******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/SRF.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr19:941008-941028 1.0000 20 chr5:92906517-92906537 1.0000 20 chr15:31637868-31637888 1.0000 20 chr19:17356840-17356860 1.0000 20 chr7:150942668-150942688 1.0000 20 chr4:95373982-95374002 1.0000 20 chr16:23710594-23710614 1.0000 20 chr7:143078332-143078352 1.0000 20 chr16:48200079-48200099 1.0000 20 chr10:71079174-71079194 1.0000 20 chr9:36136648-36136668 1.0000 20 chr3:139174883-139174903 1.0000 20 chr9:136306193-136306213 1.0000 20 chr3:9821977-9821997 1.0000 20 chr21:44011121-44011141 1.0000 20 chr7:43690849-43690869 1.0000 20 chr22:26975441-26975461 1.0000 20 chr5:169816429-169816449 1.0000 20 chr1:151446033-151446053 1.0000 20 chr6:152956113-152956133 1.0000 20 chr19:54618015-54618035 1.0000 20 chr20:18782739-18782759 1.0000 20 chr12:94956688-94956708 1.0000 20 chr2:68412832-68412852 1.0000 20 chr10:72345129-72345149 1.0000 20 chr19:5271318-5271338 1.0000 20 chr1:156631266-156631286 1.0000 20 chr8:67687348-67687368 1.0000 20 chr10:22609625-22609645 1.0000 20 chr8:144614429-144614449 1.0000 20 chr17:48726711-48726731 1.0000 20 chr19:39174390-39174410 1.0000 20 chr6:12093188-12093208 1.0000 20 chr6:43701869-43701889 1.0000 20 chr2:178410069-178410089 1.0000 20 chr19:44036829-44036849 1.0000 20 chr3:53222495-53222515 1.0000 20 chr20:1064218-1064238 1.0000 20 chr4:38671044-38671064 1.0000 20 chr3:47325321-47325341 1.0000 20 chr22:40811797-40811817 1.0000 20 chr9:136036525-136036545 1.0000 20 chr11:12211261-12211281 1.0000 20 chr6:111187959-111187979 1.0000 20 chr13:45928178-45928198 1.0000 20 chr1:51766939-51766959 1.0000 20 chr16:85250736-85250756 1.0000 20 chr10:73291462-73291482 1.0000 20 chr6:30239997-30240017 1.0000 20 chr9:79249471-79249491 1.0000 20 chr1:154307637-154307657 1.0000 20 chr3:107629982-107630002 1.0000 20 chr20:45180622-45180642 1.0000 20 chr10:110822365-11082238 1.0000 20 chr4:100998092-100998112 1.0000 20 chr11:121289509-12128952 1.0000 20 chr4:40240662-40240682 1.0000 20 chr7:44921353-44921373 1.0000 20 chr5:41874798-41874818 1.0000 20 chr22:34238613-34238633 1.0000 20 chr8:42270512-42270532 1.0000 20 chr4:146851854-146851874 1.0000 20 chr2:191142503-191142523 1.0000 20 chr3:119528662-119528682 1.0000 20 chr15:76632965-76632985 1.0000 20 chr19:18058244-18058264 1.0000 20 chr17:36193027-36193047 1.0000 20 chr18:43647655-43647675 1.0000 20 chr10:100248964-10024898 1.0000 20 chr22:36775791-36775811 1.0000 20 chr17:27949575-27949595 1.0000 20 chr19:48947703-48947723 1.0000 20 chr5:133891631-133891651 1.0000 20 chr10:33243172-33243192 1.0000 20 chr14:91797378-91797398 1.0000 20 chr2:13333376-13333396 1.0000 20 chr9:34994041-34994061 1.0000 20 chr11:66085506-66085526 1.0000 20 chr9:37407691-37407711 1.0000 20 chr3:189290963-189290983 1.0000 20 chr2:74060251-74060271 1.0000 20 chr19:1026512-1026532 1.0000 20 chr2:10975502-10975522 1.0000 20 chr17:32569778-32569798 1.0000 20 chr10:124895478-12489549 1.0000 20 chr14:50325239-50325259 1.0000 20 chr12:4333862-4333882 1.0000 20 chr6:43142030-43142050 1.0000 20 chr21:43882899-43882919 1.0000 20 chr15:52027564-52027584 1.0000 20 chr11:94809913-94809933 1.0000 20 chr1:1333726-1333746 1.0000 20 chr5:137827833-137827853 1.0000 20 chr1:41962029-41962049 1.0000 20 chr3:178231501-178231521 1.0000 20 chr2:37801332-37801352 1.0000 20 chr9:126691801-126691821 1.0000 20 chr14:75642849-75642869 1.0000 20 chr5:114641922-114641942 1.0000 20 chr5:126059492-126059512 1.0000 20 chr1:86042728-86042748 1.0000 20 chr14:40150123-40150143 1.0000 20 chr15:37321023-37321043 1.0000 20 chr16:1143574-1143594 1.0000 20 chr1:20511948-20511968 1.0000 20 chr3:149376368-149376388 1.0000 20 chr1:145477531-145477551 1.0000 20 chr14:64687464-64687484 1.0000 20 chr2:106015553-106015573 1.0000 20 chr3:99595064-99595084 1.0000 20 chr3:187334252-187334272 1.0000 20 chr11:7517549-7517569 1.0000 20 chrX:39350929-39350949 1.0000 20 chr1:11863308-11863328 1.0000 20 chr12:833782-833802 1.0000 20 chr1:47082635-47082655 1.0000 20 chr10:62477797-62477817 1.0000 20 chr2:73520800-73520820 1.0000 20 chr12:8635886-8635906 1.0000 20 chr11:94610054-94610074 1.0000 20 chr15:52554215-52554235 1.0000 20 chr2:7165395-7165415 1.0000 20 chr17:4847571-4847591 1.0000 20 chr17:77784045-77784065 1.0000 20 chr6:158402575-158402595 1.0000 20 chr1:156634880-156634900 1.0000 20 chr14:22940725-22940745 1.0000 20 chr3:55762991-55763011 1.0000 20 chr3:47418873-47418893 1.0000 20 chr1:66782632-66782652 1.0000 20 chr6:28129531-28129551 1.0000 20 chr11:57282341-57282361 1.0000 20 chr15:90642556-90642576 1.0000 20 chr12:109085480-10908550 1.0000 20 chr16:81764539-81764559 1.0000 20 chr6:7146868-7146888 1.0000 20 chr15:90931286-90931306 1.0000 20 chr16:53469086-53469106 1.0000 20 chr14:64472750-64472770 1.0000 20 chr7:50479213-50479233 1.0000 20 chr7:49852338-49852358 1.0000 20 chr2:223726379-223726399 1.0000 20 chr2:198173144-198173164 1.0000 20 chr16:22202292-22202312 1.0000 20 chr1:54959398-54959418 1.0000 20 chr19:58873334-58873354 1.0000 20 chr7:4784843-4784863 1.0000 20 chr16:46983412-46983432 1.0000 20 chr11:60532608-60532628 1.0000 20 chr1:11994627-11994647 1.0000 20 chr2:86669949-86669969 1.0000 20 chr1:233857210-233857230 1.0000 20 chr1:90013523-90013543 1.0000 20 chrX:13505602-13505622 1.0000 20 chr4:3048049-3048069 1.0000 20 chr1:85742500-85742520 1.0000 20 chr4:88480870-88480890 1.0000 20 chr15:75185458-75185478 1.0000 20 chr3:37847831-37847851 1.0000 20 chr2:64523138-64523158 1.0000 20 chr5:158103772-158103792 1.0000 20 chr14:75760998-75761018 1.0000 20 chr3:186830923-186830943 1.0000 20 chr19:39165690-39165710 1.0000 20 chr1:154976627-154976647 1.0000 20 chr6:150326439-150326459 1.0000 20 chr19:39896189-39896209 1.0000 20 chr17:73402252-73402272 1.0000 20 chr2:68979050-68979070 1.0000 20 chr8:9577989-9578009 1.0000 20 chr4:153355336-153355356 1.0000 20 chr7:107531127-107531147 1.0000 20 chr8:22552896-22552916 1.0000 20 chr13:47183328-47183348 1.0000 20 chr2:69135690-69135710 1.0000 20 chr1:95743894-95743914 1.0000 20 chr16:50758441-50758461 1.0000 20 chr6:107450735-107450755 1.0000 20 chr2:219262841-219262861 1.0000 20 chr1:19276731-19276751 1.0000 20 chr18:42304346-42304366 1.0000 20 chr20:57033598-57033618 1.0000 20 chr15:78819856-78819876 1.0000 20 chr12:91247967-91247987 1.0000 20 chr11:73038648-73038668 1.0000 20 chr13:21347410-21347430 1.0000 20 chr3:143690284-143690304 1.0000 20 chr10:6186813-6186833 1.0000 20 chr11:60145308-60145328 1.0000 20 chr1:39492448-39492468 1.0000 20 chr21:34753093-34753113 1.0000 20 chr19:11650736-11650756 1.0000 20 chrX:133503717-133503737 1.0000 20 chr1:209791242-209791262 1.0000 20 chr9:117196150-117196170 1.0000 20 chr18:9711797-9711817 1.0000 20 chr19:32897032-32897052 1.0000 20 chr7:38895647-38895667 1.0000 20 chr15:43415536-43415556 1.0000 20 chr6:33029934-33029954 1.0000 20 chr19:57792674-57792694 1.0000 20 chr8:22551056-22551076 1.0000 20 chr12:50616483-50616503 1.0000 20 chr17:5124429-5124449 1.0000 20 chr10:99401178-99401198 1.0000 20 chr8:81068550-81068570 1.0000 20 chr11:116603669-11660368 1.0000 20 chr2:28615339-28615359 1.0000 20 chr1:95179443-95179463 1.0000 20 chr7:150434457-150434477 1.0000 20 chr21:46574772-46574792 1.0000 20 chr4:6202072-6202092 1.0000 20 chrX:153744829-153744849 1.0000 20 chr10:13728529-13728549 1.0000 20 chr8:81947242-81947262 1.0000 20 chr2:232531713-232531733 1.0000 20 chr3:171180203-171180223 1.0000 20 chr7:155539149-155539169 1.0000 20 chr10:16478971-16478991 1.0000 20 chr2:206564817-206564837 1.0000 20 chr1:235097638-235097658 1.0000 20 chr1:19812144-19812164 1.0000 20 chr1:110366044-110366064 1.0000 20 chr3:189343515-189343535 1.0000 20 chr2:27294561-27294581 1.0000 20 chr21:40203701-40203721 1.0000 20 chr22:36851283-36851303 1.0000 20 chr10:97201132-97201152 1.0000 20 chr2:101434990-101435010 1.0000 20 chr17:41132170-41132190 1.0000 20 chr5:149555313-149555333 1.0000 20 chr10:102821210-10282123 1.0000 20 chr15:96873821-96873841 1.0000 20 chr7:92214471-92214491 1.0000 20 chr1:185663303-185663323 1.0000 20 chr19:30078676-30078696 1.0000 20 chr12:113883768-11388378 1.0000 20 chr4:47467246-47467266 1.0000 20 chr19:48936764-48936784 1.0000 20 chr7:151466391-151466411 1.0000 20 chr11:65668104-65668124 1.0000 20 chr6:139350783-139350803 1.0000 20 chr11:118191455-11819147 1.0000 20 chr14:34801552-34801572 1.0000 20 chr5:75395189-75395209 1.0000 20 chr11:77161448-77161468 1.0000 20 chr10:71924119-71924139 1.0000 20 chr7:139477912-139477932 1.0000 20 chr12:53301688-53301708 1.0000 20 chr2:46116409-46116429 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_SRF/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/SRF.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.226 C 0.268 G 0.276 T 0.231 Background letter frequencies (from file dataset with add-one prior applied): A 0.226 C 0.268 G 0.276 T 0.231 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCCWTATA MEME-1 width = 8 sites = 42 llr = 321 E-value = 1.8e-028 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCWTATA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1::519:7 pos.-specific C 2aa:::1: probability G 5::::1:: matrix T 1::59:93 bits 2.1 1.9 * 1.7 ** * 1.5 ** *** Relative 1.3 ** **** Entropy 1.1 ******* (11.0 bits) 0.9 ******* 0.6 ******* 0.4 ******* 0.2 ******** 0.0 -------- Multilevel GCCTTATA consensus C A T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCWTATA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:118191455-11819147 13 1.25e-05 ttcagcattt gccttata chr15:96873821-96873841 13 1.25e-05 CCCGGCTGCT GCCTTATA chr22:36851283-36851303 12 1.25e-05 CGCGACGCTC GCCTTATA T chr6:33029934-33029954 13 1.25e-05 ctcagtgttt gccttata chr10:62477797-62477817 1 1.25e-05 . gccttata tggacattgt chr12:833782-833802 10 1.25e-05 TTTCTCCTT GCCTTATA TGG chr3:99595064-99595084 3 1.25e-05 CT GCCTTATA AGGCGCTCCG chr19:1026512-1026532 5 1.25e-05 CCAG GCCTTATA AGGACATT chr3:186830923-186830943 11 2.47e-05 GAGGAAACAT GCCATATA AG chr4:88480870-88480890 12 2.47e-05 GGAAACAAAT GCCATATA A chr20:45180622-45180642 2 3.68e-05 T CCCTTATA AGGACATGTT chr4:3048049-3048069 7 4.96e-05 gcattt gccttatt tggaca chr11:60532608-60532628 8 4.96e-05 ggcattt gccttatt tgggc chr17:48726711-48726731 2 4.96e-05 t gccttatt tgggcatggt chr4:95373982-95374002 6 4.96e-05 CGGTA GCCTTATT TGGCCAA chr2:46116409-46116429 13 7.16e-05 AGCCGACTCC ACCTTATA chr1:235097638-235097658 8 7.16e-05 ACACATG CCCATATA TAGGC chr6:158402575-158402595 10 7.16e-05 GCCGGGCTG CCCATATA AGG chr5:133891631-133891651 6 7.16e-05 CCTCG ACCTTATA TAGGCCT chr5:126059492-126059512 5 8.41e-05 gttt gccatatt tgggcata chr8:67687348-67687368 11 8.41e-05 GGCTGACCGA GCCATATT CG chr2:106015553-106015573 4 1.05e-04 TTG ACCATATA AGGAGATGC chr2:13333376-13333396 4 1.15e-04 atg tccatata aggcaaatg chr11:116603669-11660368 12 1.67e-04 CATCCAGCTT GCCTTGTA A chr22:26975441-26975461 8 1.67e-04 AACCATG GCCTTGTA GGGCG chr3:149376368-149376388 13 2.25e-04 AGCTCTTGTG ACCATATT chr1:51766939-51766959 12 2.25e-04 gctggtgact accatatt t chr13:47183328-47183348 13 2.35e-04 TGTCACCTGT TCCATATT chr1:11994627-11994647 5 2.47e-04 GCTG CCCTAATA AGGAGAGG chr11:121289509-12128952 7 2.74e-04 gaagtt gccttaca tggttc chr7:92214471-92214491 11 3.11e-04 ccaaattatg cccaaata ag chr5:149555313-149555333 4 3.11e-04 agg cccaaata agggatcac chr9:79249471-79249491 12 3.11e-04 tcacactgta cccaaata a chr9:136306193-136306213 4 3.53e-04 AAG GCCTTGTT CAGGCGTGT chr12:91247967-91247987 9 4.00e-04 CACCATTT ACCAAATA AGGT chr7:150942668-150942688 13 4.00e-04 GGCGGGGCTG CCCATGTA chr5:114641922-114641942 13 4.15e-04 ATGGAAGCAG GCCATGTT chr12:53301688-53301708 13 4.50e-04 CAGGTACAAC TCCTTGTA chr11:65668104-65668124 4 5.94e-04 CTG CCCATACA TGGTGTAAC chr7:44921353-44921373 10 6.35e-04 AGTGTTCTT GGCATATA CTC chr8:9577989-9578009 6 7.07e-04 TCATC TCCTTACA AGGCTTC chr7:4784843-4784863 3 7.07e-04 CT TCCTAATT TGGTGTGCAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCWTATA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:118191455-11819147 1.2e-05 12_[+1] chr15:96873821-96873841 1.2e-05 12_[+1] chr22:36851283-36851303 1.2e-05 11_[+1]_1 chr6:33029934-33029954 1.2e-05 12_[+1] chr10:62477797-62477817 1.2e-05 [+1]_12 chr12:833782-833802 1.2e-05 9_[+1]_3 chr3:99595064-99595084 1.2e-05 2_[+1]_10 chr19:1026512-1026532 1.2e-05 4_[+1]_8 chr3:186830923-186830943 2.5e-05 10_[+1]_2 chr4:88480870-88480890 2.5e-05 11_[+1]_1 chr20:45180622-45180642 3.7e-05 1_[+1]_11 chr4:3048049-3048069 5e-05 6_[+1]_6 chr11:60532608-60532628 5e-05 7_[+1]_5 chr17:48726711-48726731 5e-05 1_[+1]_11 chr4:95373982-95374002 5e-05 5_[+1]_7 chr2:46116409-46116429 7.2e-05 12_[+1] chr1:235097638-235097658 7.2e-05 7_[+1]_5 chr6:158402575-158402595 7.2e-05 9_[+1]_3 chr5:133891631-133891651 7.2e-05 5_[+1]_7 chr5:126059492-126059512 8.4e-05 4_[+1]_8 chr8:67687348-67687368 8.4e-05 10_[+1]_2 chr2:106015553-106015573 0.0001 3_[+1]_9 chr2:13333376-13333396 0.00011 3_[+1]_9 chr11:116603669-11660368 0.00017 11_[+1]_1 chr22:26975441-26975461 0.00017 7_[+1]_5 chr3:149376368-149376388 0.00022 12_[+1] chr1:51766939-51766959 0.00022 11_[+1]_1 chr13:47183328-47183348 0.00024 12_[+1] chr1:11994627-11994647 0.00025 4_[+1]_8 chr11:121289509-12128952 0.00027 6_[+1]_6 chr7:92214471-92214491 0.00031 10_[+1]_2 chr5:149555313-149555333 0.00031 3_[+1]_9 chr9:79249471-79249491 0.00031 11_[+1]_1 chr9:136306193-136306213 0.00035 3_[+1]_9 chr12:91247967-91247987 0.0004 8_[+1]_4 chr7:150942668-150942688 0.0004 12_[+1] chr5:114641922-114641942 0.00041 12_[+1] chr12:53301688-53301708 0.00045 12_[+1] chr11:65668104-65668124 0.00059 3_[+1]_9 chr7:44921353-44921373 0.00064 9_[+1]_3 chr8:9577989-9578009 0.00071 5_[+1]_7 chr7:4784843-4784863 0.00071 2_[+1]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCWTATA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCWTATA width=8 seqs=42 chr11:118191455-11819147 ( 13) GCCTTATA 1 chr15:96873821-96873841 ( 13) GCCTTATA 1 chr22:36851283-36851303 ( 12) GCCTTATA 1 chr6:33029934-33029954 ( 13) GCCTTATA 1 chr10:62477797-62477817 ( 1) GCCTTATA 1 chr12:833782-833802 ( 10) GCCTTATA 1 chr3:99595064-99595084 ( 3) GCCTTATA 1 chr19:1026512-1026532 ( 5) GCCTTATA 1 chr3:186830923-186830943 ( 11) GCCATATA 1 chr4:88480870-88480890 ( 12) GCCATATA 1 chr20:45180622-45180642 ( 2) CCCTTATA 1 chr4:3048049-3048069 ( 7) GCCTTATT 1 chr11:60532608-60532628 ( 8) GCCTTATT 1 chr17:48726711-48726731 ( 2) GCCTTATT 1 chr4:95373982-95374002 ( 6) GCCTTATT 1 chr2:46116409-46116429 ( 13) ACCTTATA 1 chr1:235097638-235097658 ( 8) CCCATATA 1 chr6:158402575-158402595 ( 10) CCCATATA 1 chr5:133891631-133891651 ( 6) ACCTTATA 1 chr5:126059492-126059512 ( 5) GCCATATT 1 chr8:67687348-67687368 ( 11) GCCATATT 1 chr2:106015553-106015573 ( 4) ACCATATA 1 chr2:13333376-13333396 ( 4) TCCATATA 1 chr11:116603669-11660368 ( 12) GCCTTGTA 1 chr22:26975441-26975461 ( 8) GCCTTGTA 1 chr3:149376368-149376388 ( 13) ACCATATT 1 chr1:51766939-51766959 ( 12) ACCATATT 1 chr13:47183328-47183348 ( 13) TCCATATT 1 chr1:11994627-11994647 ( 5) CCCTAATA 1 chr11:121289509-12128952 ( 7) GCCTTACA 1 chr7:92214471-92214491 ( 11) CCCAAATA 1 chr5:149555313-149555333 ( 4) CCCAAATA 1 chr9:79249471-79249491 ( 12) CCCAAATA 1 chr9:136306193-136306213 ( 4) GCCTTGTT 1 chr12:91247967-91247987 ( 9) ACCAAATA 1 chr7:150942668-150942688 ( 13) CCCATGTA 1 chr5:114641922-114641942 ( 13) GCCATGTT 1 chr12:53301688-53301708 ( 13) TCCTTGTA 1 chr11:65668104-65668124 ( 4) CCCATACA 1 chr7:44921353-44921373 ( 10) GGCATATA 1 chr8:9577989-9578009 ( 6) TCCTTACA 1 chr7:4784843-4784863 ( 3) TCCTAATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCWTATA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.77211 E= 1.8e-028 -66 -32 93 -95 -1204 186 -353 -1204 -1204 190 -1204 -1204 100 -1204 -1204 125 -66 -1204 -1204 189 193 -1204 -95 -1204 -1204 -191 -1204 201 166 -1204 -1204 31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCWTATA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 42 E= 1.8e-028 0.142857 0.214286 0.523810 0.119048 0.000000 0.976190 0.023810 0.000000 0.000000 1.000000 0.000000 0.000000 0.452381 0.000000 0.000000 0.547619 0.142857 0.000000 0.000000 0.857143 0.857143 0.000000 0.142857 0.000000 0.000000 0.071429 0.000000 0.928571 0.714286 0.000000 0.000000 0.285714 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCWTATA MEME-1 regular expression -------------------------------------------------------------------------------- [GC]CC[TA]TAT[AT] -------------------------------------------------------------------------------- Time 4.21 secs. ******************************************************************************** ******************************************************************************** MOTIF CTTCCKSY MEME-2 width = 8 sites = 23 llr = 180 E-value = 5.1e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTTCCKSY MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::1 pos.-specific C 9::aa154 probability G :::::34: matrix T 1aa::514 bits 2.1 ** 1.9 **** 1.7 **** 1.5 ***** Relative 1.3 ***** Entropy 1.1 ***** (11.3 bits) 0.9 ***** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTTCCTCC consensus GGT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTCCKSY MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:47418873-47418893 9 1.47e-05 CTTCTCCC CTTCCTCT CTCA chr3:178231501-178231521 12 1.47e-05 GGACCTTGGC CTTCCTCT T chr3:189343515-189343535 3 2.98e-05 GA CTTCCTGT GTTTCTTTCT chr13:21347410-21347430 7 2.98e-05 GAAGGC CTTCCTGT CTGACA chr15:75185458-75185478 11 2.98e-05 TGGGCCTTGC CTTCCTGT AG chr22:40811797-40811817 1 2.98e-05 . CTTCCTGT TGTGCCCATG chr10:72345129-72345149 11 2.98e-05 AGCCAGCTCT CTTCCTGT TC chr14:75760998-75761018 3 8.20e-05 cg cTTCCGCT CTGCCCATAT chr15:90931286-90931306 5 1.20e-04 CTTC CTTCCGCC TACGGAGA chr6:28129531-28129551 11 1.20e-04 CTGAGAGGGA CTTCCGCC CC chr16:23710594-23710614 7 1.20e-04 CATAGA CTTCCGCC TGAGAA chr2:27294561-27294581 8 1.41e-04 CAAGCCG CTTCCGGC GGGGG chr1:39492448-39492468 10 1.41e-04 tagccagca cttccggc tgt chr6:111187959-111187979 1 1.56e-04 . cttcctca gttcaccaag chr3:139174883-139174903 12 1.71e-04 TAGGCGTGCC CTTCCTGA G chr2:206564817-206564837 3 2.00e-04 GG CTTCCCCT CCCCACTGCC chr2:219262841-219262861 7 2.00e-04 CACACG CTTCCTTT TGGGGT chr9:117196150-117196170 12 2.69e-04 ATGGTCTATG CTTCCTTC C chr15:90642556-90642576 13 2.69e-04 gcgagtccct cttccccc chr11:12211261-12211281 2 2.69e-04 G CTTCCGCA GGCAGCCTGA chr16:22202292-22202312 5 3.07e-04 GCCC CTTCCCGC CCTTCCAT chr3:119528662-119528682 3 3.96e-04 CA TTTCCTGC CGGAATGGCC chr1:154307637-154307657 7 4.90e-04 AGCTTG TTTCCGCC CTGGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTCCKSY MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:47418873-47418893 1.5e-05 8_[+2]_4 chr3:178231501-178231521 1.5e-05 11_[+2]_1 chr3:189343515-189343535 3e-05 2_[+2]_10 chr13:21347410-21347430 3e-05 6_[+2]_6 chr15:75185458-75185478 3e-05 10_[+2]_2 chr22:40811797-40811817 3e-05 [+2]_12 chr10:72345129-72345149 3e-05 10_[+2]_2 chr14:75760998-75761018 8.2e-05 2_[+2]_10 chr15:90931286-90931306 0.00012 4_[+2]_8 chr6:28129531-28129551 0.00012 10_[+2]_2 chr16:23710594-23710614 0.00012 6_[+2]_6 chr2:27294561-27294581 0.00014 7_[+2]_5 chr1:39492448-39492468 0.00014 9_[+2]_3 chr6:111187959-111187979 0.00016 [+2]_12 chr3:139174883-139174903 0.00017 11_[+2]_1 chr2:206564817-206564837 0.0002 2_[+2]_10 chr2:219262841-219262861 0.0002 6_[+2]_6 chr9:117196150-117196170 0.00027 11_[+2]_1 chr15:90642556-90642576 0.00027 12_[+2] chr11:12211261-12211281 0.00027 1_[+2]_11 chr16:22202292-22202312 0.00031 4_[+2]_8 chr3:119528662-119528682 0.0004 2_[+2]_10 chr1:154307637-154307657 0.00049 6_[+2]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTCCKSY MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTTCCKSY width=8 seqs=23 chr3:47418873-47418893 ( 9) CTTCCTCT 1 chr3:178231501-178231521 ( 12) CTTCCTCT 1 chr3:189343515-189343535 ( 3) CTTCCTGT 1 chr13:21347410-21347430 ( 7) CTTCCTGT 1 chr15:75185458-75185478 ( 11) CTTCCTGT 1 chr22:40811797-40811817 ( 1) CTTCCTGT 1 chr10:72345129-72345149 ( 11) CTTCCTGT 1 chr14:75760998-75761018 ( 3) CTTCCGCT 1 chr15:90931286-90931306 ( 5) CTTCCGCC 1 chr6:28129531-28129551 ( 11) CTTCCGCC 1 chr16:23710594-23710614 ( 7) CTTCCGCC 1 chr2:27294561-27294581 ( 8) CTTCCGGC 1 chr1:39492448-39492468 ( 10) CTTCCGGC 1 chr6:111187959-111187979 ( 1) CTTCCTCA 1 chr3:139174883-139174903 ( 12) CTTCCTGA 1 chr2:206564817-206564837 ( 3) CTTCCCCT 1 chr2:219262841-219262861 ( 7) CTTCCTTT 1 chr9:117196150-117196170 ( 12) CTTCCTTC 1 chr15:90642556-90642576 ( 13) CTTCCCCC 1 chr11:12211261-12211281 ( 2) CTTCCGCA 1 chr16:22202292-22202312 ( 5) CTTCCCGC 1 chr3:119528662-119528682 ( 3) TTTCCTGC 1 chr1:154307637-154307657 ( 7) TTTCCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTCCKSY MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.2019 E= 5.1e-006 -1117 177 -1117 -141 -1117 -1117 -1117 211 -1117 -1117 -1117 211 -1117 190 -1117 -1117 -1117 190 -1117 -1117 -1117 -104 34 118 -1117 84 66 -141 -79 70 -1117 91 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTCCKSY MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 5.1e-006 0.000000 0.913043 0.000000 0.086957 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.130435 0.347826 0.521739 0.000000 0.478261 0.434783 0.086957 0.130435 0.434783 0.000000 0.434783 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTCCKSY MEME-2 regular expression -------------------------------------------------------------------------------- CTTCC[TG][CG][CT] -------------------------------------------------------------------------------- Time 7.06 secs. ******************************************************************************** ******************************************************************************** MOTIF ATAAGGCA MEME-3 width = 8 sites = 8 llr = 80 E-value = 2.5e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATAAGGCA MEME-3 Description -------------------------------------------------------------------------------- Simplified A a:8a1::9 pos.-specific C ::::::a: probability G ::3:9a:1 matrix T :a:::::: bits 2.1 ** * 1.9 ** * ** 1.7 ** * ** 1.5 ** * *** Relative 1.3 ******** Entropy 1.1 ******** (14.4 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ATAAGGCA consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATAAGGCA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:85742500-85742520 6 1.23e-05 TCCTC ATAAGGCA TCGTTTC chr18:43647655-43647675 3 1.23e-05 aa ataaggca accacccagg chr6:30239997-30240017 4 1.23e-05 caa ataaggca aatgcctag chr20:1064218-1064238 2 1.23e-05 a ataaggca aacacctact chr16:46983412-46983432 1 2.73e-05 . ATGAGGCA CCACCGGatg chr7:49852338-49852358 9 2.73e-05 gtggtgtg atgaggca tttc chr7:107531127-107531147 11 3.74e-05 aggagcgagt ataaagca gt chr19:11650736-11650756 3 5.24e-05 TT ATAAGGCG GCCTCGGGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATAAGGCA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:85742500-85742520 1.2e-05 5_[+3]_7 chr18:43647655-43647675 1.2e-05 2_[+3]_10 chr6:30239997-30240017 1.2e-05 3_[+3]_9 chr20:1064218-1064238 1.2e-05 1_[+3]_11 chr16:46983412-46983432 2.7e-05 [+3]_12 chr7:49852338-49852358 2.7e-05 8_[+3]_4 chr7:107531127-107531147 3.7e-05 10_[+3]_2 chr19:11650736-11650756 5.2e-05 2_[+3]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATAAGGCA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATAAGGCA width=8 seqs=8 chr1:85742500-85742520 ( 6) ATAAGGCA 1 chr18:43647655-43647675 ( 3) ATAAGGCA 1 chr6:30239997-30240017 ( 4) ATAAGGCA 1 chr20:1064218-1064238 ( 2) ATAAGGCA 1 chr16:46983412-46983432 ( 1) ATGAGGCA 1 chr7:49852338-49852358 ( 9) ATGAGGCA 1 chr7:107531127-107531147 ( 11) ATAAAGCA 1 chr19:11650736-11650756 ( 3) ATAAGGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATAAGGCA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.40106 E= 2.5e+000 215 -965 -965 -965 -965 -965 -965 211 173 -965 -14 -965 215 -965 -965 -965 -85 -965 167 -965 -965 -965 186 -965 -965 190 -965 -965 195 -965 -114 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATAAGGCA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 2.5e+000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.750000 0.000000 0.250000 0.000000 1.000000 0.000000 0.000000 0.000000 0.125000 0.000000 0.875000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.875000 0.000000 0.125000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATAAGGCA MEME-3 regular expression -------------------------------------------------------------------------------- AT[AG]AGGCA -------------------------------------------------------------------------------- Time 9.89 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCAGGAA MEME-4 width = 8 sites = 7 llr = 68 E-value = 7.4e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCAGGAA MEME-4 Description -------------------------------------------------------------------------------- Simplified A 1::a::9a pos.-specific C ::a::::: probability G 99::aa:: matrix T :1::::1: bits 2.1 * * 1.9 **** * 1.7 **** * 1.5 ****** Relative 1.3 ******** Entropy 1.1 ******** (14.1 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGCAGGAA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCAGGAA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:38895647-38895667 6 1.80e-05 tggcc ggcaggaa gggggag chr6:107450735-107450755 13 1.80e-05 CAGCAGCTGA GGCAGGAA chrX:13505602-13505622 5 1.80e-05 GATG GGCAGGAA CCTATTGC chr9:34994041-34994061 4 1.80e-05 GGA GGCAGGAA AGGCCCAAA chr14:64687464-64687484 5 4.77e-05 TGGT GTCAGGAA ACATGTGC chr21:43882899-43882919 4 4.77e-05 cac agcaggaA GTTCTCCTT chr8:81068550-81068570 9 6.60e-05 ccaagaga ggcaggta caag -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCAGGAA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:38895647-38895667 1.8e-05 5_[+4]_7 chr6:107450735-107450755 1.8e-05 12_[+4] chrX:13505602-13505622 1.8e-05 4_[+4]_8 chr9:34994041-34994061 1.8e-05 3_[+4]_9 chr14:64687464-64687484 4.8e-05 4_[+4]_8 chr21:43882899-43882919 4.8e-05 3_[+4]_9 chr8:81068550-81068570 6.6e-05 8_[+4]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCAGGAA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCAGGAA width=8 seqs=7 chr7:38895647-38895667 ( 6) GGCAGGAA 1 chr6:107450735-107450755 ( 13) GGCAGGAA 1 chrX:13505602-13505622 ( 5) GGCAGGAA 1 chr9:34994041-34994061 ( 4) GGCAGGAA 1 chr14:64687464-64687484 ( 5) GTCAGGAA 1 chr21:43882899-43882919 ( 4) AGCAGGAA 1 chr8:81068550-81068570 ( 9) GGCAGGTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCAGGAA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.69928 E= 7.4e+001 -66 -945 164 -945 -945 -945 164 -69 -945 190 -945 -945 215 -945 -945 -945 -945 -945 186 -945 -945 -945 186 -945 192 -945 -945 -69 215 -945 -945 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCAGGAA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 7.4e+001 0.142857 0.000000 0.857143 0.000000 0.000000 0.000000 0.857143 0.142857 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.857143 0.000000 0.000000 0.142857 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCAGGAA MEME-4 regular expression -------------------------------------------------------------------------------- GGCAGGAA -------------------------------------------------------------------------------- Time 12.85 secs. ******************************************************************************** ******************************************************************************** MOTIF ATATATGG MEME-5 width = 8 sites = 3 llr = 34 E-value = 2.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATATATGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A a:a:a::: pos.-specific C :::::::: probability G ::::::aa matrix T :a:a:a:: bits 2.1 ****** 1.9 ******** 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (16.5 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ATATATGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATATATGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr8:22551056-22551076 1 1.08e-05 . ATATATGG ACAGACAAAG chr2:86669949-86669969 1 1.08e-05 . ATATATGG AGGGATGGGG chr12:109085480-10908550 3 1.08e-05 CC ATATATGG TAAAAACCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATATATGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:22551056-22551076 1.1e-05 [+5]_12 chr2:86669949-86669969 1.1e-05 [+5]_12 chr12:109085480-10908550 1.1e-05 2_[+5]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATATATGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATATATGG width=8 seqs=3 chr8:22551056-22551076 ( 1) ATATATGG 1 chr2:86669949-86669969 ( 1) ATATATGG 1 chr12:109085480-10908550 ( 3) ATATATGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATATATGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.73854 E= 2.6e+003 214 -823 -823 -823 -823 -823 -823 211 214 -823 -823 -823 -823 -823 -823 211 214 -823 -823 -823 -823 -823 -823 211 -823 -823 186 -823 -823 -823 186 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATATATGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 2.6e+003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATATATGG MEME-5 regular expression -------------------------------------------------------------------------------- ATATATGG -------------------------------------------------------------------------------- Time 13.61 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:941008-941028 9.02e-01 20 chr5:92906517-92906537 9.57e-01 20 chr15:31637868-31637888 2.44e-01 20 chr19:17356840-17356860 7.82e-01 20 chr7:150942668-150942688 1.30e-01 20 chr4:95373982-95374002 5.65e-03 5_[+1(4.96e-05)]_7 chr16:23710594-23710614 6.44e-02 20 chr7:143078332-143078352 6.13e-01 20 chr16:48200079-48200099 1.09e-01 20 chr10:71079174-71079194 5.38e-01 20 chr9:36136648-36136668 9.79e-01 20 chr3:139174883-139174903 9.49e-02 20 chr9:136306193-136306213 3.81e-02 20 chr3:9821977-9821997 3.70e-01 20 chr21:44011121-44011141 7.19e-01 20 chr7:43690849-43690869 5.38e-01 20 chr22:26975441-26975461 2.55e-02 20 chr5:169816429-169816449 3.51e-01 20 chr1:151446033-151446053 1.51e-01 20 chr6:152956113-152956133 4.65e-01 20 chr19:54618015-54618035 9.22e-01 20 chr20:18782739-18782759 6.57e-01 20 chr12:94956688-94956708 1.83e-01 20 chr2:68412832-68412852 1.90e-01 20 chr10:72345129-72345149 4.31e-02 10_[+2(2.98e-05)]_2 chr19:5271318-5271338 8.84e-01 20 chr1:156631266-156631286 4.43e-01 20 chr8:67687348-67687368 4.26e-02 10_[+1(8.41e-05)]_2 chr10:22609625-22609645 4.37e-01 20 chr8:144614429-144614449 8.21e-02 20 chr17:48726711-48726731 3.15e-03 1_[+1(4.96e-05)]_11 chr19:39174390-39174410 7.10e-01 20 chr6:12093188-12093208 7.56e-02 20 chr6:43701869-43701889 9.84e-01 20 chr2:178410069-178410089 9.14e-01 20 chr19:44036829-44036849 3.38e-01 20 chr3:53222495-53222515 1.28e-02 20 chr20:1064218-1064238 1.70e-03 1_[+3(1.23e-05)]_11 chr4:38671044-38671064 3.30e-01 20 chr3:47325321-47325341 8.26e-01 20 chr22:40811797-40811817 2.58e-02 [+2(2.98e-05)]_12 chr9:136036525-136036545 6.81e-01 20 chr11:12211261-12211281 1.42e-02 20 chr6:111187959-111187979 4.98e-02 20 chr13:45928178-45928198 3.99e-01 20 chr1:51766939-51766959 4.24e-02 20 chr16:85250736-85250756 9.63e-01 20 chr10:73291462-73291482 3.82e-01 20 chr6:30239997-30240017 7.04e-04 3_[+3(1.23e-05)]_9 chr9:79249471-79249491 2.17e-01 20 chr1:154307637-154307657 5.27e-02 20 chr3:107629982-107630002 3.73e-01 20 chr20:45180622-45180642 5.21e-04 1_[+1(3.68e-05)]_11 chr10:110822365-11082238 8.03e-01 20 chr4:100998092-100998112 6.88e-01 20 chr11:121289509-12128952 1.59e-02 20 chr4:40240662-40240682 5.42e-01 20 chr7:44921353-44921373 2.23e-02 20 chr5:41874798-41874818 4.88e-01 20 chr22:34238613-34238633 4.07e-01 20 chr8:42270512-42270532 6.13e-01 20 chr4:146851854-146851874 3.98e-01 20 chr2:191142503-191142523 1.56e-01 20 chr3:119528662-119528682 5.90e-02 20 chr15:76632965-76632985 7.12e-01 20 chr19:18058244-18058264 3.93e-01 20 chr17:36193027-36193047 8.81e-01 20 chr18:43647655-43647675 7.79e-04 2_[+3(1.23e-05)]_10 chr10:100248964-10024898 1.68e-01 20 chr22:36775791-36775811 1.27e-01 20 chr17:27949575-27949595 3.50e-01 20 chr19:48947703-48947723 3.38e-01 20 chr5:133891631-133891651 4.50e-03 5_[+1(7.16e-05)]_7 chr10:33243172-33243192 3.11e-01 20 chr14:91797378-91797398 3.08e-01 20 chr2:13333376-13333396 1.34e-06 8_[+3(1.23e-05)]_4 chr9:34994041-34994061 2.98e-02 3_[+4(1.80e-05)]_9 chr11:66085506-66085526 2.74e-01 20 chr9:37407691-37407711 1.46e-01 20 chr3:189290963-189290983 5.70e-01 20 chr2:74060251-74060271 6.88e-01 20 chr19:1026512-1026532 2.23e-04 4_[+1(1.25e-05)]_8 chr2:10975502-10975522 6.54e-01 20 chr17:32569778-32569798 1.74e-01 20 chr10:124895478-12489549 1.09e-01 20 chr14:50325239-50325259 5.31e-01 20 chr12:4333862-4333882 6.39e-01 20 chr6:43142030-43142050 9.41e-01 20 chr21:43882899-43882919 1.44e-02 3_[+4(4.77e-05)]_9 chr15:52027564-52027584 3.95e-02 20 chr11:94809913-94809933 5.87e-01 20 chr1:1333726-1333746 4.19e-01 20 chr5:137827833-137827853 8.82e-02 20 chr1:41962029-41962049 9.99e-01 20 chr3:178231501-178231521 1.84e-02 11_[+2(1.47e-05)]_1 chr2:37801332-37801352 3.43e-01 20 chr9:126691801-126691821 7.18e-02 20 chr14:75642849-75642869 8.85e-01 20 chr5:114641922-114641942 4.10e-02 20 chr5:126059492-126059512 1.45e-03 4_[+1(8.41e-05)]_8 chr1:86042728-86042748 5.76e-01 20 chr14:40150123-40150143 7.65e-01 20 chr15:37321023-37321043 4.91e-01 20 chr16:1143574-1143594 9.83e-01 20 chr1:20511948-20511968 5.11e-01 20 chr3:149376368-149376388 1.55e-01 20 chr1:145477531-145477551 5.80e-01 20 chr14:64687464-64687484 5.12e-03 4_[+4(4.77e-05)]_8 chr2:106015553-106015573 6.95e-05 20 chr3:99595064-99595084 3.52e-06 2_[+1(1.25e-05)]_10 chr3:187334252-187334272 1.69e-01 20 chr11:7517549-7517569 7.10e-01 20 chrX:39350929-39350949 8.40e-01 20 chr1:11863308-11863328 6.74e-01 20 chr12:833782-833802 2.37e-04 9_[+1(1.25e-05)]_3 chr1:47082635-47082655 7.23e-02 20 chr10:62477797-62477817 3.52e-04 [+1(1.25e-05)]_12 chr2:73520800-73520820 6.28e-01 20 chr12:8635886-8635906 9.00e-01 20 chr11:94610054-94610074 5.46e-03 20 chr15:52554215-52554235 9.20e-01 20 chr2:7165395-7165415 4.16e-01 20 chr17:4847571-4847591 3.44e-01 20 chr17:77784045-77784065 9.79e-01 20 chr6:158402575-158402595 1.42e-03 9_[+1(7.16e-05)]_3 chr1:156634880-156634900 3.16e-01 20 chr14:22940725-22940745 6.51e-01 20 chr3:55762991-55763011 2.35e-01 20 chr3:47418873-47418893 2.11e-02 8_[+2(1.47e-05)]_4 chr1:66782632-66782652 3.89e-01 20 chr6:28129531-28129551 5.66e-02 20 chr11:57282341-57282361 7.36e-01 20 chr15:90642556-90642576 2.17e-01 20 chr12:109085480-10908550 2.42e-03 2_[+5(1.08e-05)]_10 chr16:81764539-81764559 2.77e-01 20 chr6:7146868-7146888 8.11e-03 2_[+5(6.78e-05)]_10 chr15:90931286-90931306 1.11e-01 20 chr16:53469086-53469106 8.07e-01 20 chr14:64472750-64472770 9.43e-01 20 chr7:50479213-50479233 2.68e-01 20 chr7:49852338-49852358 2.12e-02 8_[+3(2.73e-05)]_4 chr2:223726379-223726399 9.94e-01 20 chr2:198173144-198173164 7.33e-01 20 chr16:22202292-22202312 1.22e-01 20 chr1:54959398-54959418 4.71e-01 20 chr19:58873334-58873354 5.60e-01 20 chr7:4784843-4784863 1.85e-02 20 chr16:46983412-46983432 1.54e-02 [+3(2.73e-05)]_12 chr11:60532608-60532628 3.03e-03 7_[+1(4.96e-05)]_5 chr1:11994627-11994647 8.08e-04 20 chr2:86669949-86669969 6.27e-03 [+5(1.08e-05)]_12 chr1:233857210-233857230 9.82e-02 20 chr1:90013523-90013543 6.02e-01 20 chrX:13505602-13505622 9.49e-03 4_[+4(1.80e-05)]_8 chr4:3048049-3048069 3.51e-03 6_[+1(4.96e-05)]_6 chr1:85742500-85742520 5.21e-04 5_[+3(1.23e-05)]_7 chr4:88480870-88480890 3.54e-03 11_[+1(2.47e-05)]_1 chr15:75185458-75185478 2.26e-02 10_[+2(2.98e-05)]_2 chr3:37847831-37847851 5.41e-01 20 chr2:64523138-64523158 6.07e-01 20 chr5:158103772-158103792 9.10e-01 20 chr14:75760998-75761018 1.46e-01 2_[+2(8.20e-05)]_10 chr3:186830923-186830943 4.52e-03 10_[+1(2.47e-05)]_2 chr19:39165690-39165710 9.38e-01 20 chr1:154976627-154976647 2.44e-01 20 chr6:150326439-150326459 9.29e-01 20 chr19:39896189-39896209 3.91e-01 20 chr17:73402252-73402272 8.03e-01 20 chr2:68979050-68979070 1.14e-02 20 chr8:9577989-9578009 1.54e-02 20 chr4:153355336-153355356 5.31e-01 20 chr7:107531127-107531147 6.81e-03 10_[+3(3.74e-05)]_2 chr8:22552896-22552916 4.96e-01 20 chr13:47183328-47183348 1.51e-01 20 chr2:69135690-69135710 4.27e-01 20 chr1:95743894-95743914 2.93e-01 20 chr16:50758441-50758461 7.74e-01 20 chr6:107450735-107450755 2.05e-03 12_[+4(1.80e-05)] chr2:219262841-219262861 1.36e-01 20 chr1:19276731-19276751 4.43e-01 20 chr18:42304346-42304366 2.08e-02 20 chr20:57033598-57033618 2.06e-01 20 chr15:78819856-78819876 5.59e-02 20 chr12:91247967-91247987 2.59e-02 20 chr11:73038648-73038668 3.68e-01 20 chr13:21347410-21347430 1.34e-02 6_[+2(2.98e-05)]_6 chr3:143690284-143690304 3.60e-01 20 chr10:6186813-6186833 6.43e-01 20 chr11:60145308-60145328 6.61e-01 20 chr1:39492448-39492468 4.27e-02 20 chr21:34753093-34753113 1.89e-01 20 chr19:11650736-11650756 1.00e-02 2_[+3(5.24e-05)]_10 chrX:133503717-133503737 4.29e-01 20 chr1:209791242-209791262 3.62e-01 20 chr9:117196150-117196170 6.02e-02 20 chr18:9711797-9711817 5.28e-01 20 chr19:32897032-32897052 6.97e-01 20 chr7:38895647-38895667 1.47e-02 5_[+4(1.80e-05)]_7 chr15:43415536-43415556 2.87e-01 20 chr6:33029934-33029954 1.33e-02 12_[+1(1.25e-05)] chr19:57792674-57792694 9.33e-02 20 chr8:22551056-22551076 3.47e-03 [+5(1.08e-05)]_12 chr12:50616483-50616503 9.47e-02 20 chr17:5124429-5124449 1.79e-01 20 chr10:99401178-99401198 1.00e+00 20 chr8:81068550-81068570 1.18e-02 8_[+4(6.60e-05)]_4 chr11:116603669-11660368 3.04e-02 20 chr2:28615339-28615359 2.50e-01 20 chr1:95179443-95179463 2.85e-01 20 chr7:150434457-150434477 4.46e-01 20 chr21:46574772-46574792 3.88e-01 20 chr4:6202072-6202092 3.88e-01 20 chrX:153744829-153744849 9.65e-01 20 chr10:13728529-13728549 9.46e-01 20 chr8:81947242-81947262 1.73e-01 20 chr2:232531713-232531733 2.72e-01 20 chr3:171180203-171180223 8.52e-01 20 chr7:155539149-155539169 2.86e-01 20 chr10:16478971-16478991 5.51e-01 20 chr2:206564817-206564837 2.44e-01 20 chr1:235097638-235097658 5.63e-04 10_[+5(6.78e-05)]_2 chr1:19812144-19812164 8.89e-01 20 chr1:110366044-110366064 3.14e-01 20 chr3:189343515-189343535 7.45e-02 2_[+2(2.98e-05)]_10 chr2:27294561-27294581 9.66e-02 20 chr21:40203701-40203721 6.72e-01 20 chr22:36851283-36851303 3.70e-02 11_[+1(1.25e-05)]_1 chr10:97201132-97201152 7.12e-01 20 chr2:101434990-101435010 8.72e-01 20 chr17:41132170-41132190 5.95e-01 20 chr5:149555313-149555333 3.54e-04 20 chr10:102821210-10282123 5.08e-02 20 chr15:96873821-96873841 9.32e-03 12_[+1(1.25e-05)] chr7:92214471-92214491 4.02e-02 20 chr1:185663303-185663323 8.11e-01 20 chr19:30078676-30078696 2.77e-01 20 chr12:113883768-11388378 5.36e-01 20 chr4:47467246-47467266 2.34e-01 20 chr19:48936764-48936784 7.69e-01 20 chr7:151466391-151466411 4.58e-01 20 chr11:65668104-65668124 3.74e-03 20 chr6:139350783-139350803 1.69e-01 20 chr11:118191455-11819147 4.87e-03 12_[+1(1.25e-05)] chr14:34801552-34801572 8.27e-01 20 chr5:75395189-75395209 1.00e+00 20 chr11:77161448-77161468 6.86e-01 20 chr10:71924119-71924139 8.68e-01 20 chr7:139477912-139477932 3.68e-01 20 chr12:53301688-53301708 3.83e-02 20 chr2:46116409-46116429 9.89e-02 12_[+1(7.16e-05)] -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n10.farnam.hpc.yale.internal ********************************************************************************