******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/TAF1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr19:45505129-45505149 1.0000 20 chr5:108063409-108063429 1.0000 20 chr5:88178989-88179009 1.0000 20 chr9:132805423-132805443 1.0000 20 chrX:73072529-73072549 1.0000 20 chr8:56792387-56792407 1.0000 20 chr12:117628249-11762826 1.0000 20 chr12:131996038-13199605 1.0000 20 chr6:30923452-30923472 1.0000 20 chr17:3572142-3572162 1.0000 20 chr22:38006055-38006075 1.0000 20 chr4:6179695-6179715 1.0000 20 chr17:72744764-72744784 1.0000 20 chr11:118661981-11866200 1.0000 20 chr5:153570304-153570324 1.0000 20 chr3:69129484-69129504 1.0000 20 chr8:8243912-8243932 1.0000 20 chr20:37434256-37434276 1.0000 20 chr2:111878473-111878493 1.0000 20 chr20:57464234-57464254 1.0000 20 chr3:52312610-52312630 1.0000 20 chr19:51898800-51898820 1.0000 20 chr3:156392378-156392398 1.0000 20 chr3:50273631-50273651 1.0000 20 chr10:120840318-12084033 1.0000 20 chr2:58135955-58135975 1.0000 20 chr5:94417319-94417339 1.0000 20 chr8:41909496-41909516 1.0000 20 chr5:60628070-60628090 1.0000 20 chr3:180630471-180630491 1.0000 20 chr2:242295707-242295727 1.0000 20 chr19:5978092-5978112 1.0000 20 chrX:1571749-1571769 1.0000 20 chr4:2010668-2010688 1.0000 20 chr1:23495334-23495354 1.0000 20 chr2:98262526-98262546 1.0000 20 chr17:16118860-16118880 1.0000 20 chr9:139702385-139702405 1.0000 20 chr8:103876370-103876390 1.0000 20 chr1:159895252-159895272 1.0000 20 chr2:86426627-86426647 1.0000 20 chr18:2972317-2972337 1.0000 20 chr20:48285202-48285222 1.0000 20 chr1:161129301-161129321 1.0000 20 chr6:161695256-161695276 1.0000 20 chr11:129939774-12993979 1.0000 20 chr1:205600265-205600285 1.0000 20 chrX:48858613-48858633 1.0000 20 chr10:120938261-12093828 1.0000 20 chr7:43622727-43622747 1.0000 20 chr2:42360264-42360284 1.0000 20 chrX:102470047-102470067 1.0000 20 chr2:192542848-192542868 1.0000 20 chr5:134210012-134210032 1.0000 20 chr19:47291815-47291835 1.0000 20 chr5:172124552-172124572 1.0000 20 chr6:43543928-43543948 1.0000 20 chr4:6642404-6642424 1.0000 20 chr9:72374837-72374857 1.0000 20 chr5:52856479-52856499 1.0000 20 chr21:42798100-42798120 1.0000 20 chr3:194406627-194406647 1.0000 20 chr2:162016958-162016978 1.0000 20 chr10:74451917-74451937 1.0000 20 chr9:113018749-113018769 1.0000 20 chr2:128459098-128459118 1.0000 20 chr12:12420329-12420349 1.0000 20 chr17:40021636-40021656 1.0000 20 chr21:30671244-30671264 1.0000 20 chr4:17579120-17579140 1.0000 20 chr17:37026298-37026318 1.0000 20 chr9:139305098-139305118 1.0000 20 chr1:52344349-52344369 1.0000 20 chr15:91209029-91209049 1.0000 20 chr15:75494274-75494294 1.0000 20 chr11:64864118-64864138 1.0000 20 chr14:23564280-23564300 1.0000 20 chr20:33543513-33543533 1.0000 20 chr2:55459811-55459831 1.0000 20 chr17:15903126-15903146 1.0000 20 chr7:134896205-134896225 1.0000 20 chr1:162467645-162467665 1.0000 20 chr12:95867901-95867921 1.0000 20 chr1:28157319-28157339 1.0000 20 chr18:56338727-56338747 1.0000 20 chr6:43445325-43445345 1.0000 20 chr6:32657539-32657559 1.0000 20 chr15:45018957-45018977 1.0000 20 chr6:57182444-57182464 1.0000 20 chr2:74405581-74405601 1.0000 20 chr17:77813237-77813257 1.0000 20 chr15:52311438-52311458 1.0000 20 chr7:127032737-127032757 1.0000 20 chr6:114178526-114178546 1.0000 20 chr17:47288062-47288082 1.0000 20 chr6:157008462-157008482 1.0000 20 chr17:28443871-28443891 1.0000 20 chr16:67840420-67840440 1.0000 20 chr9:86594525-86594545 1.0000 20 chr1:76190413-76190433 1.0000 20 chr8:74205795-74205815 1.0000 20 chr10:105128462-10512848 1.0000 20 chr12:6976682-6976702 1.0000 20 chr5:158527488-158527508 1.0000 20 chr7:116502685-116502705 1.0000 20 chr22:34316991-34317011 1.0000 20 chr3:185655240-185655260 1.0000 20 chr12:123849363-12384938 1.0000 20 chr8:101734300-101734320 1.0000 20 chr1:12227035-12227055 1.0000 20 chr5:151138100-151138120 1.0000 20 chr16:31885128-31885148 1.0000 20 chr19:1021091-1021111 1.0000 20 chr5:180688104-180688124 1.0000 20 chr11:82868176-82868196 1.0000 20 chr6:34393815-34393835 1.0000 20 chr1:43424520-43424540 1.0000 20 chr14:50528603-50528623 1.0000 20 chr20:2633272-2633292 1.0000 20 chr19:56135880-56135900 1.0000 20 chrX:77150926-77150946 1.0000 20 chr2:223725743-223725763 1.0000 20 chr22:42394841-42394861 1.0000 20 chr3:185655765-185655785 1.0000 20 chr4:77870905-77870925 1.0000 20 chrX:48776286-48776306 1.0000 20 chr3:53916133-53916153 1.0000 20 chr1:113162470-113162490 1.0000 20 chr8:42196021-42196041 1.0000 20 chr4:122618082-122618102 1.0000 20 chr5:36876750-36876770 1.0000 20 chr5:179159817-179159837 1.0000 20 chr14:62162229-62162249 1.0000 20 chr5:177558025-177558045 1.0000 20 chr11:65627171-65627191 1.0000 20 chrX:118708514-118708534 1.0000 20 chrX:74376103-74376123 1.0000 20 chr5:137090044-137090064 1.0000 20 chr1:222791473-222791493 1.0000 20 chr20:278189-278209 1.0000 20 chr3:183966716-183966736 1.0000 20 chr11:67205131-67205151 1.0000 20 chr6:391769-391789 1.0000 20 chr15:42783427-42783447 1.0000 20 chr5:131826422-131826442 1.0000 20 chr19:1174237-1174257 1.0000 20 chr9:32552357-32552377 1.0000 20 chr1:62901877-62901897 1.0000 20 chr2:62423266-62423286 1.0000 20 chr5:170814467-170814487 1.0000 20 chr15:69745151-69745171 1.0000 20 chr1:158979679-158979699 1.0000 20 chr1:68150879-68150899 1.0000 20 chr11:47447777-47447797 1.0000 20 chr15:69110570-69110590 1.0000 20 chr10:89623375-89623395 1.0000 20 chr10:131934660-13193468 1.0000 20 chr1:100503680-100503700 1.0000 20 chrX:100646005-100646025 1.0000 20 chr21:19191664-19191684 1.0000 20 chr5:72143958-72143978 1.0000 20 chr4:113207037-113207057 1.0000 20 chr4:3534101-3534121 1.0000 20 chr19:38865423-38865443 1.0000 20 chr17:5185578-5185598 1.0000 20 chr6:89790457-89790477 1.0000 20 chr5:176924584-176924604 1.0000 20 chr11:69490086-69490106 1.0000 20 chr1:110026613-110026633 1.0000 20 chr2:234475394-234475414 1.0000 20 chr9:131419303-131419323 1.0000 20 chr1:160232216-160232236 1.0000 20 chr19:21512165-21512185 1.0000 20 chr17:25621138-25621158 1.0000 20 chr10:105127719-10512773 1.0000 20 chr1:185286360-185286380 1.0000 20 chr6:107150451-107150471 1.0000 20 chr1:24151878-24151898 1.0000 20 chr9:123605186-123605206 1.0000 20 chr6:42713751-42713771 1.0000 20 chr6:16129309-16129329 1.0000 20 chr4:57333803-57333823 1.0000 20 chr5:114880420-114880440 1.0000 20 chr16:15982404-15982424 1.0000 20 chr9:140024135-140024155 1.0000 20 chr9:131709968-131709988 1.0000 20 chr11:107328527-10732854 1.0000 20 chr22:39795809-39795829 1.0000 20 chr11:67007482-67007502 1.0000 20 chr3:4535025-4535045 1.0000 20 chr7:141251144-141251164 1.0000 20 chr9:74980120-74980140 1.0000 20 chr1:100715360-100715380 1.0000 20 chr3:186288075-186288095 1.0000 20 chr6:86388424-86388444 1.0000 20 chrX:134654577-134654597 1.0000 20 chr1:32801830-32801850 1.0000 20 chr10:72163886-72163906 1.0000 20 chr16:31724600-31724620 1.0000 20 chr5:110848185-110848205 1.0000 20 chr2:197036281-197036301 1.0000 20 chr17:62502367-62502387 1.0000 20 chr10:22725988-22726008 1.0000 20 chr4:100737981-100738001 1.0000 20 chr19:12845452-12845472 1.0000 20 chr3:67704982-67705002 1.0000 20 chr17:56416527-56416547 1.0000 20 chr6:139695777-139695797 1.0000 20 chr3:44690156-44690176 1.0000 20 chr1:150336220-150336240 1.0000 20 chr1:155948315-155948335 1.0000 20 chr2:61108699-61108719 1.0000 20 chr2:69664541-69664561 1.0000 20 chr12:111180679-11118069 1.0000 20 chr8:124286494-124286514 1.0000 20 chr17:46985748-46985768 1.0000 20 chr5:32585670-32585690 1.0000 20 chr20:44746943-44746963 1.0000 20 chr19:8509868-8509888 1.0000 20 chr2:70121079-70121099 1.0000 20 chr5:90679120-90679140 1.0000 20 chr7:99613215-99613235 1.0000 20 chr2:175462478-175462498 1.0000 20 chr1:36626687-36626707 1.0000 20 chr1:78443957-78443977 1.0000 20 chr4:2470858-2470878 1.0000 20 chr2:25509018-25509038 1.0000 20 chr13:26796465-26796485 1.0000 20 chr3:9439125-9439145 1.0000 20 chr8:20054921-20054941 1.0000 20 chr19:55897310-55897330 1.0000 20 chr17:6544369-6544389 1.0000 20 chr11:2721215-2721235 1.0000 20 chr12:31479063-31479083 1.0000 20 chr8:97247747-97247767 1.0000 20 chr19:12163733-12163753 1.0000 20 chr2:67624497-67624517 1.0000 20 chr2:191745541-191745561 1.0000 20 chr15:93426020-93426040 1.0000 20 chr2:158300523-158300543 1.0000 20 chr18:52989055-52989075 1.0000 20 chr4:6675785-6675805 1.0000 20 chr6:134495992-134496012 1.0000 20 chr9:74526099-74526119 1.0000 20 chr18:11149542-11149562 1.0000 20 chr11:57103388-57103408 1.0000 20 chr7:44240559-44240579 1.0000 20 chr22:39101972-39101992 1.0000 20 chr15:42264729-42264749 1.0000 20 chr22:19929339-19929359 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_TAF1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/TAF1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.175 C 0.313 G 0.33 T 0.182 Background letter frequencies (from file dataset with add-one prior applied): A 0.175 C 0.313 G 0.33 T 0.182 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCCATCTT MEME-1 width = 8 sites = 13 llr = 124 E-value = 2.6e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCATCTT MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::a:::: pos.-specific C :8a::6:: probability G 82:::21: matrix T 2:::a29a bits 2.5 ** * 2.3 ** * 2.0 ** ** 1.8 *** ** Relative 1.5 *** ** Entropy 1.3 *** ** (13.8 bits) 1.0 ***** ** 0.8 ***** ** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCCATCTT consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATCTT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:69664541-69664561 9 1.07e-05 CCGTCGCC GCCATCTT AGTC chr1:100715360-100715380 12 1.07e-05 ACGGACTGCA GCCATCTT A chr1:160232216-160232236 13 1.07e-05 caacgccgcc gccatctt chr11:47447777-47447797 1 1.07e-05 . GCCATCTT CTCCTGCCGA chr3:183966716-183966736 8 1.07e-05 CCCAGCC GCCATCTT AACGG chr12:117628249-11762826 8 1.07e-05 tgccgcc gccATCTT GTCCG chr8:97247747-97247767 7 1.69e-05 TTACCA GCCATTTT GACCAG chr2:234475394-234475414 3 3.40e-05 CC GCCATGTT GGCGAGGGCG chr9:72374837-72374857 13 3.40e-05 GCTGGTCTCG GCCATGTT chr4:6642404-6642424 5 3.75e-05 GGAC TCCATTTT GTTCGCCG chr4:2470858-2470878 3 4.87e-05 GC GGCATCTT TCTCGAGGAG chr11:107328527-10732854 11 8.70e-05 CATACTTGTT GCCATCGT AA chr18:52989055-52989075 3 1.02e-04 GT TGCATTTT CCCATATGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATCTT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:69664541-69664561 1.1e-05 8_[+1]_4 chr1:100715360-100715380 1.1e-05 11_[+1]_1 chr1:160232216-160232236 1.1e-05 12_[+1] chr11:47447777-47447797 1.1e-05 [+1]_12 chr3:183966716-183966736 1.1e-05 7_[+1]_5 chr12:117628249-11762826 1.1e-05 7_[+1]_5 chr8:97247747-97247767 1.7e-05 6_[+1]_6 chr2:234475394-234475414 3.4e-05 2_[+1]_10 chr9:72374837-72374857 3.4e-05 12_[+1] chr4:6642404-6642424 3.7e-05 4_[+1]_8 chr4:2470858-2470878 4.9e-05 2_[+1]_10 chr11:107328527-10732854 8.7e-05 10_[+1]_2 chr18:52989055-52989075 0.0001 2_[+1]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATCTT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCATCTT width=8 seqs=13 chr2:69664541-69664561 ( 9) GCCATCTT 1 chr1:100715360-100715380 ( 12) GCCATCTT 1 chr1:160232216-160232236 ( 13) GCCATCTT 1 chr11:47447777-47447797 ( 1) GCCATCTT 1 chr3:183966716-183966736 ( 8) GCCATCTT 1 chr12:117628249-11762826 ( 8) GCCATCTT 1 chr8:97247747-97247767 ( 7) GCCATTTT 1 chr2:234475394-234475414 ( 3) GCCATGTT 1 chr9:72374837-72374857 ( 13) GCCATGTT 1 chr4:6642404-6642424 ( 5) TCCATTTT 1 chr4:2470858-2470878 ( 3) GGCATCTT 1 chr11:107328527-10732854 ( 11) GCCATCGT 1 chr18:52989055-52989075 ( 3) TGCATTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATCTT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.4923 E= 2.6e-005 -1035 -1035 136 -24 -1035 143 -110 -1035 -1035 167 -1035 -1035 251 -1035 -1035 -1035 -1035 -1035 -1035 246 -1035 97 -110 35 -1035 -1035 -210 234 -1035 -1035 -1035 246 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATCTT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 2.6e-005 0.000000 0.000000 0.846154 0.153846 0.000000 0.846154 0.153846 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.615385 0.153846 0.230769 0.000000 0.000000 0.076923 0.923077 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATCTT MEME-1 regular expression -------------------------------------------------------------------------------- GCCAT[CT]TT -------------------------------------------------------------------------------- Time 2.54 secs. ******************************************************************************** ******************************************************************************** MOTIF AAGATGGC MEME-2 width = 8 sites = 10 llr = 99 E-value = 6.3e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAGATGGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 8a1a:::: pos.-specific C 2:1::::a probability G ::6::aa: matrix T ::2:a::: bits 2.5 * ** 2.3 * ** 2.0 * ** 1.8 * ** * Relative 1.5 ** ***** Entropy 1.3 ** ***** (14.3 bits) 1.0 ** ***** 0.8 ** ***** 0.5 ** ***** 0.3 ******** 0.0 -------- Multilevel AAGATGGC consensus C T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGATGGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:38865423-38865443 5 1.10e-05 ACGC AAGATGGC GGCCGCGG chr3:185655240-185655260 12 1.10e-05 CCGCCAGCCC AAGATGGC T chr6:43445325-43445345 5 1.10e-05 CGGC AAGATGGC GGCCTGAA chr2:128459098-128459118 2 1.10e-05 C AAGATGGC GGACCTCCAC chr5:52856479-52856499 11 1.10e-05 TGCCTGCAGC AAGATGGC GG chr1:161129301-161129321 10 1.10e-05 GGACCAACA AAGATGGC GGC chr19:8509868-8509888 12 2.28e-05 AGACGCGGAG AAAATGGC G chr15:69110570-69110590 10 3.32e-05 gccccgggA AACATGGC TGC chr18:52989055-52989075 13 6.37e-05 TGCATTTTCC CATATGGC chr6:32657539-32657559 8 6.37e-05 TTCGCTG CATATGGC CTGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGATGGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:38865423-38865443 1.1e-05 4_[+2]_8 chr3:185655240-185655260 1.1e-05 11_[+2]_1 chr6:43445325-43445345 1.1e-05 4_[+2]_8 chr2:128459098-128459118 1.1e-05 1_[+2]_11 chr5:52856479-52856499 1.1e-05 10_[+2]_2 chr1:161129301-161129321 1.1e-05 9_[+2]_3 chr19:8509868-8509888 2.3e-05 11_[+2]_1 chr15:69110570-69110590 3.3e-05 9_[+2]_3 chr18:52989055-52989075 6.4e-05 12_[+2] chr6:32657539-32657559 6.4e-05 7_[+2]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGATGGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAGATGGC width=8 seqs=10 chr19:38865423-38865443 ( 5) AAGATGGC 1 chr3:185655240-185655260 ( 12) AAGATGGC 1 chr6:43445325-43445345 ( 5) AAGATGGC 1 chr2:128459098-128459118 ( 2) AAGATGGC 1 chr5:52856479-52856499 ( 11) AAGATGGC 1 chr1:161129301-161129321 ( 10) AAGATGGC 1 chr19:8509868-8509888 ( 12) AAAATGGC 1 chr15:69110570-69110590 ( 10) AACATGGC 1 chr18:52989055-52989075 ( 13) CATATGGC 1 chr6:32657539-32657559 ( 8) CATATGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGATGGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.5921 E= 6.3e-003 219 -65 -997 -997 251 -997 -997 -997 -81 -164 86 14 251 -997 -997 -997 -997 -997 -997 246 -997 -997 160 -997 -997 -997 160 -997 -997 167 -997 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGATGGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 6.3e-003 0.800000 0.200000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.100000 0.100000 0.600000 0.200000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGATGGC MEME-2 regular expression -------------------------------------------------------------------------------- [AC]A[GT]ATGGC -------------------------------------------------------------------------------- Time 3.43 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGTSGCT MEME-3 width = 8 sites = 11 llr = 95 E-value = 1.5e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGTSGCT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :a:3:1:: pos.-specific C a::15:a: probability G ::a:57:: matrix T :::6:2:a bits 2.5 * * 2.3 * * 2.0 * * 1.8 ** ** Relative 1.5 *** ** Entropy 1.3 **** ** (12.5 bits) 1.0 **** ** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CAGTCGCT consensus AG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTSGCT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr22:39101972-39101992 3 1.94e-05 CG CAGTCGCT CCGCGATGGA chr2:192542848-192542868 13 1.94e-05 GCGTGTTCAT CAGTCGCT chr3:50273631-50273651 4 1.94e-05 CCG CAGTCGCT CGGAACTGC chr1:68150879-68150899 4 3.98e-05 CTC CAGTGGCT GGTAGGCAG chr6:57182444-57182464 10 3.98e-05 ACCCGGGAA CAGTGGCT GCC chr16:31724600-31724620 4 6.91e-05 GCT CAGTCTCT TCACCAGGG chr2:223725743-223725763 10 6.91e-05 TCCGCTCAA CAGACGCT GCT chr17:25621138-25621158 1 9.99e-05 . CAGTGTCT CGTTTGCAGT chr17:47288062-47288082 10 9.99e-05 GGAGCCAGA CAGAGGCT GGG chr18:2972317-2972337 7 1.62e-04 TCGCGG CAGAGACT GCTGGT chr5:153570304-153570324 12 1.96e-04 GCCGGCGCCG CAGCCGCT T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTSGCT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr22:39101972-39101992 1.9e-05 2_[+3]_10 chr2:192542848-192542868 1.9e-05 12_[+3] chr3:50273631-50273651 1.9e-05 3_[+3]_9 chr1:68150879-68150899 4e-05 3_[+3]_9 chr6:57182444-57182464 4e-05 9_[+3]_3 chr16:31724600-31724620 6.9e-05 3_[+3]_9 chr2:223725743-223725763 6.9e-05 9_[+3]_3 chr17:25621138-25621158 0.0001 [+3]_12 chr17:47288062-47288082 0.0001 9_[+3]_3 chr18:2972317-2972337 0.00016 6_[+3]_6 chr5:153570304-153570324 0.0002 11_[+3]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTSGCT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGTSGCT width=8 seqs=11 chr22:39101972-39101992 ( 3) CAGTCGCT 1 chr2:192542848-192542868 ( 13) CAGTCGCT 1 chr3:50273631-50273651 ( 4) CAGTCGCT 1 chr1:68150879-68150899 ( 4) CAGTGGCT 1 chr6:57182444-57182464 ( 10) CAGTGGCT 1 chr16:31724600-31724620 ( 4) CAGTCTCT 1 chr2:223725743-223725763 ( 10) CAGACGCT 1 chr17:25621138-25621158 ( 1) CAGTGTCT 1 chr17:47288062-47288082 ( 10) CAGAGGCT 1 chr18:2972317-2972337 ( 7) CAGAGACT 1 chr5:153570304-153570324 ( 12) CAGCCGCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTSGCT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.75266 E= 1.5e+002 -1010 167 -1010 -1010 251 -1010 -1010 -1010 -1010 -1010 160 -1010 64 -178 -1010 181 -1010 80 46 -1010 -95 -1010 114 0 -1010 167 -1010 -1010 -1010 -1010 -1010 246 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTSGCT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 1.5e+002 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.272727 0.090909 0.000000 0.636364 0.000000 0.545455 0.454545 0.000000 0.090909 0.000000 0.727273 0.181818 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTSGCT MEME-3 regular expression -------------------------------------------------------------------------------- CAG[TA][CG]GCT -------------------------------------------------------------------------------- Time 4.20 secs. ******************************************************************************** ******************************************************************************** MOTIF CTTGCAGT MEME-4 width = 8 sites = 7 llr = 68 E-value = 9.0e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTTGCAGT MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::1a:: pos.-specific C 93::9::: probability G :::9::a: matrix T 17a1:::a bits 2.5 * * * 2.3 * * * 2.0 * * * 1.8 * * * Relative 1.5 * *** Entropy 1.3 ******** (13.9 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CTTGCAGT consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTGCAGT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:197036281-197036301 6 1.13e-05 CGAAG CTTGCAGT CGCGGTT chr5:108063409-108063429 5 1.13e-05 GCAC CTTGCAGT ATTGACAG chr1:162467645-162467665 1 1.75e-05 . CTTGAAGT CCCGGGAGTC chr17:25621138-25621158 11 3.03e-05 CAGTGTCTCG TTTGCAGT CG chr1:12227035-12227055 8 3.03e-05 GCTTTCG CTTTCAGT CGAGG chr12:31479063-31479083 11 4.97e-05 AAGATAGTCT CCTGCAGT TC chr17:15903126-15903146 7 4.97e-05 GTCTGG CCTGCAGT GCGCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTGCAGT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:197036281-197036301 1.1e-05 5_[+4]_7 chr5:108063409-108063429 1.1e-05 4_[+4]_8 chr1:162467645-162467665 1.8e-05 [+4]_12 chr17:25621138-25621158 3e-05 10_[+4]_2 chr1:12227035-12227055 3e-05 7_[+4]_5 chr12:31479063-31479083 5e-05 10_[+4]_2 chr17:15903126-15903146 5e-05 6_[+4]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTGCAGT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTTGCAGT width=8 seqs=7 chr2:197036281-197036301 ( 6) CTTGCAGT 1 chr5:108063409-108063429 ( 5) CTTGCAGT 1 chr1:162467645-162467665 ( 1) CTTGAAGT 1 chr17:25621138-25621158 ( 11) TTTGCAGT 1 chr1:12227035-12227055 ( 8) CTTTCAGT 1 chr12:31479063-31479083 ( 11) CCTGCAGT 1 chr17:15903126-15903146 ( 7) CCTGCAGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTGCAGT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.69928 E= 9.0e+002 -945 145 -945 -35 -945 -13 -945 197 -945 -945 -945 246 -945 -945 138 -35 -30 145 -945 -945 251 -945 -945 -945 -945 -945 160 -945 -945 -945 -945 246 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTGCAGT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 9.0e+002 0.000000 0.857143 0.000000 0.142857 0.000000 0.285714 0.000000 0.714286 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.857143 0.142857 0.142857 0.857143 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTGCAGT MEME-4 regular expression -------------------------------------------------------------------------------- C[TC]TGCAGT -------------------------------------------------------------------------------- Time 5.14 secs. ******************************************************************************** ******************************************************************************** MOTIF TTGYTKCY MEME-5 width = 8 sites = 9 llr = 83 E-value = 1.1e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTGYTKCY MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::3::a3 probability G 1:a:13:: matrix T 9a:797:7 bits 2.5 * 2.3 * 2.0 * 1.8 ** * * Relative 1.5 *** * * Entropy 1.3 ******** (13.3 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TTGTTTCT consensus C G C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGYTKCY MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:70121079-70121099 13 1.67e-05 TGTTGCACAG TTGTTTCC chr21:19191664-19191684 11 1.67e-05 TCCTCCACTA TTGTTTCC GG chr10:131934660-13193468 1 1.67e-05 . TTGCTTCT GTCTggcggc chr1:158979679-158979699 4 1.67e-05 ACA TTGTTTCC TACTCCATT chr6:89790457-89790477 11 2.35e-05 CTGTGGCTAT TTGTTGCT GC chr2:98262526-98262546 3 5.80e-05 TT TTGCTGCT AGTCGCGGAC chr5:94417319-94417339 1 5.80e-05 . TTGCTGCT CTGCACAGCA chr7:99613215-99613235 12 7.16e-05 TTGTGACTCA TTGTGTCT G chr6:139695777-139695797 7 7.16e-05 TGAGCT GTGTTTCT TAGGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGYTKCY MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:70121079-70121099 1.7e-05 12_[+5] chr21:19191664-19191684 1.7e-05 10_[+5]_2 chr10:131934660-13193468 1.7e-05 [+5]_12 chr1:158979679-158979699 1.7e-05 3_[+5]_9 chr6:89790457-89790477 2.3e-05 10_[+5]_2 chr2:98262526-98262546 5.8e-05 2_[+5]_10 chr5:94417319-94417339 5.8e-05 [+5]_12 chr7:99613215-99613235 7.2e-05 11_[+5]_1 chr6:139695777-139695797 7.2e-05 6_[+5]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGYTKCY MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTGYTKCY width=8 seqs=9 chr2:70121079-70121099 ( 13) TTGTTTCC 1 chr21:19191664-19191684 ( 11) TTGTTTCC 1 chr10:131934660-13193468 ( 1) TTGCTTCT 1 chr1:158979679-158979699 ( 4) TTGTTTCC 1 chr6:89790457-89790477 ( 11) TTGTTGCT 1 chr2:98262526-98262546 ( 3) TTGCTGCT 1 chr5:94417319-94417339 ( 1) TTGCTGCT 1 chr7:99613215-99613235 ( 12) TTGTGTCT 1 chr6:139695777-139695797 ( 7) GTGTTTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGYTKCY MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.62696 E= 1.1e+002 -982 -982 -157 229 -982 -982 -982 246 -982 -982 160 -982 -982 9 -982 187 -982 -982 -157 229 -982 -982 2 187 -982 167 -982 -982 -982 9 -982 187 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGYTKCY MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 1.1e+002 0.000000 0.000000 0.111111 0.888889 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.000000 0.666667 0.000000 0.000000 0.111111 0.888889 0.000000 0.000000 0.333333 0.666667 0.000000 1.000000 0.000000 0.000000 0.000000 0.333333 0.000000 0.666667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGYTKCY MEME-5 regular expression -------------------------------------------------------------------------------- TTG[TC]T[TG]C[TC] -------------------------------------------------------------------------------- Time 5.90 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:45505129-45505149 9.80e-01 20 chr5:108063409-108063429 2.66e-03 4_[+4(1.13e-05)]_8 chr5:88178989-88179009 2.72e-01 20 chr9:132805423-132805443 6.33e-01 20 chrX:73072529-73072549 9.39e-01 20 chr8:56792387-56792407 1.21e-01 20 chr12:117628249-11762826 7.24e-03 7_[+1(1.07e-05)]_5 chr12:131996038-13199605 6.18e-01 20 chr6:30923452-30923472 1.26e-01 20 chr17:3572142-3572162 5.81e-01 20 chr22:38006055-38006075 4.03e-01 20 chr4:6179695-6179715 3.94e-02 20 chr17:72744764-72744784 2.67e-01 20 chr11:118661981-11866200 1.83e-01 20 chr5:153570304-153570324 1.39e-01 20 chr3:69129484-69129504 3.77e-01 20 chr8:8243912-8243932 5.76e-01 20 chr20:37434256-37434276 9.49e-01 20 chr2:111878473-111878493 2.64e-01 20 chr20:57464234-57464254 8.43e-01 20 chr3:52312610-52312630 8.15e-01 20 chr19:51898800-51898820 3.72e-01 20 chr3:156392378-156392398 8.02e-01 20 chr3:50273631-50273651 2.01e-02 3_[+3(1.94e-05)]_9 chr10:120840318-12084033 9.87e-01 20 chr2:58135955-58135975 4.41e-01 20 chr5:94417319-94417339 4.23e-02 [+5(5.80e-05)]_12 chr8:41909496-41909516 7.76e-01 20 chr5:60628070-60628090 6.41e-01 20 chr3:180630471-180630491 4.66e-01 20 chr2:242295707-242295727 9.19e-01 20 chr19:5978092-5978112 5.74e-02 20 chrX:1571749-1571769 4.72e-01 20 chr4:2010668-2010688 6.70e-01 20 chr1:23495334-23495354 8.29e-01 20 chr2:98262526-98262546 7.84e-03 2_[+5(5.80e-05)]_10 chr17:16118860-16118880 9.74e-01 20 chr9:139702385-139702405 7.01e-01 20 chr8:103876370-103876390 7.98e-02 20 chr1:159895252-159895272 4.25e-01 20 chr2:86426627-86426647 3.15e-02 20 chr18:2972317-2972337 3.14e-02 20 chr20:48285202-48285222 5.70e-01 20 chr1:161129301-161129321 4.69e-02 9_[+2(1.10e-05)]_3 chr6:161695256-161695276 4.62e-01 20 chr11:129939774-12993979 1.04e-01 20 chr1:205600265-205600285 6.78e-01 20 chrX:48858613-48858633 3.82e-01 20 chr10:120938261-12093828 4.28e-01 20 chr7:43622727-43622747 1.27e-01 20 chr2:42360264-42360284 7.44e-01 20 chrX:102470047-102470067 2.83e-01 20 chr2:192542848-192542868 1.28e-04 12_[+3(1.94e-05)] chr5:134210012-134210032 9.92e-01 20 chr19:47291815-47291835 6.88e-01 20 chr5:172124552-172124572 2.01e-01 20 chr6:43543928-43543948 9.19e-02 20 chr4:6642404-6642424 6.79e-03 4_[+1(3.75e-05)]_8 chr9:72374837-72374857 2.56e-02 12_[+1(3.40e-05)] chr5:52856479-52856499 1.91e-03 10_[+2(1.10e-05)]_2 chr21:42798100-42798120 8.19e-01 20 chr3:194406627-194406647 8.76e-01 20 chr2:162016958-162016978 7.45e-01 20 chr10:74451917-74451937 4.26e-01 20 chr9:113018749-113018769 4.07e-01 20 chr2:128459098-128459118 1.94e-02 1_[+2(1.10e-05)]_11 chr12:12420329-12420349 2.32e-01 20 chr17:40021636-40021656 5.81e-01 20 chr21:30671244-30671264 6.31e-01 20 chr4:17579120-17579140 5.56e-01 20 chr17:37026298-37026318 5.46e-01 20 chr9:139305098-139305118 8.20e-01 20 chr1:52344349-52344369 3.03e-01 20 chr15:91209029-91209049 9.96e-02 20 chr15:75494274-75494294 2.63e-01 20 chr11:64864118-64864138 6.13e-01 20 chr14:23564280-23564300 2.50e-01 20 chr20:33543513-33543533 8.92e-01 20 chr2:55459811-55459831 1.46e-01 20 chr17:15903126-15903146 8.41e-03 6_[+4(4.97e-05)]_6 chr7:134896205-134896225 7.47e-01 20 chr1:162467645-162467665 3.25e-02 [+4(1.75e-05)]_12 chr12:95867901-95867921 5.90e-01 20 chr1:28157319-28157339 4.35e-01 20 chr18:56338727-56338747 1.78e-01 20 chr6:43445325-43445345 3.89e-03 4_[+2(1.10e-05)]_8 chr6:32657539-32657559 1.12e-02 7_[+2(6.37e-05)]_5 chr15:45018957-45018977 2.99e-01 20 chr6:57182444-57182464 2.53e-03 9_[+3(3.98e-05)]_3 chr2:74405581-74405601 2.31e-01 20 chr17:77813237-77813257 6.23e-01 20 chr15:52311438-52311458 1.84e-01 20 chr7:127032737-127032757 5.20e-01 20 chr6:114178526-114178546 8.97e-01 20 chr17:47288062-47288082 9.10e-02 9_[+3(9.99e-05)]_3 chr6:157008462-157008482 9.83e-01 20 chr17:28443871-28443891 1.20e-01 20 chr16:67840420-67840440 3.20e-02 20 chr9:86594525-86594545 9.76e-01 20 chr1:76190413-76190433 3.39e-01 20 chr8:74205795-74205815 5.59e-01 20 chr10:105128462-10512848 5.22e-01 20 chr12:6976682-6976702 5.83e-01 20 chr5:158527488-158527508 5.72e-01 20 chr7:116502685-116502705 7.84e-01 20 chr22:34316991-34317011 8.43e-02 20 chr3:185655240-185655260 1.62e-02 11_[+2(1.10e-05)]_1 chr12:123849363-12384938 8.74e-01 20 chr8:101734300-101734320 9.75e-01 20 chr1:12227035-12227055 6.05e-03 7_[+4(3.03e-05)]_5 chr5:151138100-151138120 6.70e-01 20 chr16:31885128-31885148 8.04e-01 20 chr19:1021091-1021111 9.14e-01 20 chr5:180688104-180688124 1.42e-02 20 chr11:82868176-82868196 4.91e-01 20 chr6:34393815-34393835 1.95e-01 20 chr1:43424520-43424540 2.01e-02 20 chr14:50528603-50528623 7.16e-01 20 chr20:2633272-2633292 4.77e-01 20 chr19:56135880-56135900 7.55e-01 20 chrX:77150926-77150946 1.66e-01 20 chr2:223725743-223725763 3.66e-02 9_[+3(6.91e-05)]_3 chr22:42394841-42394861 9.44e-01 20 chr3:185655765-185655785 7.33e-01 20 chr4:77870905-77870925 1.64e-02 20 chrX:48776286-48776306 6.79e-01 20 chr3:53916133-53916153 9.10e-01 20 chr1:113162470-113162490 5.63e-01 20 chr8:42196021-42196041 6.70e-01 20 chr4:122618082-122618102 8.60e-01 20 chr5:36876750-36876770 8.35e-02 20 chr5:179159817-179159837 6.60e-01 20 chr14:62162229-62162249 3.66e-02 20 chr5:177558025-177558045 7.45e-01 20 chr11:65627171-65627191 4.11e-01 20 chrX:118708514-118708534 9.45e-01 20 chrX:74376103-74376123 9.23e-01 20 chr5:137090044-137090064 3.08e-01 20 chr1:222791473-222791493 1.53e-01 20 chr20:278189-278209 9.56e-01 20 chr3:183966716-183966736 1.88e-03 7_[+1(1.07e-05)]_5 chr11:67205131-67205151 2.00e-01 20 chr6:391769-391789 6.47e-01 20 chr15:42783427-42783447 3.92e-01 20 chr5:131826422-131826442 4.65e-01 20 chr19:1174237-1174257 3.04e-01 20 chr9:32552357-32552377 3.28e-01 20 chr1:62901877-62901897 9.53e-01 20 chr2:62423266-62423286 4.98e-01 20 chr5:170814467-170814487 7.08e-01 20 chr15:69745151-69745171 2.98e-01 20 chr1:158979679-158979699 6.57e-03 3_[+5(1.67e-05)]_9 chr1:68150879-68150899 3.91e-03 3_[+3(3.98e-05)]_9 chr11:47447777-47447797 2.18e-03 [+1(1.07e-05)]_12 chr15:69110570-69110590 5.12e-02 9_[+2(3.32e-05)]_3 chr10:89623375-89623395 2.94e-01 20 chr10:131934660-13193468 4.02e-03 [+5(1.67e-05)]_12 chr1:100503680-100503700 2.57e-01 20 chrX:100646005-100646025 8.76e-01 20 chr21:19191664-19191684 7.86e-04 10_[+5(1.67e-05)]_2 chr5:72143958-72143978 1.91e-01 20 chr4:113207037-113207057 3.73e-01 20 chr4:3534101-3534121 7.44e-01 20 chr19:38865423-38865443 4.44e-03 4_[+2(1.10e-05)]_8 chr17:5185578-5185598 9.07e-01 20 chr6:89790457-89790477 4.14e-04 10_[+5(2.35e-05)]_2 chr5:176924584-176924604 1.20e-01 20 chr11:69490086-69490106 9.36e-01 20 chr1:110026613-110026633 6.03e-01 20 chr2:234475394-234475414 5.67e-03 2_[+1(3.40e-05)]_10 chr9:131419303-131419323 7.19e-01 20 chr1:160232216-160232236 1.81e-02 12_[+1(1.07e-05)] chr19:21512165-21512185 6.17e-01 20 chr17:25621138-25621158 1.13e-04 [+3(9.99e-05)]_2_[+4(3.03e-05)]_2 chr10:105127719-10512773 1.58e-01 20 chr1:185286360-185286380 4.18e-01 20 chr6:107150451-107150471 3.43e-01 20 chr1:24151878-24151898 2.95e-01 20 chr9:123605186-123605206 5.62e-01 20 chr6:42713751-42713771 1.19e-01 20 chr6:16129309-16129329 1.53e-02 20 chr4:57333803-57333823 6.61e-01 20 chr5:114880420-114880440 7.48e-01 20 chr16:15982404-15982424 7.84e-01 20 chr9:140024135-140024155 4.47e-01 20 chr9:131709968-131709988 9.35e-01 20 chr11:107328527-10732854 4.10e-04 5_[+5(5.80e-05)]_7 chr22:39795809-39795829 8.63e-01 20 chr11:67007482-67007502 4.28e-01 20 chr3:4535025-4535045 8.66e-02 20 chr7:141251144-141251164 2.47e-01 20 chr9:74980120-74980140 4.87e-01 20 chr1:100715360-100715380 2.17e-03 11_[+1(1.07e-05)]_1 chr3:186288075-186288095 4.53e-01 20 chr6:86388424-86388444 9.11e-01 20 chrX:134654577-134654597 3.23e-01 20 chr1:32801830-32801850 9.71e-01 20 chr10:72163886-72163906 3.42e-01 20 chr16:31724600-31724620 2.92e-02 3_[+3(6.91e-05)]_9 chr5:110848185-110848205 8.76e-01 20 chr2:197036281-197036301 6.44e-05 5_[+4(1.13e-05)]_7 chr17:62502367-62502387 4.74e-01 20 chr10:22725988-22726008 9.51e-01 20 chr4:100737981-100738001 1.82e-01 20 chr19:12845452-12845472 2.76e-01 20 chr3:67704982-67705002 2.62e-01 20 chr17:56416527-56416547 2.96e-02 20 chr6:139695777-139695797 2.13e-03 6_[+5(7.16e-05)]_6 chr3:44690156-44690176 3.69e-01 20 chr1:150336220-150336240 1.34e-01 20 chr1:155948315-155948335 5.57e-01 20 chr2:61108699-61108719 3.39e-01 20 chr2:69664541-69664561 4.02e-03 8_[+1(1.07e-05)]_4 chr12:111180679-11118069 9.94e-01 20 chr8:124286494-124286514 2.83e-03 20 chr17:46985748-46985768 9.41e-01 20 chr5:32585670-32585690 2.94e-02 20 chr20:44746943-44746963 3.16e-01 20 chr19:8509868-8509888 7.59e-03 11_[+2(2.28e-05)]_1 chr2:70121079-70121099 1.65e-03 12_[+5(1.67e-05)] chr5:90679120-90679140 2.76e-01 20 chr7:99613215-99613235 6.04e-03 11_[+5(7.16e-05)]_1 chr2:175462478-175462498 7.30e-02 20 chr1:36626687-36626707 5.08e-02 20 chr1:78443957-78443977 8.03e-01 20 chr4:2470858-2470878 7.97e-03 2_[+1(4.87e-05)]_10 chr2:25509018-25509038 3.00e-01 20 chr13:26796465-26796485 5.52e-01 20 chr3:9439125-9439145 9.85e-01 20 chr8:20054921-20054941 8.15e-01 20 chr19:55897310-55897330 4.03e-01 20 chr17:6544369-6544389 8.55e-03 20 chr11:2721215-2721235 1.65e-01 20 chr12:31479063-31479083 4.71e-04 10_[+4(4.97e-05)]_2 chr8:97247747-97247767 1.43e-03 6_[+1(1.69e-05)]_6 chr19:12163733-12163753 2.96e-01 20 chr2:67624497-67624517 2.65e-02 20 chr2:191745541-191745561 4.34e-01 20 chr15:93426020-93426040 8.62e-01 20 chr2:158300523-158300543 8.65e-02 20 chr18:52989055-52989075 2.15e-05 12_[+2(6.37e-05)] chr4:6675785-6675805 3.38e-01 20 chr6:134495992-134496012 6.52e-01 20 chr9:74526099-74526119 1.91e-01 20 chr18:11149542-11149562 4.31e-01 20 chr11:57103388-57103408 7.40e-01 20 chr7:44240559-44240579 4.25e-01 20 chr22:39101972-39101992 9.63e-03 2_[+3(1.94e-05)]_10 chr15:42264729-42264749 7.88e-01 20 chr22:19929339-19929359 3.10e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n05.farnam.hpc.yale.internal ********************************************************************************