******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/TCF12.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr1:75197917-75197937 1.0000 20 chr21:45199791-45199811 1.0000 20 chr19:1123195-1123215 1.0000 20 chr6:4880101-4880121 1.0000 20 chr1:12100620-12100640 1.0000 20 chr12:104808629-10480864 1.0000 20 chr4:184644463-184644483 1.0000 20 chr6:18586605-18586625 1.0000 20 chr19:39988649-39988669 1.0000 20 chrX:15483634-15483654 1.0000 20 chr11:126059200-12605922 1.0000 20 chr7:530340-530360 1.0000 20 chr14:106048448-10604846 1.0000 20 chr18:66660166-66660186 1.0000 20 chr14:102345197-10234521 1.0000 20 chr2:17699750-17699770 1.0000 20 chr4:74469316-74469336 1.0000 20 chr16:12637333-12637353 1.0000 20 chr1:144966110-144966130 1.0000 20 chr16:25050001-25050021 1.0000 20 chr1:154810326-154810346 1.0000 20 chr19:3125287-3125307 1.0000 20 chr21:43881133-43881153 1.0000 20 chr11:126944139-12694415 1.0000 20 chr1:25799221-25799241 1.0000 20 chr2:46079802-46079822 1.0000 20 chr11:126058677-12605869 1.0000 20 chr1:203290275-203290295 1.0000 20 chr17:80309321-80309341 1.0000 20 chr2:8393690-8393710 1.0000 20 chr15:96407887-96407907 1.0000 20 chr7:102082220-102082240 1.0000 20 chr6:109226078-109226098 1.0000 20 chr11:26673652-26673672 1.0000 20 chr18:23747741-23747761 1.0000 20 chr7:137670509-137670529 1.0000 20 chr4:8393866-8393886 1.0000 20 chr4:84142961-84142981 1.0000 20 chr2:202870122-202870142 1.0000 20 chr14:67116467-67116487 1.0000 20 chr8:11315498-11315518 1.0000 20 chr15:68076961-68076981 1.0000 20 chr14:96661122-96661142 1.0000 20 chr7:34772714-34772734 1.0000 20 chr1:160721449-160721469 1.0000 20 chr3:129894239-129894259 1.0000 20 chr13:46951869-46951889 1.0000 20 chr10:104421158-10442117 1.0000 20 chr18:48680445-48680465 1.0000 20 chr17:40485242-40485262 1.0000 20 chr1:39738119-39738139 1.0000 20 chr3:53137073-53137093 1.0000 20 chr11:98969636-98969656 1.0000 20 chr2:197139430-197139450 1.0000 20 chr4:71544268-71544288 1.0000 20 chr1:113574071-113574091 1.0000 20 chr19:46385420-46385440 1.0000 20 chr22:22522366-22522386 1.0000 20 chr1:57603811-57603831 1.0000 20 chr7:154629525-154629545 1.0000 20 chr2:127736090-127736110 1.0000 20 chr17:66255347-66255367 1.0000 20 chr9:80531569-80531589 1.0000 20 chr11:191658-191678 1.0000 20 chr12:79462962-79462982 1.0000 20 chr3:178232059-178232079 1.0000 20 chr15:75301520-75301540 1.0000 20 chr19:4328541-4328561 1.0000 20 chr17:27065868-27065888 1.0000 20 chr22:19607040-19607060 1.0000 20 chr7:37955315-37955335 1.0000 20 chr6:43682839-43682859 1.0000 20 chr16:5206669-5206689 1.0000 20 chr10:58394040-58394060 1.0000 20 chr1:108320150-108320170 1.0000 20 chr9:71581770-71581790 1.0000 20 chr2:112463535-112463555 1.0000 20 chr1:11028746-11028766 1.0000 20 chr22:25882279-25882299 1.0000 20 chr3:56951906-56951926 1.0000 20 chr10:22989606-22989626 1.0000 20 chr20:3780614-3780634 1.0000 20 chr3:13373876-13373896 1.0000 20 chr21:45563372-45563392 1.0000 20 chr15:40347048-40347068 1.0000 20 chr1:36201538-36201558 1.0000 20 chr11:115810593-11581061 1.0000 20 chr5:118058884-118058904 1.0000 20 chr3:13064912-13064932 1.0000 20 chr8:41480592-41480612 1.0000 20 chr1:31950006-31950026 1.0000 20 chr1:231347327-231347347 1.0000 20 chr22:46983719-46983739 1.0000 20 chr12:8771909-8771929 1.0000 20 chr15:66446491-66446511 1.0000 20 chr4:84133810-84133830 1.0000 20 chr7:2208080-2208100 1.0000 20 chr4:121670812-121670832 1.0000 20 chr10:46222631-46222651 1.0000 20 chr1:233811882-233811902 1.0000 20 chr14:102343043-10234306 1.0000 20 chr15:44068500-44068520 1.0000 20 chr1:210567205-210567225 1.0000 20 chr22:30704690-30704710 1.0000 20 chr17:1496315-1496335 1.0000 20 chr8:23078687-23078707 1.0000 20 chr3:58188750-58188770 1.0000 20 chr3:194929113-194929133 1.0000 20 chr17:62962135-62962155 1.0000 20 chr5:129659965-129659985 1.0000 20 chr20:42310858-42310878 1.0000 20 chrX:48796183-48796203 1.0000 20 chr1:183881532-183881552 1.0000 20 chr1:76192726-76192746 1.0000 20 chr7:75292471-75292491 1.0000 20 chr7:2934406-2934426 1.0000 20 chr4:175849504-175849524 1.0000 20 chr17:56017282-56017302 1.0000 20 chr15:60832652-60832672 1.0000 20 chr20:19051513-19051533 1.0000 20 chr7:49925361-49925381 1.0000 20 chr18:20808344-20808364 1.0000 20 chr5:114545191-114545211 1.0000 20 chr7:136044305-136044325 1.0000 20 chr22:29188300-29188320 1.0000 20 chr1:82064450-82064470 1.0000 20 chr16:89045273-89045293 1.0000 20 chr19:46386197-46386217 1.0000 20 chr19:7894887-7894907 1.0000 20 chr11:41330977-41330997 1.0000 20 chr6:138777330-138777350 1.0000 20 chr19:14228685-14228705 1.0000 20 chr1:66868086-66868106 1.0000 20 chr11:102292155-10229217 1.0000 20 chr15:89200108-89200128 1.0000 20 chr12:76353999-76354019 1.0000 20 chr11:18791590-18791610 1.0000 20 chr10:103663811-10366383 1.0000 20 chr12:46502721-46502741 1.0000 20 chr19:511452-511472 1.0000 20 chr17:3462022-3462042 1.0000 20 chr8:145159274-145159294 1.0000 20 chr16:56944847-56944867 1.0000 20 chrX:22081574-22081594 1.0000 20 chr19:6372663-6372683 1.0000 20 chr15:89631522-89631542 1.0000 20 chr1:221330918-221330938 1.0000 20 chr6:26361038-26361058 1.0000 20 chr1:175276492-175276512 1.0000 20 chr5:6728275-6728295 1.0000 20 chr5:142554742-142554762 1.0000 20 chrX:31247234-31247254 1.0000 20 chr13:20532757-20532777 1.0000 20 chr13:52531797-52531817 1.0000 20 chr22:24186777-24186797 1.0000 20 chr12:113436987-11343700 1.0000 20 chr14:67117500-67117520 1.0000 20 chr1:192508204-192508224 1.0000 20 chr2:136964413-136964433 1.0000 20 chr20:46968093-46968113 1.0000 20 chr17:70585266-70585286 1.0000 20 chr16:87843263-87843283 1.0000 20 chr4:185275168-185275188 1.0000 20 chr11:59041023-59041043 1.0000 20 chr14:106167393-10616741 1.0000 20 chr19:4472128-4472148 1.0000 20 chr19:19496457-19496477 1.0000 20 chr8:61705526-61705546 1.0000 20 chr4:52709177-52709197 1.0000 20 chr6:32146078-32146098 1.0000 20 chr1:41819583-41819603 1.0000 20 chr6:135424241-135424261 1.0000 20 chr9:129159464-129159484 1.0000 20 chr1:143913422-143913442 1.0000 20 chr15:31558775-31558795 1.0000 20 chr4:48782501-48782521 1.0000 20 chrX:49047678-49047698 1.0000 20 chr4:850307-850327 1.0000 20 chr17:68984304-68984324 1.0000 20 chr11:71129951-71129971 1.0000 20 chr17:74667908-74667928 1.0000 20 chr5:6652287-6652307 1.0000 20 chr2:185309122-185309142 1.0000 20 chr9:101998340-101998360 1.0000 20 chr22:23274225-23274245 1.0000 20 chr3:128995443-128995463 1.0000 20 chr14:65754078-65754098 1.0000 20 chr12:123911743-12391176 1.0000 20 chr5:16067706-16067726 1.0000 20 chr16:1728151-1728171 1.0000 20 chr1:206603850-206603870 1.0000 20 chr2:216880938-216880958 1.0000 20 chr12:48277162-48277182 1.0000 20 chr7:100184175-100184195 1.0000 20 chr18:71959311-71959331 1.0000 20 chr2:17995116-17995136 1.0000 20 chr12:92865564-92865584 1.0000 20 chr17:40730798-40730818 1.0000 20 chr22:35696177-35696197 1.0000 20 chr13:41092818-41092838 1.0000 20 chr3:90089817-90089837 1.0000 20 chr5:55210059-55210079 1.0000 20 chr10:51827631-51827651 1.0000 20 chr9:29796484-29796504 1.0000 20 chr6:56631796-56631816 1.0000 20 chr4:148716133-148716153 1.0000 20 chr21:34681364-34681384 1.0000 20 chr16:89034685-89034705 1.0000 20 chr1:224971137-224971157 1.0000 20 chr5:131541594-131541614 1.0000 20 chr19:3133496-3133516 1.0000 20 chr1:82618475-82618495 1.0000 20 chr7:92442841-92442861 1.0000 20 chr10:2743018-2743038 1.0000 20 chr7:99819009-99819029 1.0000 20 chr10:5932073-5932093 1.0000 20 chr17:47866537-47866557 1.0000 20 chr10:98047686-98047706 1.0000 20 chrX:46988675-46988695 1.0000 20 chr2:67691143-67691163 1.0000 20 chr1:6845300-6845320 1.0000 20 chrX:46513536-46513556 1.0000 20 chr20:45035326-45035346 1.0000 20 chr19:45394349-45394369 1.0000 20 chr12:12868465-12868485 1.0000 20 chr16:21371692-21371712 1.0000 20 chr4:171341574-171341594 1.0000 20 chr1:167597468-167597488 1.0000 20 chr3:111832898-111832918 1.0000 20 chr22:48441396-48441416 1.0000 20 chr10:88428745-88428765 1.0000 20 chr17:25544858-25544878 1.0000 20 chr11:118566652-11856667 1.0000 20 chr21:43889544-43889564 1.0000 20 chr19:11457085-11457105 1.0000 20 chr17:16884789-16884809 1.0000 20 chr5:107148436-107148456 1.0000 20 chr17:70600892-70600912 1.0000 20 chr19:4968850-4968870 1.0000 20 chr19:18303790-18303810 1.0000 20 chr16:2518981-2519001 1.0000 20 chr17:26368608-26368628 1.0000 20 chr8:56903722-56903742 1.0000 20 chr7:916008-916028 1.0000 20 chr5:150594333-150594353 1.0000 20 chr6:130838714-130838734 1.0000 20 chr2:191448018-191448038 1.0000 20 chr7:10980263-10980283 1.0000 20 chr6:88845662-88845682 1.0000 20 chr10:102821149-10282116 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_TCF12/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/TCF12.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.234 C 0.263 G 0.258 T 0.244 Background letter frequencies (from file dataset with add-one prior applied): A 0.234 C 0.263 G 0.258 T 0.244 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF NVCAGCTG MEME-1 width = 8 sites = 48 llr = 351 E-value = 1.9e-030 ******************************************************************************** -------------------------------------------------------------------------------- Motif NVCAGCTG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 33:a:::: pos.-specific C 23a:37:: probability G 24::73:a matrix T 3:::::a: bits 2.1 * * 1.9 ** ** 1.7 ** ** 1.5 ** ** Relative 1.3 ** ** Entropy 1.0 ****** (10.6 bits) 0.8 ****** 0.6 ****** 0.4 ******* 0.2 ******* 0.0 -------- Multilevel AGCAGCTG consensus TC CG sequence CA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NVCAGCTG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr4:8393866-8393886 13 3.03e-05 gcagtgcgaa aacagctg chr14:65754078-65754098 8 6.30e-05 GTTCTCC ACCAGCTG CTTCA chr15:31558775-31558795 2 6.30e-05 C TGCAGCTG GGCCTGAGGG chr19:46385420-46385440 3 6.30e-05 CT ACCAGCTG TTCTTAAAGG chr11:126059200-12605922 2 6.30e-05 C TGCAGCTG CTCCAGCTGT chr1:206603850-206603870 1 9.58e-05 . TACAGCTG CTATTATGTG chr17:62962135-62962155 7 9.58e-05 GCGGTT CGCAGCTG CTGTGC chr1:108320150-108320170 5 9.58e-05 CAAT TACAGCTG GTCACCAC chr18:48680445-48680465 6 9.58e-05 GGTGT CGCAGCTG CCCCTAC chr1:75197917-75197937 12 9.58e-05 TCAAATCCCC TACAGCTG G chr4:850307-850327 13 1.29e-04 tgctcaccac cacagctg chr17:3462022-3462042 12 1.29e-04 GTGGACAAGA CACAGCTG G chr11:191658-191678 13 1.29e-04 aatgagatag cacagctg chr10:88428745-88428765 4 1.96e-04 ATG AGCAGGTG GTAGGTGTT chr1:224971137-224971157 12 1.96e-04 gtcagcaggc agcaggtg C chr16:89034685-89034705 6 1.96e-04 CGGGA AGCACCTG GCAGTTT chr9:101998340-101998360 5 1.96e-04 TGCT AGCACCTG CTGGGATG chr1:41819583-41819603 2 1.96e-04 C GGCAGCTG CAGAGAGAAT chr4:185275168-185275188 13 1.96e-04 tggtcacagc cccagctg chr1:192508204-192508224 10 1.96e-04 GCCACAAAG CCCAGCTG CAC chrX:31247234-31247254 6 1.96e-04 ATAGT AGCAGGTG TCAAAAT chr19:511452-511472 7 1.96e-04 AAAATA AGCAGGTG GGGCCT chr15:66446491-66446511 8 1.96e-04 CAGTGCC AGCAGGTG TGGCT chr3:53137073-53137093 13 1.96e-04 CTGGTTTCAC AGCAGGTG chr10:104421158-10442117 6 1.96e-04 TCGCT CCCAGCTG TCTTTGG chr21:45199791-45199811 13 1.96e-04 ggtgctggag cccagctg chr17:25544858-25544878 2 2.41e-04 c aACAGGTG TGCATTAACT chr3:13373876-13373896 4 2.41e-04 TCA AACACCTG CAAGAGAGG chr10:58394040-58394060 1 2.41e-04 . aacaggtg agccatctgc chr2:202870122-202870142 9 2.41e-04 ACTTTGCA AACAGGTG GTCC chr2:216880938-216880958 5 3.24e-04 CACT TGCACCTG GTGCCAAG chr7:49925361-49925381 6 3.24e-04 atgag tgcaggtg cttgcgg chr15:40347048-40347068 2 3.24e-04 T TGCACCTG CAGGCTGTGG chr16:25050001-25050021 3 3.24e-04 cc tgcacctg ctgtctttgc chr4:184644463-184644483 8 3.24e-04 TGTCTGC TGCACCTG GCCTC chr12:104808629-10480864 11 3.24e-04 actgaccaac accaggtg tc chr1:25799221-25799241 4 3.90e-04 CCC TACAGGTG GCTACACAA chr8:56903722-56903742 6 4.24e-04 TTGCC TCCACCTG GAGGAAG chr22:19607040-19607060 9 4.24e-04 CCACTTCC TCCACCTG CTCT chr17:40485242-40485262 11 4.56e-04 AAAACCCCAG CACACCTG TT chr17:70600892-70600912 8 5.43e-04 AGGACAT GGCAGGTG AGCAT chr1:11028746-11028766 8 5.43e-04 CTCCATC CCCACCTG GCGCT chr1:57603811-57603831 5 5.89e-04 TTTA GACACCTG CTAGGAGG chr21:43889544-43889564 7 6.58e-04 gtttct gccacctg tcctgg chrX:46513536-46513556 9 6.58e-04 TCATGTAg gccaggtg tggt chr18:20808344-20808364 7 6.58e-04 AGATTA GCCACCTG CTTTGA chr1:36201538-36201558 2 6.58e-04 g gccaggtg cagtgactca chr16:12637333-12637353 11 6.58e-04 TAAAGCCACA GCCACCTG TG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NVCAGCTG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:8393866-8393886 3e-05 12_[+1] chr14:65754078-65754098 6.3e-05 7_[+1]_5 chr15:31558775-31558795 6.3e-05 1_[+1]_11 chr19:46385420-46385440 6.3e-05 2_[+1]_10 chr11:126059200-12605922 6.3e-05 1_[+1]_11 chr1:206603850-206603870 9.6e-05 [+1]_12 chr17:62962135-62962155 9.6e-05 6_[+1]_6 chr1:108320150-108320170 9.6e-05 4_[+1]_8 chr18:48680445-48680465 9.6e-05 5_[+1]_7 chr1:75197917-75197937 9.6e-05 11_[+1]_1 chr4:850307-850327 0.00013 12_[+1] chr17:3462022-3462042 0.00013 11_[+1]_1 chr11:191658-191678 0.00013 12_[+1] chr10:88428745-88428765 0.0002 3_[+1]_9 chr1:224971137-224971157 0.0002 11_[+1]_1 chr16:89034685-89034705 0.0002 5_[+1]_7 chr9:101998340-101998360 0.0002 4_[+1]_8 chr1:41819583-41819603 0.0002 1_[+1]_11 chr4:185275168-185275188 0.0002 12_[+1] chr1:192508204-192508224 0.0002 9_[+1]_3 chrX:31247234-31247254 0.0002 5_[+1]_7 chr19:511452-511472 0.0002 6_[+1]_6 chr15:66446491-66446511 0.0002 7_[+1]_5 chr3:53137073-53137093 0.0002 12_[+1] chr10:104421158-10442117 0.0002 5_[+1]_7 chr21:45199791-45199811 0.0002 12_[+1] chr17:25544858-25544878 0.00024 1_[+1]_11 chr3:13373876-13373896 0.00024 3_[+1]_9 chr10:58394040-58394060 0.00024 [+1]_12 chr2:202870122-202870142 0.00024 8_[+1]_4 chr2:216880938-216880958 0.00032 4_[+1]_8 chr7:49925361-49925381 0.00032 5_[+1]_7 chr15:40347048-40347068 0.00032 1_[+1]_11 chr16:25050001-25050021 0.00032 2_[+1]_10 chr4:184644463-184644483 0.00032 7_[+1]_5 chr12:104808629-10480864 0.00032 10_[+1]_2 chr1:25799221-25799241 0.00039 3_[+1]_9 chr8:56903722-56903742 0.00042 5_[+1]_7 chr22:19607040-19607060 0.00042 8_[+1]_4 chr17:40485242-40485262 0.00046 10_[+1]_2 chr17:70600892-70600912 0.00054 7_[+1]_5 chr1:11028746-11028766 0.00054 7_[+1]_5 chr1:57603811-57603831 0.00059 4_[+1]_8 chr21:43889544-43889564 0.00066 6_[+1]_6 chrX:46513536-46513556 0.00066 8_[+1]_4 chr18:20808344-20808364 0.00066 6_[+1]_6 chr1:36201538-36201558 0.00066 1_[+1]_11 chr16:12637333-12637353 0.00066 10_[+1]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NVCAGCTG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF NVCAGCTG width=8 seqs=48 chr4:8393866-8393886 ( 13) AACAGCTG 1 chr14:65754078-65754098 ( 8) ACCAGCTG 1 chr15:31558775-31558795 ( 2) TGCAGCTG 1 chr19:46385420-46385440 ( 3) ACCAGCTG 1 chr11:126059200-12605922 ( 2) TGCAGCTG 1 chr1:206603850-206603870 ( 1) TACAGCTG 1 chr17:62962135-62962155 ( 7) CGCAGCTG 1 chr1:108320150-108320170 ( 5) TACAGCTG 1 chr18:48680445-48680465 ( 6) CGCAGCTG 1 chr1:75197917-75197937 ( 12) TACAGCTG 1 chr4:850307-850327 ( 13) CACAGCTG 1 chr17:3462022-3462042 ( 12) CACAGCTG 1 chr11:191658-191678 ( 13) CACAGCTG 1 chr10:88428745-88428765 ( 4) AGCAGGTG 1 chr1:224971137-224971157 ( 12) AGCAGGTG 1 chr16:89034685-89034705 ( 6) AGCACCTG 1 chr9:101998340-101998360 ( 5) AGCACCTG 1 chr1:41819583-41819603 ( 2) GGCAGCTG 1 chr4:185275168-185275188 ( 13) CCCAGCTG 1 chr1:192508204-192508224 ( 10) CCCAGCTG 1 chrX:31247234-31247254 ( 6) AGCAGGTG 1 chr19:511452-511472 ( 7) AGCAGGTG 1 chr15:66446491-66446511 ( 8) AGCAGGTG 1 chr3:53137073-53137093 ( 13) AGCAGGTG 1 chr10:104421158-10442117 ( 6) CCCAGCTG 1 chr21:45199791-45199811 ( 13) CCCAGCTG 1 chr17:25544858-25544878 ( 2) AACAGGTG 1 chr3:13373876-13373896 ( 4) AACACCTG 1 chr10:58394040-58394060 ( 1) AACAGGTG 1 chr2:202870122-202870142 ( 9) AACAGGTG 1 chr2:216880938-216880958 ( 5) TGCACCTG 1 chr7:49925361-49925381 ( 6) TGCAGGTG 1 chr15:40347048-40347068 ( 2) TGCACCTG 1 chr16:25050001-25050021 ( 3) TGCACCTG 1 chr4:184644463-184644483 ( 8) TGCACCTG 1 chr12:104808629-10480864 ( 11) ACCAGGTG 1 chr1:25799221-25799241 ( 4) TACAGGTG 1 chr8:56903722-56903742 ( 6) TCCACCTG 1 chr22:19607040-19607060 ( 9) TCCACCTG 1 chr17:40485242-40485262 ( 11) CACACCTG 1 chr17:70600892-70600912 ( 8) GGCAGGTG 1 chr1:11028746-11028766 ( 8) CCCACCTG 1 chr1:57603811-57603831 ( 5) GACACCTG 1 chr21:43889544-43889564 ( 7) GCCACCTG 1 chrX:46513536-46513556 ( 9) GCCAGGTG 1 chr18:20808344-20808364 ( 7) GCCACCTG 1 chr1:36201538-36201558 ( 2) GCCAGGTG 1 chr16:12637333-12637353 ( 11) GCCACCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NVCAGCTG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.6591 E= 1.9e-030 51 -20 -63 15 32 25 62 -1223 -1223 192 -1223 -1223 209 -1223 -1223 -1223 -1223 25 141 -1223 -1223 138 28 -1223 -1223 -1223 -1223 203 -1223 -1223 195 -1223 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NVCAGCTG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 48 E= 1.9e-030 0.333333 0.229167 0.166667 0.270833 0.291667 0.312500 0.395833 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.312500 0.687500 0.000000 0.000000 0.687500 0.312500 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NVCAGCTG MEME-1 regular expression -------------------------------------------------------------------------------- [ATC][GCA]CA[GC][CG]TG -------------------------------------------------------------------------------- Time 5.00 secs. ******************************************************************************** ******************************************************************************** MOTIF TGACATCA MEME-2 width = 8 sites = 5 llr = 53 E-value = 2.0e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGACATCA MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::8:a::a pos.-specific C :::a::a: probability G :a:::::: matrix T a:2::a:: bits 2.1 * ** * 1.9 ** ***** 1.7 ** ***** 1.5 ** ***** Relative 1.3 ******** Entropy 1.0 ******** (15.4 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGACATCA consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACATCA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr10:51827631-51827651 13 1.36e-05 TTCTGTCACG TGACATCA chr9:129159464-129159484 1 1.36e-05 . TGACATCA TGTGGTCTAG chr20:19051513-19051533 10 1.36e-05 TATTTGATT TGACATCA TCT chr10:46222631-46222651 13 1.36e-05 TTCTGTCACG TGACATCA chr2:8393690-8393710 10 2.78e-05 agagaaatg tgtcatca tgc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACATCA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:51827631-51827651 1.4e-05 12_[+2] chr9:129159464-129159484 1.4e-05 [+2]_12 chr20:19051513-19051533 1.4e-05 9_[+2]_3 chr10:46222631-46222651 1.4e-05 12_[+2] chr2:8393690-8393710 2.8e-05 9_[+2]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACATCA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGACATCA width=8 seqs=5 chr10:51827631-51827651 ( 13) TGACATCA 1 chr9:129159464-129159484 ( 1) TGACATCA 1 chr20:19051513-19051533 ( 10) TGACATCA 1 chr10:46222631-46222651 ( 13) TGACATCA 1 chr2:8393690-8393710 ( 10) TGTCATCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACATCA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.59397 E= 2.0e+002 -897 -897 -897 203 -897 -897 195 -897 177 -897 -897 -29 -897 192 -897 -897 209 -897 -897 -897 -897 -897 -897 203 -897 192 -897 -897 209 -897 -897 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACATCA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 2.0e+002 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.800000 0.000000 0.000000 0.200000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACATCA MEME-2 regular expression -------------------------------------------------------------------------------- TG[AT]CATCA -------------------------------------------------------------------------------- Time 8.29 secs. ******************************************************************************** ******************************************************************************** MOTIF TTCTGTCA MEME-3 width = 8 sites = 6 llr = 61 E-value = 4.6e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTCTGTCA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::a pos.-specific C ::a:::8: probability G :2::a:2: matrix T a8:a:a:: bits 2.1 * * * * 1.9 * **** * 1.7 * **** * 1.5 ****** * Relative 1.3 ******** Entropy 1.0 ******** (14.7 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTCTGTCA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCTGTCA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr10:51827631-51827651 3 1.48e-05 GG TTCTGTCA CGTGACATCA chr14:67117500-67117520 13 1.48e-05 actggtcatt ttctgtca chr10:46222631-46222651 3 1.48e-05 GG TTCTGTCA CGTGACATCA chr1:31950006-31950026 2 1.48e-05 g ttctgtca gctgtggata chr22:30704690-30704710 5 2.93e-05 CTTC TTCTGTGA CTCCTACC chr15:89200108-89200128 10 4.50e-05 TGAACACGG TGCTGTCA CAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCTGTCA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:51827631-51827651 1.5e-05 2_[+3]_10 chr14:67117500-67117520 1.5e-05 12_[+3] chr10:46222631-46222651 1.5e-05 2_[+3]_10 chr1:31950006-31950026 1.5e-05 1_[+3]_11 chr22:30704690-30704710 2.9e-05 4_[+3]_8 chr15:89200108-89200128 4.5e-05 9_[+3]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCTGTCA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTCTGTCA width=8 seqs=6 chr10:51827631-51827651 ( 3) TTCTGTCA 1 chr14:67117500-67117520 ( 13) TTCTGTCA 1 chr10:46222631-46222651 ( 3) TTCTGTCA 1 chr1:31950006-31950026 ( 2) TTCTGTCA 1 chr22:30704690-30704710 ( 5) TTCTGTGA 1 chr15:89200108-89200128 ( 10) TGCTGTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCTGTCA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.52677 E= 4.6e+002 -923 -923 -923 203 -923 -923 -63 177 -923 192 -923 -923 -923 -923 -923 203 -923 -923 195 -923 -923 -923 -923 203 -923 166 -63 -923 209 -923 -923 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCTGTCA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 4.6e+002 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.166667 0.833333 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.833333 0.166667 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCTGTCA MEME-3 regular expression -------------------------------------------------------------------------------- TTCTGTCA -------------------------------------------------------------------------------- Time 10.55 secs. ******************************************************************************** ******************************************************************************** MOTIF MAATKAGA MEME-4 width = 8 sites = 9 llr = 80 E-value = 7.5e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif MAATKAGA MEME-4 Description -------------------------------------------------------------------------------- Simplified A 6aa2:a:a pos.-specific C 3::::::: probability G 1::16:a: matrix T :::74::: bits 2.1 ** * * 1.9 ** *** 1.7 ** *** 1.5 ** *** Relative 1.3 ** *** Entropy 1.0 ** **** (12.8 bits) 0.8 ******* 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAATGAGA consensus C AT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAATKAGA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:111832898-111832918 3 2.22e-05 GC AAATTAGA AGTAGTTGTG chr22:22522366-22522386 13 2.22e-05 TCAAGTGGTG AAATTAGA chr19:4968850-4968870 7 3.50e-05 CCCCTC CAATGAGA ACAGAG chr11:191658-191678 2 3.50e-05 a caatgaga tagcacagct chr7:100184175-100184195 6 4.71e-05 AAGGC CAATTAGA GCCTCCG chr1:144966110-144966130 10 5.80e-05 GTAACAAAC AAAAGAGA ACC chr15:96407887-96407907 1 6.84e-05 . AAAATAGA CTAAGAGggc chr6:26361038-26361058 9 9.32e-05 atgtttag gaatgaga tacg chr21:43881133-43881153 12 1.29e-04 TGCCCAGGGA AAAGGAGA A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAATKAGA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:111832898-111832918 2.2e-05 2_[+4]_10 chr22:22522366-22522386 2.2e-05 12_[+4] chr19:4968850-4968870 3.5e-05 6_[+4]_6 chr11:191658-191678 3.5e-05 1_[+4]_11 chr7:100184175-100184195 4.7e-05 5_[+4]_7 chr1:144966110-144966130 5.8e-05 9_[+4]_3 chr15:96407887-96407907 6.8e-05 [+4]_12 chr6:26361038-26361058 9.3e-05 8_[+4]_4 chr21:43881133-43881153 0.00013 11_[+4]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAATKAGA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MAATKAGA width=8 seqs=9 chr3:111832898-111832918 ( 3) AAATTAGA 1 chr22:22522366-22522386 ( 13) AAATTAGA 1 chr19:4968850-4968870 ( 7) CAATGAGA 1 chr11:191658-191678 ( 2) CAATGAGA 1 chr7:100184175-100184195 ( 6) CAATTAGA 1 chr1:144966110-144966130 ( 10) AAAAGAGA 1 chr15:96407887-96407907 ( 1) AAAATAGA 1 chr6:26361038-26361058 ( 9) GAATGAGA 1 chr21:43881133-43881153 ( 12) AAAGGAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAATKAGA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.89918 E= 7.5e+002 124 34 -121 -982 209 -982 -982 -982 209 -982 -982 -982 -8 -982 -121 145 -982 -982 110 86 209 -982 -982 -982 -982 -982 195 -982 209 -982 -982 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAATKAGA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 7.5e+002 0.555556 0.333333 0.111111 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.222222 0.000000 0.111111 0.666667 0.000000 0.000000 0.555556 0.444444 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAATKAGA MEME-4 regular expression -------------------------------------------------------------------------------- [AC]AA[TA][GT]AGA -------------------------------------------------------------------------------- Time 11.32 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTGAMAG MEME-5 width = 8 sites = 7 llr = 67 E-value = 1.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTGAMAG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :3::a4a: pos.-specific C :::1:6:: probability G :::9:::a matrix T a7a::::: bits 2.1 * * * * 1.9 * * * ** 1.7 * * * ** 1.5 * * * ** Relative 1.3 ***** ** Entropy 1.0 ******** (13.8 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTGACAG consensus A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGAMAG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr4:121670812-121670832 8 1.39e-05 actctgc tttgacag gaggc chr5:131541594-131541614 6 2.63e-05 GCTAT TTTGAAAG CAGGCCA chr8:61705526-61705546 5 2.63e-05 AATG TTTGAAAG CTGATTGA chrX:22081574-22081594 11 2.63e-05 GAAGTTGGGG TTTGAAAG CT chr5:107148436-107148456 2 3.97e-05 A TATGACAG TCTTATAAAT chr22:35696177-35696197 5 3.97e-05 TGTA TATGACAG CCAGTAGG chr1:82064450-82064470 2 6.57e-05 G TTTCACAG TCGTGAAATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGAMAG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:121670812-121670832 1.4e-05 7_[+5]_5 chr5:131541594-131541614 2.6e-05 5_[+5]_7 chr8:61705526-61705546 2.6e-05 4_[+5]_8 chrX:22081574-22081594 2.6e-05 10_[+5]_2 chr5:107148436-107148456 4e-05 1_[+5]_11 chr22:35696177-35696197 4e-05 4_[+5]_8 chr1:82064450-82064470 6.6e-05 1_[+5]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGAMAG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTGAMAG width=8 seqs=7 chr4:121670812-121670832 ( 8) TTTGACAG 1 chr5:131541594-131541614 ( 6) TTTGAAAG 1 chr8:61705526-61705546 ( 5) TTTGAAAG 1 chrX:22081574-22081594 ( 11) TTTGAAAG 1 chr5:107148436-107148456 ( 2) TATGACAG 1 chr22:35696177-35696197 ( 5) TATGACAG 1 chr1:82064450-82064470 ( 2) TTTCACAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGAMAG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.46255 E= 1.3e+003 -945 -945 -945 203 29 -945 -945 155 -945 -945 -945 203 -945 -88 173 -945 209 -945 -945 -945 87 112 -945 -945 209 -945 -945 -945 -945 -945 195 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGAMAG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.3e+003 0.000000 0.000000 0.000000 1.000000 0.285714 0.000000 0.000000 0.714286 0.000000 0.000000 0.000000 1.000000 0.000000 0.142857 0.857143 0.000000 1.000000 0.000000 0.000000 0.000000 0.428571 0.571429 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGAMAG MEME-5 regular expression -------------------------------------------------------------------------------- T[TA]TGA[CA]AG -------------------------------------------------------------------------------- Time 12.00 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:75197917-75197937 6.62e-02 11_[+1(9.58e-05)]_1 chr21:45199791-45199811 1.14e-01 20 chr19:1123195-1123215 8.62e-01 20 chr6:4880101-4880121 5.49e-01 20 chr1:12100620-12100640 7.80e-02 20 chr12:104808629-10480864 1.45e-01 20 chr4:184644463-184644483 1.43e-01 20 chr6:18586605-18586625 3.71e-01 20 chr19:39988649-39988669 1.84e-01 20 chrX:15483634-15483654 1.84e-01 20 chr11:126059200-12605922 1.32e-01 1_[+1(6.30e-05)]_11 chr7:530340-530360 8.75e-01 20 chr14:106048448-10604846 5.68e-02 20 chr18:66660166-66660186 2.25e-01 20 chr14:102345197-10234521 8.10e-01 20 chr2:17699750-17699770 4.09e-01 20 chr4:74469316-74469336 4.32e-01 20 chr16:12637333-12637353 1.92e-01 20 chr1:144966110-144966130 3.64e-02 9_[+4(5.80e-05)]_3 chr16:25050001-25050021 1.71e-02 20 chr1:154810326-154810346 7.09e-01 20 chr19:3125287-3125307 1.05e-01 20 chr21:43881133-43881153 1.01e-01 20 chr11:126944139-12694415 9.25e-01 20 chr1:25799221-25799241 1.10e-01 20 chr2:46079802-46079822 2.90e-01 20 chr11:126058677-12605869 3.93e-01 20 chr1:203290275-203290295 7.60e-01 20 chr17:80309321-80309341 8.88e-01 20 chr2:8393690-8393710 5.33e-04 9_[+2(2.78e-05)]_3 chr15:96407887-96407907 9.06e-02 [+4(6.84e-05)]_12 chr7:102082220-102082240 3.30e-01 20 chr6:109226078-109226098 1.06e-01 20 chr11:26673652-26673672 7.94e-01 20 chr18:23747741-23747761 6.87e-01 20 chr7:137670509-137670529 2.29e-01 20 chr4:8393866-8393886 9.72e-04 12_[+1(3.03e-05)] chr4:84142961-84142981 1.17e-01 20 chr2:202870122-202870142 3.75e-03 20 chr14:67116467-67116487 2.60e-01 20 chr8:11315498-11315518 4.84e-01 20 chr15:68076961-68076981 3.65e-01 20 chr14:96661122-96661142 6.84e-01 20 chr7:34772714-34772734 2.62e-02 20 chr1:160721449-160721469 2.89e-01 20 chr3:129894239-129894259 2.85e-01 20 chr13:46951869-46951889 1.87e-01 20 chr10:104421158-10442117 3.79e-02 20 chr18:48680445-48680465 3.11e-02 5_[+1(9.58e-05)]_7 chr17:40485242-40485262 2.31e-01 20 chr1:39738119-39738139 1.50e-01 20 chr3:53137073-53137093 3.52e-05 6_[+5(6.57e-05)]_6 chr11:98969636-98969656 1.61e-01 20 chr2:197139430-197139450 5.60e-01 20 chr4:71544268-71544288 1.59e-01 20 chr1:113574071-113574091 1.86e-02 20 chr19:46385420-46385440 3.24e-03 2_[+1(6.30e-05)]_10 chr22:22522366-22522386 3.54e-04 12_[+4(2.22e-05)] chr1:57603811-57603831 6.01e-03 20 chr7:154629525-154629545 5.64e-01 20 chr2:127736090-127736110 2.20e-01 20 chr17:66255347-66255367 4.80e-01 20 chr9:80531569-80531589 8.19e-01 20 chr11:191658-191678 2.12e-05 1_[+4(3.50e-05)]_11 chr12:79462962-79462982 5.38e-01 20 chr3:178232059-178232079 1.25e-02 20 chr15:75301520-75301540 5.04e-01 20 chr19:4328541-4328561 9.56e-01 20 chr17:27065868-27065888 9.47e-01 20 chr22:19607040-19607060 1.79e-01 20 chr7:37955315-37955335 5.17e-02 20 chr6:43682839-43682859 6.84e-01 20 chr16:5206669-5206689 4.75e-02 20 chr10:58394040-58394060 4.45e-02 20 chr1:108320150-108320170 2.81e-04 4_[+1(9.58e-05)]_8 chr9:71581770-71581790 8.30e-01 20 chr2:112463535-112463555 5.00e-01 20 chr1:11028746-11028766 3.23e-01 20 chr22:25882279-25882299 2.67e-01 20 chr3:56951906-56951926 7.88e-01 20 chr10:22989606-22989626 3.19e-01 20 chr20:3780614-3780634 7.83e-01 20 chr3:13373876-13373896 1.76e-02 20 chr21:45563372-45563392 9.13e-01 20 chr15:40347048-40347068 7.87e-02 20 chr1:36201538-36201558 2.13e-02 20 chr11:115810593-11581061 2.50e-01 20 chr5:118058884-118058904 1.86e-03 20 chr3:13064912-13064932 9.49e-01 20 chr8:41480592-41480612 2.49e-01 20 chr1:31950006-31950026 4.93e-05 1_[+3(1.48e-05)]_11 chr1:231347327-231347347 9.67e-01 20 chr22:46983719-46983739 3.88e-01 20 chr12:8771909-8771929 8.01e-01 20 chr15:66446491-66446511 4.65e-03 20 chr4:84133810-84133830 8.88e-01 20 chr7:2208080-2208100 8.44e-01 20 chr4:121670812-121670832 1.90e-05 7_[+5(1.39e-05)]_5 chr10:46222631-46222651 4.30e-06 2_[+3(1.48e-05)]_2_[+2(1.36e-05)] chr1:233811882-233811902 9.35e-01 20 chr14:102343043-10234306 4.56e-01 20 chr15:44068500-44068520 2.88e-01 20 chr1:210567205-210567225 8.59e-01 20 chr22:30704690-30704710 1.50e-02 4_[+3(2.93e-05)]_8 chr17:1496315-1496335 6.90e-01 20 chr8:23078687-23078707 6.38e-03 20 chr3:58188750-58188770 8.90e-01 20 chr3:194929113-194929133 7.32e-01 20 chr17:62962135-62962155 3.46e-03 6_[+1(9.58e-05)]_6 chr5:129659965-129659985 8.16e-02 20 chr20:42310858-42310878 7.84e-01 20 chrX:48796183-48796203 6.51e-01 20 chr1:183881532-183881552 2.29e-01 20 chr1:76192726-76192746 5.53e-01 20 chr7:75292471-75292491 5.65e-01 20 chr7:2934406-2934426 8.25e-01 20 chr4:175849504-175849524 5.18e-03 20 chr17:56017282-56017302 9.69e-01 20 chr15:60832652-60832672 9.52e-01 20 chr20:19051513-19051533 1.61e-04 9_[+2(1.36e-05)]_3 chr7:49925361-49925381 1.08e-01 20 chr18:20808344-20808364 3.79e-03 20 chr5:114545191-114545211 6.46e-01 20 chr7:136044305-136044325 7.97e-01 20 chr22:29188300-29188320 4.29e-02 20 chr1:82064450-82064470 1.62e-02 1_[+5(6.57e-05)]_11 chr16:89045273-89045293 9.25e-01 20 chr19:46386197-46386217 3.40e-01 20 chr19:7894887-7894907 7.34e-01 20 chr11:41330977-41330997 1.87e-01 20 chr6:138777330-138777350 6.05e-01 20 chr19:14228685-14228705 9.53e-01 20 chr1:66868086-66868106 1.46e-01 20 chr11:102292155-10229217 1.80e-01 20 chr15:89200108-89200128 4.35e-03 9_[+3(4.50e-05)]_3 chr12:76353999-76354019 7.68e-02 20 chr11:18791590-18791610 2.68e-01 20 chr10:103663811-10366383 3.76e-01 20 chr12:46502721-46502741 1.64e-01 20 chr19:511452-511472 3.47e-02 20 chr17:3462022-3462042 8.37e-03 20 chr8:145159274-145159294 2.93e-01 20 chr16:56944847-56944867 1.21e-01 20 chrX:22081574-22081594 1.34e-02 10_[+5(2.63e-05)]_2 chr19:6372663-6372683 1.43e-01 20 chr15:89631522-89631542 8.06e-01 20 chr1:221330918-221330938 7.60e-02 20 chr6:26361038-26361058 1.56e-02 8_[+4(9.32e-05)]_4 chr1:175276492-175276512 2.93e-01 20 chr5:6728275-6728295 3.44e-01 20 chr5:142554742-142554762 4.25e-01 20 chrX:31247234-31247254 1.30e-03 20 chr13:20532757-20532777 7.27e-01 20 chr13:52531797-52531817 2.63e-01 20 chr22:24186777-24186797 4.46e-01 20 chr12:113436987-11343700 2.83e-01 20 chr14:67117500-67117520 1.14e-02 12_[+3(1.48e-05)] chr1:192508204-192508224 1.63e-01 20 chr2:136964413-136964433 3.78e-01 20 chr20:46968093-46968113 2.65e-01 20 chr17:70585266-70585286 8.75e-01 20 chr16:87843263-87843283 7.05e-01 20 chr4:185275168-185275188 2.80e-02 20 chr11:59041023-59041043 2.42e-01 20 chr14:106167393-10616741 2.58e-01 20 chr19:4472128-4472148 5.39e-01 20 chr19:19496457-19496477 5.23e-01 20 chr8:61705526-61705546 9.69e-04 4_[+5(2.63e-05)]_8 chr4:52709177-52709197 1.07e-01 20 chr6:32146078-32146098 8.80e-01 20 chr1:41819583-41819603 4.25e-03 20 chr6:135424241-135424261 5.99e-02 20 chr9:129159464-129159484 8.15e-03 [+2(1.36e-05)]_12 chr1:143913422-143913442 4.78e-01 20 chr15:31558775-31558795 5.79e-02 1_[+1(6.30e-05)]_11 chr4:48782501-48782521 6.22e-01 20 chrX:49047678-49047698 9.46e-01 20 chr4:850307-850327 3.18e-02 20 chr17:68984304-68984324 2.23e-01 20 chr11:71129951-71129971 5.67e-01 20 chr17:74667908-74667928 6.63e-01 20 chr5:6652287-6652307 3.65e-01 20 chr2:185309122-185309142 2.68e-01 20 chr9:101998340-101998360 3.99e-03 20 chr22:23274225-23274245 1.22e-01 20 chr3:128995443-128995463 3.76e-01 20 chr14:65754078-65754098 8.18e-02 7_[+1(6.30e-05)]_5 chr12:123911743-12391176 6.30e-03 20 chr5:16067706-16067726 8.63e-01 20 chr16:1728151-1728171 9.65e-01 20 chr1:206603850-206603870 5.31e-03 [+1(9.58e-05)]_12 chr2:216880938-216880958 4.10e-02 20 chr12:48277162-48277182 2.22e-01 20 chr7:100184175-100184195 5.43e-02 5_[+4(4.71e-05)]_7 chr18:71959311-71959331 8.07e-01 20 chr2:17995116-17995136 6.02e-01 20 chr12:92865564-92865584 5.73e-01 20 chr17:40730798-40730818 1.28e-01 20 chr22:35696177-35696197 5.49e-04 4_[+5(3.97e-05)]_8 chr13:41092818-41092838 1.52e-01 20 chr3:90089817-90089837 2.20e-02 20 chr5:55210059-55210079 7.70e-02 20 chr10:51827631-51827651 4.30e-06 2_[+3(1.48e-05)]_2_[+2(1.36e-05)] chr9:29796484-29796504 2.13e-02 20 chr6:56631796-56631816 3.61e-01 20 chr4:148716133-148716153 4.43e-01 20 chr21:34681364-34681384 3.90e-01 20 chr16:89034685-89034705 3.67e-02 20 chr1:224971137-224971157 3.33e-02 20 chr5:131541594-131541614 3.81e-04 5_[+5(2.63e-05)]_7 chr19:3133496-3133516 8.78e-01 20 chr1:82618475-82618495 1.62e-01 20 chr7:92442841-92442861 6.59e-01 20 chr10:2743018-2743038 3.53e-01 20 chr7:99819009-99819029 7.46e-01 20 chr10:5932073-5932093 9.51e-01 20 chr17:47866537-47866557 9.12e-01 20 chr10:98047686-98047706 7.12e-01 20 chrX:46988675-46988695 4.40e-01 20 chr2:67691143-67691163 1.91e-01 20 chr1:6845300-6845320 9.75e-01 20 chrX:46513536-46513556 5.86e-02 20 chr20:45035326-45035346 4.79e-01 20 chr19:45394349-45394369 2.13e-01 20 chr12:12868465-12868485 6.39e-02 20 chr16:21371692-21371712 8.28e-01 20 chr4:171341574-171341594 7.41e-01 20 chr1:167597468-167597488 7.44e-02 20 chr3:111832898-111832918 1.08e-02 2_[+4(2.22e-05)]_10 chr22:48441396-48441416 6.39e-01 20 chr10:88428745-88428765 1.95e-01 20 chr17:25544858-25544878 1.00e-01 20 chr11:118566652-11856667 6.17e-01 20 chr21:43889544-43889564 3.44e-03 20 chr19:11457085-11457105 4.33e-01 20 chr17:16884789-16884809 1.31e-01 20 chr5:107148436-107148456 3.52e-03 1_[+5(3.97e-05)]_11 chr17:70600892-70600912 2.85e-02 20 chr19:4968850-4968870 3.03e-03 6_[+4(3.50e-05)]_6 chr19:18303790-18303810 7.94e-01 20 chr16:2518981-2519001 6.77e-01 20 chr17:26368608-26368628 8.34e-01 20 chr8:56903722-56903742 7.97e-02 20 chr7:916008-916028 5.70e-01 20 chr5:150594333-150594353 2.45e-01 20 chr6:130838714-130838734 1.02e-01 20 chr2:191448018-191448038 2.85e-02 20 chr7:10980263-10980283 2.08e-01 20 chr6:88845662-88845682 2.03e-01 20 chr10:102821149-10282116 4.13e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n09.farnam.hpc.yale.internal ********************************************************************************