******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/SP1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr9:2242016-2242036 1.0000 20 chr19:4328509-4328529 1.0000 20 chr1:27018814-27018834 1.0000 20 chr18:61034952-61034972 1.0000 20 chr2:17699759-17699779 1.0000 20 chr19:40728069-40728089 1.0000 20 chr4:26322313-26322333 1.0000 20 chrX:129300192-129300212 1.0000 20 chr19:1123195-1123215 1.0000 20 chr14:94492637-94492657 1.0000 20 chr19:3721545-3721565 1.0000 20 chr12:75724149-75724169 1.0000 20 chr19:2841382-2841402 1.0000 20 chr13:20532760-20532780 1.0000 20 chr11:107798943-10779896 1.0000 20 chr10:28592077-28592097 1.0000 20 chr19:1041114-1041134 1.0000 20 chr15:99396592-99396612 1.0000 20 chr2:11606389-11606409 1.0000 20 chr3:126423012-126423032 1.0000 20 chr19:4342915-4342935 1.0000 20 chr19:2945036-2945056 1.0000 20 chr19:1133725-1133745 1.0000 20 chr2:71454319-71454339 1.0000 20 chr5:32313338-32313358 1.0000 20 chr19:1507881-1507901 1.0000 20 chr19:47327785-47327805 1.0000 20 chr10:104155363-10415538 1.0000 20 chr6:80247188-80247208 1.0000 20 chr19:19249333-19249353 1.0000 20 chr6:139696564-139696584 1.0000 20 chr11:13299090-13299110 1.0000 20 chr1:33647721-33647741 1.0000 20 chr11:14913841-14913861 1.0000 20 chr1:154973365-154973385 1.0000 20 chr21:43299166-43299186 1.0000 20 chr21:40684402-40684422 1.0000 20 chr3:107241730-107241750 1.0000 20 chr20:40247106-40247126 1.0000 20 chr17:47866554-47866574 1.0000 20 chr19:46149481-46149501 1.0000 20 chr1:25757249-25757269 1.0000 20 chr8:33330702-33330722 1.0000 20 chr16:67217606-67217626 1.0000 20 chr19:33166146-33166166 1.0000 20 chr19:46148935-46148955 1.0000 20 chr20:17663003-17663023 1.0000 20 chr1:51985160-51985180 1.0000 20 chr2:65283406-65283426 1.0000 20 chr9:80911947-80911967 1.0000 20 chr1:62902171-62902191 1.0000 20 chr15:44487580-44487600 1.0000 20 chr12:14927207-14927227 1.0000 20 chrX:46988627-46988647 1.0000 20 chr10:101190540-10119056 1.0000 20 chr12:6960497-6960517 1.0000 20 chr16:4852974-4852994 1.0000 20 chr15:86338201-86338221 1.0000 20 chr3:127309664-127309684 1.0000 20 chr5:96144117-96144137 1.0000 20 chr4:175204402-175204422 1.0000 20 chr1:167691145-167691165 1.0000 20 chr22:20004442-20004462 1.0000 20 chr5:58423644-58423664 1.0000 20 chr3:131100564-131100584 1.0000 20 chr19:17420258-17420278 1.0000 20 chr9:34989564-34989584 1.0000 20 chr3:119813820-119813840 1.0000 20 chr16:58663870-58663890 1.0000 20 chr19:18654431-18654451 1.0000 20 chr6:82957517-82957537 1.0000 20 chr16:22202051-22202071 1.0000 20 chr6:159527931-159527951 1.0000 20 chr19:45873926-45873946 1.0000 20 chr3:149530945-149530965 1.0000 20 chr3:56591144-56591164 1.0000 20 chr16:90143797-90143817 1.0000 20 chr8:87354692-87354712 1.0000 20 chr19:7294410-7294430 1.0000 20 chr19:42580194-42580214 1.0000 20 chr4:170948544-170948564 1.0000 20 chr10:80828624-80828644 1.0000 20 chr19:3035724-3035744 1.0000 20 chr15:64673753-64673773 1.0000 20 chr22:35696188-35696208 1.0000 20 chrX:47415636-47415656 1.0000 20 chr1:6845247-6845267 1.0000 20 chr5:98109238-98109258 1.0000 20 chr8:145159283-145159303 1.0000 20 chr6:53409901-53409921 1.0000 20 chr3:93698914-93698934 1.0000 20 chr17:76237712-76237732 1.0000 20 chr19:41082702-41082722 1.0000 20 chr14:23755453-23755473 1.0000 20 chr17:39943180-39943200 1.0000 20 chr19:6372645-6372665 1.0000 20 chr19:13906082-13906102 1.0000 20 chr3:114866171-114866191 1.0000 20 chr18:12407955-12407975 1.0000 20 chr13:107188080-10718810 1.0000 20 chr3:185826984-185827004 1.0000 20 chr22:21400114-21400134 1.0000 20 chr18:56325609-56325629 1.0000 20 chr6:37225476-37225496 1.0000 20 chr16:1393233-1393253 1.0000 20 chr11:66725918-66725938 1.0000 20 chr17:40346532-40346552 1.0000 20 chr19:49224046-49224066 1.0000 20 chr22:37582476-37582496 1.0000 20 chr11:560889-560909 1.0000 20 chr14:78083273-78083293 1.0000 20 chr4:2845506-2845526 1.0000 20 chr1:220263235-220263255 1.0000 20 chr19:41120576-41120596 1.0000 20 chr4:468021-468041 1.0000 20 chr19:50372954-50372974 1.0000 20 chr20:56293671-56293691 1.0000 20 chr8:144450902-144450922 1.0000 20 chr16:2264949-2264969 1.0000 20 chr2:74685464-74685484 1.0000 20 chr10:102790945-10279096 1.0000 20 chr16:30621763-30621783 1.0000 20 chr1:10270465-10270485 1.0000 20 chr5:139017189-139017209 1.0000 20 chr11:46867854-46867874 1.0000 20 chr1:38397553-38397573 1.0000 20 chr19:8478121-8478141 1.0000 20 chr14:73393097-73393117 1.0000 20 chr2:42068094-42068114 1.0000 20 chr11:4629555-4629575 1.0000 20 chr17:74667926-74667946 1.0000 20 chr10:99393270-99393290 1.0000 20 chr19:13944562-13944582 1.0000 20 chr19:7198157-7198177 1.0000 20 chr7:856180-856200 1.0000 20 chr1:225965463-225965483 1.0000 20 chr6:62996201-62996221 1.0000 20 chr1:150669808-150669828 1.0000 20 chr19:21541719-21541739 1.0000 20 chr6:53412842-53412862 1.0000 20 chr1:206138185-206138205 1.0000 20 chr3:100211359-100211379 1.0000 20 chr17:27139579-27139599 1.0000 20 chr22:40440229-40440249 1.0000 20 chr1:85527928-85527948 1.0000 20 chr4:775682-775702 1.0000 20 chr6:108879811-108879831 1.0000 20 chr1:227127844-227127864 1.0000 20 chr12:53473244-53473264 1.0000 20 chr3:50605222-50605242 1.0000 20 chr21:35014567-35014587 1.0000 20 chr11:61349004-61349024 1.0000 20 chr17:80416467-80416487 1.0000 20 chr9:37465698-37465718 1.0000 20 chr19:37808630-37808650 1.0000 20 chr2:232646057-232646077 1.0000 20 chr17:7307505-7307525 1.0000 20 chr1:150601705-150601725 1.0000 20 chr12:49504715-49504735 1.0000 20 chr15:90118622-90118642 1.0000 20 chr12:104531941-10453196 1.0000 20 chr6:52529124-52529144 1.0000 20 chr19:14228666-14228686 1.0000 20 chrX:49125709-49125729 1.0000 20 chr15:85923675-85923695 1.0000 20 chr19:3344321-3344341 1.0000 20 chr18:9095474-9095494 1.0000 20 chr3:98620626-98620646 1.0000 20 chr7:5609877-5609897 1.0000 20 chr20:56004859-56004879 1.0000 20 chr19:17858384-17858404 1.0000 20 chr15:83478267-83478287 1.0000 20 chr1:28562532-28562552 1.0000 20 chr17:8534269-8534289 1.0000 20 chr19:36606306-36606326 1.0000 20 chr19:17377996-17378016 1.0000 20 chr3:148804358-148804378 1.0000 20 chr19:38893693-38893713 1.0000 20 chr3:27410971-27410991 1.0000 20 chr4:48782471-48782491 1.0000 20 chr5:145583071-145583091 1.0000 20 chr11:65601305-65601325 1.0000 20 chr1:153940246-153940266 1.0000 20 chr15:90895413-90895433 1.0000 20 chr4:166248734-166248754 1.0000 20 chr10:52384394-52384414 1.0000 20 chr17:38574287-38574307 1.0000 20 chr1:43312152-43312172 1.0000 20 chr1:27019661-27019681 1.0000 20 chr13:26796006-26796026 1.0000 20 chr11:34379636-34379656 1.0000 20 chr2:73460466-73460486 1.0000 20 chr19:54641314-54641334 1.0000 20 chr13:29293183-29293203 1.0000 20 chr11:64795187-64795207 1.0000 20 chr6:112194730-112194750 1.0000 20 chr6:122720630-122720650 1.0000 20 chr7:23053793-23053813 1.0000 20 chr19:20959032-20959052 1.0000 20 chr12:96252676-96252696 1.0000 20 chr7:30066398-30066418 1.0000 20 chr19:21105995-21106015 1.0000 20 chr17:79196862-79196882 1.0000 20 chr18:14132519-14132539 1.0000 20 chr19:10491345-10491365 1.0000 20 chr9:129987439-129987459 1.0000 20 chr20:44441143-44441163 1.0000 20 chr16:1728179-1728199 1.0000 20 chr19:8408215-8408235 1.0000 20 chr12:109535818-10953583 1.0000 20 chr11:2721366-2721386 1.0000 20 chr14:58765100-58765120 1.0000 20 chr1:150602209-150602229 1.0000 20 chr1:156391564-156391584 1.0000 20 chr19:18303793-18303813 1.0000 20 chr11:119205135-11920515 1.0000 20 chr1:36851689-36851709 1.0000 20 chr21:47604581-47604601 1.0000 20 chr15:89631522-89631542 1.0000 20 chr12:110011485-11001150 1.0000 20 chr4:52709182-52709202 1.0000 20 chr1:156389911-156389931 1.0000 20 chr6:153304257-153304277 1.0000 20 chr19:36193385-36193405 1.0000 20 chr11:124981579-12498159 1.0000 20 chr19:21950424-21950444 1.0000 20 chr2:73298521-73298541 1.0000 20 chr19:4471722-4471742 1.0000 20 chr12:2999973-2999993 1.0000 20 chr16:84538314-84538334 1.0000 20 chr1:51972399-51972419 1.0000 20 chr14:74960350-74960370 1.0000 20 chr10:101380282-10138030 1.0000 20 chr19:2900777-2900797 1.0000 20 chr15:43213093-43213113 1.0000 20 chr19:18315130-18315150 1.0000 20 chr19:17414289-17414309 1.0000 20 chr12:125534253-12553427 1.0000 20 chr1:153895588-153895608 1.0000 20 chr1:151763144-151763164 1.0000 20 chr14:51561938-51561958 1.0000 20 chr5:43313839-43313859 1.0000 20 chr11:17298192-17298212 1.0000 20 chr15:40697888-40697908 1.0000 20 chr9:131940636-131940656 1.0000 20 chr22:42840259-42840279 1.0000 20 chr17:41323134-41323154 1.0000 20 chr22:37172271-37172291 1.0000 20 chr10:25013646-25013666 1.0000 20 chr10:58121085-58121105 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_SP1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/SP1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.205 C 0.293 G 0.313 T 0.189 Background letter frequencies (from file dataset with add-one prior applied): A 0.205 C 0.293 G 0.313 T 0.189 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF RRCCAATC MEME-1 width = 8 sites = 39 llr = 295 E-value = 9.1e-024 ******************************************************************************** -------------------------------------------------------------------------------- Motif RRCCAATC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 53::aa:2 pos.-specific C 11aa::16 probability G 44:::::2 matrix T :2::::9: bits 2.4 * 2.2 ** 1.9 *** 1.7 ***** Relative 1.4 ***** Entropy 1.2 ***** (10.9 bits) 1.0 ***** 0.7 ***** 0.5 * ****** 0.2 ******** 0.0 -------- Multilevel AGCCAATC consensus GA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRCCAATC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr5:32313338-32313358 5 8.40e-06 CTCC AACCAATC CAGAGAGC chr19:18315130-18315150 4 2.12e-05 AGT AGCCAATC AGAGATTGT chr3:27410971-27410991 5 2.12e-05 CCTC AGCCAATC GGGAGCAG chr4:775682-775702 6 2.12e-05 CTAGG AGCCAATC ATGTCGG chr19:1133725-1133745 6 2.12e-05 CTAGC AGCCAATC ACAGCCA chr12:2999973-2999993 11 4.18e-05 CGAGAACACG GACCAATC GG chr4:166248734-166248754 9 4.18e-05 ACTGCACA GACCAATC ACCG chr19:19249333-19249353 12 4.18e-05 CATCCCGTCC GACCAATC A chr3:100211359-100211379 7 6.13e-05 CCGCCC GGCCAATC GGCAGC chr19:2900777-2900797 7 7.32e-05 AGTAGT GTCCAATC GAAGGC chr16:84538314-84538334 2 7.32e-05 G GTCCAATC GTGGAAGCGG chr19:21105995-21106015 8 7.32e-05 GGGAACC GTCCAATC AGGAA chr12:96252676-96252696 2 7.32e-05 C GTCCAATC ACAGAGGCAG chr19:21541719-21541739 13 7.32e-05 GCTGGGAACT GTCCAATC chr10:25013646-25013666 4 9.10e-05 ATT ACCCAATC GGGAGACGC chr3:98620626-98620646 13 9.10e-05 CTTCCGCGAA ACCCAATC chr19:50372954-50372974 6 9.10e-05 GACAG ACCCAATC GGGAAAC chr11:560889-560909 11 1.00e-04 CGCGCTGAGC AGCCAATA GG chr16:67217606-67217626 12 1.00e-04 CGTGACCTGC AGCCAATA A chr5:98109238-98109258 10 1.09e-04 TGCGGTCAC AACCAATG GGG chr7:30066398-30066418 13 1.49e-04 GCAGCTCTCA AGCCAATG chr11:65601305-65601325 9 1.49e-04 GACAATGC AGCCAATG GCGT chr20:56004859-56004879 11 1.49e-04 GAATAAAATT GACCAATA GC chr2:73298521-73298541 3 1.99e-04 AG GGCCAATA GGAAGCCAAG chr12:109535818-10953583 12 1.99e-04 GGGCCCATGG CGCCAATC C chr16:90143797-90143817 11 1.99e-04 AAGGCGAGCC CGCCAATC GG chr11:119205135-11920515 3 2.21e-04 CG GACCAATG AGTGATCGAC chr1:150669808-150669828 10 2.21e-04 AGCTGGTCA ATCCAATG AAG chr19:4471722-4471742 3 2.62e-04 AT GGCCAATG CCTGCTCCCT chr12:104531941-10453196 6 2.62e-04 CCCGT CTCCAATC GGCTGTT chr19:17420258-17420278 9 2.62e-04 CTGGATGC GGCCAATG GAAG chr14:74960350-74960370 3 2.70e-04 CT ACCCAATA GGCATGTTGG chr6:153304257-153304277 11 3.17e-04 TGCATGCGCG CACCAATA GG chr15:83478267-83478287 12 3.17e-04 TCTATCACCC AACCAACC C chr9:80911947-80911967 9 3.52e-04 TTCGCGCG AACCAATT AGCG chrX:46988627-46988647 5 4.85e-04 TAAG GACCAACC CTCTACTG chrX:47415636-47415656 7 6.07e-04 AAGTAG AGCCTATC AATGCC chr1:150602209-150602229 4 7.91e-04 GAA CACCAACC TGGAAAGAG chr11:66725918-66725938 10 8.27e-04 GCCCAGACA GCCCAACC CCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRCCAATC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:32313338-32313358 8.4e-06 4_[+1]_8 chr19:18315130-18315150 2.1e-05 3_[+1]_9 chr3:27410971-27410991 2.1e-05 4_[+1]_8 chr4:775682-775702 2.1e-05 5_[+1]_7 chr19:1133725-1133745 2.1e-05 5_[+1]_7 chr12:2999973-2999993 4.2e-05 10_[+1]_2 chr4:166248734-166248754 4.2e-05 8_[+1]_4 chr19:19249333-19249353 4.2e-05 11_[+1]_1 chr3:100211359-100211379 6.1e-05 6_[+1]_6 chr19:2900777-2900797 7.3e-05 6_[+1]_6 chr16:84538314-84538334 7.3e-05 1_[+1]_11 chr19:21105995-21106015 7.3e-05 7_[+1]_5 chr12:96252676-96252696 7.3e-05 1_[+1]_11 chr19:21541719-21541739 7.3e-05 12_[+1] chr10:25013646-25013666 9.1e-05 3_[+1]_9 chr3:98620626-98620646 9.1e-05 12_[+1] chr19:50372954-50372974 9.1e-05 5_[+1]_7 chr11:560889-560909 0.0001 10_[+1]_2 chr16:67217606-67217626 0.0001 11_[+1]_1 chr5:98109238-98109258 0.00011 9_[+1]_3 chr7:30066398-30066418 0.00015 12_[+1] chr11:65601305-65601325 0.00015 8_[+1]_4 chr20:56004859-56004879 0.00015 10_[+1]_2 chr2:73298521-73298541 0.0002 2_[+1]_10 chr12:109535818-10953583 0.0002 11_[+1]_1 chr16:90143797-90143817 0.0002 10_[+1]_2 chr11:119205135-11920515 0.00022 2_[+1]_10 chr1:150669808-150669828 0.00022 9_[+1]_3 chr19:4471722-4471742 0.00026 2_[+1]_10 chr12:104531941-10453196 0.00026 5_[+1]_7 chr19:17420258-17420278 0.00026 8_[+1]_4 chr14:74960350-74960370 0.00027 2_[+1]_10 chr6:153304257-153304277 0.00032 10_[+1]_2 chr15:83478267-83478287 0.00032 11_[+1]_1 chr9:80911947-80911967 0.00035 8_[+1]_4 chrX:46988627-46988647 0.00048 4_[+1]_8 chrX:47415636-47415656 0.00061 6_[+1]_6 chr1:150602209-150602229 0.00079 3_[+1]_9 chr11:66725918-66725938 0.00083 9_[+1]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRCCAATC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RRCCAATC width=8 seqs=39 chr5:32313338-32313358 ( 5) AACCAATC 1 chr19:18315130-18315150 ( 4) AGCCAATC 1 chr3:27410971-27410991 ( 5) AGCCAATC 1 chr4:775682-775702 ( 6) AGCCAATC 1 chr19:1133725-1133745 ( 6) AGCCAATC 1 chr12:2999973-2999993 ( 11) GACCAATC 1 chr4:166248734-166248754 ( 9) GACCAATC 1 chr19:19249333-19249353 ( 12) GACCAATC 1 chr3:100211359-100211379 ( 7) GGCCAATC 1 chr19:2900777-2900797 ( 7) GTCCAATC 1 chr16:84538314-84538334 ( 2) GTCCAATC 1 chr19:21105995-21106015 ( 8) GTCCAATC 1 chr12:96252676-96252696 ( 2) GTCCAATC 1 chr19:21541719-21541739 ( 13) GTCCAATC 1 chr10:25013646-25013666 ( 4) ACCCAATC 1 chr3:98620626-98620646 ( 13) ACCCAATC 1 chr19:50372954-50372974 ( 6) ACCCAATC 1 chr11:560889-560909 ( 11) AGCCAATA 1 chr16:67217606-67217626 ( 12) AGCCAATA 1 chr5:98109238-98109258 ( 10) AACCAATG 1 chr7:30066398-30066418 ( 13) AGCCAATG 1 chr11:65601305-65601325 ( 9) AGCCAATG 1 chr20:56004859-56004879 ( 11) GACCAATA 1 chr2:73298521-73298541 ( 3) GGCCAATA 1 chr12:109535818-10953583 ( 12) CGCCAATC 1 chr16:90143797-90143817 ( 11) CGCCAATC 1 chr11:119205135-11920515 ( 3) GACCAATG 1 chr1:150669808-150669828 ( 10) ATCCAATG 1 chr19:4471722-4471742 ( 3) GGCCAATG 1 chr12:104531941-10453196 ( 6) CTCCAATC 1 chr19:17420258-17420278 ( 9) GGCCAATG 1 chr14:74960350-74960370 ( 3) ACCCAATA 1 chr6:153304257-153304277 ( 11) CACCAATA 1 chr15:83478267-83478287 ( 12) AACCAACC 1 chr9:80911947-80911967 ( 9) AACCAATT 1 chrX:46988627-46988647 ( 5) GACCAACC 1 chrX:47415636-47415656 ( 7) AGCCTATC 1 chr1:150602209-150602229 ( 4) CACCAACC 1 chr11:66725918-66725938 ( 10) GCCCAACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRCCAATC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.83209 E= 9.1e-024 117 -119 39 -1193 59 -119 30 -7 -1193 177 -1193 -1193 -1193 177 -1193 -1193 225 -1193 -1193 -288 229 -1193 -1193 -1193 -1193 -151 -1193 225 -41 113 -80 -288 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRCCAATC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 39 E= 9.1e-024 0.461538 0.128205 0.410256 0.000000 0.307692 0.128205 0.384615 0.179487 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.974359 0.000000 0.000000 0.025641 1.000000 0.000000 0.000000 0.000000 0.000000 0.102564 0.000000 0.897436 0.153846 0.641026 0.179487 0.025641 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRCCAATC MEME-1 regular expression -------------------------------------------------------------------------------- [AG][GA]CCAATC -------------------------------------------------------------------------------- Time 1.83 secs. ******************************************************************************** ******************************************************************************** MOTIF YSATTGGY MEME-2 width = 8 sites = 30 llr = 230 E-value = 2.2e-013 ******************************************************************************** -------------------------------------------------------------------------------- Motif YSATTGGY MEME-2 Description -------------------------------------------------------------------------------- Simplified A :1a::::1 pos.-specific C 43:::::4 probability G 15:::aa2 matrix T 41:aa::3 bits 2.4 * * 2.2 *** 1.9 *** 1.7 ***** Relative 1.4 ***** Entropy 1.2 ***** (11.1 bits) 1.0 ***** 0.7 ***** 0.5 * ***** 0.2 ******** 0.0 -------- Multilevel TGATTGGC consensus CC T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YSATTGGY MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:5609877-5609897 5 8.02e-06 CCTA TGATTGGT CCATTTCC chr3:119813820-119813840 2 8.02e-06 G TGATTGGT GAAGAGAAGG chr12:125534253-12553427 11 4.04e-05 GAACGCGTCG CGATTGGT TG chr13:29293183-29293203 13 4.04e-05 GCCCCAGCGG CGATTGGT chr14:51561938-51561958 7 7.13e-05 AAGCTC TCATTGGC CACCAG chr11:2721366-2721386 9 7.13e-05 GTGTCCTG TCATTGGC CGAA chr19:36606306-36606326 3 7.13e-05 GG CGATTGGC GGACGCTCCT chr1:227127844-227127864 6 7.13e-05 GGTCG CGATTGGC TACGGGC chr1:10270465-10270485 4 7.13e-05 CTA CGATTGGC TGGCCGCCC chr16:4852974-4852994 11 7.13e-05 TCGCGCTCAC TCATTGGC CG chr1:153940246-153940266 1 1.01e-04 . CCATTGGC TCGATGTCCT chr10:99393270-99393290 6 1.01e-04 GCTGC CCATTGGC TGTTACC chr6:80247188-80247208 7 1.01e-04 GAGCTC CCATTGGC TTCTGT chr11:46867854-46867874 1 1.19e-04 . TTATTGGT CCTCGACGGA chr3:93698914-93698934 6 1.19e-04 ACCGA TGATTGGG CGAGCGC chr19:21950424-21950444 2 1.35e-04 C TGATTGGA CGGTTTCCAG chr19:2945036-2945056 11 1.35e-04 TCCGCACCCC TGATTGGA GA chr17:79196862-79196882 13 1.94e-04 TCCCGGGAGC TCATTGGG chr6:62996201-62996221 5 1.94e-04 GCTC TCATTGGG CGGTAGCG chr2:74685464-74685484 10 1.94e-04 CGCTGCTGT GGATTGGT CAC chr3:131100564-131100584 13 1.94e-04 GCCCAGGCTC GGATTGGT chr22:20004442-20004462 4 1.94e-04 CGC CGATTGGG CGGATGCGC chr6:122720630-122720650 8 2.56e-04 GCTCCTG GGATTGGC CAGGG chr22:21400114-21400134 13 2.56e-04 GAGCGCGTCG CTATTGGC chr1:225965463-225965483 7 2.96e-04 TCCTGC CCATTGGG CGAGCA chr6:37225476-37225496 4 2.96e-04 TCC CAATTGGT CGGCCCGTC chr17:74667926-74667946 1 3.76e-04 . AGATTGGC AGGTGCTTGA chr2:65283406-65283426 2 4.27e-04 C GTATTGGT GGAGCCGCGG chr16:1393233-1393253 10 4.68e-04 CGGCAGCGC TAATTGGA GGG chr1:153895588-153895608 11 6.52e-04 CCTTGAAGAA TGAGTGGC CG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YSATTGGY MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:5609877-5609897 8e-06 4_[+2]_8 chr3:119813820-119813840 8e-06 1_[+2]_11 chr12:125534253-12553427 4e-05 10_[+2]_2 chr13:29293183-29293203 4e-05 12_[+2] chr14:51561938-51561958 7.1e-05 6_[+2]_6 chr11:2721366-2721386 7.1e-05 8_[+2]_4 chr19:36606306-36606326 7.1e-05 2_[+2]_10 chr1:227127844-227127864 7.1e-05 5_[+2]_7 chr1:10270465-10270485 7.1e-05 3_[+2]_9 chr16:4852974-4852994 7.1e-05 10_[+2]_2 chr1:153940246-153940266 0.0001 [+2]_12 chr10:99393270-99393290 0.0001 5_[+2]_7 chr6:80247188-80247208 0.0001 6_[+2]_6 chr11:46867854-46867874 0.00012 [+2]_12 chr3:93698914-93698934 0.00012 5_[+2]_7 chr19:21950424-21950444 0.00014 1_[+2]_11 chr19:2945036-2945056 0.00014 10_[+2]_2 chr17:79196862-79196882 0.00019 12_[+2] chr6:62996201-62996221 0.00019 4_[+2]_8 chr2:74685464-74685484 0.00019 9_[+2]_3 chr3:131100564-131100584 0.00019 12_[+2] chr22:20004442-20004462 0.00019 3_[+2]_9 chr6:122720630-122720650 0.00026 7_[+2]_5 chr22:21400114-21400134 0.00026 12_[+2] chr1:225965463-225965483 0.0003 6_[+2]_6 chr6:37225476-37225496 0.0003 3_[+2]_9 chr17:74667926-74667946 0.00038 [+2]_12 chr2:65283406-65283426 0.00043 1_[+2]_11 chr16:1393233-1393253 0.00047 9_[+2]_3 chr1:153895588-153895608 0.00065 10_[+2]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YSATTGGY MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YSATTGGY width=8 seqs=30 chr7:5609877-5609897 ( 5) TGATTGGT 1 chr3:119813820-119813840 ( 2) TGATTGGT 1 chr12:125534253-12553427 ( 11) CGATTGGT 1 chr13:29293183-29293203 ( 13) CGATTGGT 1 chr14:51561938-51561958 ( 7) TCATTGGC 1 chr11:2721366-2721386 ( 9) TCATTGGC 1 chr19:36606306-36606326 ( 3) CGATTGGC 1 chr1:227127844-227127864 ( 6) CGATTGGC 1 chr1:10270465-10270485 ( 4) CGATTGGC 1 chr16:4852974-4852994 ( 11) TCATTGGC 1 chr1:153940246-153940266 ( 1) CCATTGGC 1 chr10:99393270-99393290 ( 6) CCATTGGC 1 chr6:80247188-80247208 ( 7) CCATTGGC 1 chr11:46867854-46867874 ( 1) TTATTGGT 1 chr3:93698914-93698934 ( 6) TGATTGGG 1 chr19:21950424-21950444 ( 2) TGATTGGA 1 chr19:2945036-2945056 ( 11) TGATTGGA 1 chr17:79196862-79196882 ( 13) TCATTGGG 1 chr6:62996201-62996221 ( 5) TCATTGGG 1 chr2:74685464-74685484 ( 10) GGATTGGT 1 chr3:131100564-131100584 ( 13) GGATTGGT 1 chr22:20004442-20004462 ( 4) CGATTGGG 1 chr6:122720630-122720650 ( 8) GGATTGGC 1 chr22:21400114-21400134 ( 13) CTATTGGC 1 chr1:225965463-225965483 ( 7) CCATTGGG 1 chr6:37225476-37225496 ( 4) CAATTGGT 1 chr17:74667926-74667946 ( 1) AGATTGGC 1 chr2:65283406-65283426 ( 2) GTATTGGT 1 chr16:1393233-1393253 ( 10) TAATTGGA 1 chr1:153895588-153895608 ( 11) TGAGTGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YSATTGGY MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 6.67028 E= 2.2e-013 -262 45 -123 120 -162 3 77 -92 229 -1155 -1155 -1155 -1155 -1155 -323 236 -1155 -1155 -1155 241 -1155 -1155 167 -1155 -1155 -1155 167 -1155 -104 56 -91 67 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YSATTGGY MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 2.2e-013 0.033333 0.400000 0.133333 0.433333 0.066667 0.300000 0.533333 0.100000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.033333 0.966667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.100000 0.433333 0.166667 0.300000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YSATTGGY MEME-2 regular expression -------------------------------------------------------------------------------- [TC][GC]ATTGG[CT] -------------------------------------------------------------------------------- Time 2.59 secs. ******************************************************************************** ******************************************************************************** MOTIF TCTCTYTT MEME-3 width = 8 sites = 9 llr = 84 E-value = 6.3e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTCTYTT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :82813:1 probability G :2:::::: matrix T a:8297a9 bits 2.4 * * 2.2 * * 1.9 * * ** 1.7 * * ** Relative 1.4 * * * ** Entropy 1.2 * ****** (13.4 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TCTCTTTT consensus GCT C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTYTT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:18303793-18303813 10 6.44e-06 TAACGCAAT TCTTTTTT CCG chr1:62902171-62902191 5 6.44e-06 TTCT TCTTTTTT GCTATTAG chr5:145583071-145583091 8 1.25e-05 GGCCCCC TCTCTCTT ACTGG chr12:14927207-14927227 11 1.25e-05 GAGGAGGCGG TCTCTCTT CC chr11:64795187-64795207 7 2.27e-05 CACTGC TCCCTTTT TAGACG chr6:82957517-82957537 13 3.58e-05 GGCTCCTGTA TGTCTCTT chrX:49125709-49125729 12 5.19e-05 CGCCTCTTGG TCTCCTTT T chr16:22202051-22202071 5 5.19e-05 CGAG TCTCTTTC CATGTTTT chr9:37465698-37465718 2 6.78e-05 A TGCCTTTT AGGGCGGGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTYTT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:18303793-18303813 6.4e-06 9_[+3]_3 chr1:62902171-62902191 6.4e-06 4_[+3]_8 chr5:145583071-145583091 1.3e-05 7_[+3]_5 chr12:14927207-14927227 1.3e-05 10_[+3]_2 chr11:64795187-64795207 2.3e-05 6_[+3]_6 chr6:82957517-82957537 3.6e-05 12_[+3] chrX:49125709-49125729 5.2e-05 11_[+3]_1 chr16:22202051-22202071 5.2e-05 4_[+3]_8 chr9:37465698-37465718 6.8e-05 1_[+3]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTYTT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTCTYTT width=8 seqs=9 chr19:18303793-18303813 ( 10) TCTTTTTT 1 chr1:62902171-62902191 ( 5) TCTTTTTT 1 chr5:145583071-145583091 ( 8) TCTCTCTT 1 chr12:14927207-14927227 ( 11) TCTCTCTT 1 chr11:64795187-64795207 ( 7) TCCCTTTT 1 chr6:82957517-82957537 ( 13) TGTCTCTT 1 chrX:49125709-49125729 ( 12) TCTCCTTT 1 chr16:22202051-22202071 ( 5) TCTCTTTC 1 chr9:37465698-37465718 ( 2) TGCCTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTYTT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.62696 E= 6.3e+000 -982 -982 -982 240 -982 141 -49 -982 -982 -40 -982 204 -982 141 -982 24 -982 -140 -982 224 -982 19 -982 182 -982 -982 -982 240 -982 -140 -982 224 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTYTT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 6.3e+000 0.000000 0.000000 0.000000 1.000000 0.000000 0.777778 0.222222 0.000000 0.000000 0.222222 0.000000 0.777778 0.000000 0.777778 0.000000 0.222222 0.000000 0.111111 0.000000 0.888889 0.000000 0.333333 0.000000 0.666667 0.000000 0.000000 0.000000 1.000000 0.000000 0.111111 0.000000 0.888889 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTYTT MEME-3 regular expression -------------------------------------------------------------------------------- T[CG][TC][CT]T[TC]TT -------------------------------------------------------------------------------- Time 6.00 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTKTTTG MEME-4 width = 8 sites = 2 llr = 24 E-value = 1.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTKTTTG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::::::: probability G :::5:::a matrix T aaa5aaa: bits 2.4 *** *** 2.2 *** *** 1.9 *** *** 1.7 *** **** Relative 1.4 *** **** Entropy 1.2 *** **** (17.2 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTTGTTTG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTKTTTG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:10491345-10491365 1 2.70e-06 . TTTTTTTG CCATGGTGGC chr17:38574287-38574307 3 7.16e-06 GG TTTGTTTG AATAAACCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTKTTTG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:10491345-10491365 2.7e-06 [+4]_12 chr17:38574287-38574307 7.2e-06 2_[+4]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTKTTTG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTKTTTG width=8 seqs=2 chr19:10491345-10491365 ( 1) TTTTTTTG 1 chr17:38574287-38574307 ( 3) TTTGTTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTKTTTG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.6653 E= 1.1e+003 -765 -765 -765 240 -765 -765 -765 240 -765 -765 -765 240 -765 -765 67 140 -765 -765 -765 240 -765 -765 -765 240 -765 -765 -765 240 -765 -765 167 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTKTTTG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.1e+003 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTKTTTG MEME-4 regular expression -------------------------------------------------------------------------------- TTT[GT]TTTG -------------------------------------------------------------------------------- Time 8.92 secs. ******************************************************************************** ******************************************************************************** MOTIF GAAAAATW MEME-5 width = 8 sites = 2 llr = 23 E-value = 1.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAAAAATW MEME-5 Description -------------------------------------------------------------------------------- Simplified A :aaaaa:5 pos.-specific C :::::::: probability G a::::::: matrix T ::::::a5 bits 2.4 ****** 2.2 ****** 1.9 ****** 1.7 ******* Relative 1.4 ******** Entropy 1.2 ******** (16.9 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GAAAAATA consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAAAATW MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr15:90895413-90895433 10 4.05e-06 ATGGACAGA GAAAAATT CTA chr1:156389911-156389931 5 8.44e-06 GGGG GAAAAATA TGGCACCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAAAATW MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:90895413-90895433 4e-06 9_[+5]_3 chr1:156389911-156389931 8.4e-06 4_[+5]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAAAATW MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAAAAATW width=8 seqs=2 chr15:90895413-90895433 ( 10) GAAAAATT 1 chr1:156389911-156389931 ( 5) GAAAAATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAAAATW MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.81663 E= 1.0e+004 -765 -765 167 -765 228 -765 -765 -765 228 -765 -765 -765 228 -765 -765 -765 228 -765 -765 -765 228 -765 -765 -765 -765 -765 -765 240 128 -765 -765 140 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAAAATW MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.0e+004 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.500000 0.000000 0.000000 0.500000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAAAATW MEME-5 regular expression -------------------------------------------------------------------------------- GAAAAAT[AT] -------------------------------------------------------------------------------- Time 11.65 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:2242016-2242036 6.62e-01 20 chr19:4328509-4328529 9.21e-01 20 chr1:27018814-27018834 5.38e-01 20 chr18:61034952-61034972 9.56e-01 20 chr2:17699759-17699779 9.91e-01 20 chr19:40728069-40728089 9.71e-01 20 chr4:26322313-26322333 6.34e-01 20 chrX:129300192-129300212 9.90e-01 20 chr19:1123195-1123215 7.52e-01 20 chr14:94492637-94492657 9.69e-01 20 chr19:3721545-3721565 9.85e-01 20 chr12:75724149-75724169 5.36e-01 20 chr19:2841382-2841402 7.26e-01 20 chr13:20532760-20532780 7.52e-01 20 chr11:107798943-10779896 4.94e-01 20 chr10:28592077-28592097 9.78e-01 20 chr19:1041114-1041134 9.63e-01 20 chr15:99396592-99396612 9.28e-01 20 chr2:11606389-11606409 5.66e-01 20 chr3:126423012-126423032 4.98e-01 20 chr19:4342915-4342935 7.30e-01 20 chr19:2945036-2945056 6.49e-02 20 chr19:1133725-1133745 5.33e-02 5_[+1(2.12e-05)]_7 chr2:71454319-71454339 3.13e-01 20 chr5:32313338-32313358 1.99e-02 4_[+1(8.40e-06)]_8 chr19:1507881-1507901 9.44e-01 20 chr19:47327785-47327805 9.83e-01 20 chr10:104155363-10415538 9.85e-01 20 chr6:80247188-80247208 7.36e-03 20 chr19:19249333-19249353 1.20e-02 11_[+1(4.18e-05)]_1 chr6:139696564-139696584 9.26e-01 20 chr11:13299090-13299110 2.26e-01 20 chr1:33647721-33647741 9.85e-01 20 chr11:14913841-14913861 8.77e-01 20 chr1:154973365-154973385 6.79e-01 20 chr21:43299166-43299186 3.00e-01 20 chr21:40684402-40684422 9.93e-01 20 chr3:107241730-107241750 4.31e-01 20 chr20:40247106-40247126 5.12e-01 20 chr17:47866554-47866574 1.61e-01 20 chr19:46149481-46149501 3.04e-01 20 chr1:25757249-25757269 2.96e-01 20 chr8:33330702-33330722 9.96e-01 20 chr16:67217606-67217626 8.79e-02 20 chr19:33166146-33166166 3.30e-01 20 chr19:46148935-46148955 7.18e-01 20 chr20:17663003-17663023 4.67e-01 20 chr1:51985160-51985180 3.58e-01 20 chr2:65283406-65283426 1.65e-01 20 chr9:80911947-80911967 1.99e-02 20 chr1:62902171-62902191 1.52e-04 4_[+3(6.44e-06)]_8 chr15:44487580-44487600 6.60e-01 20 chr12:14927207-14927227 2.01e-02 10_[+3(1.25e-05)]_2 chrX:46988627-46988647 1.09e-01 20 chr10:101190540-10119056 3.02e-02 20 chr12:6960497-6960517 4.23e-01 20 chr16:4852974-4852994 1.10e-02 10_[+2(7.13e-05)]_2 chr15:86338201-86338221 3.63e-01 20 chr3:127309664-127309684 9.29e-02 20 chr5:96144117-96144137 5.96e-01 20 chr4:175204402-175204422 2.40e-01 20 chr1:167691145-167691165 7.81e-01 20 chr22:20004442-20004462 8.05e-02 20 chr5:58423644-58423664 9.12e-01 20 chr3:131100564-131100584 8.91e-02 20 chr19:17420258-17420278 4.90e-02 20 chr9:34989564-34989584 9.85e-01 20 chr3:119813820-119813840 7.58e-03 1_[+2(8.02e-06)]_11 chr16:58663870-58663890 9.08e-01 20 chr19:18654431-18654451 2.82e-01 20 chr6:82957517-82957537 1.68e-02 12_[+3(3.58e-05)] chr16:22202051-22202071 1.41e-02 4_[+3(5.19e-05)]_8 chr6:159527931-159527951 4.88e-01 20 chr19:45873926-45873946 9.47e-01 20 chr3:149530945-149530965 9.01e-03 20 chr3:56591144-56591164 3.35e-01 20 chr16:90143797-90143817 1.77e-01 20 chr8:87354692-87354712 9.37e-01 20 chr19:7294410-7294430 9.52e-01 20 chr19:42580194-42580214 3.90e-01 20 chr4:170948544-170948564 4.43e-01 20 chr10:80828624-80828644 5.10e-01 20 chr19:3035724-3035744 4.99e-01 20 chr15:64673753-64673773 1.14e-01 20 chr22:35696188-35696208 8.99e-01 20 chrX:47415636-47415656 5.38e-02 20 chr1:6845247-6845267 5.67e-01 20 chr5:98109238-98109258 2.41e-02 20 chr8:145159283-145159303 9.55e-01 20 chr6:53409901-53409921 9.23e-01 20 chr3:93698914-93698934 4.97e-02 20 chr17:76237712-76237732 3.21e-01 20 chr19:41082702-41082722 6.92e-01 20 chr14:23755453-23755473 9.82e-01 20 chr17:39943180-39943200 3.10e-01 20 chr19:6372645-6372665 9.65e-01 20 chr19:13906082-13906102 7.49e-01 20 chr3:114866171-114866191 3.55e-01 20 chr18:12407955-12407975 9.53e-01 20 chr13:107188080-10718810 9.99e-01 20 chr3:185826984-185827004 6.97e-01 20 chr22:21400114-21400134 3.93e-02 20 chr18:56325609-56325629 7.68e-01 20 chr6:37225476-37225496 9.10e-03 20 chr16:1393233-1393253 5.37e-02 20 chr11:66725918-66725938 4.81e-01 20 chr17:40346532-40346552 8.52e-01 20 chr19:49224046-49224066 3.86e-01 20 chr22:37582476-37582496 8.04e-01 20 chr11:560889-560909 1.05e-01 20 chr14:78083273-78083293 9.93e-01 20 chr4:2845506-2845526 6.37e-01 20 chr1:220263235-220263255 2.96e-02 20 chr19:41120576-41120596 9.92e-01 20 chr4:468021-468041 6.32e-01 20 chr19:50372954-50372974 3.36e-02 5_[+1(9.10e-05)]_7 chr20:56293671-56293691 9.02e-01 20 chr8:144450902-144450922 1.69e-01 20 chr16:2264949-2264969 9.99e-01 20 chr2:74685464-74685484 8.62e-02 20 chr10:102790945-10279096 8.23e-01 20 chr16:30621763-30621783 9.17e-01 20 chr1:10270465-10270485 3.42e-02 3_[+2(7.13e-05)]_9 chr5:139017189-139017209 9.66e-01 20 chr11:46867854-46867874 2.81e-02 20 chr1:38397553-38397573 8.77e-02 20 chr19:8478121-8478141 5.44e-01 20 chr14:73393097-73393117 2.45e-01 20 chr2:42068094-42068114 9.92e-01 20 chr11:4629555-4629575 9.98e-01 20 chr17:74667926-74667946 1.60e-01 20 chr10:99393270-99393290 3.25e-03 20 chr19:13944562-13944582 1.26e-01 20 chr19:7198157-7198177 9.24e-01 20 chr7:856180-856200 7.88e-01 20 chr1:225965463-225965483 1.52e-02 20 chr6:62996201-62996221 1.25e-02 20 chr1:150669808-150669828 1.13e-01 20 chr19:21541719-21541739 3.44e-02 12_[+1(7.32e-05)] chr6:53412842-53412862 5.71e-01 20 chr1:206138185-206138205 2.89e-01 20 chr3:100211359-100211379 1.95e-02 6_[+1(6.13e-05)]_6 chr17:27139579-27139599 1.64e-01 20 chr22:40440229-40440249 1.99e-01 20 chr1:85527928-85527948 7.08e-01 20 chr4:775682-775702 2.53e-02 5_[+1(2.12e-05)]_7 chr6:108879811-108879831 7.09e-01 20 chr1:227127844-227127864 6.91e-02 5_[+2(7.13e-05)]_7 chr12:53473244-53473264 9.17e-01 20 chr3:50605222-50605242 9.54e-01 20 chr21:35014567-35014587 1.18e-01 20 chr11:61349004-61349024 9.49e-01 20 chr17:80416467-80416487 9.10e-01 20 chr9:37465698-37465718 2.82e-02 1_[+3(6.78e-05)]_11 chr19:37808630-37808650 8.15e-01 20 chr2:232646057-232646077 7.59e-01 20 chr17:7307505-7307525 9.17e-02 20 chr1:150601705-150601725 5.39e-01 20 chr12:49504715-49504735 6.92e-01 20 chr15:90118622-90118642 9.81e-01 20 chr12:104531941-10453196 2.42e-02 20 chr6:52529124-52529144 1.66e-01 20 chr19:14228666-14228686 3.62e-01 20 chrX:49125709-49125729 3.56e-03 11_[+3(5.19e-05)]_1 chr15:85923675-85923695 5.76e-01 20 chr19:3344321-3344341 9.05e-01 20 chr18:9095474-9095494 5.52e-01 20 chr3:98620626-98620646 3.08e-02 12_[+1(9.10e-05)] chr7:5609877-5609897 5.06e-05 4_[+2(8.02e-06)]_8 chr20:56004859-56004879 1.81e-03 20 chr19:17858384-17858404 9.99e-01 20 chr15:83478267-83478287 1.43e-01 20 chr1:28562532-28562552 1.00e+00 20 chr17:8534269-8534289 9.18e-01 20 chr19:36606306-36606326 7.11e-02 2_[+2(7.13e-05)]_10 chr19:17377996-17378016 3.19e-02 20 chr3:148804358-148804378 7.82e-01 20 chr19:38893693-38893713 8.22e-01 20 chr3:27410971-27410991 1.97e-02 4_[+1(2.12e-05)]_8 chr4:48782471-48782491 2.30e-02 20 chr5:145583071-145583091 8.10e-03 7_[+3(1.25e-05)]_5 chr11:65601305-65601325 2.68e-02 20 chr1:153940246-153940266 1.28e-02 20 chr15:90895413-90895433 1.77e-02 9_[+5(4.05e-06)]_3 chr4:166248734-166248754 2.48e-02 8_[+1(4.18e-05)]_4 chr10:52384394-52384414 9.75e-01 20 chr17:38574287-38574307 7.78e-04 2_[+4(7.16e-06)]_10 chr1:43312152-43312172 3.95e-01 20 chr1:27019661-27019681 9.31e-01 20 chr13:26796006-26796026 7.53e-01 20 chr11:34379636-34379656 7.08e-01 20 chr2:73460466-73460486 4.58e-01 20 chr19:54641314-54641334 8.99e-01 20 chr13:29293183-29293203 2.97e-02 12_[+2(4.04e-05)] chr11:64795187-64795207 3.95e-03 6_[+3(2.27e-05)]_6 chr6:112194730-112194750 2.99e-01 20 chr6:122720630-122720650 9.44e-02 20 chr7:23053793-23053813 8.85e-01 20 chr19:20959032-20959052 8.36e-01 20 chr12:96252676-96252696 4.19e-02 1_[+1(7.32e-05)]_11 chr7:30066398-30066418 1.77e-01 20 chr19:21105995-21106015 7.07e-02 7_[+1(7.32e-05)]_5 chr17:79196862-79196882 7.86e-02 20 chr18:14132519-14132539 9.11e-01 20 chr19:10491345-10491365 2.14e-03 [+4(2.70e-06)]_12 chr9:129987439-129987459 4.58e-01 20 chr20:44441143-44441163 9.53e-01 20 chr16:1728179-1728199 7.23e-01 20 chr19:8408215-8408235 6.53e-01 20 chr12:109535818-10953583 1.55e-01 20 chr11:2721366-2721386 1.06e-03 8_[+2(7.13e-05)]_4 chr14:58765100-58765120 1.93e-01 20 chr1:150602209-150602229 2.56e-01 20 chr1:156391564-156391584 9.91e-01 20 chr19:18303793-18303813 9.60e-05 9_[+3(6.44e-06)]_3 chr11:119205135-11920515 1.61e-02 20 chr1:36851689-36851709 9.61e-01 20 chr21:47604581-47604601 5.69e-02 20 chr15:89631522-89631542 2.02e-02 20 chr12:110011485-11001150 8.54e-02 20 chr4:52709182-52709202 9.88e-01 20 chr1:156389911-156389931 1.82e-02 4_[+5(8.44e-06)]_8 chr6:153304257-153304277 8.03e-02 20 chr19:36193385-36193405 5.29e-01 20 chr11:124981579-12498159 9.71e-02 20 chr19:21950424-21950444 8.91e-02 20 chr2:73298521-73298541 3.94e-02 20 chr19:4471722-4471742 2.43e-02 20 chr12:2999973-2999993 1.67e-02 10_[+1(4.18e-05)]_2 chr16:84538314-84538334 4.20e-02 1_[+1(7.32e-05)]_11 chr1:51972399-51972419 8.79e-01 20 chr14:74960350-74960370 2.21e-02 20 chr10:101380282-10138030 3.21e-02 7_[+5(2.14e-05)]_5 chr19:2900777-2900797 1.40e-02 6_[+1(7.32e-05)]_6 chr15:43213093-43213113 9.97e-01 20 chr19:18315130-18315150 1.19e-02 3_[+1(2.12e-05)]_9 chr19:17414289-17414309 9.84e-01 20 chr12:125534253-12553427 5.40e-03 10_[+2(4.04e-05)]_2 chr1:153895588-153895608 1.61e-02 20 chr1:151763144-151763164 7.75e-01 20 chr14:51561938-51561958 2.25e-03 6_[+2(7.13e-05)]_6 chr5:43313839-43313859 9.66e-01 20 chr11:17298192-17298212 8.49e-01 20 chr15:40697888-40697908 6.53e-01 20 chr9:131940636-131940656 9.98e-01 20 chr22:42840259-42840279 5.62e-01 20 chr17:41323134-41323154 1.13e-01 20 chr22:37172271-37172291 3.35e-02 20 chr10:25013646-25013666 4.67e-02 3_[+1(9.10e-05)]_9 chr10:58121085-58121105 2.46e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n09.farnam.hpc.yale.internal ********************************************************************************