******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/STAT3.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr8:48815073-48815093 1.0000 20 chr1:22118065-22118085 1.0000 20 chr12:11802614-11802634 1.0000 20 chr1:150534660-150534680 1.0000 20 chr4:175459543-175459563 1.0000 20 chr18:43554287-43554307 1.0000 20 chr4:87465569-87465589 1.0000 20 chr10:63752660-63752680 1.0000 20 chr10:12659378-12659398 1.0000 20 chr12:112568502-11256852 1.0000 20 chr19:6039342-6039362 1.0000 20 chr9:134604069-134604089 1.0000 20 chr1:82015397-82015417 1.0000 20 chr7:17545910-17545930 1.0000 20 chr8:126164646-126164666 1.0000 20 chr19:35838659-35838679 1.0000 20 chr5:75886074-75886094 1.0000 20 chr2:123497721-123497741 1.0000 20 chr18:3594041-3594061 1.0000 20 chr5:137271077-137271097 1.0000 20 chr12:10902949-10902969 1.0000 20 chr7:17441997-17442017 1.0000 20 chr20:48295707-48295727 1.0000 20 chr8:93523725-93523745 1.0000 20 chr6:109695170-109695190 1.0000 20 chr6:291309-291329 1.0000 20 chrX:55781458-55781478 1.0000 20 chr8:60060399-60060419 1.0000 20 chr6:106545849-106545869 1.0000 20 chr8:102778135-102778155 1.0000 20 chr19:17958859-17958879 1.0000 20 chr8:130560137-130560157 1.0000 20 chr18:77139224-77139244 1.0000 20 chr3:101546306-101546326 1.0000 20 chr5:96212153-96212173 1.0000 20 chr5:124257680-124257700 1.0000 20 chr4:113209025-113209045 1.0000 20 chr6:6798811-6798831 1.0000 20 chr7:37827036-37827056 1.0000 20 chr11:10783949-10783969 1.0000 20 chr11:65193830-65193850 1.0000 20 chr6:130070755-130070775 1.0000 20 chr2:25676274-25676294 1.0000 20 chr19:16453320-16453340 1.0000 20 chr1:27743147-27743167 1.0000 20 chr12:90344190-90344210 1.0000 20 chr3:111848148-111848168 1.0000 20 chr16:27386027-27386047 1.0000 20 chrX:130880690-130880710 1.0000 20 chr16:11075758-11075778 1.0000 20 chr12:12809032-12809052 1.0000 20 chr6:44837325-44837345 1.0000 20 chr3:101569553-101569573 1.0000 20 chr16:72624613-72624633 1.0000 20 chr1:59898436-59898456 1.0000 20 chr8:128218919-128218939 1.0000 20 chr5:156347474-156347494 1.0000 20 chr6:260046-260066 1.0000 20 chr5:149339101-149339121 1.0000 20 chr10:89898112-89898132 1.0000 20 chr5:32531886-32531906 1.0000 20 chr12:78851910-78851930 1.0000 20 chr6:4777687-4777707 1.0000 20 chr19:893329-893349 1.0000 20 chr20:52277016-52277036 1.0000 20 chr8:38220517-38220537 1.0000 20 chr17:25609008-25609028 1.0000 20 chr12:108729707-10872972 1.0000 20 chr6:138225867-138225887 1.0000 20 chr1:66861818-66861838 1.0000 20 chr11:102482220-10248224 1.0000 20 chrX:130956497-130956517 1.0000 20 chr8:39338302-39338322 1.0000 20 chr1:8537605-8537625 1.0000 20 chr4:74469267-74469287 1.0000 20 chr12:109058459-10905847 1.0000 20 chr1:159047096-159047116 1.0000 20 chr12:7261881-7261901 1.0000 20 chr8:70730560-70730580 1.0000 20 chr5:124256874-124256894 1.0000 20 chr11:82773006-82773026 1.0000 20 chr8:52438826-52438846 1.0000 20 chr7:134832775-134832795 1.0000 20 chr3:197461647-197461667 1.0000 20 chr9:112173510-112173530 1.0000 20 chr11:85827593-85827613 1.0000 20 chr5:158325333-158325353 1.0000 20 chr12:4324560-4324580 1.0000 20 chr20:49133327-49133347 1.0000 20 chr4:170019489-170019509 1.0000 20 chr4:17094952-17094972 1.0000 20 chr8:119520061-119520081 1.0000 20 chr8:61824946-61824966 1.0000 20 chr6:12119545-12119565 1.0000 20 chr1:205741887-205741907 1.0000 20 chr1:29253331-29253351 1.0000 20 chr6:135351478-135351498 1.0000 20 chr11:120271539-12027155 1.0000 20 chr5:75843401-75843421 1.0000 20 chr3:121774153-121774173 1.0000 20 chr6:51325026-51325046 1.0000 20 chr9:114660282-114660302 1.0000 20 chr13:114894705-11489472 1.0000 20 chr1:192523037-192523057 1.0000 20 chr18:12839835-12839855 1.0000 20 chr13:24540862-24540882 1.0000 20 chr16:4556579-4556599 1.0000 20 chr10:70825870-70825890 1.0000 20 chr8:82019604-82019624 1.0000 20 chr12:68845160-68845180 1.0000 20 chr4:39615174-39615194 1.0000 20 chr17:30842883-30842903 1.0000 20 chr12:20047942-20047962 1.0000 20 chr7:130645243-130645263 1.0000 20 chr4:36305580-36305600 1.0000 20 chr1:173380054-173380074 1.0000 20 chr8:37595330-37595350 1.0000 20 chr8:26528272-26528292 1.0000 20 chr9:114792529-114792549 1.0000 20 chr22:37935011-37935031 1.0000 20 chr4:144339209-144339229 1.0000 20 chr1:24718744-24718764 1.0000 20 chr14:93017960-93017980 1.0000 20 chr1:207510679-207510699 1.0000 20 chr17:7036247-7036267 1.0000 20 chr12:12163804-12163824 1.0000 20 chr17:76642193-76642213 1.0000 20 chr9:127632656-127632676 1.0000 20 chr3:113464143-113464163 1.0000 20 chr18:56325600-56325620 1.0000 20 chr12:102877158-10287717 1.0000 20 chr7:70163339-70163359 1.0000 20 chr12:13785009-13785029 1.0000 20 chr7:106065638-106065658 1.0000 20 chr4:57684362-57684382 1.0000 20 chrX:48796106-48796126 1.0000 20 chr10:97005282-97005302 1.0000 20 chr1:154847114-154847134 1.0000 20 chr11:109855751-10985577 1.0000 20 chr3:55709741-55709761 1.0000 20 chr1:197170873-197170893 1.0000 20 chr1:230259061-230259081 1.0000 20 chr3:192566577-192566597 1.0000 20 chr13:48878872-48878892 1.0000 20 chr8:137242416-137242436 1.0000 20 chr16:31712570-31712590 1.0000 20 chr2:25789978-25789998 1.0000 20 chrX:74142953-74142973 1.0000 20 chr1:235268598-235268618 1.0000 20 chr8:21817578-21817598 1.0000 20 chr12:27391456-27391476 1.0000 20 chr12:102330151-10233017 1.0000 20 chr3:170881125-170881145 1.0000 20 chr1:111505905-111505925 1.0000 20 chr4:10009466-10009486 1.0000 20 chr21:34807222-34807242 1.0000 20 chr11:26109316-26109336 1.0000 20 chr6:189593-189613 1.0000 20 chr16:15739762-15739782 1.0000 20 chr5:151042066-151042086 1.0000 20 chr9:134603427-134603447 1.0000 20 chr1:117057682-117057702 1.0000 20 chr17:26385039-26385059 1.0000 20 chr18:3153379-3153399 1.0000 20 chr9:112174359-112174379 1.0000 20 chr3:111846624-111846644 1.0000 20 chr5:95513216-95513236 1.0000 20 chr2:37851485-37851505 1.0000 20 chr6:157957182-157957202 1.0000 20 chr1:21348949-21348969 1.0000 20 chr6:137415741-137415761 1.0000 20 chr18:51749487-51749507 1.0000 20 chr10:22919725-22919745 1.0000 20 chr12:92797815-92797835 1.0000 20 chr5:17318913-17318933 1.0000 20 chr3:23695278-23695298 1.0000 20 chr13:70522351-70522371 1.0000 20 chr6:14110406-14110426 1.0000 20 chr9:5921081-5921101 1.0000 20 chr1:203269640-203269660 1.0000 20 chr8:105290932-105290952 1.0000 20 chrX:130950991-130951011 1.0000 20 chr8:119511614-119511634 1.0000 20 chr11:65188842-65188862 1.0000 20 chr14:73480980-73481000 1.0000 20 chr2:101011994-101012014 1.0000 20 chr15:38288151-38288171 1.0000 20 chr21:16135498-16135518 1.0000 20 chr21:34733254-34733274 1.0000 20 chr9:38319329-38319349 1.0000 20 chr16:27420070-27420090 1.0000 20 chr7:154720126-154720146 1.0000 20 chr8:19674813-19674833 1.0000 20 chr11:58341061-58341081 1.0000 20 chr12:50581124-50581144 1.0000 20 chr7:134681093-134681113 1.0000 20 chr2:7050069-7050089 1.0000 20 chr13:82067428-82067448 1.0000 20 chr9:126370620-126370640 1.0000 20 chr3:161488576-161488596 1.0000 20 chr7:139026680-139026700 1.0000 20 chr20:52240003-52240023 1.0000 20 chr10:98738696-98738716 1.0000 20 chr6:34607013-34607033 1.0000 20 chr1:192514335-192514355 1.0000 20 chr4:177045360-177045380 1.0000 20 chr13:99959678-99959698 1.0000 20 chr14:68147026-68147046 1.0000 20 chr14:68973642-68973662 1.0000 20 chr5:106724969-106724989 1.0000 20 chr12:118675085-11867510 1.0000 20 chr18:51790589-51790609 1.0000 20 chr1:192499567-192499587 1.0000 20 chr11:128283169-12828318 1.0000 20 chr13:33000326-33000346 1.0000 20 chr4:40194465-40194485 1.0000 20 chr17:60802282-60802302 1.0000 20 chr1:38941119-38941139 1.0000 20 chr6:106968994-106969014 1.0000 20 chr14:24630394-24630414 1.0000 20 chrX:10087554-10087574 1.0000 20 chr17:2394538-2394558 1.0000 20 chr5:169130335-169130355 1.0000 20 chr19:48707007-48707027 1.0000 20 chr1:169885023-169885043 1.0000 20 chr11:65756599-65756619 1.0000 20 chr9:37294252-37294272 1.0000 20 chr8:29087129-29087149 1.0000 20 chr9:37371724-37371744 1.0000 20 chr17:37926358-37926378 1.0000 20 chr1:158801111-158801131 1.0000 20 chr19:42829443-42829463 1.0000 20 chr14:61970223-61970243 1.0000 20 chr9:117372963-117372983 1.0000 20 chr6:143143672-143143692 1.0000 20 chr15:60800209-60800229 1.0000 20 chr7:128574710-128574730 1.0000 20 chr16:29831726-29831746 1.0000 20 chr10:112071284-11207130 1.0000 20 chr1:22106407-22106427 1.0000 20 chr3:189006387-189006407 1.0000 20 chr9:93970531-93970551 1.0000 20 chr6:28912392-28912412 1.0000 20 chr2:135381515-135381535 1.0000 20 chr2:20707020-20707040 1.0000 20 chr20:52486478-52486498 1.0000 20 chr5:94129268-94129288 1.0000 20 chr20:37521462-37521482 1.0000 20 chr5:66502957-66502977 1.0000 20 chr6:138976087-138976107 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_STAT3/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/STAT3.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.289 C 0.213 G 0.222 T 0.275 Background letter frequencies (from file dataset with add-one prior applied): A 0.289 C 0.213 G 0.222 T 0.275 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GGAAATGR MEME-1 width = 8 sites = 7 llr = 69 E-value = 2.3e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGAAATGR MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::aa9::4 pos.-specific C :::::::: probability G aa::1:a6 matrix T :::::a:: bits 2.2 ** * 2.0 ** * 1.8 **** ** 1.6 **** ** Relative 1.3 ******* Entropy 1.1 ******** (14.2 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGAAATGG consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAATGR MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:128574710-128574730 7 1.61e-05 cagatg ggaaatgg ggcttc chr12:27391456-27391476 3 1.61e-05 gg ggaaatgg gaattttctt chr1:159047096-159047116 3 1.61e-05 tg ggaaatgg gcgggcaatt chr14:68147026-68147046 10 3.71e-05 TATCTCTCT GGAAATGA CTC chr18:3594041-3594061 4 3.71e-05 CCT GGAAATGA TGTCAGACG chr7:17545910-17545930 3 3.71e-05 CT GGAAATGA TGGGTGGGGA chr11:10783949-10783969 3 4.95e-05 GA GGAAGTGG TCAGATGGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAATGR MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:128574710-128574730 1.6e-05 6_[+1]_6 chr12:27391456-27391476 1.6e-05 2_[+1]_10 chr1:159047096-159047116 1.6e-05 2_[+1]_10 chr14:68147026-68147046 3.7e-05 9_[+1]_3 chr18:3594041-3594061 3.7e-05 3_[+1]_9 chr7:17545910-17545930 3.7e-05 2_[+1]_10 chr11:10783949-10783969 4.9e-05 2_[+1]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAATGR MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGAAATGR width=8 seqs=7 chr7:128574710-128574730 ( 7) GGAAATGG 1 chr12:27391456-27391476 ( 3) GGAAATGG 1 chr1:159047096-159047116 ( 3) GGAAATGG 1 chr14:68147026-68147046 ( 10) GGAAATGA 1 chr18:3594041-3594061 ( 4) GGAAATGA 1 chr7:17545910-17545930 ( 3) GGAAATGA 1 chr11:10783949-10783969 ( 3) GGAAGTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAATGR MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.69928 E= 2.3e+002 -945 -945 217 -945 -945 -945 217 -945 179 -945 -945 -945 179 -945 -945 -945 157 -945 -64 -945 -945 -945 -945 186 -945 -945 217 -945 57 -945 136 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAATGR MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 2.3e+002 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.857143 0.000000 0.142857 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.428571 0.000000 0.571429 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAATGR MEME-1 regular expression -------------------------------------------------------------------------------- GGAAATG[GA] -------------------------------------------------------------------------------- Time 4.83 secs. ******************************************************************************** ******************************************************************************** MOTIF AAVCAGCT MEME-2 width = 8 sites = 9 llr = 80 E-value = 4.2e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAVCAGCT MEME-2 Description -------------------------------------------------------------------------------- Simplified A 9a4:8::: pos.-specific C 1:2a::a: probability G ::2::a:: matrix T ::1:2::a bits 2.2 * ** 2.0 * ** 1.8 * * *** 1.6 * * *** Relative 1.3 ** * *** Entropy 1.1 ** ***** (12.8 bits) 0.9 ** ***** 0.7 ** ***** 0.4 ** ***** 0.2 ******** 0.0 -------- Multilevel AAACAGCT consensus C T sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAVCAGCT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:21348949-21348969 7 1.93e-05 TTCAGA AAACAGCT GAGTCA chr18:12839835-12839855 11 1.93e-05 GTTTTCTGAG AAACAGCT CC chr6:4777687-4777707 9 3.36e-05 TGGGTTTA AACCAGCT TCAA chr3:23695278-23695298 12 4.84e-05 TGACTTTCCT AAGCAGCT T chr5:151042066-151042086 13 4.84e-05 GATTAATAAG AAGCAGCT chr1:192514335-192514355 5 6.68e-05 GAAG AAACTGCT GACAGGTG chr7:134832775-134832795 4 8.52e-05 TGA AATCAGCT GATAGTGAC chr12:12163804-12163824 12 9.87e-05 AAAATAAATA AACCTGCT G chr3:113464143-113464163 7 1.27e-04 CTGAAG CAACAGCT CCACCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAVCAGCT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:21348949-21348969 1.9e-05 6_[+2]_6 chr18:12839835-12839855 1.9e-05 10_[+2]_2 chr6:4777687-4777707 3.4e-05 8_[+2]_4 chr3:23695278-23695298 4.8e-05 11_[+2]_1 chr5:151042066-151042086 4.8e-05 12_[+2] chr1:192514335-192514355 6.7e-05 4_[+2]_8 chr7:134832775-134832795 8.5e-05 3_[+2]_9 chr12:12163804-12163824 9.9e-05 11_[+2]_1 chr3:113464143-113464163 0.00013 6_[+2]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAVCAGCT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAVCAGCT width=8 seqs=9 chr1:21348949-21348969 ( 7) AAACAGCT 1 chr18:12839835-12839855 ( 11) AAACAGCT 1 chr6:4777687-4777707 ( 9) AACCAGCT 1 chr3:23695278-23695298 ( 12) AAGCAGCT 1 chr5:151042066-151042086 ( 13) AAGCAGCT 1 chr1:192514335-192514355 ( 5) AAACTGCT 1 chr7:134832775-134832795 ( 4) AATCAGCT 1 chr12:12163804-12163824 ( 12) AACCTGCT 1 chr3:113464143-113464163 ( 7) CAACAGCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAVCAGCT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.62696 E= 4.2e+002 162 -94 -982 -982 179 -982 -982 -982 62 6 0 -131 -982 223 -982 -982 143 -982 -982 -31 -982 -982 217 -982 -982 223 -982 -982 -982 -982 -982 186 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAVCAGCT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 4.2e+002 0.888889 0.111111 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.444444 0.222222 0.222222 0.111111 0.000000 1.000000 0.000000 0.000000 0.777778 0.000000 0.000000 0.222222 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAVCAGCT MEME-2 regular expression -------------------------------------------------------------------------------- AA[ACG]C[AT]GCT -------------------------------------------------------------------------------- Time 8.01 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGBRVWG MEME-3 width = 8 sites = 18 llr = 136 E-value = 4.7e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGBRVWG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::746: pos.-specific C a::4:3:: probability G ::a3322a matrix T :a:3::3: bits 2.2 * * * 2.0 * * * 1.8 *** * 1.6 *** * Relative 1.3 *** * Entropy 1.1 *** * (10.9 bits) 0.9 *** * * 0.7 *** * * 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTGCAAAG consensus GGCT sequence T G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGBRVWG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:157957182-157957202 12 2.58e-05 TTTGTGATTT CTGCAAAG T chr6:138225867-138225887 12 5.27e-05 ACTAGATATG CTGGAAAG A chrX:48796106-48796126 7 8.39e-05 GATGAC CTGCAGAG GTAGGG chr8:119511614-119511634 5 1.42e-04 CTTA CTGTAAAG AATAAGAG chr9:134603427-134603447 12 1.42e-04 TTCATGCTAG CTGCACTG A chr1:173380054-173380074 9 1.42e-04 GGTAGCAG CTGCACTG GGGA chr12:11802614-11802634 4 1.42e-04 TTT CTGCACTG AAACTCTCA chrX:10087554-10087574 2 1.74e-04 A CTGGGAAG TATTTGCTTA chr7:17441997-17442017 8 1.74e-04 CTGGGTT CTGGGAAG TCAAC chr5:137271077-137271097 5 1.74e-04 GCTG CTGGGAAG GCCAAAAA chr8:119520061-119520081 7 2.28e-04 agatga ctgcaagg cttgag chr13:99959678-99959698 10 2.98e-04 TAAGAGAGG CTGTGCAG ACC chr1:24718744-24718764 9 2.98e-04 TGTCTAGG CTGCGATG TATA chr3:121774153-121774173 1 2.98e-04 . CTGTAGAG AAAAGAGGAA chr1:82015397-82015417 10 2.98e-04 TCACACAAC CTGTAGAG GGC chr1:154847114-154847134 2 3.60e-04 g ctgtactg cagctcttcc chr18:56325600-56325620 13 4.85e-04 tcaggatcac ctggaggg chr1:150534660-150534680 4 4.85e-04 GAG CTGGGCGG TGCCGGCTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGBRVWG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:157957182-157957202 2.6e-05 11_[+3]_1 chr6:138225867-138225887 5.3e-05 11_[+3]_1 chrX:48796106-48796126 8.4e-05 6_[+3]_6 chr8:119511614-119511634 0.00014 4_[+3]_8 chr9:134603427-134603447 0.00014 11_[+3]_1 chr1:173380054-173380074 0.00014 8_[+3]_4 chr12:11802614-11802634 0.00014 3_[+3]_9 chrX:10087554-10087574 0.00017 1_[+3]_11 chr7:17441997-17442017 0.00017 7_[+3]_5 chr5:137271077-137271097 0.00017 4_[+3]_8 chr8:119520061-119520081 0.00023 6_[+3]_6 chr13:99959678-99959698 0.0003 9_[+3]_3 chr1:24718744-24718764 0.0003 8_[+3]_4 chr3:121774153-121774173 0.0003 [+3]_12 chr1:82015397-82015417 0.0003 9_[+3]_3 chr1:154847114-154847134 0.00036 1_[+3]_11 chr18:56325600-56325620 0.00048 12_[+3] chr1:150534660-150534680 0.00048 3_[+3]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGBRVWG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGBRVWG width=8 seqs=18 chr6:157957182-157957202 ( 12) CTGCAAAG 1 chr6:138225867-138225887 ( 12) CTGGAAAG 1 chrX:48796106-48796126 ( 7) CTGCAGAG 1 chr8:119511614-119511634 ( 5) CTGTAAAG 1 chr9:134603427-134603447 ( 12) CTGCACTG 1 chr1:173380054-173380074 ( 9) CTGCACTG 1 chr12:11802614-11802634 ( 4) CTGCACTG 1 chrX:10087554-10087574 ( 2) CTGGGAAG 1 chr7:17441997-17442017 ( 8) CTGGGAAG 1 chr5:137271077-137271097 ( 5) CTGGGAAG 1 chr8:119520061-119520081 ( 7) CTGCAAGG 1 chr13:99959678-99959698 ( 10) CTGTGCAG 1 chr1:24718744-24718764 ( 9) CTGCGATG 1 chr3:121774153-121774173 ( 1) CTGTAGAG 1 chr1:82015397-82015417 ( 10) CTGTAGAG 1 chr1:154847114-154847134 ( 2) CTGTACTG 1 chr18:56325600-56325620 ( 13) CTGGAGGG 1 chr1:150534660-150534680 ( 4) CTGGGCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGBRVWG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.89767 E= 4.7e+002 -1081 223 -1081 -1081 -1081 -1081 -1081 186 -1081 -1081 217 -1081 -1081 87 58 1 120 -1081 58 -1081 62 65 0 -1081 94 -1081 -42 1 -1081 -1081 217 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGBRVWG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 4.7e+002 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.388889 0.333333 0.277778 0.666667 0.000000 0.333333 0.000000 0.444444 0.333333 0.222222 0.000000 0.555556 0.000000 0.166667 0.277778 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGBRVWG MEME-3 regular expression -------------------------------------------------------------------------------- CTG[CGT][AG][ACG][AT]G -------------------------------------------------------------------------------- Time 11.12 secs. ******************************************************************************** ******************************************************************************** MOTIF CCKTCCCC MEME-4 width = 8 sites = 2 llr = 23 E-value = 2.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCKTCCCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C aa::aaaa probability G ::5::::: matrix T ::5a:::: bits 2.2 ** **** 2.0 ** **** 1.8 ** ***** 1.6 ** ***** Relative 1.3 ** ***** Entropy 1.1 ******** (16.3 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCGTCCCC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCKTCCCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:139026680-139026700 1 5.70e-06 . CCGTCCCC TAGAAAAGTT chr17:60802282-60802302 3 1.28e-05 TT CCTTCCCC ACCTACCTGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCKTCCCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:139026680-139026700 5.7e-06 [+4]_12 chr17:60802282-60802302 1.3e-05 2_[+4]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCKTCCCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCKTCCCC width=8 seqs=2 chr7:139026680-139026700 ( 1) CCGTCCCC 1 chr17:60802282-60802302 ( 3) CCTTCCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCKTCCCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.6653 E= 2.3e+003 -765 223 -765 -765 -765 223 -765 -765 -765 -765 116 86 -765 -765 -765 186 -765 223 -765 -765 -765 223 -765 -765 -765 223 -765 -765 -765 223 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCKTCCCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.3e+003 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCKTCCCC MEME-4 regular expression -------------------------------------------------------------------------------- CC[GT]TCCCC -------------------------------------------------------------------------------- Time 13.24 secs. ******************************************************************************** ******************************************************************************** MOTIF GTCCCCTT MEME-5 width = 8 sites = 2 llr = 23 E-value = 3.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTCCCCTT MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::aaaa:: probability G a::::::: matrix T :a::::aa bits 2.2 * **** 2.0 * **** 1.8 ******** 1.6 ******** Relative 1.3 ******** Entropy 1.1 ******** (16.7 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTCCCCTT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCCCCTT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:189006387-189006407 11 9.50e-06 GCTTTCCAAT GTCCCCTT TT chr16:31712570-31712590 9 9.50e-06 attacgta gtcccctt attt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCCCCTT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:189006387-189006407 9.5e-06 10_[+5]_2 chr16:31712570-31712590 9.5e-06 8_[+5]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCCCCTT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTCCCCTT width=8 seqs=2 chr3:189006387-189006407 ( 11) GTCCCCTT 1 chr16:31712570-31712590 ( 9) GTCCCCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCCCCTT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.6653 E= 3.9e+003 -765 -765 216 -765 -765 -765 -765 186 -765 223 -765 -765 -765 223 -765 -765 -765 223 -765 -765 -765 223 -765 -765 -765 -765 -765 186 -765 -765 -765 186 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCCCCTT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.9e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCCCCTT MEME-5 regular expression -------------------------------------------------------------------------------- GTCCCCTT -------------------------------------------------------------------------------- Time 14.02 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:48815073-48815093 3.79e-02 20 chr1:22118065-22118085 9.60e-01 20 chr12:11802614-11802634 7.16e-02 20 chr1:150534660-150534680 5.53e-02 20 chr4:175459543-175459563 1.99e-01 20 chr18:43554287-43554307 7.75e-01 20 chr4:87465569-87465589 9.77e-01 20 chr10:63752660-63752680 7.92e-01 20 chr10:12659378-12659398 5.56e-01 20 chr12:112568502-11256852 8.52e-01 20 chr19:6039342-6039362 9.56e-01 20 chr9:134604069-134604089 1.77e-01 20 chr1:82015397-82015417 7.28e-02 20 chr7:17545910-17545930 9.86e-03 2_[+1(3.71e-05)]_10 chr8:126164646-126164666 3.57e-01 20 chr19:35838659-35838679 7.45e-01 20 chr5:75886074-75886094 4.18e-01 20 chr2:123497721-123497741 2.13e-01 20 chr18:3594041-3594061 9.48e-03 3_[+1(3.71e-05)]_9 chr5:137271077-137271097 8.35e-02 20 chr12:10902949-10902969 3.07e-01 20 chr7:17441997-17442017 2.13e-02 20 chr20:48295707-48295727 3.64e-02 20 chr8:93523725-93523745 5.27e-01 20 chr6:109695170-109695190 9.76e-01 20 chr6:291309-291329 4.21e-01 20 chrX:55781458-55781478 7.94e-01 20 chr8:60060399-60060419 8.26e-01 20 chr6:106545849-106545869 9.66e-02 20 chr8:102778135-102778155 7.39e-01 20 chr19:17958859-17958879 7.03e-01 20 chr8:130560137-130560157 7.40e-01 20 chr18:77139224-77139244 5.84e-02 20 chr3:101546306-101546326 8.55e-01 20 chr5:96212153-96212173 9.99e-01 20 chr5:124257680-124257700 8.77e-01 20 chr4:113209025-113209045 1.01e-01 20 chr6:6798811-6798831 2.88e-02 20 chr7:37827036-37827056 6.66e-01 20 chr11:10783949-10783969 2.18e-02 2_[+1(4.95e-05)]_10 chr11:65193830-65193850 3.11e-01 20 chr6:130070755-130070775 3.40e-01 20 chr2:25676274-25676294 1.33e-01 20 chr19:16453320-16453340 6.28e-01 20 chr1:27743147-27743167 2.76e-01 20 chr12:90344190-90344210 4.55e-01 20 chr3:111848148-111848168 9.02e-01 20 chr16:27386027-27386047 6.84e-01 20 chrX:130880690-130880710 7.62e-01 20 chr16:11075758-11075778 6.03e-01 20 chr12:12809032-12809052 6.44e-01 20 chr6:44837325-44837345 8.41e-01 20 chr3:101569553-101569573 2.08e-01 20 chr16:72624613-72624633 7.08e-01 20 chr1:59898436-59898456 7.38e-01 20 chr8:128218919-128218939 9.55e-01 20 chr5:156347474-156347494 6.06e-01 20 chr6:260046-260066 9.79e-01 20 chr5:149339101-149339121 6.94e-01 20 chr10:89898112-89898132 7.42e-01 20 chr5:32531886-32531906 1.68e-01 20 chr12:78851910-78851930 7.50e-01 20 chr6:4777687-4777707 4.07e-02 8_[+2(3.36e-05)]_4 chr19:893329-893349 5.98e-01 20 chr20:52277016-52277036 4.76e-01 20 chr8:38220517-38220537 6.44e-01 20 chr17:25609008-25609028 9.85e-01 20 chr12:108729707-10872972 8.07e-01 20 chr6:138225867-138225887 1.66e-02 11_[+3(5.27e-05)]_1 chr1:66861818-66861838 5.64e-01 20 chr11:102482220-10248224 6.71e-01 20 chrX:130956497-130956517 2.58e-01 20 chr8:39338302-39338322 4.00e-01 20 chr1:8537605-8537625 9.07e-01 20 chr4:74469267-74469287 6.39e-01 20 chr12:109058459-10905847 2.82e-01 20 chr1:159047096-159047116 9.95e-03 2_[+1(1.61e-05)]_10 chr12:7261881-7261901 3.65e-03 20 chr8:70730560-70730580 3.54e-01 20 chr5:124256874-124256894 7.11e-01 20 chr11:82773006-82773026 2.12e-01 20 chr8:52438826-52438846 7.09e-01 20 chr7:134832775-134832795 2.94e-02 3_[+2(8.52e-05)]_9 chr3:197461647-197461667 1.82e-01 20 chr9:112173510-112173530 6.41e-01 20 chr11:85827593-85827613 2.46e-01 20 chr5:158325333-158325353 7.51e-01 20 chr12:4324560-4324580 4.62e-01 20 chr20:49133327-49133347 7.26e-01 20 chr4:170019489-170019509 9.80e-01 20 chr4:17094952-17094972 6.88e-01 20 chr8:119520061-119520081 1.70e-01 20 chr8:61824946-61824966 8.45e-01 20 chr6:12119545-12119565 4.28e-01 20 chr1:205741887-205741907 1.27e-01 20 chr1:29253331-29253351 9.08e-01 20 chr6:135351478-135351498 9.10e-01 20 chr11:120271539-12027155 7.21e-01 20 chr5:75843401-75843421 3.15e-01 20 chr3:121774153-121774173 6.88e-02 20 chr6:51325026-51325046 5.03e-01 20 chr9:114660282-114660302 3.02e-01 20 chr13:114894705-11489472 4.25e-01 20 chr1:192523037-192523057 8.49e-01 20 chr18:12839835-12839855 5.35e-03 10_[+2(1.93e-05)]_2 chr13:24540862-24540882 5.98e-01 20 chr16:4556579-4556599 3.91e-01 20 chr10:70825870-70825890 4.69e-01 20 chr8:82019604-82019624 9.94e-01 20 chr12:68845160-68845180 3.90e-01 20 chr4:39615174-39615194 9.41e-02 20 chr17:30842883-30842903 9.05e-01 20 chr12:20047942-20047962 9.91e-01 20 chr7:130645243-130645263 4.84e-01 20 chr4:36305580-36305600 2.29e-01 20 chr1:173380054-173380074 2.99e-03 20 chr8:37595330-37595350 3.23e-01 20 chr8:26528272-26528292 1.13e-01 20 chr9:114792529-114792549 5.60e-02 20 chr22:37935011-37935031 8.54e-02 20 chr4:144339209-144339229 8.08e-02 20 chr1:24718744-24718764 9.43e-02 20 chr14:93017960-93017980 8.58e-01 20 chr1:207510679-207510699 2.28e-01 20 chr17:7036247-7036267 2.17e-01 20 chr12:12163804-12163824 1.24e-01 11_[+2(9.87e-05)]_1 chr17:76642193-76642213 1.66e-02 20 chr9:127632656-127632676 8.55e-01 20 chr3:113464143-113464163 1.29e-02 20 chr18:56325600-56325620 3.20e-02 20 chr12:102877158-10287717 7.50e-01 20 chr7:70163339-70163359 1.75e-01 20 chr12:13785009-13785029 8.25e-01 20 chr7:106065638-106065658 2.87e-01 20 chr4:57684362-57684382 2.93e-01 20 chrX:48796106-48796126 2.72e-02 6_[+3(8.39e-05)]_6 chr10:97005282-97005302 8.71e-01 20 chr1:154847114-154847134 2.18e-02 20 chr11:109855751-10985577 5.33e-01 20 chr3:55709741-55709761 1.36e-01 20 chr1:197170873-197170893 4.23e-01 20 chr1:230259061-230259081 6.81e-01 20 chr3:192566577-192566597 1.87e-01 20 chr13:48878872-48878892 1.19e-01 20 chr8:137242416-137242436 5.02e-01 20 chr16:31712570-31712590 2.94e-03 8_[+5(9.50e-06)]_4 chr2:25789978-25789998 9.01e-01 20 chrX:74142953-74142973 4.29e-01 20 chr1:235268598-235268618 7.27e-01 20 chr8:21817578-21817598 7.93e-01 20 chr12:27391456-27391476 1.61e-02 2_[+1(1.61e-05)]_10 chr12:102330151-10233017 7.78e-01 20 chr3:170881125-170881145 2.50e-01 20 chr1:111505905-111505925 7.47e-01 20 chr4:10009466-10009486 7.85e-01 20 chr21:34807222-34807242 6.86e-01 20 chr11:26109316-26109336 6.82e-01 20 chr6:189593-189613 7.20e-01 20 chr16:15739762-15739782 8.56e-01 20 chr5:151042066-151042086 8.37e-02 12_[+2(4.84e-05)] chr9:134603427-134603447 3.13e-02 20 chr1:117057682-117057702 1.23e-01 20 chr17:26385039-26385059 4.90e-01 20 chr18:3153379-3153399 7.06e-01 20 chr9:112174359-112174379 2.42e-01 20 chr3:111846624-111846644 8.58e-01 20 chr5:95513216-95513236 7.00e-01 20 chr2:37851485-37851505 6.29e-01 20 chr6:157957182-157957202 5.58e-02 11_[+3(2.58e-05)]_1 chr1:21348949-21348969 1.19e-02 6_[+2(1.93e-05)]_6 chr6:137415741-137415761 8.70e-01 20 chr18:51749487-51749507 6.42e-01 20 chr10:22919725-22919745 5.26e-01 20 chr12:92797815-92797835 1.88e-01 20 chr5:17318913-17318933 3.17e-01 20 chr3:23695278-23695298 8.95e-03 11_[+2(4.84e-05)]_1 chr13:70522351-70522371 8.65e-01 20 chr6:14110406-14110426 7.31e-01 20 chr9:5921081-5921101 6.80e-01 20 chr1:203269640-203269660 1.38e-01 20 chr8:105290932-105290952 5.59e-01 20 chrX:130950991-130951011 8.19e-01 20 chr8:119511614-119511634 1.27e-01 20 chr11:65188842-65188862 4.64e-02 20 chr14:73480980-73481000 6.32e-02 20 chr2:101011994-101012014 2.43e-01 20 chr15:38288151-38288171 1.85e-01 20 chr21:16135498-16135518 6.32e-01 20 chr21:34733254-34733274 5.28e-01 20 chr9:38319329-38319349 6.39e-01 20 chr16:27420070-27420090 8.92e-01 20 chr7:154720126-154720146 4.89e-01 20 chr8:19674813-19674833 2.71e-01 20 chr11:58341061-58341081 6.94e-01 20 chr12:50581124-50581144 4.58e-01 20 chr7:134681093-134681113 2.89e-01 20 chr2:7050069-7050089 1.86e-01 20 chr13:82067428-82067448 9.97e-01 20 chr9:126370620-126370640 2.61e-01 20 chr3:161488576-161488596 7.30e-01 20 chr7:139026680-139026700 1.82e-05 [+4(5.70e-06)]_12 chr20:52240003-52240023 9.65e-01 20 chr10:98738696-98738716 7.47e-01 20 chr6:34607013-34607033 8.93e-01 20 chr1:192514335-192514355 1.70e-02 4_[+2(6.68e-05)]_8 chr4:177045360-177045380 8.65e-01 20 chr13:99959678-99959698 1.31e-01 20 chr14:68147026-68147046 5.01e-03 9_[+1(3.71e-05)]_3 chr14:68973642-68973662 2.34e-01 20 chr5:106724969-106724989 9.20e-01 20 chr12:118675085-11867510 9.11e-01 20 chr18:51790589-51790609 3.08e-01 20 chr1:192499567-192499587 3.56e-01 20 chr11:128283169-12828318 5.10e-01 20 chr13:33000326-33000346 3.00e-01 20 chr4:40194465-40194485 2.88e-01 20 chr17:60802282-60802302 3.30e-03 2_[+4(1.28e-05)]_10 chr1:38941119-38941139 2.36e-01 20 chr6:106968994-106969014 6.29e-02 20 chr14:24630394-24630414 2.65e-01 20 chrX:10087554-10087574 3.06e-02 20 chr17:2394538-2394558 1.00e+00 20 chr5:169130335-169130355 6.52e-01 20 chr19:48707007-48707027 1.33e-01 20 chr1:169885023-169885043 9.51e-01 20 chr11:65756599-65756619 5.25e-02 20 chr9:37294252-37294272 4.67e-01 20 chr8:29087129-29087149 6.99e-02 20 chr9:37371724-37371744 7.37e-02 20 chr17:37926358-37926378 9.57e-01 20 chr1:158801111-158801131 8.02e-01 20 chr19:42829443-42829463 1.19e-01 20 chr14:61970223-61970243 2.57e-01 20 chr9:117372963-117372983 8.41e-01 20 chr6:143143672-143143692 9.63e-01 20 chr15:60800209-60800229 3.44e-02 20 chr7:128574710-128574730 2.48e-02 6_[+1(1.61e-05)]_6 chr16:29831726-29831746 2.39e-02 20 chr10:112071284-11207130 9.15e-01 20 chr1:22106407-22106427 4.45e-01 20 chr3:189006387-189006407 2.01e-03 10_[+5(9.50e-06)]_2 chr9:93970531-93970551 1.29e-01 20 chr6:28912392-28912412 6.27e-01 20 chr2:135381515-135381535 9.94e-01 20 chr2:20707020-20707040 2.99e-01 20 chr20:52486478-52486498 5.78e-01 20 chr5:94129268-94129288 4.49e-01 20 chr20:37521462-37521482 8.78e-01 20 chr5:66502957-66502977 7.56e-01 20 chr6:138976087-138976107 8.30e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n10.farnam.hpc.yale.internal ********************************************************************************