 20 chr12:54719148-54719168 1.0000 20 chr1:23670342-23670362 1.0000 20 chr11:15671674-15671694 1.0000 20 chr16:14379208-14379228 1.0000 20 chr16:30787058-30787078 1.0000 20 chr11:63606826-63606846 1.0000 20 chr16:48278609-48278629 1.0000 20 chr2:120770470-120770490 1.0000 20 chr6:4021930-4021950 1.0000 20 chr15:65321686-65321706 1.0000 20 chr2:26569150-26569170 1.0000 20 chr11:77123011-77123031 1.0000 20 chr17:1465263-1465283 1.0000 20 chr10:13389384-13389404 1.0000 20 chr17:4643073-4643093 1.0000 20 chr7:128171599-128171619 1.0000 20 chr1:204463808-204463828 1.0000 20 chr1:6305246-6305266 1.0000 20 chr8:74207201-74207221 1.0000 20 chr11:44117307-44117327 1.0000 20 chr15:72766893-72766913 1.0000 20 chr9:130545546-130545566 1.0000 20 chr21:38739416-38739436 1.0000 20 chr15:91445731-91445751 1.0000 20 chr4:87515538-87515558 1.0000 20 chr10:6131212-6131232 1.0000 20 chr8:131371289-131371309 1.0000 20 chr16:75589883-75589903 1.0000 20 chr4:1341452-1341472 1.0000 20 chr4:699827-699847 1.0000 20 chr11:65292769-65292789 1.0000 20 chr10:104404719-10440473 1.0000 20 chr2:160472368-160472388 1.0000 20 chr17:11924434-11924454 1.0000 20 chr6:44233145-44233165 1.0000 20 chr9:96214636-96214656 1.0000 20 chr14:64320173-64320193 1.0000 20 chr8:28260150-28260170 1.0000 20 chr5:67584301-67584321 1.0000 20 chr12:56651956-56651976 1.0000 20 chr12:53846284-53846304 1.0000 20 chr5:36876058-36876078 1.0000 20 chr9:136214508-136214528 1.0000 20 chr6:28249368-28249388 1.0000 20 chr8:59572278-59572298 1.0000 20 chr21:33032617-33032637 1.0000 20 chr3:182511789-182511809 1.0000 20 chr22:35653697-35653717 1.0000 20 chr16:14580928-14580948 1.0000 20 chr7:1017686-1017706 1.0000 20 chr12:27933369-27933389 1.0000 20 chr11:64611996-64612016 1.0000 20 chr7:129074434-129074454 1.0000 20 chr10:94051130-94051150 1.0000 20 chr22:18506545-18506565 1.0000 20 chr8:99837657-99837677 1.0000 20 chr21:47879028-47879048 1.0000 20 chr1:154971706-154971726 1.0000 20 chr4:71704794-71704814 1.0000 20 chr11:64884905-64884925 1.0000 20 chr9:133710477-133710497 1.0000 20 chr15:65116297-65116317 1.0000 20 chr20:26189305-26189325 1.0000 20 chr9:123691384-123691404 1.0000 20 chr19:18942964-18942984 1.0000 20 chr9:139736956-139736976 1.0000 20 chr11:47788629-47788649 1.0000 20 chr6:151711286-151711306 1.0000 20 chr15:91446275-91446295 1.0000 20 chr19:14142665-14142685 1.0000 20 chr1:36234965-36234985 1.0000 20 chr19:38146088-38146108 1.0000 20 chr22:50981078-50981098 1.0000 20 chr11:64684665-64684685 1.0000 20 chr3:150321333-150321353 1.0000 20 chr10:88471853-88471873 1.0000 20 chr17:34091229-34091249 1.0000 20 chr1:46216520-46216540 1.0000 20 chr6:107435604-107435624 1.0000 20 chr13:53227018-53227038 1.0000 20 chr3:126194401-126194421 1.0000 20 chr1:145029712-145029732 1.0000 20 chr16:56390417-56390437 1.0000 20 chr6:87861743-87861763 1.0000 20 chr19:49178769-49178789 1.0000 20 chr2:54342646-54342666 1.0000 20 chr20:57225405-57225425 1.0000 20 chr17:75453490-75453510 1.0000 20 chr10:18948499-18948519 1.0000 20 chr6:56407583-56407603 1.0000 20 chr2:190539301-190539321 1.0000 20 chr16:89050356-89050376 1.0000 20 chr20:25371720-25371740 1.0000 20 chr18:2655996-2656016 1.0000 20 chr12:53273469-53273489 1.0000 20 chr12:8185350-8185370 1.0000 20 chr4:147097001-147097021 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_UBTF/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/UBTF.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.117 C 0.373 G 0.372 T 0.138 Background letter frequencies (from file dataset with add-one prior applied): A 0.117 C 0.373 G 0.372 T 0.138 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GGAGSWGC MEME-1 width = 8 sites = 27 llr = 185 E-value = 3.9e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGAGSWGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1:a:16:3 pos.-specific C 23::4::7 probability G 76:a5:a: matrix T :1::14:: bits 3.1 * 2.8 * 2.5 * 2.2 * * Relative 1.9 * * Entropy 1.5 ** ** (9.9 bits) 1.2 ** ** 0.9 ** *** 0.6 ** *** 0.3 **** *** 0.0 -------- Multilevel GGAGGAGC consensus C CT A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGSWGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:52034956-52034976 5 5.92e-05 CTGG GGAGGAGC GCGTGATC chr3:141206681-141206701 1 5.92e-05 . GGAGGAGC TCGGCGGGAC chr20:45317776-45317796 10 5.92e-05 GGCGACAGC GGAGGAGC GCC chr6:127588431-127588451 13 1.16e-04 TGCGAGGGGC GGAGCAGC chr1:23670342-23670362 6 2.35e-04 GGCGG GGAGAAGC GGCAGGG chr16:89895023-89895043 10 2.35e-04 GTCCCTGGA GGAGGTGC TGA chr6:43738892-43738912 13 2.60e-04 GCCGAGGCGC CGAGGAGA chr11:11863732-11863752 12 2.60e-04 TGGTGCCCGG CGAGGAGA A chr7:129074434-129074454 5 3.74e-04 AGTC AGAGGTGA GGAGCCCG chr22:35653697-35653717 11 3.74e-04 GCCGGGGACT GGAGTAGC GG chr1:6305246-6305266 7 3.74e-04 CGGCGC GGAGATGA GGTCGG chr1:52607737-52607757 12 3.74e-04 GGCGCCGGCG GCAGGAGC G chr1:52608332-52608352 6 3.74e-04 GGCCG GCAGGAGC ACGGCCG chr21:37802356-37802376 9 3.74e-04 AGCTTCGC AGAGCAGC CTGG chr17:76120831-76120851 1 3.74e-04 . AGAGCAGC GCCAGGCCCA chr13:53227018-53227038 1 4.06e-04 . gtagcagc tccggcggca chr9:130545546-130545566 2 4.06e-04 T GTAGGTGA CAACTCCACC chr8:65494329-65494349 3 4.74e-04 CG GCAGCAGC TGCTGCCCTG chr10:88281219-88281239 6 4.74e-04 GGCCG GCAGGTGA GAGCCGA chr16:90015129-90015149 5 4.74e-04 GGCG GCAGCAGC GAGCgcgg chr11:66880888-66880908 12 4.82e-04 AAGCACAGGT GTAGCTGA G chr17:66755703-66755723 7 5.40e-04 GGTAGG GCAGCTGA CATCCT chr19:12996506-12996526 4 5.40e-04 ACC CGAGGAGC CGGCGCCGG chr2:166810052-166810072 8 6.49e-04 CGCAACC CGAGCAGC CGGGG chr11:109964418-10996443 5 6.49e-04 CGGG CGAGGTGA GGCCGGGC chr9:136214508-136214528 6 7.54e-04 GCGCT GGAGTTGC CTGGCCC chr6:170124986-170125006 1 8.96e-04 . GCAGCTGC ACCCGGGGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGSWGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:52034956-52034976 5.9e-05 4_[+1]_8 chr3:141206681-141206701 5.9e-05 [+1]_12 chr20:45317776-45317796 5.9e-05 9_[+1]_3 chr6:127588431-127588451 0.00012 12_[+1] chr1:23670342-23670362 0.00023 5_[+1]_7 chr16:89895023-89895043 0.00023 9_[+1]_3 chr6:43738892-43738912 0.00026 12_[+1] chr11:11863732-11863752 0.00026 11_[+1]_1 chr7:129074434-129074454 0.00037 4_[+1]_8 chr22:35653697-35653717 0.00037 10_[+1]_2 chr1:6305246-6305266 0.00037 6_[+1]_6 chr1:52607737-52607757 0.00037 11_[+1]_1 chr1:52608332-52608352 0.00037 5_[+1]_7 chr21:37802356-37802376 0.00037 8_[+1]_4 chr17:76120831-76120851 0.00037 [+1]_12 chr13:53227018-53227038 0.00041 [+1]_12 chr9:130545546-130545566 0.00041 1_[+1]_11 chr8:65494329-65494349 0.00047 2_[+1]_10 chr10:88281219-88281239 0.00047 5_[+1]_7 chr16:90015129-90015149 0.00047 4_[+1]_8 chr11:66880888-66880908 0.00048 11_[+1]_1 chr17:66755703-66755723 0.00054 6_[+1]_6 chr19:12996506-12996526 0.00054 3_[+1]_9 chr2:166810052-166810072 0.00065 7_[+1]_5 chr11:109964418-10996443 0.00065 4_[+1]_8 chr9:136214508-136214528 0.00075 5_[+1]_7 chr6:170124986-170125006 0.0009 [+1]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGSWGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGAGSWGC width=8 seqs=27 chr19:52034956-52034976 ( 5) GGAGGAGC 1 chr3:141206681-141206701 ( 1) GGAGGAGC 1 chr20:45317776-45317796 ( 10) GGAGGAGC 1 chr6:127588431-127588451 ( 13) GGAGCAGC 1 chr1:23670342-23670362 ( 6) GGAGAAGC 1 chr16:89895023-89895043 ( 10) GGAGGTGC 1 chr6:43738892-43738912 ( 13) CGAGGAGA 1 chr11:11863732-11863752 ( 12) CGAGGAGA 1 chr7:129074434-129074454 ( 5) AGAGGTGA 1 chr22:35653697-35653717 ( 11) GGAGTAGC 1 chr1:6305246-6305266 ( 7) GGAGATGA 1 chr1:52607737-52607757 ( 12) GCAGGAGC 1 chr1:52608332-52608352 ( 6) GCAGGAGC 1 chr21:37802356-37802376 ( 9) AGAGCAGC 1 chr17:76120831-76120851 ( 1) AGAGCAGC 1 chr13:53227018-53227038 ( 1) GTAGCAGC 1 chr9:130545546-130545566 ( 2) GTAGGTGA 1 chr8:65494329-65494349 ( 3) GCAGCAGC 1 chr10:88281219-88281239 ( 6) GCAGGTGA 1 chr16:90015129-90015149 ( 5) GCAGCAGC 1 chr11:66880888-66880908 ( 12) GTAGCTGA 1 chr17:66755703-66755723 ( 7) GCAGCTGA 1 chr19:12996506-12996526 ( 4) CGAGGAGC 1 chr2:166810052-166810072 ( 8) CGAGCAGC 1 chr11:109964418-10996443 ( 5) CGAGGTGA 1 chr9:136214508-136214528 ( 6) GGAGTTGC 1 chr6:170124986-170125006 ( 1) GCAGCTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGSWGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.47226 E= 3.9e+001 -7 -101 92 -1140 -1140 -52 76 -31 310 -1140 -1140 -1140 -1140 -1140 143 -1140 -66 -1 37 -89 243 -1140 -1140 143 -1140 -1140 143 -1140 151 84 -1140 -1140 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGSWGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 3.9e+001 0.111111 0.185185 0.703704 0.000000 0.000000 0.259259 0.629630 0.111111 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.074074 0.370370 0.481481 0.074074 0.629630 0.000000 0.000000 0.370370 0.000000 0.000000 1.000000 0.000000 0.333333 0.666667 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGSWGC MEME-1 regular expression -------------------------------------------------------------------------------- G[GC]AG[GC][AT]G[CA] -------------------------------------------------------------------------------- Time 2.14 secs. ******************************************************************************** ******************************************************************************** MOTIF AAKCTACT MEME-2 width = 8 sites = 2 llr = 26 E-value = 9.4e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAKCTACT MEME-2 Description -------------------------------------------------------------------------------- Simplified A aa:::a:: pos.-specific C :::a::a: probability G ::5::::: matrix T ::5:a::a bits 3.1 ** * 2.8 ** ** * 2.5 ** ** * 2.2 ** ** * Relative 1.9 ** ** * Entropy 1.5 ** ***** (19.0 bits) 1.2 ******** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel AAGCTACT consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAKCTACT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr5:36877547-36877567 9 5.86e-07 GCCAGCGG AATCTACT TGAG chr19:48894027-48894047 8 2.16e-06 GCCCCCG AAGCTACT CCAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAKCTACT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:36877547-36877567 5.9e-07 8_[+2]_4 chr19:48894027-48894047 2.2e-06 7_[+2]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAKCTACT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAKCTACT width=8 seqs=2 chr5:36877547-36877567 ( 9) AATCTACT 1 chr19:48894027-48894047 ( 8) AAGCTACT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAKCTACT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.6653 E= 9.4e+002 309 -765 -765 -765 309 -765 -765 -765 -765 -765 42 186 -765 142 -765 -765 -765 -765 -765 285 309 -765 -765 -765 -765 142 -765 -765 -765 -765 -765 285 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAKCTACT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 9.4e+002 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAKCTACT MEME-2 regular expression -------------------------------------------------------------------------------- AA[GT]CTACT -------------------------------------------------------------------------------- Time 3.90 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGRAAAG MEME-3 width = 8 sites = 2 llr = 25 E-value = 2.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGRAAAG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :a:5aaa: pos.-specific C a::::::: probability G ::a5:::a matrix T :::::::: bits 3.1 * *** 2.8 * *** 2.5 * *** 2.2 * *** Relative 1.9 * *** Entropy 1.5 *** **** (17.9 bits) 1.2 ******** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel CAGAAAAG consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGRAAAG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr15:54270626-54270646 11 1.13e-06 GTGCTGCATT CAGAAAAG AC chr11:32914911-32914931 3 4.73e-06 AC CAGGAAAG GCCGGGGATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGRAAAG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:54270626-54270646 1.1e-06 10_[+3]_2 chr11:32914911-32914931 4.7e-06 2_[+3]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGRAAAG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGRAAAG width=8 seqs=2 chr15:54270626-54270646 ( 11) CAGAAAAG 1 chr11:32914911-32914931 ( 3) CAGGAAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGRAAAG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.81663 E= 2.2e+003 -765 142 -765 -765 309 -765 -765 -765 -765 -765 142 -765 209 -765 42 -765 309 -765 -765 -765 309 -765 -765 -765 309 -765 -765 -765 -765 -765 142 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGRAAAG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.2e+003 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.000000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGRAAAG MEME-3 regular expression -------------------------------------------------------------------------------- CAG[AG]AAAG -------------------------------------------------------------------------------- Time 4.65 secs. ******************************************************************************** ******************************************************************************** MOTIF TGMTTTTC MEME-4 width = 8 sites = 4 llr = 44 E-value = 2.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGMTTTTC MEME-4 Description -------------------------------------------------------------------------------- Simplified A 335::::3 pos.-specific C ::5::::8 probability G :8:3:::: matrix T 8::8aaa: bits 3.1 2.8 *** 2.5 *** 2.2 * *** Relative 1.9 * *** Entropy 1.5 * **** (15.7 bits) 1.2 * ***** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel TGATTTTC consensus AACG A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGMTTTTC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr8:38239464-38239484 3 2.59e-06 CT AGATTTTC CCCGCGCCGG chr6:119558610-119558630 13 2.85e-06 GCGTCCGTGG TACTTTTA chr19:49178769-49178789 7 7.07e-06 GGCTGG TGCTTTTC TGCGGC chr6:157100656-157100676 8 1.46e-05 GCGAGCC TGAGTTTC TTTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGMTTTTC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:38239464-38239484 2.6e-06 2_[+4]_10 chr6:119558610-119558630 2.8e-06 12_[+4] chr19:49178769-49178789 7.1e-06 6_[+4]_6 chr6:157100656-157100676 1.5e-05 7_[+4]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGMTTTTC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGMTTTTC width=8 seqs=4 chr8:38239464-38239484 ( 3) AGATTTTC 1 chr6:119558610-119558630 ( 13) TACTTTTA 1 chr19:49178769-49178789 ( 7) TGCTTTTC 1 chr6:157100656-157100676 ( 8) TGAGTTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGMTTTTC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.66445 E= 2.9e+003 109 -865 -865 244 109 -865 101 -865 209 42 -865 -865 -865 -865 -57 244 -865 -865 -865 286 -865 -865 -865 286 -865 -865 -865 286 109 101 -865 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGMTTTTC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 2.9e+003 0.250000 0.000000 0.000000 0.750000 0.250000 0.000000 0.750000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.250000 0.750000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGMTTTTC MEME-4 regular expression -------------------------------------------------------------------------------- [TA][GA][AC][TG]TTT[CA] -------------------------------------------------------------------------------- Time 6.18 secs. ******************************************************************************** ******************************************************************************** MOTIF YWCAGTAG MEME-5 width = 8 sites = 4 llr = 42 E-value = 5.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif YWCAGTAG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :53a::a: pos.-specific C 5:8:3::: probability G ::::8::a matrix T 55:::a:: bits 3.1 * * 2.8 * ** 2.5 * ** 2.2 * ** Relative 1.9 * * ** Entropy 1.5 * * *** (15.2 bits) 1.2 ** * *** 0.9 **** *** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel CACAGTAG consensus TTA C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YWCAGTAG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:120497771-120497791 13 2.65e-06 GAGCCAGCCC TTAAGTAG chr22:50981078-50981098 8 1.43e-05 CTAGGCC CACAGTAG GCCCC chr20:26189305-26189325 7 1.43e-05 GCCGGC CACAGTAG GCGACG chr11:64684665-64684685 11 2.12e-05 GGCTCCGCTG TTCACTAG AG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YWCAGTAG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:120497771-120497791 2.7e-06 12_[+5] chr22:50981078-50981098 1.4e-05 7_[+5]_5 chr20:26189305-26189325 1.4e-05 6_[+5]_6 chr11:64684665-64684685 2.1e-05 10_[+5]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YWCAGTAG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YWCAGTAG width=8 seqs=4 chr7:120497771-120497791 ( 13) TTAAGTAG 1 chr22:50981078-50981098 ( 8) CACAGTAG 1 chr20:26189305-26189325 ( 7) CACAGTAG 1 chr11:64684665-64684685 ( 11) TTCACTAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YWCAGTAG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.4021 E= 5.9e+003 -865 42 -865 186 209 -865 -865 186 109 101 -865 -865 309 -865 -865 -865 -865 -58 101 -865 -865 -865 -865 286 309 -865 -865 -865 -865 -865 142 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YWCAGTAG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 5.9e+003 0.000000 0.500000 0.000000 0.500000 0.500000 0.000000 0.000000 0.500000 0.250000 0.750000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YWCAGTAG MEME-5 regular expression -------------------------------------------------------------------------------- [CT][AT][CA]A[GC]TAG -------------------------------------------------------------------------------- Time 6.93 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr22:41698302-41698322 7.07e-01 20 chr3:179041524-179041544 4.36e-01 20 chr19:4065671-4065691 9.51e-01 20 chr5:137688647-137688667 6.85e-01 20 chr18:60383399-60383419 9.93e-01 20 chr17:47439157-47439177 9.94e-01 20 chr2:38603681-38603701 5.42e-01 20 chr3:168867366-168867386 6.57e-01 20 chr1:224621979-224621999 4.76e-01 20 chr1:229693895-229693915 9.92e-02 20 chr2:128459799-128459819 9.73e-01 20 chr18:60192019-60192039 9.52e-01 20 chr19:16738469-16738489 6.64e-01 20 chr5:158526216-158526236 1.80e-01 20 chr7:129251838-129251858 4.38e-01 20 chr17:29335457-29335477 5.97e-01 20 chr6:168228567-168228587 5.42e-02 20 chr5:176561185-176561205 9.98e-01 20 chr3:182698073-182698093 5.85e-01 20 chr6:90062126-90062146 4.29e-01 20 chr19:12996506-12996526 7.51e-02 20 chr5:141488682-141488702 2.18e-01 20 chr6:119216286-119216306 5.72e-01 20 chr20:2505236-2505256 6.71e-02 20 chr1:225997823-225997843 3.87e-01 20 chr2:48132443-48132463 9.99e-01 20 chr10:181843-181863 1.00e+00 20 chr12:42631449-42631469 4.79e-02 20 chr12:125051866-12505188 9.45e-01 20 chr22:38901671-38901691 9.66e-01 20 chr10:103454077-10345409 9.13e-01 20 chr18:24127894-24127914 7.90e-01 20 chr7:148396211-148396231 7.42e-01 20 chr14:31676694-31676714 8.74e-01 20 chr11:32914911-32914931 4.48e-03 2_[+3(4.73e-06)]_10 chr8:87526985-87527005 6.92e-01 20 chr2:225449608-225449628 1.00e+00 20 chr17:66755703-66755723 1.25e-02 20 chr6:157100656-157100676 2.94e-03 7_[+4(1.46e-05)]_5 chr9:36487578-36487598 7.12e-02 20 chr6:106534309-106534329 9.95e-01 20 chr12:122017273-12201729 4.08e-01 20 chr17:76120831-76120851 1.38e-01 20 chr10:22614740-22614760 1.00e+00 20 chr21:37802356-37802376 4.97e-04 20 chr8:126442885-126442905 8.73e-01 20 chr5:138730012-138730032 4.14e-01 20 chr7:135194587-135194607 7.43e-01 20 chr11:109964418-10996443 1.28e-01 20 chr19:48894027-48894047 1.10e-04 7_[+2(2.16e-06)]_5 chr16:58034419-58034439 2.22e-01 20 chr17:46620880-46620900 2.87e-01 20 chr1:154193749-154193769 4.55e-01 20 chr1:53387350-53387370 2.68e-01 20 chr2:85199200-85199220 8.69e-01 20 chr10:115861008-11586102 9.84e-01 20 chr15:56535647-56535667 1.86e-01 20 chr5:77944984-77945004 6.75e-01 20 chr9:35071915-35071935 7.20e-01 20 chr13:21347755-21347775 2.10e-01 20 chr7:559833-559853 6.97e-01 20 chr12:104609578-10460959 8.29e-01 20 chr3:25705971-25705991 5.84e-01 20 chr15:72767468-72767488 5.51e-01 20 chr4:114682755-114682775 3.15e-01 20 chr15:85176860-85176880 2.15e-01 20 chr2:166810052-166810072 7.60e-02 20 chr2:191208883-191208903 9.81e-01 20 chr1:46767886-46767906 9.99e-01 20 chr3:47204875-47204895 1.56e-01 20 chr15:41166016-41166036 2.10e-01 20 chr16:90015129-90015149 2.89e-02 20 chr6:161412521-161412541 8.15e-01 20 chr8:38239464-38239484 5.06e-03 2_[+4(2.59e-06)]_10 chr16:69345698-69345718 2.61e-01 20 chr11:63753397-63753417 5.88e-03 20 chr8:59571799-59571819 9.77e-01 20 chr4:122617931-122617951 8.50e-01 20 chr20:62680613-62680633 4.76e-01 20 chr5:130500335-130500355 7.89e-01 20 chr6:42531968-42531988 2.38e-01 20 chr12:6876057-6876077 5.11e-02 20 chr10:88281219-88281239 3.40e-02 20 chr11:11863732-11863752 3.89e-02 20 chr6:170124986-170125006 1.10e-01 20 chr2:85197816-85197836 7.79e-01 20 chr12:116714963-11671498 3.61e-01 20 chr1:59282051-59282071 9.02e-01 20 chr2:230785068-230785088 1.36e-01 20 chr11:66880888-66880908 5.61e-03 20 chr2:206950548-206950568 8.16e-01 20 chr15:93257941-93257961 5.14e-01 20 chr7:120497771-120497791 8.50e-04 12_[+5(2.65e-06)] chr6:116692434-116692454 9.79e-01 20 chr14:60632090-60632110 5.75e-01 20 chr9:140083674-140083694 7.90e-01 20 chr10:116581878-11658189 4.08e-01 20 chr7:77044912-77044932 9.99e-01 20 chr5:125759191-125759211 9.57e-01 20 chr11:128564240-12856426 9.97e-01 20 chr2:160568495-160568515 1.66e-01 20 chr2:133015230-133015250 1.92e-01 20 chr17:79319610-79319630 8.98e-01 20 chr8:141644465-141644485 9.97e-01 20 chr8:62626765-62626785 6.23e-01 20 chr18:29598628-29598648 9.97e-01 20 chr19:33864881-33864901 3.22e-01 20 chr12:32832626-32832646 9.97e-01 20 chrX:54070562-54070582 3.36e-02 20 chr18:9335220-9335240 7.27e-01 20 chr2:182757009-182757029 9.94e-01 20 chr20:1875235-1875255 7.24e-01 20 chr18:56338796-56338816 6.19e-02 20 chr18:52989819-52989839 5.02e-02 20 chr5:36877547-36877567 9.74e-05 8_[+2(5.86e-07)]_4 chr20:45317776-45317796 1.46e-02 9_[+1(5.92e-05)]_3 chr5:151150150-151150170 1.78e-01 20 chr14:53162249-53162269 9.98e-01 20 chr17:61851813-61851833 1.25e-01 20 chr1:52608332-52608352 6.33e-02 20 chr19:12751043-12751063 3.24e-01 20 chr6:170123720-170123740 9.98e-01 20 chr15:64125714-64125734 2.53e-01 20 chr6:56708184-56708204 8.08e-01 20 chr12:56321589-56321609 8.31e-01 20 chr16:89895023-89895043 1.19e-02 20 chr15:54270626-54270646 4.24e-06 10_[+3(1.13e-06)]_2 chr7:6414549-6414569 9.55e-01 20 chr14:77843276-77843296 9.22e-01 20 chr11:9483025-9483045 9.00e-01 20 chr7:77045861-77045881 9.68e-01 20 chr6:43738892-43738912 4.35e-02 20 chr12:133338842-13333886 9.99e-01 20 chr9:71320217-71320237 2.54e-01 20 chr2:174830431-174830451 2.15e-01 20 chr3:127174639-127174659 7.94e-01 20 chr8:29208625-29208645 9.44e-01 20 chr3:141206681-141206701 1.79e-02 [+1(5.92e-05)]_12 chr15:91073758-91073778 1.60e-01 20 chr1:1840303-1840323 2.79e-01 20 chr6:127588431-127588451 3.46e-02 20 chr15:91073307-91073327 9.98e-01 20 chr10:79597461-79597481 9.61e-01 20 chr6:160148877-160148897 2.19e-01 20 chr9:98271300-98271320 6.77e-01 20 chr8:65494329-65494349 4.23e-03 20 chr7:89841148-89841168 3.73e-01 20 chr6:119558610-119558630 1.93e-03 12_[+4(2.85e-06)] chr19:52034956-52034976 1.37e-02 4_[+1(5.92e-05)]_8 chr6:33756514-33756534 4.13e-03 20 chr1:52607737-52607757 2.19e-02 20 chr1:11724266-11724286 1.60e-01 20 chr12:88429550-88429570 8.14e-01 20 chr12:54719148-54719168 5.36e-01 20 chr1:23670342-23670362 1.64e-02 20 chr11:15671674-15671694 7.77e-01 20 chr16:14379208-14379228 1.81e-01 20 chr16:30787058-30787078 8.16e-01 20 chr11:63606826-63606846 4.95e-01 20 chr16:48278609-48278629 4.37e-01 20 chr2:120770470-120770490 6.97e-01 20 chr6:4021930-4021950 4.96e-01 20 chr15:65321686-65321706 9.91e-01 20 chr2:26569150-26569170 1.54e-02 20 chr11:77123011-77123031 9.45e-01 20 chr17:1465263-1465283 9.50e-01 20 chr10:13389384-13389404 9.09e-01 20 chr17:4643073-4643093 7.98e-01 20 chr7:128171599-128171619 9.93e-01 20 chr1:204463808-204463828 2.19e-01 20 chr1:6305246-6305266 2.24e-02 20 chr8:74207201-74207221 1.96e-01 20 chr11:44117307-44117327 7.66e-01 20 chr15:72766893-72766913 5.33e-01 20 chr9:130545546-130545566 2.41e-02 20 chr21:38739416-38739436 6.84e-01 20 chr15:91445731-91445751 1.74e-01 20 chr4:87515538-87515558 2.04e-01 20 chr10:6131212-6131232 1.61e-01 20 chr8:131371289-131371309 5.44e-01 20 chr16:75589883-75589903 1.40e-01 20 chr4:1341452-1341472 2.38e-01 20 chr4:699827-699847 1.79e-01 20 chr11:65292769-65292789 4.43e-01 20 chr10:104404719-10440473 4.97e-01 20 chr2:160472368-160472388 3.51e-01 20 chr17:11924434-11924454 8.60e-01 20 chr6:44233145-44233165 3.88e-01 20 chr9:96214636-96214656 8.38e-01 20 chr14:64320173-64320193 9.14e-01 20 chr8:28260150-28260170 5.68e-02 20 chr5:67584301-67584321 8.20e-01 20 chr12:56651956-56651976 9.84e-01 20 chr12:53846284-53846304 4.07e-01 20 chr5:36876058-36876078 4.29e-01 20 chr9:136214508-136214528 1.94e-02 20 chr6:28249368-28249388 8.66e-01 20 chr8:59572278-59572298 6.65e-01 20 chr21:33032617-33032637 9.76e-01 20 chr3:182511789-182511809 8.23e-01 20 chr22:35653697-35653717 3.47e-03 20 chr16:14580928-14580948 5.90e-01 20 chr7:1017686-1017706 4.49e-01 20 chr12:27933369-27933389 7.12e-01 20 chr11:64611996-64612016 5.98e-02 20 chr7:129074434-129074454 1.25e-02 20 chr10:94051130-94051150 7.81e-01 20 chr22:18506545-18506565 1.36e-01 20 chr8:99837657-99837677 5.51e-02 20 chr21:47879028-47879048 9.86e-01 20 chr1:154971706-154971726 2.58e-02 20 chr4:71704794-71704814 8.47e-01 20 chr11:64884905-64884925 7.24e-01 20 chr9:133710477-133710497 8.64e-01 20 chr15:65116297-65116317 1.10e-01 20 chr20:26189305-26189325 3.50e-04 6_[+5(1.43e-05)]_6 chr9:123691384-123691404 5.57e-01 20 chr19:18942964-18942984 3.78e-01 20 chr9:139736956-139736976 4.04e-02 20 chr11:47788629-47788649 9.54e-01 20 chr6:151711286-151711306 3.36e-01 20 chr15:91446275-91446295 7.25e-01 20 chr19:14142665-14142685 4.04e-01 20 chr1:36234965-36234985 7.42e-01 20 chr19:38146088-38146108 2.73e-01 20 chr22:50981078-50981098 2.48e-03 7_[+5(1.43e-05)]_5 chr11:64684665-64684685 2.69e-04 10_[+5(2.12e-05)]_2 chr3:150321333-150321353 3.18e-01 20 chr10:88471853-88471873 7.51e-01 20 chr17:34091229-34091249 1.13e-01 20 chr1:46216520-46216540 7.63e-01 20 chr6:107435604-107435624 5.23e-01 20 chr13:53227018-53227038 5.54e-02 20 chr3:126194401-126194421 2.03e-01 20 chr1:145029712-145029732 4.60e-02 20 chr16:56390417-56390437 5.78e-01 20 chr6:87861743-87861763 3.99e-01 20 chr19:49178769-49178789 3.76e-03 6_[+4(7.07e-06)]_6 chr2:54342646-54342666 9.66e-01 20 chr20:57225405-57225425 6.02e-01 20 chr17:75453490-75453510 4.20e-01 20 chr10:18948499-18948519 9.94e-01 20 chr6:56407583-56407603 2.91e-01 20 chr2:190539301-190539321 9.86e-01 20 chr16:89050356-89050376 1.46e-01 20 chr20:25371720-25371740 9.70e-01 20 chr18:2655996-2656016 8.85e-01 20 chr12:53273469-53273489 5.40e-01 20 chr12:8185350-8185370 6.83e-01 20 chr4:147097001-147097021 4.28e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n04.farnam.hpc.yale.internal ********************************************************************************