******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/TBL1XR1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr7:155137377-155137397 1.0000 20 chr17:1084625-1084645 1.0000 20 chr2:113394311-113394331 1.0000 20 chr8:61824926-61824946 1.0000 20 chr1:221930725-221930745 1.0000 20 chr10:3977587-3977607 1.0000 20 chr15:101675971-10167599 1.0000 20 chr10:86077053-86077073 1.0000 20 chr19:39894631-39894651 1.0000 20 chr14:35885457-35885477 1.0000 20 chr1:158132948-158132968 1.0000 20 chrX:13099943-13099963 1.0000 20 chr3:156382811-156382831 1.0000 20 chr3:45699602-45699622 1.0000 20 chr1:42193205-42193225 1.0000 20 chr2:146351022-146351042 1.0000 20 chr9:102130753-102130773 1.0000 20 chr16:21658681-21658701 1.0000 20 chr10:64467781-64467801 1.0000 20 chr11:128341301-12834132 1.0000 20 chr20:56056036-56056056 1.0000 20 chr21:16250247-16250267 1.0000 20 chr6:138230076-138230096 1.0000 20 chr5:55982467-55982487 1.0000 20 chr10:65046543-65046563 1.0000 20 chr2:202278996-202279016 1.0000 20 chr9:33164230-33164250 1.0000 20 chr17:38231907-38231927 1.0000 20 chr9:93970515-93970535 1.0000 20 chr2:48060786-48060806 1.0000 20 chr19:36394878-36394898 1.0000 20 chr20:10651418-10651438 1.0000 20 chr6:157978751-157978771 1.0000 20 chr1:108477382-108477402 1.0000 20 chr6:164127166-164127186 1.0000 20 chr18:77196072-77196092 1.0000 20 chr19:1664000-1664020 1.0000 20 chr11:64053225-64053245 1.0000 20 chr3:45919798-45919818 1.0000 20 chrX:41096078-41096098 1.0000 20 chr3:186733897-186733917 1.0000 20 chr16:78795467-78795487 1.0000 20 chr13:49554309-49554329 1.0000 20 chr8:142012424-142012444 1.0000 20 chr16:89034606-89034626 1.0000 20 chr16:17228654-17228674 1.0000 20 chr14:93049541-93049561 1.0000 20 chr22:42258335-42258355 1.0000 20 chr4:185455902-185455922 1.0000 20 chr5:102596780-102596800 1.0000 20 chr2:7085444-7085464 1.0000 20 chr1:110359202-110359222 1.0000 20 chr4:171619647-171619667 1.0000 20 chr1:154833019-154833039 1.0000 20 chr2:38161834-38161854 1.0000 20 chr16:48570412-48570432 1.0000 20 chr5:123986050-123986070 1.0000 20 chrX:13275551-13275571 1.0000 20 chr12:70637190-70637210 1.0000 20 chr11:1876448-1876468 1.0000 20 chr6:14110389-14110409 1.0000 20 chr20:45181793-45181813 1.0000 20 chr22:35704859-35704879 1.0000 20 chr10:64392394-64392414 1.0000 20 chr19:18059022-18059042 1.0000 20 chr2:37617725-37617745 1.0000 20 chr9:127632671-127632691 1.0000 20 chr17:60802332-60802352 1.0000 20 chr2:47144968-47144988 1.0000 20 chr14:102783373-10278339 1.0000 20 chr5:107857222-107857242 1.0000 20 chr17:37912430-37912450 1.0000 20 chr19:36390782-36390802 1.0000 20 chr8:19554032-19554052 1.0000 20 chr8:142192596-142192616 1.0000 20 chr7:35768968-35768988 1.0000 20 chr11:75535503-75535523 1.0000 20 chr22:23227371-23227391 1.0000 20 chr15:59529496-59529516 1.0000 20 chr3:105585642-105585662 1.0000 20 chr11:128702154-12870217 1.0000 20 chr16:11763665-11763685 1.0000 20 chr5:56471578-56471598 1.0000 20 chr3:45902806-45902826 1.0000 20 chr14:105393048-10539306 1.0000 20 chr17:38738853-38738873 1.0000 20 chr5:176881699-176881719 1.0000 20 chr17:37914471-37914491 1.0000 20 chr7:107279168-107279188 1.0000 20 chr1:178629047-178629067 1.0000 20 chr5:113696866-113696886 1.0000 20 chr1:27113955-27113975 1.0000 20 chr5:175875192-175875212 1.0000 20 chr6:138261507-138261527 1.0000 20 chr9:102821130-102821150 1.0000 20 chr2:8562019-8562039 1.0000 20 chr8:132828236-132828256 1.0000 20 chr17:5146463-5146483 1.0000 20 chrX:41593404-41593424 1.0000 20 chr17:1087050-1087070 1.0000 20 chr19:6518276-6518296 1.0000 20 chr11:65905305-65905325 1.0000 20 chr4:86582068-86582088 1.0000 20 chr17:75877773-75877793 1.0000 20 chr5:1313246-1313266 1.0000 20 chr19:13319133-13319153 1.0000 20 chr6:181472-181492 1.0000 20 chr6:145671321-145671341 1.0000 20 chr11:76338136-76338156 1.0000 20 chr5:118676399-118676419 1.0000 20 chr21:43948113-43948133 1.0000 20 chrX:9431188-9431208 1.0000 20 chr7:101577104-101577124 1.0000 20 chr15:31296724-31296744 1.0000 20 chr3:69376171-69376191 1.0000 20 chr3:47517481-47517501 1.0000 20 chr1:230259160-230259180 1.0000 20 chr7:43528603-43528623 1.0000 20 chr20:37471338-37471358 1.0000 20 chr6:138188313-138188333 1.0000 20 chr1:150536053-150536073 1.0000 20 chr2:71292122-71292142 1.0000 20 chr1:205255869-205255889 1.0000 20 chr9:126899916-126899936 1.0000 20 chr16:75032752-75032772 1.0000 20 chr11:41330940-41330960 1.0000 20 chr6:157089241-157089261 1.0000 20 chr10:76555796-76555816 1.0000 20 chr8:81050948-81050968 1.0000 20 chr9:137283325-137283345 1.0000 20 chr1:203296422-203296442 1.0000 20 chr8:27936481-27936501 1.0000 20 chr9:114792506-114792526 1.0000 20 chr1:157566336-157566356 1.0000 20 chr17:73029964-73029984 1.0000 20 chr8:33412474-33412494 1.0000 20 chr7:101934995-101935015 1.0000 20 chr3:39189724-39189744 1.0000 20 chr6:31528186-31528206 1.0000 20 chr3:182762498-182762518 1.0000 20 chr10:115441782-11544180 1.0000 20 chr1:172715599-172715619 1.0000 20 chr12:127526786-12752680 1.0000 20 chr2:88906363-88906383 1.0000 20 chr2:219433495-219433515 1.0000 20 chr6:18263441-18263461 1.0000 20 chr12:80693189-80693209 1.0000 20 chr11:7533905-7533925 1.0000 20 chr10:22895318-22895338 1.0000 20 chr5:158854746-158854766 1.0000 20 chr7:45018776-45018796 1.0000 20 chr4:2698270-2698290 1.0000 20 chr1:221950264-221950284 1.0000 20 chr7:7855887-7855907 1.0000 20 chr3:23632597-23632617 1.0000 20 chr3:141098592-141098612 1.0000 20 chr11:10463739-10463759 1.0000 20 chr20:57483090-57483110 1.0000 20 chr1:27959451-27959471 1.0000 20 chr1:184915368-184915388 1.0000 20 chr20:62339278-62339298 1.0000 20 chr1:154836354-154836374 1.0000 20 chr18:13612430-13612450 1.0000 20 chr12:48206928-48206948 1.0000 20 chr16:12058898-12058918 1.0000 20 chr7:134680291-134680311 1.0000 20 chr16:85936470-85936490 1.0000 20 chr17:5322370-5322390 1.0000 20 chr3:23695151-23695171 1.0000 20 chr16:75413446-75413466 1.0000 20 chr4:26133498-26133518 1.0000 20 chr22:50329918-50329938 1.0000 20 chr8:38662978-38662998 1.0000 20 chr16:68390494-68390514 1.0000 20 chr2:37232531-37232551 1.0000 20 chr8:102924050-102924070 1.0000 20 chr11:9636821-9636841 1.0000 20 chr19:12899650-12899670 1.0000 20 chr19:16482595-16482615 1.0000 20 chr8:141599038-141599058 1.0000 20 chr9:135257641-135257661 1.0000 20 chr16:75353858-75353878 1.0000 20 chr3:105086890-105086910 1.0000 20 chr6:12011408-12011428 1.0000 20 chr1:159893572-159893592 1.0000 20 chr1:235098527-235098547 1.0000 20 chr3:119042075-119042095 1.0000 20 chr8:142046319-142046339 1.0000 20 chr19:50922965-50922985 1.0000 20 chr11:102431626-10243164 1.0000 20 chr3:193849137-193849157 1.0000 20 chr7:5739863-5739883 1.0000 20 chr5:133377758-133377778 1.0000 20 chr3:15313466-15313486 1.0000 20 chr10:112288885-11228890 1.0000 20 chr9:132751491-132751511 1.0000 20 chr19:7808596-7808616 1.0000 20 chr4:123463739-123463759 1.0000 20 chr1:61798074-61798094 1.0000 20 chr21:33508447-33508467 1.0000 20 chr7:101500149-101500169 1.0000 20 chr11:121338846-12133886 1.0000 20 chr12:113508174-11350819 1.0000 20 chr2:25643837-25643857 1.0000 20 chr22:40353081-40353101 1.0000 20 chr5:118367205-118367225 1.0000 20 chr8:142123619-142123639 1.0000 20 chr9:140600124-140600144 1.0000 20 chr22:42000144-42000164 1.0000 20 chr6:36326475-36326495 1.0000 20 chr10:135088586-13508860 1.0000 20 chr1:111506837-111506857 1.0000 20 chr22:22222407-22222427 1.0000 20 chr10:52020680-52020700 1.0000 20 chr15:81589247-81589267 1.0000 20 chr3:194980756-194980776 1.0000 20 chr1:42217864-42217884 1.0000 20 chr11:108491785-10849180 1.0000 20 chr14:69281403-69281423 1.0000 20 chr2:111977117-111977137 1.0000 20 chr16:12060275-12060295 1.0000 20 chr17:1987158-1987178 1.0000 20 chr5:131975655-131975675 1.0000 20 chr8:11396723-11396743 1.0000 20 chr7:137666554-137666574 1.0000 20 chr1:157565295-157565315 1.0000 20 chr16:11319432-11319452 1.0000 20 chr16:22207093-22207113 1.0000 20 chr1:205718616-205718636 1.0000 20 chr3:119114990-119115010 1.0000 20 chr6:90067195-90067215 1.0000 20 chr15:39719550-39719570 1.0000 20 chr3:105556223-105556243 1.0000 20 chr3:5020430-5020450 1.0000 20 chr8:67026405-67026425 1.0000 20 chr13:109815273-10981529 1.0000 20 chr1:9686377-9686397 1.0000 20 chr11:128422925-12842294 1.0000 20 chr17:43306579-43306599 1.0000 20 chr18:74212109-74212129 1.0000 20 chr12:48201998-48202018 1.0000 20 chr1:200597554-200597574 1.0000 20 chr2:231738542-231738562 1.0000 20 chr12:25228113-25228133 1.0000 20 chr2:64319794-64319814 1.0000 20 chrX:12975221-12975241 1.0000 20 chr4:48198898-48198918 1.0000 20 chr3:177077812-177077832 1.0000 20 chr5:133436281-133436301 1.0000 20 chr12:26624694-26624714 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_TBL1XR1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/TBL1XR1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.239 C 0.255 G 0.247 T 0.26 Background letter frequencies (from file dataset with add-one prior applied): A 0.239 C 0.255 G 0.247 T 0.26 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF ACCACAAG MEME-1 width = 8 sites = 10 llr = 94 E-value = 6.6e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACCACAAG MEME-1 Description -------------------------------------------------------------------------------- Simplified A a::a:88: pos.-specific C :aa:92:: probability G ::::1::8 matrix T ::::::22 bits 2.1 **** 1.9 **** 1.7 **** 1.4 ***** Relative 1.2 ******** Entropy 1.0 ******** (13.5 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ACCACAAG consensus CTT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCACAAG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr22:40353081-40353101 12 1.34e-05 TCAAGAATTG ACCACAAG G chr7:5739863-5739883 9 1.34e-05 CAGCACAC ACCACAAG CCGC chr9:135257641-135257661 11 1.34e-05 gcaaatgaaa accacaag ga chr1:178629047-178629067 8 1.34e-05 TGGGGAA ACCACAAG ATTCG chr1:61798074-61798094 11 5.62e-05 GAGATTAGGC ACCACATG TG chr1:221950264-221950284 5 5.62e-05 tgca accaccag caaatcac chrX:9431188-9431208 11 5.62e-05 GAATCAATCA ACCACAAT GT chr8:61824926-61824946 6 5.62e-05 CTTTT ACCACAAT GCTGCAA chr8:142012424-142012444 5 6.92e-05 tgaa accagaag AACCCTCA chr8:19554032-19554052 2 1.15e-04 A ACCACCTG TGGCTGAAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCACAAG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr22:40353081-40353101 1.3e-05 11_[+1]_1 chr7:5739863-5739883 1.3e-05 8_[+1]_4 chr9:135257641-135257661 1.3e-05 10_[+1]_2 chr1:178629047-178629067 1.3e-05 7_[+1]_5 chr1:61798074-61798094 5.6e-05 10_[+1]_2 chr1:221950264-221950284 5.6e-05 4_[+1]_8 chrX:9431188-9431208 5.6e-05 10_[+1]_2 chr8:61824926-61824946 5.6e-05 5_[+1]_7 chr8:142012424-142012444 6.9e-05 4_[+1]_8 chr8:19554032-19554052 0.00011 1_[+1]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCACAAG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACCACAAG width=8 seqs=10 chr22:40353081-40353101 ( 12) ACCACAAG 1 chr7:5739863-5739883 ( 9) ACCACAAG 1 chr9:135257641-135257661 ( 11) ACCACAAG 1 chr1:178629047-178629067 ( 8) ACCACAAG 1 chr1:61798074-61798094 ( 11) ACCACATG 1 chr1:221950264-221950284 ( 5) ACCACCAG 1 chrX:9431188-9431208 ( 11) ACCACAAT 1 chr8:61824926-61824946 ( 6) ACCACAAT 1 chr8:142012424-142012444 ( 5) ACCAGAAG 1 chr8:19554032-19554052 ( 2) ACCACCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCACAAG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.2854 E= 6.6e-001 207 -997 -997 -997 -997 197 -997 -997 -997 197 -997 -997 207 -997 -997 -997 -997 182 -130 -997 174 -35 -997 -997 174 -997 -997 -38 -997 -997 169 -38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCACAAG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 6.6e-001 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.900000 0.100000 0.000000 0.800000 0.200000 0.000000 0.000000 0.800000 0.000000 0.000000 0.200000 0.000000 0.000000 0.800000 0.200000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCACAAG MEME-1 regular expression -------------------------------------------------------------------------------- ACCAC[AC][AT][GT] -------------------------------------------------------------------------------- Time 3.29 secs. ******************************************************************************** ******************************************************************************** MOTIF RRARRKGR MEME-2 width = 8 sites = 23 llr = 167 E-value = 2.7e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif RRARRKGR MEME-2 Description -------------------------------------------------------------------------------- Simplified A 44a63::7 pos.-specific C :::::::: probability G 66:474a3 matrix T :::::6:: bits 2.1 * * 1.9 * * 1.7 * * 1.4 * * Relative 1.2 * * Entropy 1.0 ******** (10.5 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGAAGTGA consensus AA GAG G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRARRKGR MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:7533905-7533925 8 1.32e-05 ATTTTAA GGAAGTGA AAGAG chr17:73029964-73029984 8 3.85e-05 TATGAGG GGAAGGGA TGGCA chr7:101934995-101935015 9 5.22e-05 GTCTCTGC GGAGGTGA GCAG chr6:14110389-14110409 6 1.03e-04 AACAT GAAGGTGA CAGCCAG chr3:194980756-194980776 1 1.80e-04 . GGAAATGA CCGCCCGCCG chr16:68390494-68390514 5 1.80e-04 GGAA GGAAGTGG GGAAGACC chr8:33412474-33412494 3 1.80e-04 GA GGAAGTGG TGGCTTCTGC chr10:86077053-86077073 12 1.80e-04 tttctgagga ggaaatga a chr9:140600124-140600144 1 2.68e-04 . GGAAGGGG AGGAGGGGTT chr5:133377758-133377778 4 2.68e-04 ACC AAAGGTGA ACTTGGAGG chr5:158854746-158854766 12 2.68e-04 AGATAGGGTG AGAGGGGA T chr10:65046543-65046563 5 2.68e-04 CTGG GAAAGTGG TAATGCTG chr2:113394311-113394331 11 2.68e-04 GTAACCACTG AAAGGTGA GG chr19:18059022-18059042 12 2.95e-04 GGTTTGCCGA GGAGGTGG C chr3:193849137-193849157 11 3.57e-04 CCTAGGGGAC AAAGGGGA GT chr19:13319133-13319153 1 3.57e-04 . AGAAATGA GAAATGGAGT chr10:135088586-13508860 2 4.10e-04 G GGAGGGGG GCATTCTCAG chr8:142123619-142123639 6 4.59e-04 CTTTA AAAAGTGG CTAAGAA chr11:121338846-12133886 3 4.59e-04 GG AGAAAGGA GCTGTGGGTT chr2:219433495-219433515 6 5.23e-04 GGCGG GAAGAGGA TGTGTGG chr16:75413446-75413466 12 5.47e-04 aaaaactccc aaaaagga a chr2:202278996-202279016 7 5.47e-04 TTTACA AAAAAGGA GAGTTA chr1:230259160-230259180 12 7.62e-04 ggactacttt gaagaggG G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRARRKGR MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:7533905-7533925 1.3e-05 7_[+2]_5 chr17:73029964-73029984 3.9e-05 7_[+2]_5 chr7:101934995-101935015 5.2e-05 8_[+2]_4 chr6:14110389-14110409 0.0001 5_[+2]_7 chr3:194980756-194980776 0.00018 [+2]_12 chr16:68390494-68390514 0.00018 4_[+2]_8 chr8:33412474-33412494 0.00018 2_[+2]_10 chr10:86077053-86077073 0.00018 11_[+2]_1 chr9:140600124-140600144 0.00027 [+2]_12 chr5:133377758-133377778 0.00027 3_[+2]_9 chr5:158854746-158854766 0.00027 11_[+2]_1 chr10:65046543-65046563 0.00027 4_[+2]_8 chr2:113394311-113394331 0.00027 10_[+2]_2 chr19:18059022-18059042 0.0003 11_[+2]_1 chr3:193849137-193849157 0.00036 10_[+2]_2 chr19:13319133-13319153 0.00036 [+2]_12 chr10:135088586-13508860 0.00041 1_[+2]_11 chr8:142123619-142123639 0.00046 5_[+2]_7 chr11:121338846-12133886 0.00046 2_[+2]_10 chr2:219433495-219433515 0.00052 5_[+2]_7 chr16:75413446-75413466 0.00055 11_[+2]_1 chr2:202278996-202279016 0.00055 6_[+2]_6 chr1:230259160-230259180 0.00076 11_[+2]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRARRKGR MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RRARRKGR width=8 seqs=23 chr11:7533905-7533925 ( 8) GGAAGTGA 1 chr17:73029964-73029984 ( 8) GGAAGGGA 1 chr7:101934995-101935015 ( 9) GGAGGTGA 1 chr6:14110389-14110409 ( 6) GAAGGTGA 1 chr3:194980756-194980776 ( 1) GGAAATGA 1 chr16:68390494-68390514 ( 5) GGAAGTGG 1 chr8:33412474-33412494 ( 3) GGAAGTGG 1 chr10:86077053-86077073 ( 12) GGAAATGA 1 chr9:140600124-140600144 ( 1) GGAAGGGG 1 chr5:133377758-133377778 ( 4) AAAGGTGA 1 chr5:158854746-158854766 ( 12) AGAGGGGA 1 chr10:65046543-65046563 ( 5) GAAAGTGG 1 chr2:113394311-113394331 ( 11) AAAGGTGA 1 chr19:18059022-18059042 ( 12) GGAGGTGG 1 chr3:193849137-193849157 ( 11) AAAGGGGA 1 chr19:13319133-13319153 ( 1) AGAAATGA 1 chr10:135088586-13508860 ( 2) GGAGGGGG 1 chr8:142123619-142123639 ( 6) AAAAGTGG 1 chr11:121338846-12133886 ( 3) AGAAAGGA 1 chr2:219433495-219433515 ( 6) GAAGAGGA 1 chr16:75413446-75413466 ( 12) AAAAAGGA 1 chr2:202278996-202279016 ( 7) AAAAAGGA 1 chr1:230259160-230259180 ( 12) GAAGAGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRARRKGR MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.0312 E= 2.7e+001 71 -1117 130 -1117 87 -1117 119 -1117 207 -1117 -1117 -1117 124 -1117 82 -1117 54 -1117 140 -1117 -1117 -1117 82 112 -1117 -1117 202 -1117 145 -1117 49 -1117 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRARRKGR MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 2.7e+001 0.391304 0.000000 0.608696 0.000000 0.434783 0.000000 0.565217 0.000000 1.000000 0.000000 0.000000 0.000000 0.565217 0.000000 0.434783 0.000000 0.347826 0.000000 0.652174 0.000000 0.000000 0.000000 0.434783 0.565217 0.000000 0.000000 1.000000 0.000000 0.652174 0.000000 0.347826 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRARRKGR MEME-2 regular expression -------------------------------------------------------------------------------- [GA][GA]A[AG][GA][TG]G[AG] -------------------------------------------------------------------------------- Time 4.56 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTKKTTT MEME-3 width = 8 sites = 23 llr = 165 E-value = 1.2e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTKKTTT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :1::1::: pos.-specific C :2::::13 probability G :7:651:: matrix T a:a44997 bits 2.1 1.9 * * 1.7 * * 1.4 * * ** Relative 1.2 * * ** Entropy 1.0 * ** *** (10.4 bits) 0.8 * ** *** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGTGGTTT consensus C TT C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTKKTTT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:119114990-119115010 4 1.79e-05 cca tgtggttt tcaaaaaga chr11:102431626-10243164 8 1.79e-05 tcatatt tgtggttt cactt chr1:172715599-172715619 2 1.79e-05 A TGTGGTTT TGCGGTTATA chr10:76555796-76555816 1 1.79e-05 . tgtggttt taatttgcat chrX:13275551-13275571 9 1.79e-05 TTCTACGG TGTGGTTT ACCA chr7:7855887-7855907 10 5.56e-05 tttgcatcg tgttgttt tcc chr15:39719550-39719570 12 1.30e-04 AACCCCTAGC TGTGTTTC C chr7:134680291-134680311 1 1.30e-04 . tgtgtttc tggcctcttc chr6:12011408-12011428 13 2.24e-04 TTTTAAAAGT TGTTTTTC chr2:47144968-47144988 13 2.24e-04 cactttcttc tcttgttt chr11:41330940-41330960 6 2.45e-04 TGATT TCTTTTTT TGAGCAC chr4:48198898-48198918 12 2.98e-04 CCTTCGAGGC TGTTATTT T chr10:64392394-64392414 8 2.98e-04 GTGTGTT TATGTTTT TGGGT chr6:164127166-164127186 5 2.98e-04 GTGC TGTTATTT TTGTTGTA chr16:11319432-11319452 10 3.34e-04 TTCTAGGCC TCTGGTTC CTT chr11:121338846-12133886 13 3.34e-04 AGAAAGGAGC TGTGGGTT chr10:52020680-52020700 5 3.88e-04 AGTT TCTGTTTC TTTTCTTA chr16:12058898-12058918 12 3.88e-04 ATAAGCAGTT TCTGTTTC A chr6:157089241-157089261 6 4.25e-04 CTACA TGTGTTCT TGGTCTG chr2:8562019-8562039 5 4.44e-04 gact tatttttt agcttaGT chr5:107857222-107857242 13 5.17e-04 ggtggcctat tttggttt chr16:21658681-21658701 8 5.17e-04 ACAGGCA TGTTGGTT GCTCA chrX:12975221-12975241 8 6.31e-04 TCAAAGG TGTTTTCT TACTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTKKTTT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:119114990-119115010 1.8e-05 3_[+3]_9 chr11:102431626-10243164 1.8e-05 7_[+3]_5 chr1:172715599-172715619 1.8e-05 1_[+3]_11 chr10:76555796-76555816 1.8e-05 [+3]_12 chrX:13275551-13275571 1.8e-05 8_[+3]_4 chr7:7855887-7855907 5.6e-05 9_[+3]_3 chr15:39719550-39719570 0.00013 11_[+3]_1 chr7:134680291-134680311 0.00013 [+3]_12 chr6:12011408-12011428 0.00022 12_[+3] chr2:47144968-47144988 0.00022 12_[+3] chr11:41330940-41330960 0.00024 5_[+3]_7 chr4:48198898-48198918 0.0003 11_[+3]_1 chr10:64392394-64392414 0.0003 7_[+3]_5 chr6:164127166-164127186 0.0003 4_[+3]_8 chr16:11319432-11319452 0.00033 9_[+3]_3 chr11:121338846-12133886 0.00033 12_[+3] chr10:52020680-52020700 0.00039 4_[+3]_8 chr16:12058898-12058918 0.00039 11_[+3]_1 chr6:157089241-157089261 0.00042 5_[+3]_7 chr2:8562019-8562039 0.00044 4_[+3]_8 chr5:107857222-107857242 0.00052 12_[+3] chr16:21658681-21658701 0.00052 7_[+3]_5 chrX:12975221-12975241 0.00063 7_[+3]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTKKTTT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTKKTTT width=8 seqs=23 chr3:119114990-119115010 ( 4) TGTGGTTT 1 chr11:102431626-10243164 ( 8) TGTGGTTT 1 chr1:172715599-172715619 ( 2) TGTGGTTT 1 chr10:76555796-76555816 ( 1) TGTGGTTT 1 chrX:13275551-13275571 ( 9) TGTGGTTT 1 chr7:7855887-7855907 ( 10) TGTTGTTT 1 chr15:39719550-39719570 ( 12) TGTGTTTC 1 chr7:134680291-134680311 ( 1) TGTGTTTC 1 chr6:12011408-12011428 ( 13) TGTTTTTC 1 chr2:47144968-47144988 ( 13) TCTTGTTT 1 chr11:41330940-41330960 ( 6) TCTTTTTT 1 chr4:48198898-48198918 ( 12) TGTTATTT 1 chr10:64392394-64392414 ( 8) TATGTTTT 1 chr6:164127166-164127186 ( 5) TGTTATTT 1 chr16:11319432-11319452 ( 10) TCTGGTTC 1 chr11:121338846-12133886 ( 13) TGTGGGTT 1 chr10:52020680-52020700 ( 5) TCTGTTTC 1 chr16:12058898-12058918 ( 12) TCTGTTTC 1 chr6:157089241-157089261 ( 6) TGTGTTCT 1 chr2:8562019-8562039 ( 5) TATTTTTT 1 chr5:107857222-107857242 ( 13) TTTGGTTT 1 chr16:21658681-21658701 ( 8) TGTTGGTT 1 chrX:12975221-12975241 ( 8) TGTTTTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTKKTTT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.2019 E= 1.2e+002 -1117 -1117 -1117 195 -146 -23 140 -257 -1117 -1117 -1117 195 -1117 -1117 130 59 -146 -1117 95 74 -1117 -1117 -151 181 -1117 -155 -1117 181 -1117 3 -1117 151 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTKKTTT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 1.2e+002 0.000000 0.000000 0.000000 1.000000 0.086957 0.217391 0.652174 0.043478 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.608696 0.391304 0.086957 0.000000 0.478261 0.434783 0.000000 0.000000 0.086957 0.913043 0.000000 0.086957 0.000000 0.913043 0.000000 0.260870 0.000000 0.739130 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTKKTTT MEME-3 regular expression -------------------------------------------------------------------------------- T[GC]T[GT][GT]TT[TC] -------------------------------------------------------------------------------- Time 5.67 secs. ******************************************************************************** ******************************************************************************** MOTIF RAAATAGM MEME-4 width = 8 sites = 8 llr = 74 E-value = 3.3e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif RAAATAGM MEME-4 Description -------------------------------------------------------------------------------- Simplified A 6aaa:9:6 pos.-specific C ::::11:4 probability G 4:::::a: matrix T ::::9::: bits 2.1 *** * 1.9 *** * 1.7 *** * 1.4 ****** Relative 1.2 ****** Entropy 1.0 ******** (13.3 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAATAGA consensus G C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAATAGM MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:137666554-137666574 13 1.20e-05 GTATTCTCCA AAAATAGA chr17:5322370-5322390 9 3.71e-05 cgaaacta aaaatagc aact chr7:101577104-101577124 1 3.71e-05 . AAAATAGC CATTCTGTCT chr6:145671321-145671341 11 3.71e-05 GTTTGAGGCA GAAATAGA CA chr5:123986050-123986070 4 3.71e-05 CCT AAAATAGC CCTCTTAAG chrX:13099943-13099963 8 3.71e-05 GTATTTA GAAATAGA TAGCA chr3:45902806-45902826 4 7.48e-05 AGT AAAATCGA GAACAGTGA chr2:88906363-88906383 9 9.95e-05 ACCTGTCT GAAACAGA AAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAATAGM MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:137666554-137666574 1.2e-05 12_[+4] chr17:5322370-5322390 3.7e-05 8_[+4]_4 chr7:101577104-101577124 3.7e-05 [+4]_12 chr6:145671321-145671341 3.7e-05 10_[+4]_2 chr5:123986050-123986070 3.7e-05 3_[+4]_9 chrX:13099943-13099963 3.7e-05 7_[+4]_5 chr3:45902806-45902826 7.5e-05 3_[+4]_9 chr2:88906363-88906383 9.9e-05 8_[+4]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAATAGM MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RAAATAGM width=8 seqs=8 chr7:137666554-137666574 ( 13) AAAATAGA 1 chr17:5322370-5322390 ( 9) AAAATAGC 1 chr7:101577104-101577124 ( 1) AAAATAGC 1 chr6:145671321-145671341 ( 11) GAAATAGA 1 chr5:123986050-123986070 ( 4) AAAATAGC 1 chrX:13099943-13099963 ( 8) GAAATAGA 1 chr3:45902806-45902826 ( 4) AAAATCGA 1 chr2:88906363-88906383 ( 9) GAAACAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAATAGM MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.66267 E= 3.3e+002 139 -965 60 -965 207 -965 -965 -965 207 -965 -965 -965 207 -965 -965 -965 -965 -103 -965 175 187 -103 -965 -965 -965 -965 202 -965 139 56 -965 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAATAGM MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 3.3e+002 0.625000 0.000000 0.375000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.125000 0.000000 0.875000 0.875000 0.125000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.625000 0.375000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAATAGM MEME-4 regular expression -------------------------------------------------------------------------------- [AG]AAATAG[AC] -------------------------------------------------------------------------------- Time 6.43 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAACAAG MEME-5 width = 8 sites = 4 llr = 41 E-value = 1.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAACAAG MEME-5 Description -------------------------------------------------------------------------------- Simplified A a8aa:a8: pos.-specific C ::::a::: probability G :3::::3a matrix T :::::::: bits 2.1 * **** * 1.9 * **** * 1.7 * **** * 1.4 * **** * Relative 1.2 ******** Entropy 1.0 ******** (14.7 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAACAAG consensus G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAACAAG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr5:133436281-133436301 4 1.17e-05 AGC AAAACAAG GTACTTTCA chr1:42193205-42193225 10 1.17e-05 GCAGAAACT AAAACAAG TGA chr11:76338136-76338156 12 3.60e-05 CAAGCCCGGA AGAACAAG A chr5:55982467-55982487 6 3.60e-05 GCTAA AAAACAGG AACTGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAACAAG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:133436281-133436301 1.2e-05 3_[+5]_9 chr1:42193205-42193225 1.2e-05 9_[+5]_3 chr11:76338136-76338156 3.6e-05 11_[+5]_1 chr5:55982467-55982487 3.6e-05 5_[+5]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAACAAG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAACAAG width=8 seqs=4 chr5:133436281-133436301 ( 4) AAAACAAG 1 chr1:42193205-42193225 ( 10) AAAACAAG 1 chr11:76338136-76338156 ( 12) AGAACAAG 1 chr5:55982467-55982487 ( 6) AAAACAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAACAAG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.4021 E= 1.2e+003 206 -865 -865 -865 165 -865 2 -865 206 -865 -865 -865 206 -865 -865 -865 -865 197 -865 -865 206 -865 -865 -865 165 -865 2 -865 -865 -865 201 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAACAAG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.2e+003 1.000000 0.000000 0.000000 0.000000 0.750000 0.000000 0.250000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.750000 0.000000 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAACAAG MEME-5 regular expression -------------------------------------------------------------------------------- A[AG]AACA[AG]G -------------------------------------------------------------------------------- Time 7.16 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:155137377-155137397 9.64e-01 20 chr17:1084625-1084645 1.32e-01 20 chr2:113394311-113394331 6.73e-02 20 chr8:61824926-61824946 4.46e-02 5_[+1(5.62e-05)]_7 chr1:221930725-221930745 7.97e-01 20 chr10:3977587-3977607 9.47e-01 20 chr15:101675971-10167599 9.12e-01 20 chr10:86077053-86077073 2.33e-02 20 chr19:39894631-39894651 3.42e-01 20 chr14:35885457-35885477 8.51e-01 20 chr1:158132948-158132968 8.94e-01 20 chrX:13099943-13099963 4.79e-03 7_[+4(3.71e-05)]_5 chr3:156382811-156382831 5.74e-02 20 chr3:45699602-45699622 1.29e-01 20 chr1:42193205-42193225 8.37e-05 9_[+5(1.17e-05)]_3 chr2:146351022-146351042 1.90e-01 20 chr9:102130753-102130773 2.45e-01 20 chr16:21658681-21658701 1.99e-01 20 chr10:64467781-64467801 9.57e-01 20 chr11:128341301-12834132 9.42e-01 20 chr20:56056036-56056056 1.80e-01 20 chr21:16250247-16250267 2.31e-01 20 chr6:138230076-138230096 9.86e-01 20 chr5:55982467-55982487 1.64e-04 5_[+5(3.60e-05)]_7 chr10:65046543-65046563 1.18e-01 20 chr2:202278996-202279016 1.28e-03 20 chr9:33164230-33164250 5.39e-01 20 chr17:38231907-38231927 7.56e-01 20 chr9:93970515-93970535 8.00e-01 20 chr2:48060786-48060806 6.84e-01 20 chr19:36394878-36394898 5.20e-01 20 chr20:10651418-10651438 1.50e-01 20 chr6:157978751-157978771 6.68e-01 20 chr1:108477382-108477402 4.56e-01 20 chr6:164127166-164127186 3.47e-01 20 chr18:77196072-77196092 8.04e-01 20 chr19:1664000-1664020 8.00e-01 20 chr11:64053225-64053245 9.90e-01 20 chr3:45919798-45919818 4.63e-01 20 chrX:41096078-41096098 2.25e-01 20 chr3:186733897-186733917 6.47e-01 20 chr16:78795467-78795487 5.58e-01 20 chr13:49554309-49554329 5.25e-01 20 chr8:142012424-142012444 1.28e-03 4_[+1(6.92e-05)]_8 chr16:89034606-89034626 7.04e-01 20 chr16:17228654-17228674 8.38e-01 20 chr14:93049541-93049561 8.01e-01 20 chr22:42258335-42258355 3.76e-01 20 chr4:185455902-185455922 1.34e-01 20 chr5:102596780-102596800 1.97e-01 20 chr2:7085444-7085464 8.52e-01 20 chr1:110359202-110359222 4.15e-01 20 chr4:171619647-171619667 6.49e-01 20 chr1:154833019-154833039 9.99e-01 20 chr2:38161834-38161854 9.80e-01 20 chr16:48570412-48570432 7.66e-01 20 chr5:123986050-123986070 1.06e-02 3_[+4(3.71e-05)]_9 chrX:13275551-13275571 6.51e-02 8_[+3(1.79e-05)]_4 chr12:70637190-70637210 2.93e-01 20 chr11:1876448-1876468 9.22e-01 20 chr6:14110389-14110409 8.54e-03 20 chr20:45181793-45181813 8.33e-01 20 chr22:35704859-35704879 8.51e-01 20 chr10:64392394-64392414 3.48e-01 20 chr19:18059022-18059042 7.81e-02 20 chr2:37617725-37617745 7.99e-01 20 chr9:127632671-127632691 9.98e-01 20 chr17:60802332-60802352 5.25e-01 20 chr2:47144968-47144988 1.04e-01 20 chr14:102783373-10278339 9.62e-01 20 chr5:107857222-107857242 3.94e-01 20 chr17:37912430-37912450 1.00e+00 20 chr19:36390782-36390802 9.75e-01 20 chr8:19554032-19554052 8.22e-02 20 chr8:142192596-142192616 9.12e-01 20 chr7:35768968-35768988 6.53e-01 20 chr11:75535503-75535523 8.81e-01 20 chr22:23227371-23227391 7.61e-01 20 chr15:59529496-59529516 7.08e-01 20 chr3:105585642-105585662 1.67e-01 20 chr11:128702154-12870217 6.16e-01 20 chr16:11763665-11763685 9.64e-01 20 chr5:56471578-56471598 3.29e-02 20 chr3:45902806-45902826 1.06e-03 3_[+4(7.48e-05)]_9 chr14:105393048-10539306 8.59e-01 20 chr17:38738853-38738873 2.63e-01 20 chr5:176881699-176881719 9.81e-01 20 chr17:37914471-37914491 1.05e-01 20 chr7:107279168-107279188 1.24e-01 20 chr1:178629047-178629067 2.35e-04 7_[+1(1.34e-05)]_5 chr5:113696866-113696886 9.33e-01 20 chr1:27113955-27113975 6.22e-01 20 chr5:175875192-175875212 9.84e-01 20 chr6:138261507-138261527 9.81e-01 20 chr9:102821130-102821150 9.55e-01 20 chr2:8562019-8562039 3.47e-01 20 chr8:132828236-132828256 9.20e-01 20 chr17:5146463-5146483 3.40e-01 20 chrX:41593404-41593424 3.38e-01 20 chr17:1087050-1087070 5.35e-01 20 chr19:6518276-6518296 9.88e-01 20 chr11:65905305-65905325 7.74e-01 20 chr4:86582068-86582088 9.94e-01 20 chr17:75877773-75877793 3.55e-01 20 chr5:1313246-1313266 9.69e-01 20 chr19:13319133-13319153 2.01e-03 20 chr6:181472-181492 9.35e-01 20 chr6:145671321-145671341 2.11e-03 10_[+4(3.71e-05)]_2 chr11:76338136-76338156 1.65e-03 11_[+5(3.60e-05)]_1 chr5:118676399-118676419 2.77e-01 20 chr21:43948113-43948133 8.84e-01 20 chrX:9431188-9431208 4.29e-02 10_[+1(5.62e-05)]_2 chr7:101577104-101577124 2.28e-03 [+4(3.71e-05)]_12 chr15:31296724-31296744 9.11e-01 20 chr3:69376171-69376191 7.22e-02 20 chr3:47517481-47517501 9.15e-01 20 chr1:230259160-230259180 6.12e-02 20 chr7:43528603-43528623 7.00e-01 20 chr20:37471338-37471358 3.65e-01 20 chr6:138188313-138188333 9.21e-01 20 chr1:150536053-150536073 2.63e-01 20 chr2:71292122-71292142 6.81e-01 20 chr1:205255869-205255889 8.54e-01 20 chr9:126899916-126899936 3.49e-01 20 chr16:75032752-75032772 5.99e-01 20 chr11:41330940-41330960 3.15e-01 20 chr6:157089241-157089261 3.17e-01 20 chr10:76555796-76555816 3.97e-02 [+3(1.79e-05)]_12 chr8:81050948-81050968 7.55e-01 20 chr9:137283325-137283345 9.77e-01 20 chr1:203296422-203296442 9.55e-01 20 chr8:27936481-27936501 7.08e-01 20 chr9:114792506-114792526 8.08e-01 20 chr1:157566336-157566356 8.70e-01 20 chr17:73029964-73029984 3.23e-02 7_[+2(3.85e-05)]_5 chr8:33412474-33412494 5.42e-02 20 chr7:101934995-101935015 1.08e-01 8_[+2(5.22e-05)]_4 chr3:39189724-39189744 9.31e-01 20 chr6:31528186-31528206 7.28e-01 20 chr3:182762498-182762518 5.51e-01 20 chr10:115441782-11544180 2.27e-01 20 chr1:172715599-172715619 7.14e-02 1_[+3(1.79e-05)]_11 chr12:127526786-12752680 2.42e-01 20 chr2:88906363-88906383 3.83e-03 8_[+4(9.95e-05)]_4 chr2:219433495-219433515 6.18e-02 20 chr6:18263441-18263461 3.39e-01 20 chr12:80693189-80693209 9.45e-01 20 chr11:7533905-7533925 1.58e-02 7_[+2(1.32e-05)]_5 chr10:22895318-22895338 6.59e-01 20 chr5:158854746-158854766 1.22e-02 20 chr7:45018776-45018796 9.87e-01 20 chr4:2698270-2698290 7.14e-01 20 chr1:221950264-221950284 1.06e-02 4_[+1(5.62e-05)]_8 chr7:7855887-7855907 1.42e-01 9_[+3(5.56e-05)]_3 chr3:23632597-23632617 9.49e-01 20 chr3:141098592-141098612 6.58e-01 20 chr11:10463739-10463759 9.25e-01 20 chr20:57483090-57483110 2.70e-01 20 chr1:27959451-27959471 9.06e-01 20 chr1:184915368-184915388 9.33e-01 20 chr20:62339278-62339298 8.80e-01 20 chr1:154836354-154836374 4.55e-01 20 chr18:13612430-13612450 5.33e-01 20 chr12:48206928-48206948 5.45e-01 20 chr16:12058898-12058918 3.60e-02 20 chr7:134680291-134680311 2.29e-01 20 chr16:85936470-85936490 9.92e-01 20 chr17:5322370-5322390 1.65e-03 8_[+4(3.71e-05)]_4 chr3:23695151-23695171 3.75e-01 20 chr16:75413446-75413466 1.16e-02 20 chr4:26133498-26133518 1.95e-01 20 chr22:50329918-50329938 8.76e-01 20 chr8:38662978-38662998 1.42e-01 20 chr16:68390494-68390514 7.80e-02 20 chr2:37232531-37232551 9.99e-01 20 chr8:102924050-102924070 8.26e-01 20 chr11:9636821-9636841 8.95e-01 20 chr19:12899650-12899670 8.68e-01 20 chr19:16482595-16482615 1.13e-01 20 chr8:141599038-141599058 7.12e-01 20 chr9:135257641-135257661 3.83e-05 10_[+1(1.34e-05)]_2 chr16:75353858-75353878 7.87e-01 20 chr3:105086890-105086910 9.34e-01 20 chr6:12011408-12011428 1.24e-02 20 chr1:159893572-159893592 3.88e-01 20 chr1:235098527-235098547 5.46e-01 20 chr3:119042075-119042095 9.99e-01 20 chr8:142046319-142046339 9.67e-01 20 chr19:50922965-50922985 7.75e-01 20 chr11:102431626-10243164 6.73e-02 7_[+3(1.79e-05)]_5 chr3:193849137-193849157 1.06e-01 20 chr7:5739863-5739883 2.24e-03 8_[+1(1.34e-05)]_4 chr5:133377758-133377778 1.50e-02 20 chr3:15313466-15313486 5.63e-01 20 chr10:112288885-11228890 7.84e-01 20 chr9:132751491-132751511 9.41e-01 20 chr19:7808596-7808616 5.24e-01 20 chr4:123463739-123463759 9.39e-01 20 chr1:61798074-61798094 1.71e-02 10_[+1(5.62e-05)]_2 chr21:33508447-33508467 4.49e-01 20 chr7:101500149-101500169 9.82e-01 20 chr11:121338846-12133886 5.72e-04 20 chr12:113508174-11350819 9.14e-01 20 chr2:25643837-25643857 5.13e-01 20 chr22:40353081-40353101 4.05e-05 11_[+1(1.34e-05)]_1 chr5:118367205-118367225 8.10e-01 20 chr8:142123619-142123639 2.51e-02 20 chr9:140600124-140600144 7.70e-02 20 chr22:42000144-42000164 9.42e-01 20 chr6:36326475-36326495 1.02e-01 20 chr10:135088586-13508860 3.37e-01 20 chr1:111506837-111506857 4.11e-01 20 chr22:22222407-22222427 3.99e-01 20 chr10:52020680-52020700 3.88e-01 20 chr15:81589247-81589267 6.08e-01 20 chr3:194980756-194980776 1.88e-02 20 chr1:42217864-42217884 6.11e-01 20 chr11:108491785-10849180 4.15e-01 20 chr14:69281403-69281423 2.87e-01 20 chr2:111977117-111977137 8.27e-01 20 chr16:12060275-12060295 9.99e-01 20 chr17:1987158-1987178 8.27e-02 20 chr5:131975655-131975675 7.74e-01 20 chr8:11396723-11396743 4.96e-02 20 chr7:137666554-137666574 1.15e-04 12_[+4(1.20e-05)] chr1:157565295-157565315 3.11e-01 20 chr16:11319432-11319452 3.44e-01 20 chr16:22207093-22207113 6.92e-01 20 chr1:205718616-205718636 9.87e-01 20 chr3:119114990-119115010 5.60e-04 3_[+3(1.79e-05)]_9 chr6:90067195-90067215 1.64e-01 20 chr15:39719550-39719570 3.14e-02 20 chr3:105556223-105556243 2.06e-01 20 chr3:5020430-5020450 5.49e-01 20 chr8:67026405-67026425 8.27e-01 20 chr13:109815273-10981529 7.07e-01 20 chr1:9686377-9686397 6.70e-02 20 chr11:128422925-12842294 9.05e-01 20 chr17:43306579-43306599 6.15e-01 20 chr18:74212109-74212129 7.00e-01 20 chr12:48201998-48202018 7.57e-01 20 chr1:200597554-200597574 5.68e-01 20 chr2:231738542-231738562 1.40e-01 20 chr12:25228113-25228133 8.82e-01 20 chr2:64319794-64319814 5.50e-01 20 chrX:12975221-12975241 7.78e-02 20 chr4:48198898-48198918 2.94e-01 20 chr3:177077812-177077832 9.96e-01 20 chr5:133436281-133436301 1.03e-03 3_[+5(1.17e-05)]_9 chr12:26624694-26624714 4.06e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n04.farnam.hpc.yale.internal ********************************************************************************