******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/TRIM22.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr16:2190746-2190766 1.0000 20 chr8:9688646-9688666 1.0000 20 chr1:181394207-181394227 1.0000 20 chr5:102116412-102116432 1.0000 20 chr12:52419406-52419426 1.0000 20 chr17:7236127-7236147 1.0000 20 chr17:44364207-44364227 1.0000 20 chr19:38734560-38734580 1.0000 20 chr17:6950329-6950349 1.0000 20 chr1:155196589-155196609 1.0000 20 chr5:1641887-1641907 1.0000 20 chr5:139013021-139013041 1.0000 20 chr2:97778192-97778212 1.0000 20 chr12:29470896-29470916 1.0000 20 chr14:106627059-10662707 1.0000 20 chr3:45082387-45082407 1.0000 20 chr6:30071031-30071051 1.0000 20 chr15:41151513-41151533 1.0000 20 chr11:18753667-18753687 1.0000 20 chr19:50073577-50073597 1.0000 20 chr7:25605654-25605674 1.0000 20 chr11:102164893-10216491 1.0000 20 chrX:62470315-62470335 1.0000 20 chr9:613953-613973 1.0000 20 chr1:160346483-160346503 1.0000 20 chr3:172179499-172179519 1.0000 20 chr10:102193704-10219372 1.0000 20 chr14:23399749-23399769 1.0000 20 chr12:8147995-8148015 1.0000 20 chr15:67196188-67196208 1.0000 20 chr22:36462291-36462311 1.0000 20 chr2:143792084-143792104 1.0000 20 chr12:14607211-14607231 1.0000 20 chr10:64353960-64353980 1.0000 20 chr18:74712596-74712616 1.0000 20 chr6:105932748-105932768 1.0000 20 chr17:66168716-66168736 1.0000 20 chrX:108729138-108729158 1.0000 20 chr15:75242878-75242898 1.0000 20 chr3:45079361-45079381 1.0000 20 chr14:75762937-75762957 1.0000 20 chr11:71511568-71511588 1.0000 20 chr14:107074633-10707465 1.0000 20 chr6:16332520-16332540 1.0000 20 chr6:158088432-158088452 1.0000 20 chr15:45410450-45410470 1.0000 20 chr6:132600871-132600891 1.0000 20 chr11:117688631-11768865 1.0000 20 chr22:40744234-40744254 1.0000 20 chr1:184191883-184191903 1.0000 20 chr2:152882462-152882482 1.0000 20 chr8:22432059-22432079 1.0000 20 chr19:10683170-10683190 1.0000 20 chr9:4988107-4988127 1.0000 20 chr16:56736118-56736138 1.0000 20 chr2:114148025-114148045 1.0000 20 chr14:103857583-10385760 1.0000 20 chr5:137371830-137371850 1.0000 20 chr9:5976887-5976907 1.0000 20 chr6:42694518-42694538 1.0000 20 chr19:3104273-3104293 1.0000 20 chr16:30933072-30933092 1.0000 20 chr2:27906560-27906580 1.0000 20 chr1:203307737-203307757 1.0000 20 chr5:126828793-126828813 1.0000 20 chr3:183968223-183968243 1.0000 20 chr9:110103629-110103649 1.0000 20 chr2:171265715-171265735 1.0000 20 chr11:66153807-66153827 1.0000 20 chr2:99266052-99266072 1.0000 20 chr11:128027938-12802795 1.0000 20 chr7:142912343-142912363 1.0000 20 chr20:11993083-11993103 1.0000 20 chr14:23538274-23538294 1.0000 20 chr5:115911911-115911931 1.0000 20 chr5:90680842-90680862 1.0000 20 chr5:126900054-126900074 1.0000 20 chr14:50787914-50787934 1.0000 20 chr3:105088789-105088809 1.0000 20 chr14:23341958-23341978 1.0000 20 chr15:22462202-22462222 1.0000 20 chr10:109964359-10996437 1.0000 20 chr1:9241509-9241529 1.0000 20 chr1:23961651-23961671 1.0000 20 chr1:161261550-161261570 1.0000 20 chr3:116489886-116489906 1.0000 20 chr2:223555492-223555512 1.0000 20 chr9:35826226-35826246 1.0000 20 chr1:85410796-85410816 1.0000 20 chr17:33866557-33866577 1.0000 20 chr15:22436255-22436275 1.0000 20 chr4:76498920-76498940 1.0000 20 chr2:98207423-98207443 1.0000 20 chr1:159130971-159130991 1.0000 20 chrX:118650407-118650427 1.0000 20 chr10:73656368-73656388 1.0000 20 chr1:46645423-46645443 1.0000 20 chr21:27174047-27174067 1.0000 20 chr1:51339347-51339367 1.0000 20 chr3:187465952-187465972 1.0000 20 chr20:35185074-35185094 1.0000 20 chr21:38349487-38349507 1.0000 20 chr12:69551015-69551035 1.0000 20 chr17:70114904-70114924 1.0000 20 chr20:30679834-30679854 1.0000 20 chr12:57977259-57977279 1.0000 20 chr5:110494003-110494023 1.0000 20 chr7:2926805-2926825 1.0000 20 chr9:92989260-92989280 1.0000 20 chr4:171180917-171180937 1.0000 20 chr1:86965841-86965861 1.0000 20 chr10:30648793-30648813 1.0000 20 chr7:100721018-100721038 1.0000 20 chrX:22003590-22003610 1.0000 20 chr1:8621294-8621314 1.0000 20 chr17:34131909-34131929 1.0000 20 chr3:47830752-47830772 1.0000 20 chr19:42299165-42299185 1.0000 20 chr17:33860505-33860525 1.0000 20 chr11:88277700-88277720 1.0000 20 chr2:220142565-220142585 1.0000 20 chr1:8229973-8229993 1.0000 20 chr5:131862586-131862606 1.0000 20 chr1:21695176-21695196 1.0000 20 chr2:61653579-61653599 1.0000 20 chr13:33802876-33802896 1.0000 20 chr7:99730424-99730444 1.0000 20 chr9:92164125-92164145 1.0000 20 chr9:100686123-100686143 1.0000 20 chr6:30098947-30098967 1.0000 20 chr2:135208612-135208632 1.0000 20 chr11:74959869-74959889 1.0000 20 chr1:144918193-144918213 1.0000 20 chr1:180221946-180221966 1.0000 20 chr1:148532105-148532125 1.0000 20 chr5:76070570-76070590 1.0000 20 chr17:32527132-32527152 1.0000 20 chr3:12761734-12761754 1.0000 20 chr14:24777469-24777489 1.0000 20 chr8:62008850-62008870 1.0000 20 chr1:201377695-201377715 1.0000 20 chr1:201377485-201377505 1.0000 20 chr1:12184983-12185003 1.0000 20 chr3:183187304-183187324 1.0000 20 chr6:136547528-136547548 1.0000 20 chr2:231476248-231476268 1.0000 20 chr6:110026587-110026607 1.0000 20 chr12:53374814-53374834 1.0000 20 chr2:7237581-7237601 1.0000 20 chr21:37485238-37485258 1.0000 20 chr19:46898975-46898995 1.0000 20 chr17:35730656-35730676 1.0000 20 chr8:90738200-90738220 1.0000 20 chr20:47950632-47950652 1.0000 20 chr11:62630261-62630281 1.0000 20 chr16:90148497-90148517 1.0000 20 chr3:140911289-140911309 1.0000 20 chr14:25148300-25148320 1.0000 20 chr1:32986199-32986219 1.0000 20 chr12:92964199-92964219 1.0000 20 chr15:91477692-91477712 1.0000 20 chr22:23301528-23301548 1.0000 20 chr11:62673608-62673628 1.0000 20 chr10:112114215-11211423 1.0000 20 chr12:51159219-51159239 1.0000 20 chr7:150869819-150869839 1.0000 20 chr15:44611792-44611812 1.0000 20 chr10:105245615-10524563 1.0000 20 chr1:150952138-150952158 1.0000 20 chr11:19092917-19092937 1.0000 20 chr1:203238362-203238382 1.0000 20 chr6:32383380-32383400 1.0000 20 chr6:132601076-132601096 1.0000 20 chr17:26875309-26875329 1.0000 20 chr11:34381042-34381062 1.0000 20 chr2:100997836-100997856 1.0000 20 chr11:121192507-12119252 1.0000 20 chrX:73770316-73770336 1.0000 20 chr9:34379488-34379508 1.0000 20 chr16:8617885-8617905 1.0000 20 chr15:90701222-90701242 1.0000 20 chrX:100023915-100023935 1.0000 20 chr22:30485042-30485062 1.0000 20 chr6:41336784-41336804 1.0000 20 chr15:38732640-38732660 1.0000 20 chr12:78319556-78319576 1.0000 20 chr1:1440438-1440458 1.0000 20 chrX:12965081-12965101 1.0000 20 chr17:45078685-45078705 1.0000 20 chr13:33591902-33591922 1.0000 20 chr6:157735924-157735944 1.0000 20 chr3:46120464-46120484 1.0000 20 chr12:51735359-51735379 1.0000 20 chr2:30934644-30934664 1.0000 20 chr12:53937398-53937418 1.0000 20 chr16:25245204-25245224 1.0000 20 chr19:7406155-7406175 1.0000 20 chr8:82754728-82754748 1.0000 20 chr4:156708448-156708468 1.0000 20 chr14:23764401-23764421 1.0000 20 chr12:4105159-4105179 1.0000 20 chr3:58203100-58203120 1.0000 20 chr10:73808463-73808483 1.0000 20 chr16:30640273-30640293 1.0000 20 chr9:135897898-135897918 1.0000 20 chr7:44627849-44627869 1.0000 20 chr9:127474383-127474403 1.0000 20 chr2:44706719-44706739 1.0000 20 chr2:216979536-216979556 1.0000 20 chr12:54140596-54140616 1.0000 20 chr6:31461717-31461737 1.0000 20 chr2:219712574-219712594 1.0000 20 chr6:26066301-26066321 1.0000 20 chr1:201482256-201482276 1.0000 20 chr17:34274275-34274295 1.0000 20 chr11:59052126-59052146 1.0000 20 chr7:38375397-38375417 1.0000 20 chr6:138026631-138026651 1.0000 20 chr12:15743467-15743487 1.0000 20 chr4:103352658-103352678 1.0000 20 chr12:54773610-54773630 1.0000 20 chr12:54426583-54426603 1.0000 20 chr12:111028783-11102880 1.0000 20 chr20:32900673-32900693 1.0000 20 chr10:112370236-11237025 1.0000 20 chr8:141477475-141477495 1.0000 20 chr21:34733689-34733709 1.0000 20 chr17:27077276-27077296 1.0000 20 chr11:60253550-60253570 1.0000 20 chr10:88699326-88699346 1.0000 20 chr19:3327140-3327160 1.0000 20 chr17:34476512-34476532 1.0000 20 chr3:15244353-15244373 1.0000 20 chr19:50184136-50184156 1.0000 20 chr14:23590163-23590183 1.0000 20 chr22:37252587-37252607 1.0000 20 chr3:194193192-194193212 1.0000 20 chr1:101823094-101823114 1.0000 20 chr1:25428081-25428101 1.0000 20 chr1:201405001-201405021 1.0000 20 chr14:71284555-71284575 1.0000 20 chr7:100323075-100323095 1.0000 20 chr2:58133466-58133486 1.0000 20 chr10:105648221-10564824 1.0000 20 chr2:91815189-91815209 1.0000 20 chr10:88720348-88720368 1.0000 20 chr7:23586767-23586787 1.0000 20 chr9:33722277-33722297 1.0000 20 chr17:48278111-48278131 1.0000 20 chr6:70545764-70545784 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_TRIM22/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/TRIM22.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.235 C 0.264 G 0.267 T 0.235 Background letter frequencies (from file dataset with add-one prior applied): A 0.235 C 0.264 G 0.267 T 0.235 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF YGCCCYCT MEME-1 width = 8 sites = 39 llr = 286 E-value = 2.6e-018 ******************************************************************************** -------------------------------------------------------------------------------- Motif YGCCCYCT MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::::3:11 pos.-specific C 4:8a769: probability G :9:::::: matrix T 612::4:9 bits 2.1 1.9 1.7 * 1.5 * * ** Relative 1.3 *** ** Entropy 1.0 ******* (10.6 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGCCCCCT consensus C AT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCCCYCT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr9:92164125-92164145 11 1.89e-05 tgctctctgg tgccccct gc chr7:100323075-100323095 4 3.57e-05 CAG TGCCCTCT TCAGGTCTT chr12:54773610-54773630 13 3.57e-05 GTGCACCTGC TGCCCTCT chr2:231476248-231476268 13 3.57e-05 AAGTCTACAC TGCCCTCT chr2:27906560-27906580 4 3.57e-05 TAC TGCCCTCT GGTGGCAGA chr1:184191883-184191903 1 3.57e-05 . TGCCCTCT GCTGGCCATC chr22:40744234-40744254 10 3.57e-05 TGGCCGTGC TGCCCTCT GCT chr22:37252587-37252607 11 5.70e-05 CTGATCGCGG CGCCCCCT GG chr5:76070570-76070590 2 5.70e-05 G CGCCCCCT ACTGTCCACT chr21:27174047-27174067 9 5.70e-05 CTGCATTG CGCCCCCT AGAG chr9:110103629-110103649 6 5.70e-05 CGGCA CGCCCCCT TGTGGTG chr16:30933072-30933092 13 5.70e-05 GGAGATTGAG CGCCCCCT chr3:46120464-46120484 8 7.38e-05 ACTCTGG TGCCACCT GGTGG chr14:24777469-24777489 10 7.38e-05 TGTGTGTGC TGCCACCT ACT chr12:8147995-8148015 1 7.38e-05 . TGCCACCT GGTGGCCAAC chr1:150952138-150952158 10 9.27e-05 GGCTGCTGA CGCCCTCT TGT chr10:109964359-10996437 6 9.27e-05 AAGAG CGCCCTCT ATGAGTA chr19:10683170-10683190 13 9.27e-05 TGCTAACACG CGCCCTCT chr7:25605654-25605674 3 1.27e-04 GG CGCCACCT AGTGTCCATT chr16:56736118-56736138 10 1.43e-04 GACGTTTGC TGTCCCCT GGT chr1:160346483-160346503 5 1.43e-04 ACAC TGTCCCCT GCTGGCTA chr17:34476512-34476532 4 1.60e-04 TTG CGCCATCT ACTGGCAAT chr10:88720348-88720368 2 2.13e-04 G CGTCCCCT AGTGGTAAGA chr19:7406155-7406175 10 2.13e-04 GGGAAGTGC TGCCCCCA CGT chr17:48278111-48278131 1 2.45e-04 . TGCCCCAT CCCTGGCTTT chr10:105245615-10524563 3 2.45e-04 AG TGTCACCT AGTGGTGGCT chr1:203238362-203238382 13 2.95e-04 ATGGAAGTGG CGTCCTCT chr17:33860505-33860525 12 2.95e-04 atggaaacac tgccctca c chr14:106627059-10662707 5 3.45e-04 TGAG CGCCCCCA GGTGTCCT chr1:148532105-148532125 5 3.97e-04 CTGC TGCCACCA TGTGGTGA chr3:15244353-15244373 2 4.27e-04 G TGCCACAT ATGAACACAA chr16:25245204-25245224 10 4.27e-04 tctctccgc tgccacat ggt chr1:181394207-181394227 3 4.27e-04 TT TTCCCTCT TTTTCAGAAG chr12:54426583-54426603 12 4.65e-04 ttttttttcc ctccccct t chr7:142912343-142912363 3 7.09e-04 AT TGCTCCCT TTTCCGAGAG chr7:38375397-38375417 4 7.73e-04 GCA GGCCCTCT GCAGAAGAG chr11:60253550-60253570 11 9.03e-04 GTCACCATCA TGTCACCA TC chr2:152882462-152882482 2 9.03e-04 G CTCCATCT ATCTCCGTGT chr12:57977259-57977279 7 9.29e-04 GGTCAC TGTCACAT GTCCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCCCYCT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:92164125-92164145 1.9e-05 10_[+1]_2 chr7:100323075-100323095 3.6e-05 3_[+1]_9 chr12:54773610-54773630 3.6e-05 12_[+1] chr2:231476248-231476268 3.6e-05 12_[+1] chr2:27906560-27906580 3.6e-05 3_[+1]_9 chr1:184191883-184191903 3.6e-05 [+1]_12 chr22:40744234-40744254 3.6e-05 9_[+1]_3 chr22:37252587-37252607 5.7e-05 10_[+1]_2 chr5:76070570-76070590 5.7e-05 1_[+1]_11 chr21:27174047-27174067 5.7e-05 8_[+1]_4 chr9:110103629-110103649 5.7e-05 5_[+1]_7 chr16:30933072-30933092 5.7e-05 12_[+1] chr3:46120464-46120484 7.4e-05 7_[+1]_5 chr14:24777469-24777489 7.4e-05 9_[+1]_3 chr12:8147995-8148015 7.4e-05 [+1]_12 chr1:150952138-150952158 9.3e-05 9_[+1]_3 chr10:109964359-10996437 9.3e-05 5_[+1]_7 chr19:10683170-10683190 9.3e-05 12_[+1] chr7:25605654-25605674 0.00013 2_[+1]_10 chr16:56736118-56736138 0.00014 9_[+1]_3 chr1:160346483-160346503 0.00014 4_[+1]_8 chr17:34476512-34476532 0.00016 3_[+1]_9 chr10:88720348-88720368 0.00021 1_[+1]_11 chr19:7406155-7406175 0.00021 9_[+1]_3 chr17:48278111-48278131 0.00024 [+1]_12 chr10:105245615-10524563 0.00024 2_[+1]_10 chr1:203238362-203238382 0.0003 12_[+1] chr17:33860505-33860525 0.0003 11_[+1]_1 chr14:106627059-10662707 0.00034 4_[+1]_8 chr1:148532105-148532125 0.0004 4_[+1]_8 chr3:15244353-15244373 0.00043 1_[+1]_11 chr16:25245204-25245224 0.00043 9_[+1]_3 chr1:181394207-181394227 0.00043 2_[+1]_10 chr12:54426583-54426603 0.00046 11_[+1]_1 chr7:142912343-142912363 0.00071 2_[+1]_10 chr7:38375397-38375417 0.00077 3_[+1]_9 chr11:60253550-60253570 0.0009 10_[+1]_2 chr2:152882462-152882482 0.0009 1_[+1]_11 chr12:57977259-57977279 0.00093 6_[+1]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCCCYCT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YGCCCYCT width=8 seqs=39 chr9:92164125-92164145 ( 11) TGCCCCCT 1 chr7:100323075-100323095 ( 4) TGCCCTCT 1 chr12:54773610-54773630 ( 13) TGCCCTCT 1 chr2:231476248-231476268 ( 13) TGCCCTCT 1 chr2:27906560-27906580 ( 4) TGCCCTCT 1 chr1:184191883-184191903 ( 1) TGCCCTCT 1 chr22:40744234-40744254 ( 10) TGCCCTCT 1 chr22:37252587-37252607 ( 11) CGCCCCCT 1 chr5:76070570-76070590 ( 2) CGCCCCCT 1 chr21:27174047-27174067 ( 9) CGCCCCCT 1 chr9:110103629-110103649 ( 6) CGCCCCCT 1 chr16:30933072-30933092 ( 13) CGCCCCCT 1 chr3:46120464-46120484 ( 8) TGCCACCT 1 chr14:24777469-24777489 ( 10) TGCCACCT 1 chr12:8147995-8148015 ( 1) TGCCACCT 1 chr1:150952138-150952158 ( 10) CGCCCTCT 1 chr10:109964359-10996437 ( 6) CGCCCTCT 1 chr19:10683170-10683190 ( 13) CGCCCTCT 1 chr7:25605654-25605674 ( 3) CGCCACCT 1 chr16:56736118-56736138 ( 10) TGTCCCCT 1 chr1:160346483-160346503 ( 5) TGTCCCCT 1 chr17:34476512-34476532 ( 4) CGCCATCT 1 chr10:88720348-88720368 ( 2) CGTCCCCT 1 chr19:7406155-7406175 ( 10) TGCCCCCA 1 chr17:48278111-48278131 ( 1) TGCCCCAT 1 chr10:105245615-10524563 ( 3) TGTCACCT 1 chr1:203238362-203238382 ( 13) CGTCCTCT 1 chr17:33860505-33860525 ( 12) TGCCCTCA 1 chr14:106627059-10662707 ( 5) CGCCCCCA 1 chr1:148532105-148532125 ( 5) TGCCACCA 1 chr3:15244353-15244373 ( 2) TGCCACAT 1 chr16:25245204-25245224 ( 10) TGCCACAT 1 chr1:181394207-181394227 ( 3) TTCCCTCT 1 chr12:54426583-54426603 ( 12) CTCCCCCT 1 chr7:142912343-142912363 ( 3) TGCTCCCT 1 chr7:38375397-38375417 ( 4) GGCCCTCT 1 chr11:60253550-60253570 ( 11) TGTCACCA 1 chr2:152882462-152882482 ( 2) CTCCATCT 1 chr12:57977259-57977279 ( 7) TGTCACAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCCCYCT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.2019 E= 2.6e-018 -1193 55 -338 133 -1193 -1193 179 -161 -1193 164 -1193 -39 -1193 189 -1193 -319 39 139 -1193 -1193 -1193 122 -1193 71 -119 177 -1193 -1193 -87 -1193 -1193 189 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCCCYCT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 39 E= 2.6e-018 0.000000 0.384615 0.025641 0.589744 0.000000 0.000000 0.923077 0.076923 0.000000 0.820513 0.000000 0.179487 0.000000 0.974359 0.000000 0.025641 0.307692 0.692308 0.000000 0.000000 0.000000 0.615385 0.000000 0.384615 0.102564 0.897436 0.000000 0.000000 0.128205 0.000000 0.000000 0.871795 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCCCYCT MEME-1 regular expression -------------------------------------------------------------------------------- [TC]GCC[CA][CT]CT -------------------------------------------------------------------------------- Time 2.17 secs. ******************************************************************************** ******************************************************************************** MOTIF GGKGGCGC MEME-2 width = 8 sites = 20 llr = 166 E-value = 2.0e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGKGGCGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :3::::11 pos.-specific C ::1::a:9 probability G a76aa:9: matrix T :14:::1: bits 2.1 1.9 * *** 1.7 * *** 1.5 * *** * Relative 1.3 * ***** Entropy 1.0 * ***** (12.0 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGGGGCGC consensus AT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKGGCGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:216979536-216979556 6 2.53e-05 cctct gggggcgc tcgacca chr16:90148497-90148517 2 2.53e-05 A GGGGGCGC CCAGCCCCTG chr3:187465952-187465972 2 2.53e-05 T GGGGGCGC TGCAGAGCAA chrX:118650407-118650427 8 2.53e-05 agaggaa gggggcgc tattg chr15:22436255-22436275 5 2.53e-05 TACC GGGGGCGC TCAGGACC chr1:9241509-9241529 4 2.53e-05 GCA GGGGGCGC GCGCGTTCA chr14:23399749-23399769 4 2.53e-05 CTA GGGGGCGC TGTGTAATA chr6:138026631-138026651 5 4.75e-05 ACAG GGTGGCGC TGCAGTGC chr6:132601076-132601096 12 4.75e-05 CATGCCACAC GGTGGCGC C chr1:32986199-32986219 5 6.97e-05 aata gagggcgc cagaggga chr6:16332520-16332540 2 6.97e-05 A GAGGGCGC CCCAGGATGG chr15:38732640-38732660 7 8.93e-05 ccagta gatggcgc tgatgg chr11:62673608-62673628 8 8.93e-05 GCCGGCA GATGGCGC TAAAG chr1:180221946-180221966 4 1.34e-04 GCA GGGGGCGA TGTTGGTGT chr11:71511568-71511588 1 1.54e-04 . GGTGGCAC CACTGCCTTC chr9:135897898-135897918 9 1.73e-04 GGTCACCA GGTGGCGA TGTT chr6:31461717-31461737 6 2.20e-04 CGCGA GGCGGCGC TGTCACA chr15:91477692-91477712 5 2.43e-04 TGCA GGGGGCTC CTGCTGCA chr1:25428081-25428101 10 2.82e-04 GACCATTGA GTTGGCGC CCT chr5:126900054-126900074 4 2.82e-04 CTA GAGGGCAC CAGTTGCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKGGCGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:216979536-216979556 2.5e-05 5_[+2]_7 chr16:90148497-90148517 2.5e-05 1_[+2]_11 chr3:187465952-187465972 2.5e-05 1_[+2]_11 chrX:118650407-118650427 2.5e-05 7_[+2]_5 chr15:22436255-22436275 2.5e-05 4_[+2]_8 chr1:9241509-9241529 2.5e-05 3_[+2]_9 chr14:23399749-23399769 2.5e-05 3_[+2]_9 chr6:138026631-138026651 4.7e-05 4_[+2]_8 chr6:132601076-132601096 4.7e-05 11_[+2]_1 chr1:32986199-32986219 7e-05 4_[+2]_8 chr6:16332520-16332540 7e-05 1_[+2]_11 chr15:38732640-38732660 8.9e-05 6_[+2]_6 chr11:62673608-62673628 8.9e-05 7_[+2]_5 chr1:180221946-180221966 0.00013 3_[+2]_9 chr11:71511568-71511588 0.00015 [+2]_12 chr9:135897898-135897918 0.00017 8_[+2]_4 chr6:31461717-31461737 0.00022 5_[+2]_7 chr15:91477692-91477712 0.00024 4_[+2]_8 chr1:25428081-25428101 0.00028 9_[+2]_3 chr5:126900054-126900074 0.00028 3_[+2]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKGGCGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGKGGCGC width=8 seqs=20 chr2:216979536-216979556 ( 6) GGGGGCGC 1 chr16:90148497-90148517 ( 2) GGGGGCGC 1 chr3:187465952-187465972 ( 2) GGGGGCGC 1 chrX:118650407-118650427 ( 8) GGGGGCGC 1 chr15:22436255-22436275 ( 5) GGGGGCGC 1 chr1:9241509-9241529 ( 4) GGGGGCGC 1 chr14:23399749-23399769 ( 4) GGGGGCGC 1 chr6:138026631-138026651 ( 5) GGTGGCGC 1 chr6:132601076-132601096 ( 12) GGTGGCGC 1 chr1:32986199-32986219 ( 5) GAGGGCGC 1 chr6:16332520-16332540 ( 2) GAGGGCGC 1 chr15:38732640-38732660 ( 7) GATGGCGC 1 chr11:62673608-62673628 ( 8) GATGGCGC 1 chr1:180221946-180221966 ( 4) GGGGGCGA 1 chr11:71511568-71511588 ( 1) GGTGGCAC 1 chr9:135897898-135897918 ( 9) GGTGGCGA 1 chr6:31461717-31461737 ( 6) GGCGGCGC 1 chr15:91477692-91477712 ( 5) GGGGGCTC 1 chr1:25428081-25428101 ( 10) GTTGGCGC 1 chr5:126900054-126900074 ( 4) GAGGGCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKGGCGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.28309 E= 2.0e-006 -1097 -1097 190 -1097 9 -1097 139 -223 -1097 -240 117 58 -1097 -1097 190 -1097 -1097 -1097 190 -1097 -1097 192 -1097 -1097 -123 -1097 167 -223 -123 177 -1097 -1097 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKGGCGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 2.0e-006 0.000000 0.000000 1.000000 0.000000 0.250000 0.000000 0.700000 0.050000 0.000000 0.050000 0.600000 0.350000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.100000 0.000000 0.850000 0.050000 0.100000 0.900000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKGGCGC MEME-2 regular expression -------------------------------------------------------------------------------- G[GA][GT]GGCGC -------------------------------------------------------------------------------- Time 2.94 secs. ******************************************************************************** ******************************************************************************** MOTIF ASCAGAGR MEME-3 width = 8 sites = 16 llr = 129 E-value = 3.7e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif ASCAGAGR MEME-3 Description -------------------------------------------------------------------------------- Simplified A a::a3a36 pos.-specific C :58::::: probability G :5::8:84 matrix T ::3::::: bits 2.1 * * * 1.9 * * * 1.7 * * * 1.5 * * * Relative 1.3 * ** * Entropy 1.0 * ****** (11.6 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ACCAGAGA consensus GT A AG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ASCAGAGR MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:73770316-73770336 1 3.05e-05 . ACCAGAGA CAGTGCGAGA chr11:34381042-34381062 6 3.05e-05 AAGTC AGCAGAGA TCAAACT chr2:99266052-99266072 6 3.05e-05 GCAGT ACCAGAGA CAGAAAC chr12:53937398-53937418 5 6.51e-05 GGCC ACCAGAGG GTGTCTGT chr2:30934644-30934664 9 6.51e-05 caaggtat agcagagg acca chr7:99730424-99730444 2 6.51e-05 C ACCAGAGG GGAGTCTAGG chr21:38349487-38349507 10 6.51e-05 TCTTCGTCC AGCAGAGG GGA chr21:37485238-37485258 1 1.46e-04 . ACCAGAAA GAGTGAAAGG chr1:8229973-8229993 8 1.46e-04 TCTGCAG AGCAAAGA TCACG chr1:23961651-23961671 10 1.46e-04 TCCCTGGCG AGCAGAAA TTC chr11:18753667-18753687 11 1.46e-04 ACCCCAAAGC AGCAAAGA GT chr13:33802876-33802896 5 2.38e-04 GTCC ACTAGAGG CCTGTGAA chr2:220142565-220142585 6 2.38e-04 cagac actagagg ccgctgt chr7:44627849-44627869 5 3.09e-04 taga agcaaaaa gtagaatg chr1:144918193-144918213 4 3.09e-04 gtc agtaaaga cctcacaga chr3:45082387-45082407 4 3.90e-04 TCC ACTAGAAG GCACTGTTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ASCAGAGR MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:73770316-73770336 3e-05 [+3]_12 chr11:34381042-34381062 3e-05 5_[+3]_7 chr2:99266052-99266072 3e-05 5_[+3]_7 chr12:53937398-53937418 6.5e-05 4_[+3]_8 chr2:30934644-30934664 6.5e-05 8_[+3]_4 chr7:99730424-99730444 6.5e-05 1_[+3]_11 chr21:38349487-38349507 6.5e-05 9_[+3]_3 chr21:37485238-37485258 0.00015 [+3]_12 chr1:8229973-8229993 0.00015 7_[+3]_5 chr1:23961651-23961671 0.00015 9_[+3]_3 chr11:18753667-18753687 0.00015 10_[+3]_2 chr13:33802876-33802896 0.00024 4_[+3]_8 chr2:220142565-220142585 0.00024 5_[+3]_7 chr7:44627849-44627869 0.00031 4_[+3]_8 chr1:144918193-144918213 0.00031 3_[+3]_9 chr3:45082387-45082407 0.00039 3_[+3]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ASCAGAGR MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ASCAGAGR width=8 seqs=16 chrX:73770316-73770336 ( 1) ACCAGAGA 1 chr11:34381042-34381062 ( 6) AGCAGAGA 1 chr2:99266052-99266072 ( 6) ACCAGAGA 1 chr12:53937398-53937418 ( 5) ACCAGAGG 1 chr2:30934644-30934664 ( 9) AGCAGAGG 1 chr7:99730424-99730444 ( 2) ACCAGAGG 1 chr21:38349487-38349507 ( 10) AGCAGAGG 1 chr21:37485238-37485258 ( 1) ACCAGAAA 1 chr1:8229973-8229993 ( 8) AGCAAAGA 1 chr1:23961651-23961671 ( 10) AGCAGAAA 1 chr11:18753667-18753687 ( 11) AGCAAAGA 1 chr13:33802876-33802896 ( 5) ACTAGAGG 1 chr2:220142565-220142585 ( 6) ACTAGAGG 1 chr7:44627849-44627869 ( 5) AGCAAAAA 1 chr1:144918193-144918213 ( 4) AGTAAAGA 1 chr3:45082387-45082407 ( 4) ACTAGAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ASCAGAGR MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.39892 E= 3.7e+001 209 -1064 -1064 -1064 -1064 92 90 -1064 -1064 151 -1064 9 209 -1064 -1064 -1064 9 -1064 149 -1064 209 -1064 -1064 -1064 9 -1064 149 -1064 126 -1064 71 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ASCAGAGR MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 3.7e+001 1.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.750000 0.000000 0.250000 1.000000 0.000000 0.000000 0.000000 0.250000 0.000000 0.750000 0.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.000000 0.750000 0.000000 0.562500 0.000000 0.437500 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ASCAGAGR MEME-3 regular expression -------------------------------------------------------------------------------- A[CG][CT]A[GA]A[GA][AG] -------------------------------------------------------------------------------- Time 5.85 secs. ******************************************************************************** ******************************************************************************** MOTIF AGTGTCCA MEME-4 width = 8 sites = 7 llr = 66 E-value = 8.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGTGTCCA MEME-4 Description -------------------------------------------------------------------------------- Simplified A a::::::a pos.-specific C :3:::a9: probability G :7:a3::: matrix T ::a:7:1: bits 2.1 * * * 1.9 * ** * * 1.7 * ** * * 1.5 * ** * * Relative 1.3 * ****** Entropy 1.0 ******** (13.7 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGTGTCCA consensus C G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGTCCA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr14:25148300-25148320 7 1.52e-05 CCCTCT AGTGTCCA GACTGA chr11:66153807-66153827 3 1.52e-05 GG AGTGTCCA CAAGGGGGCA chr7:25605654-25605674 11 1.52e-05 GGCGCCACCT AGTGTCCA TT chr5:76070570-76070590 10 3.01e-05 GCGCCCCCT ACTGTCCA CTA chr17:66168716-66168736 10 4.74e-05 AATTTATCC AGTGGCCA CTA chr10:105648221-10564824 12 6.08e-05 CTACAGTTTC AGTGTCTA A chr11:19092917-19092937 10 7.79e-05 TAACCCTTG ACTGGCCA GCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGTCCA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr14:25148300-25148320 1.5e-05 6_[+4]_6 chr11:66153807-66153827 1.5e-05 2_[+4]_10 chr7:25605654-25605674 1.5e-05 10_[+4]_2 chr5:76070570-76070590 3e-05 9_[+4]_3 chr17:66168716-66168736 4.7e-05 9_[+4]_3 chr10:105648221-10564824 6.1e-05 11_[+4]_1 chr11:19092917-19092937 7.8e-05 9_[+4]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGTCCA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGTGTCCA width=8 seqs=7 chr14:25148300-25148320 ( 7) AGTGTCCA 1 chr11:66153807-66153827 ( 3) AGTGTCCA 1 chr7:25605654-25605674 ( 11) AGTGTCCA 1 chr5:76070570-76070590 ( 10) ACTGTCCA 1 chr17:66168716-66168736 ( 10) AGTGGCCA 1 chr10:105648221-10564824 ( 12) AGTGTCTA 1 chr11:19092917-19092937 ( 10) ACTGGCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGTCCA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.69928 E= 8.4e+003 209 -945 -945 -945 -945 12 142 -945 -945 -945 -945 209 -945 -945 190 -945 -945 -945 10 160 -945 192 -945 -945 -945 170 -945 -72 209 -945 -945 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGTCCA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 8.4e+003 1.000000 0.000000 0.000000 0.000000 0.000000 0.285714 0.714286 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.285714 0.714286 0.000000 1.000000 0.000000 0.000000 0.000000 0.857143 0.000000 0.142857 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGTCCA MEME-4 regular expression -------------------------------------------------------------------------------- A[GC]TG[TG]CCA -------------------------------------------------------------------------------- Time 8.72 secs. ******************************************************************************** ******************************************************************************** MOTIF TGCWGTTC MEME-5 width = 8 sites = 10 llr = 85 E-value = 1.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGCWGTTC MEME-5 Description -------------------------------------------------------------------------------- Simplified A 1::52::: pos.-specific C ::a1:::9 probability G :a::8:21 matrix T 9::4:a8: bits 2.1 * 1.9 ** * 1.7 *** * 1.5 *** * * Relative 1.3 *** **** Entropy 1.0 *** **** (12.3 bits) 0.8 *** **** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGCAGTTC consensus TA G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCWGTTC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:70545764-70545784 8 1.52e-05 ACTTGGT TGCAGTTC TAGAG chr1:12184983-12185003 13 1.52e-05 TTTTAGGACT TGCAGTTC chr5:115911911-115911931 7 3.03e-05 TACCCC TGCTGTTC TCCAGA chr20:32900673-32900693 2 7.42e-05 C TGCAGTGC AAACTCTTCC chr6:138026631-138026651 13 7.42e-05 AGGGTGGCGC TGCAGTGC chr10:73656368-73656388 6 7.42e-05 TCCCT TGCTATTC TAGGACT chr3:172179499-172179519 6 7.42e-05 cccac tgctattc tctctct chr12:52419406-52419426 6 1.08e-04 ttatg tgccgttc tcttata chr17:34131909-34131929 8 1.39e-04 ctggtaa agcagttc agatc chr2:58133466-58133486 3 1.54e-04 TA TGCTGTTG CACTAAGTAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCWGTTC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:70545764-70545784 1.5e-05 7_[+5]_5 chr1:12184983-12185003 1.5e-05 12_[+5] chr5:115911911-115911931 3e-05 6_[+5]_6 chr20:32900673-32900693 7.4e-05 1_[+5]_11 chr6:138026631-138026651 7.4e-05 12_[+5] chr10:73656368-73656388 7.4e-05 5_[+5]_7 chr3:172179499-172179519 7.4e-05 5_[+5]_7 chr12:52419406-52419426 0.00011 5_[+5]_7 chr17:34131909-34131929 0.00014 7_[+5]_5 chr2:58133466-58133486 0.00015 2_[+5]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCWGTTC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGCWGTTC width=8 seqs=10 chr6:70545764-70545784 ( 8) TGCAGTTC 1 chr1:12184983-12185003 ( 13) TGCAGTTC 1 chr5:115911911-115911931 ( 7) TGCTGTTC 1 chr20:32900673-32900693 ( 2) TGCAGTGC 1 chr6:138026631-138026651 ( 13) TGCAGTGC 1 chr10:73656368-73656388 ( 6) TGCTATTC 1 chr3:172179499-172179519 ( 6) TGCTATTC 1 chr12:52419406-52419426 ( 6) TGCCGTTC 1 chr17:34131909-34131929 ( 8) AGCAGTTC 1 chr2:58133466-58133486 ( 3) TGCTGTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCWGTTC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.77211 E= 1.1e+004 -123 -997 -997 194 -997 -997 190 -997 -997 192 -997 -997 109 -140 -997 77 -23 -997 158 -997 -997 -997 -997 209 -997 -997 -42 177 -997 177 -141 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCWGTTC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 1.1e+004 0.100000 0.000000 0.000000 0.900000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.100000 0.000000 0.400000 0.200000 0.000000 0.800000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.200000 0.800000 0.000000 0.900000 0.100000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCWGTTC MEME-5 regular expression -------------------------------------------------------------------------------- TGC[AT][GA]T[TG]C -------------------------------------------------------------------------------- Time 11.43 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:2190746-2190766 9.08e-01 20 chr8:9688646-9688666 3.56e-01 20 chr1:181394207-181394227 1.51e-01 20 chr5:102116412-102116432 9.68e-01 20 chr12:52419406-52419426 1.80e-02 20 chr17:7236127-7236147 2.38e-01 20 chr17:44364207-44364227 2.22e-01 20 chr19:38734560-38734580 6.08e-01 20 chr17:6950329-6950349 4.85e-01 20 chr1:155196589-155196609 6.14e-01 20 chr5:1641887-1641907 4.03e-01 20 chr5:139013021-139013041 1.84e-01 20 chr2:97778192-97778212 8.70e-01 20 chr12:29470896-29470916 4.20e-01 20 chr14:106627059-10662707 1.39e-02 20 chr3:45082387-45082407 1.98e-02 20 chr6:30071031-30071051 5.02e-01 20 chr15:41151513-41151533 4.27e-01 20 chr11:18753667-18753687 8.91e-02 20 chr19:50073577-50073597 1.90e-01 20 chr7:25605654-25605674 7.70e-05 10_[+4(1.52e-05)]_2 chr11:102164893-10216491 6.03e-01 20 chrX:62470315-62470335 2.13e-01 20 chr9:613953-613973 8.02e-01 20 chr1:160346483-160346503 1.68e-03 20 chr3:172179499-172179519 1.07e-02 5_[+5(7.42e-05)]_7 chr10:102193704-10219372 6.42e-01 20 chr14:23399749-23399769 1.11e-02 3_[+2(2.53e-05)]_9 chr12:8147995-8148015 5.77e-04 [+1(7.38e-05)]_12 chr15:67196188-67196208 4.08e-01 20 chr22:36462291-36462311 1.28e-02 20 chr2:143792084-143792104 9.68e-01 20 chr12:14607211-14607231 9.12e-01 20 chr10:64353960-64353980 4.06e-01 20 chr18:74712596-74712616 7.10e-01 20 chr6:105932748-105932768 8.77e-02 20 chr17:66168716-66168736 7.28e-04 9_[+4(4.74e-05)]_3 chrX:108729138-108729158 3.86e-01 20 chr15:75242878-75242898 1.67e-01 20 chr3:45079361-45079381 3.15e-01 20 chr14:75762937-75762957 7.30e-01 20 chr11:71511568-71511588 8.52e-03 20 chr14:107074633-10707465 6.28e-01 20 chr6:16332520-16332540 2.67e-02 1_[+2(6.97e-05)]_11 chr6:158088432-158088452 9.64e-02 20 chr15:45410450-45410470 6.50e-01 20 chr6:132600871-132600891 9.15e-01 20 chr11:117688631-11768865 6.62e-01 20 chr22:40744234-40744254 5.79e-03 9_[+1(3.57e-05)]_3 chr1:184191883-184191903 8.19e-04 [+1(3.57e-05)]_12 chr2:152882462-152882482 4.38e-01 20 chr8:22432059-22432079 6.66e-01 20 chr19:10683170-10683190 8.74e-02 12_[+1(9.27e-05)] chr9:4988107-4988127 1.23e-01 20 chr16:56736118-56736138 3.26e-03 20 chr2:114148025-114148045 7.88e-01 20 chr14:103857583-10385760 5.70e-01 20 chr5:137371830-137371850 8.59e-01 20 chr9:5976887-5976907 1.90e-01 20 chr6:42694518-42694538 1.19e-01 20 chr19:3104273-3104293 2.31e-01 20 chr16:30933072-30933092 2.36e-02 12_[+1(5.70e-05)] chr2:27906560-27906580 1.90e-03 3_[+1(3.57e-05)]_9 chr1:203307737-203307757 3.68e-01 20 chr5:126828793-126828813 7.29e-02 20 chr3:183968223-183968243 7.17e-01 20 chr9:110103629-110103649 1.05e-01 5_[+1(5.70e-05)]_7 chr2:171265715-171265735 9.58e-01 20 chr11:66153807-66153827 1.33e-03 2_[+4(1.52e-05)]_10 chr2:99266052-99266072 6.50e-02 5_[+3(3.05e-05)]_7 chr11:128027938-12802795 2.19e-01 20 chr7:142912343-142912363 2.77e-01 20 chr20:11993083-11993103 4.94e-01 20 chr14:23538274-23538294 6.81e-01 20 chr5:115911911-115911931 1.73e-02 6_[+5(3.03e-05)]_6 chr5:90680842-90680862 6.16e-01 20 chr5:126900054-126900074 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chr21:38349487-38349507 9.53e-03 9_[+3(6.51e-05)]_3 chr12:69551015-69551035 6.87e-02 20 chr17:70114904-70114924 4.55e-01 20 chr20:30679834-30679854 5.20e-01 20 chr12:57977259-57977279 9.38e-02 20 chr5:110494003-110494023 1.46e-01 20 chr7:2926805-2926825 1.50e-01 20 chr9:92989260-92989280 8.04e-01 20 chr4:171180917-171180937 7.11e-01 20 chr1:86965841-86965861 7.15e-01 20 chr10:30648793-30648813 9.30e-01 20 chr7:100721018-100721038 8.99e-02 20 chrX:22003590-22003610 7.68e-01 20 chr1:8621294-8621314 3.19e-01 20 chr17:34131909-34131929 4.18e-02 20 chr3:47830752-47830772 9.98e-01 20 chr19:42299165-42299185 8.43e-01 20 chr17:33860505-33860525 1.94e-02 20 chr11:88277700-88277720 5.07e-01 20 chr2:220142565-220142585 6.03e-03 20 chr1:8229973-8229993 1.83e-02 20 chr5:131862586-131862606 7.02e-01 20 chr1:21695176-21695196 4.40e-01 20 chr2:61653579-61653599 7.11e-01 20 chr13:33802876-33802896 3.28e-02 20 chr7:99730424-99730444 2.12e-02 1_[+3(6.51e-05)]_11 chr9:92164125-92164145 1.06e-02 10_[+1(1.89e-05)]_2 chr9:100686123-100686143 9.14e-01 20 chr6:30098947-30098967 7.26e-01 20 chr2:135208612-135208632 3.76e-01 20 chr11:74959869-74959889 9.50e-01 20 chr1:144918193-144918213 1.79e-01 20 chr1:180221946-180221966 7.49e-02 20 chr1:148532105-148532125 8.99e-02 20 chr5:76070570-76070590 1.63e-04 1_[+1(5.70e-05)]_[+4(3.01e-05)]_3 chr17:32527132-32527152 3.64e-01 20 chr3:12761734-12761754 2.48e-01 20 chr14:24777469-24777489 3.67e-02 9_[+1(7.38e-05)]_3 chr8:62008850-62008870 3.44e-01 20 chr1:201377695-201377715 8.35e-02 20 chr1:201377485-201377505 2.77e-02 20 chr1:12184983-12185003 2.88e-02 12_[+5(1.52e-05)] chr3:183187304-183187324 2.57e-01 20 chr6:136547528-136547548 7.94e-01 20 chr2:231476248-231476268 3.63e-03 12_[+1(3.57e-05)] chr6:110026587-110026607 1.39e-01 20 chr12:53374814-53374834 3.24e-01 20 chr2:7237581-7237601 1.41e-01 20 chr21:37485238-37485258 6.76e-02 20 chr19:46898975-46898995 8.52e-01 20 chr17:35730656-35730676 3.79e-01 20 chr8:90738200-90738220 6.07e-01 20 chr20:47950632-47950652 5.65e-01 20 chr11:62630261-62630281 7.65e-01 20 chr16:90148497-90148517 1.34e-02 1_[+2(2.53e-05)]_11 chr3:140911289-140911309 4.26e-01 20 chr14:25148300-25148320 2.49e-02 6_[+4(1.52e-05)]_6 chr1:32986199-32986219 7.00e-03 4_[+2(6.97e-05)]_8 chr12:92964199-92964219 6.02e-01 20 chr15:91477692-91477712 1.44e-02 20 chr22:23301528-23301548 3.05e-01 20 chr11:62673608-62673628 1.41e-02 7_[+2(8.93e-05)]_5 chr10:112114215-11211423 2.25e-01 20 chr12:51159219-51159239 1.96e-01 20 chr7:150869819-150869839 7.17e-01 20 chr15:44611792-44611812 9.66e-01 20 chr10:105245615-10524563 1.10e-02 20 chr1:150952138-150952158 2.98e-02 9_[+1(9.27e-05)]_3 chr11:19092917-19092937 4.05e-02 9_[+4(7.79e-05)]_3 chr1:203238362-203238382 1.37e-02 20 chr6:32383380-32383400 3.17e-01 20 chr6:132601076-132601096 9.35e-03 11_[+2(4.75e-05)]_1 chr17:26875309-26875329 3.60e-01 20 chr11:34381042-34381062 1.54e-02 5_[+3(3.05e-05)]_7 chr2:100997836-100997856 9.17e-01 20 chr11:121192507-12119252 1.83e-01 20 chrX:73770316-73770336 1.15e-02 [+3(3.05e-05)]_12 chr9:34379488-34379508 1.24e-01 20 chr16:8617885-8617905 7.88e-01 20 chr15:90701222-90701242 8.14e-02 20 chrX:100023915-100023935 3.84e-01 20 chr22:30485042-30485062 4.99e-01 20 chr6:41336784-41336804 9.09e-01 20 chr15:38732640-38732660 8.11e-03 6_[+2(8.93e-05)]_6 chr12:78319556-78319576 3.74e-01 20 chr1:1440438-1440458 4.51e-01 20 chrX:12965081-12965101 1.71e-01 20 chr17:45078685-45078705 1.30e-01 20 chr13:33591902-33591922 8.25e-01 20 chr6:157735924-157735944 3.30e-01 20 chr3:46120464-46120484 8.85e-03 7_[+1(7.38e-05)]_5 chr12:51735359-51735379 1.13e-01 20 chr2:30934644-30934664 1.70e-02 8_[+3(6.51e-05)]_4 chr12:53937398-53937418 1.12e-03 4_[+3(6.51e-05)]_8 chr16:25245204-25245224 9.57e-02 20 chr19:7406155-7406175 5.90e-02 20 chr8:82754728-82754748 9.77e-01 20 chr4:156708448-156708468 1.89e-01 20 chr14:23764401-23764421 6.49e-01 20 chr12:4105159-4105179 2.18e-01 20 chr3:58203100-58203120 1.71e-01 20 chr10:73808463-73808483 1.02e-01 20 chr16:30640273-30640293 4.09e-01 20 chr9:135897898-135897918 1.54e-03 20 chr7:44627849-44627869 2.26e-01 20 chr9:127474383-127474403 7.41e-01 20 chr2:44706719-44706739 3.26e-01 20 chr2:216979536-216979556 2.98e-02 5_[+2(2.53e-05)]_7 chr12:54140596-54140616 6.80e-01 20 chr6:31461717-31461737 8.37e-02 20 chr2:219712574-219712594 5.49e-01 20 chr6:26066301-26066321 5.59e-02 20 chr1:201482256-201482276 6.49e-01 20 chr17:34274275-34274295 1.28e-02 20 chr11:59052126-59052146 6.98e-01 20 chr7:38375397-38375417 3.16e-02 20 chr6:138026631-138026651 4.82e-04 4_[+2(4.75e-05)]_[+5(7.42e-05)] chr12:15743467-15743487 5.31e-01 20 chr4:103352658-103352678 1.54e-01 20 chr12:54773610-54773630 1.70e-02 12_[+1(3.57e-05)] chr12:54426583-54426603 3.10e-01 20 chr12:111028783-11102880 8.76e-01 20 chr20:32900673-32900693 2.00e-02 1_[+5(7.42e-05)]_11 chr10:112370236-11237025 3.18e-01 20 chr8:141477475-141477495 4.87e-01 20 chr21:34733689-34733709 2.85e-01 20 chr17:27077276-27077296 1.74e-01 20 chr11:60253550-60253570 1.67e-01 20 chr10:88699326-88699346 5.90e-01 20 chr19:3327140-3327160 2.88e-01 20 chr17:34476512-34476532 5.71e-03 20 chr3:15244353-15244373 1.41e-01 20 chr19:50184136-50184156 2.69e-01 20 chr14:23590163-23590183 5.92e-01 20 chr22:37252587-37252607 1.88e-02 10_[+1(5.70e-05)]_2 chr3:194193192-194193212 3.95e-01 20 chr1:101823094-101823114 4.34e-01 20 chr1:25428081-25428101 1.16e-02 20 chr1:201405001-201405021 6.80e-01 20 chr14:71284555-71284575 5.78e-01 20 chr7:100323075-100323095 3.04e-03 3_[+1(3.57e-05)]_9 chr2:58133466-58133486 2.44e-02 20 chr10:105648221-10564824 2.36e-02 11_[+4(6.08e-05)]_1 chr2:91815189-91815209 1.20e-01 20 chr10:88720348-88720368 2.80e-02 20 chr7:23586767-23586787 3.40e-01 20 chr9:33722277-33722297 7.16e-01 20 chr17:48278111-48278131 1.04e-01 20 chr6:70545764-70545784 2.47e-02 7_[+5(1.52e-05)]_5 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n10.farnam.hpc.yale.internal ********************************************************************************