******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/SMC3.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr1:9516006-9516026 1.0000 20 chr15:78488160-78488180 1.0000 20 chr11:2326731-2326751 1.0000 20 chr17:47472546-47472566 1.0000 20 chr1:157125972-157125992 1.0000 20 chr8:142441731-142441751 1.0000 20 chr22:31151565-31151585 1.0000 20 chr15:78400837-78400857 1.0000 20 chr3:39231469-39231489 1.0000 20 chr9:35882410-35882430 1.0000 20 chr2:86054696-86054716 1.0000 20 chrX:73075537-73075557 1.0000 20 chr12:94926751-94926771 1.0000 20 chr20:34583100-34583120 1.0000 20 chr2:175327681-175327701 1.0000 20 chr8:42547817-42547837 1.0000 20 chr17:74462238-74462258 1.0000 20 chr11:19575462-19575482 1.0000 20 chr12:53746563-53746583 1.0000 20 chrX:46656222-46656242 1.0000 20 chr1:43539471-43539491 1.0000 20 chr1:17563713-17563733 1.0000 20 chr1:66719187-66719207 1.0000 20 chr11:116976848-11697686 1.0000 20 chr12:6574820-6574840 1.0000 20 chr11:33992730-33992750 1.0000 20 chr20:55957007-55957027 1.0000 20 chr19:6125709-6125729 1.0000 20 chr14:61492130-61492150 1.0000 20 chr6:108863387-108863407 1.0000 20 chr15:101547334-10154735 1.0000 20 chr6:35551770-35551790 1.0000 20 chr3:38008961-38008981 1.0000 20 chr1:1057648-1057668 1.0000 20 chr22:19718331-19718351 1.0000 20 chr7:155391613-155391633 1.0000 20 chr1:25015208-25015228 1.0000 20 chr17:41654195-41654215 1.0000 20 chr19:18169346-18169366 1.0000 20 chr5:40688419-40688439 1.0000 20 chr6:139685693-139685713 1.0000 20 chr1:15455196-15455216 1.0000 20 chr11:2441047-2441067 1.0000 20 chr22:45831734-45831754 1.0000 20 chr3:14302848-14302868 1.0000 20 chr6:144426221-144426241 1.0000 20 chr11:10757501-10757521 1.0000 20 chr13:97762338-97762358 1.0000 20 chr9:14353640-14353660 1.0000 20 chr7:3194693-3194713 1.0000 20 chr10:11767356-11767376 1.0000 20 chr12:53815528-53815548 1.0000 20 chr7:26101468-26101488 1.0000 20 chr4:146155440-146155460 1.0000 20 chr1:33761247-33761267 1.0000 20 chr1:120218361-120218381 1.0000 20 chr13:30706869-30706889 1.0000 20 chr1:202541041-202541061 1.0000 20 chr2:238480798-238480818 1.0000 20 chr9:87312614-87312634 1.0000 20 chr6:29816005-29816025 1.0000 20 chr3:141179133-141179153 1.0000 20 chr1:84908072-84908092 1.0000 20 chr21:39728118-39728138 1.0000 20 chr19:50441089-50441109 1.0000 20 chr7:36331250-36331270 1.0000 20 chr10:125319026-12531904 1.0000 20 chr4:38677332-38677352 1.0000 20 chr12:50038500-50038520 1.0000 20 chr12:7372430-7372450 1.0000 20 chr1:94095212-94095232 1.0000 20 chr20:796841-796861 1.0000 20 chr16:761883-761903 1.0000 20 chr15:43517842-43517862 1.0000 20 chr12:5131793-5131813 1.0000 20 chr13:27933514-27933534 1.0000 20 chr3:98321110-98321130 1.0000 20 chr5:151038670-151038690 1.0000 20 chr12:53278758-53278778 1.0000 20 chr20:937229-937249 1.0000 20 chr16:81657166-81657186 1.0000 20 chr11:63246461-63246481 1.0000 20 chr8:80935998-80936018 1.0000 20 chr2:232422743-232422763 1.0000 20 chr5:153847410-153847430 1.0000 20 chr2:238421577-238421597 1.0000 20 chr5:71819974-71819994 1.0000 20 chr17:3908084-3908104 1.0000 20 chr17:19350557-19350577 1.0000 20 chr17:71366194-71366214 1.0000 20 chr11:120105906-12010592 1.0000 20 chr9:124887619-124887639 1.0000 20 chr15:55940754-55940774 1.0000 20 chrX:12912377-12912397 1.0000 20 chr11:15122829-15122849 1.0000 20 chr14:105442614-10544263 1.0000 20 chr1:31384347-31384367 1.0000 20 chr11:75156549-75156569 1.0000 20 chr5:10452989-10453009 1.0000 20 chr1:21581876-21581896 1.0000 20 chr11:75243589-75243609 1.0000 20 chr11:117924282-11792430 1.0000 20 chr10:11557805-11557825 1.0000 20 chr3:9344431-9344451 1.0000 20 chr2:16938618-16938638 1.0000 20 chr6:41431224-41431244 1.0000 20 chr1:41882927-41882947 1.0000 20 chr21:32953256-32953276 1.0000 20 chr1:27611341-27611361 1.0000 20 chr18:44731485-44731505 1.0000 20 chr4:159651285-159651305 1.0000 20 chr10:90692604-90692624 1.0000 20 chr21:40105986-40106006 1.0000 20 chr17:36505177-36505197 1.0000 20 chr3:32551795-32551815 1.0000 20 chr12:104503119-10450313 1.0000 20 chr17:6955543-6955563 1.0000 20 chr9:125113023-125113043 1.0000 20 chr1:27989814-27989834 1.0000 20 chr4:6329166-6329186 1.0000 20 chr3:167883601-167883621 1.0000 20 chr2:42097038-42097058 1.0000 20 chr22:23520811-23520831 1.0000 20 chr3:50609718-50609738 1.0000 20 chr1:184951448-184951468 1.0000 20 chr2:198992544-198992564 1.0000 20 chr19:10755611-10755631 1.0000 20 chr5:173400337-173400357 1.0000 20 chr1:206310538-206310558 1.0000 20 chr9:136859680-136859700 1.0000 20 chr4:89945384-89945404 1.0000 20 chr14:77342534-77342554 1.0000 20 chr11:19585741-19585761 1.0000 20 chr2:42313768-42313788 1.0000 20 chr20:25046564-25046584 1.0000 20 chr8:96261097-96261117 1.0000 20 chr3:136732893-136732913 1.0000 20 chr1:23425389-23425409 1.0000 20 chr12:123437026-12343704 1.0000 20 chr1:110319630-110319650 1.0000 20 chr11:74991383-74991403 1.0000 20 chr12:27006869-27006889 1.0000 20 chr10:125727363-12572738 1.0000 20 chr18:33864834-33864854 1.0000 20 chr8:37709123-37709143 1.0000 20 chr8:37773876-37773896 1.0000 20 chr11:129201867-12920188 1.0000 20 chr4:94685960-94685980 1.0000 20 chr22:20144677-20144697 1.0000 20 chr11:120043125-12004314 1.0000 20 chr2:38059912-38059932 1.0000 20 chr11:110072236-11007225 1.0000 20 chr15:35370875-35370895 1.0000 20 chr8:82147630-82147650 1.0000 20 chr10:108555556-10855557 1.0000 20 chr14:23246849-23246869 1.0000 20 chr11:46330260-46330280 1.0000 20 chr11:117714874-11771489 1.0000 20 chr21:39591159-39591179 1.0000 20 chr16:68738412-68738432 1.0000 20 chr11:128500439-12850045 1.0000 20 chr16:81437306-81437326 1.0000 20 chr6:52027909-52027929 1.0000 20 chr14:32542975-32542995 1.0000 20 chr7:86941798-86941818 1.0000 20 chr13:50181363-50181383 1.0000 20 chr1:9170987-9171007 1.0000 20 chr11:111648169-11164818 1.0000 20 chr17:29852532-29852552 1.0000 20 chr1:16514405-16514425 1.0000 20 chr2:192555820-192555840 1.0000 20 chr9:140122122-140122142 1.0000 20 chr2:231476253-231476273 1.0000 20 chr7:36024946-36024966 1.0000 20 chrX:12832754-12832774 1.0000 20 chr9:96975941-96975961 1.0000 20 chr11:100447357-10044737 1.0000 20 chr1:28417889-28417909 1.0000 20 chr8:8130881-8130901 1.0000 20 chr11:1859115-1859135 1.0000 20 chr15:67239228-67239248 1.0000 20 chr1:43379207-43379227 1.0000 20 chr19:17814867-17814887 1.0000 20 chr18:49194695-49194715 1.0000 20 chr15:99826812-99826832 1.0000 20 chr22:46512519-46512539 1.0000 20 chr3:124407855-124407875 1.0000 20 chr15:78533442-78533462 1.0000 20 chr10:33297801-33297821 1.0000 20 chr7:98439547-98439567 1.0000 20 chr13:96056708-96056728 1.0000 20 chr1:156355544-156355564 1.0000 20 chr22:23470780-23470800 1.0000 20 chr8:42660559-42660579 1.0000 20 chr22:26857344-26857364 1.0000 20 chr16:22012474-22012494 1.0000 20 chr5:139523961-139523981 1.0000 20 chr3:120514064-120514084 1.0000 20 chr8:28277207-28277227 1.0000 20 chr1:53744088-53744108 1.0000 20 chr11:129793367-12979338 1.0000 20 chr8:109930815-109930835 1.0000 20 chr2:193027338-193027358 1.0000 20 chr19:43033576-43033596 1.0000 20 chr11:36724346-36724366 1.0000 20 chr1:214502339-214502359 1.0000 20 chr13:103568543-10356856 1.0000 20 chr6:30796436-30796456 1.0000 20 chr14:99984928-99984948 1.0000 20 chr1:93459849-93459869 1.0000 20 chr6:167555845-167555865 1.0000 20 chr6:139540520-139540540 1.0000 20 chr5:72887113-72887133 1.0000 20 chr14:76517335-76517355 1.0000 20 chr19:44249609-44249629 1.0000 20 chr14:69927005-69927025 1.0000 20 chr4:160096855-160096875 1.0000 20 chr16:50244608-50244628 1.0000 20 chr20:47274422-47274442 1.0000 20 chr15:37398760-37398780 1.0000 20 chr22:50468869-50468889 1.0000 20 chr12:15685501-15685521 1.0000 20 chr1:200457995-200458015 1.0000 20 chr1:182564962-182564982 1.0000 20 chr17:33325390-33325410 1.0000 20 chr3:98048555-98048575 1.0000 20 chr3:56736702-56736722 1.0000 20 chr2:29419861-29419881 1.0000 20 chr2:11618226-11618246 1.0000 20 chr1:46993859-46993879 1.0000 20 chr9:36555996-36556016 1.0000 20 chr8:8608391-8608411 1.0000 20 chr10:115559539-11555955 1.0000 20 chr5:111887300-111887320 1.0000 20 chr16:86050125-86050145 1.0000 20 chr15:43577926-43577946 1.0000 20 chr21:35882997-35883017 1.0000 20 chr1:110855377-110855397 1.0000 20 chrX:37684647-37684667 1.0000 20 chr7:28893971-28893991 1.0000 20 chrX:9963976-9963996 1.0000 20 chr5:149940678-149940698 1.0000 20 chr7:137588581-137588601 1.0000 20 chr10:91020291-91020311 1.0000 20 chr3:69210930-69210950 1.0000 20 chr8:142397048-142397068 1.0000 20 chr7:50485899-50485919 1.0000 20 chr1:46502903-46502923 1.0000 20 chr12:5112353-5112373 1.0000 20 chr7:105697557-105697577 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_SMC3/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/SMC3.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.199 C 0.318 G 0.302 T 0.181 Background letter frequencies (from file dataset with add-one prior applied): A 0.199 C 0.318 G 0.302 T 0.181 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCCMCCTG MEME-1 width = 8 sites = 98 llr = 643 E-value = 3.1e-076 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCMCCTG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1::5::31 pos.-specific C :9a56a:: probability G 8:::1::8 matrix T 2:::3:71 bits 2.5 2.2 2.0 1.7 * Relative 1.5 * ** Entropy 1.2 ** ** (9.5 bits) 1.0 **** *** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCCACCTG consensus CT A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCMCCTG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:93459849-93459869 9 3.36e-05 aaaagact gccacctg gtgg chr3:124407855-124407875 5 3.36e-05 CGCT GCCACCTG CTGCCCTC chr5:173400337-173400357 10 3.36e-05 GCTGTGACT GCCACCTG GTG chr1:184951448-184951468 10 3.36e-05 GGGAAGAGT GCCACCTG CTG chr9:125113023-125113043 8 3.36e-05 CTATGCT GCCACCTG GTGGC chr3:9344431-9344451 11 3.36e-05 GGGGAAGAGC GCCACCTG GC chr5:40688419-40688439 12 3.36e-05 GAGCAACACT GCCACCTG G chr15:78488160-78488180 12 3.36e-05 GGGCTGCCCT GCCACCTG C chr3:98048555-98048575 8 5.27e-05 ttcaggc gccatctg ctgga chr2:42313768-42313788 9 5.27e-05 GAGGTGTT GCCATCTG GTGC chr2:238480798-238480818 12 5.27e-05 ATGCTGGAGC GCCATCTG G chr15:101547334-10154735 13 5.27e-05 GGCGCTCATC GCCATCTG chr14:61492130-61492150 7 5.27e-05 TACATC GCCATCTG CTGGTC chr22:31151565-31151585 5 5.27e-05 AGCT GCCATCTG GTGGCTGG chr17:29852532-29852552 12 1.06e-04 GGCCTGGAGC GCCCCCTG C chr11:128500439-12850045 9 1.06e-04 TCAATGGC GCCCCCTG AAGG chr11:46330260-46330280 13 1.06e-04 GGCTGGCCCT GCCCCCTG chr10:125727363-12572738 6 1.06e-04 AGCCT GCCCCCTG CTGGCTG chr9:136859680-136859700 10 1.06e-04 GTACCTGCT GCCCCCTG GTG chr11:75243589-75243609 10 1.06e-04 GCCTCTGCT GCCCCCTG CTG chr17:71366194-71366214 8 1.06e-04 ATTTGGC GCCCCCTG CTGGC chr9:14353640-14353660 8 1.06e-04 CTGCTGC GCCCCCTG GTGTC chr1:17563713-17563733 6 1.06e-04 ATTCC GCCCCCTG GTGGCAG chr1:43539471-43539491 11 1.06e-04 GGGAGTTGCC GCCCCCTG GT chr1:157125972-157125992 12 1.06e-04 AGGGGCCAGC GCCCCCTG G chr7:28893971-28893991 9 1.37e-04 GTTCGGGC GCCCTCTG GCGC chr1:110855377-110855397 12 1.37e-04 CGTCTCTCCT GCCCTCTG C chr14:69927005-69927025 13 1.37e-04 AAGCTTGTGA GCCCTCTG chr2:231476253-231476273 9 1.37e-04 TCTACACT GCCCTCTG GTGG chr12:123437026-12343704 11 1.37e-04 CAGTTCTGGT GCCCTCTG CT chr8:96261097-96261117 7 1.37e-04 CAAAGT GCCCTCTG GTGGTC chr1:206310538-206310558 7 1.37e-04 GCCTGC GCCCTCTG CTGACT chr1:41882927-41882947 7 1.37e-04 CATGGT GCCCTCTG GTGGCA chr11:117924282-11792430 10 1.37e-04 AACCTGAGC GCCCTCTG GTG chr7:36331250-36331270 11 1.37e-04 ATGCACATGC GCCCTCTG GT chr11:10757501-10757521 8 1.37e-04 CAGTGCA GCCCTCTG CTGCC chr22:45831734-45831754 1 1.37e-04 . GCCCTCTG CTGGTGACCA chr11:2441047-2441067 9 1.37e-04 GTGACGCT GCCCTCTG GCGG chr11:19575462-19575482 10 1.37e-04 AATTGTGCT GCCCTCTG CTG chr8:142441731-142441751 12 1.37e-04 CTCTTGCGCT GCCCTCTG G chr1:9516006-9516026 10 1.37e-04 GAGTGTGGC GCCCTCTG GCG chr8:8608391-8608411 5 1.74e-04 TACA GCCACCAG GTGGCGCA chr8:8130881-8130901 3 1.74e-04 TG GCCACCAG AGGGCTATAC chr6:52027909-52027929 7 1.74e-04 AAATTT GCCACCAG ATGACA chr4:159651285-159651305 5 1.74e-04 AAAT GCCACCAG GGGACAGC chr14:105442614-10544263 1 1.74e-04 . GCCACCAG GGGGCAGCCT chr5:153847410-153847430 4 1.74e-04 ATG GCCACCAG GTGGCGCCC chr16:81657166-81657186 1 1.74e-04 . GCCACCAG GTGGCAGTGA chr16:761883-761903 7 1.74e-04 CACGCC GCCACCAG AGGGCG chr20:796841-796861 1 1.74e-04 . GCCACCAG GAGGCGCAGG chr17:74462238-74462258 1 1.74e-04 . GCCACCAG GGGGTGCCAT chr4:160096855-160096875 8 3.71e-04 CCAGTCT GCCACCTT GTGGT chr19:43033576-43033596 13 3.71e-04 GTGCAATGTC TCCCCCTG chr3:136732893-136732913 11 3.71e-04 GGCGTCTGGC GCCACCTT GT chr1:27611341-27611361 2 3.71e-04 C TCCCCCTG GTGGTGACTA chr3:38008961-38008981 6 3.71e-04 GCTCC TCCCCCTG GTGGCTA chr9:35882410-35882430 11 3.71e-04 GCTCCTGGGC TCCCCCTG GT chr1:214502339-214502359 12 4.01e-04 GGCCTTTGTC GCCATCTT C chr4:94685960-94685980 13 4.01e-04 AGCAAATACT GCCATCTT chr18:33864834-33864854 7 4.55e-04 AAGTCT ACCACCTG CTGGCA chr2:11618226-11618246 3 4.90e-04 TC TCCACCAG GTGGCGCACT chr1:28417889-28417909 5 4.90e-04 CACC TCCACCAG AGGGAGCC chr1:9170987-9171007 2 4.90e-04 G TCCACCAG GGGGCAGGAG chr11:2326731-2326751 4 4.90e-04 CCG TCCACCAG GGGGTGCCA chr19:6125709-6125729 5 5.35e-04 AGGA GCCCCCTT CTGGTCTT chr8:28277207-28277227 12 5.53e-04 GGGAAGAAGC GCCCTCTT G chrX:12912377-12912397 7 6.26e-04 CCAAGC GCCACCTA GTGGGG chr4:38677332-38677352 3 6.26e-04 GC GCCACCTA CTGGTTCTGC chr1:200457995-200458015 7 6.74e-04 CTCAAC ACCCCCTG GTGGAG chr2:38059912-38059932 6 6.74e-04 atggc accccctg gtgtCCA chr13:50181363-50181383 12 7.73e-04 GAGCAAGCCT GCCACCAT G chr1:110319630-110319650 2 8.65e-04 G GCCAGCAG GGGGCAGAAC chr3:141179133-141179153 1 8.65e-04 . GCCAGCAG AGGTCACTGC chr20:55957007-55957027 2 8.65e-04 G GCCAGCAG ATGGCGCGAA chr2:175327681-175327701 1 8.65e-04 . gccagcag agggcagagt chr19:44249609-44249629 6 9.31e-04 CTTTC ACCACCAG GGGGTGT chr2:193027338-193027358 3 9.31e-04 GC GCCCCCTA CTGGTACAGC chr1:23425389-23425409 3 9.31e-04 GA ACCACCAG ATGGAGCCCA chr5:139523961-139523981 6 1.05e-03 TCGGA GACCCCTG CGCCCCC chr15:78533442-78533462 12 1.05e-03 GGCCTCTGCT GACCCCTG C chr12:53815528-53815548 8 1.09e-03 CTCTGCT GACCTCTG GTGGT chr21:39728118-39728138 9 1.28e-03 GCTCTAGC GCCACCTC GTGG chr15:43577926-43577946 12 1.39e-03 AGGCAGCAGC TCCCTCTT G chr7:50485899-50485919 4 1.50e-03 CCC TCCACCTA GTGGTGAAG chr1:43379207-43379227 4 1.50e-03 ACA GACACCAG AGAGAGCAA chr22:23470780-23470800 11 1.79e-03 GTCCTGGGGT GCCCCCTC CT chr6:41431224-41431244 13 1.79e-03 gggggcctca ggcccctg chr3:56736702-56736722 9 1.91e-03 AGCTTAAT TCCAGCAG AGGG chr20:47274422-47274442 7 1.91e-03 ACAATG TCCAGCAG AGGGCA chr16:81437306-81437326 1 1.91e-03 . TCCAGCAG AGGGCGCCCC chr12:27006869-27006889 6 1.91e-03 ggcca tccagcag gtggagc chr21:32953256-32953276 4 1.91e-03 AGA GCACTCTG ATGACACCT chr7:3194693-3194713 8 1.91e-03 aaaccaa gcactctg tgccc chr7:36024946-36024966 6 2.24e-03 CAGTG GGCACCAG GAGGCAG chr22:19718331-19718351 5 2.24e-03 GGCA GGCACCAG AGGGCGCT chr13:27933514-27933534 13 2.52e-03 AGACTACAGC TCCACCTC chr1:202541041-202541061 10 2.99e-03 TCGTCCAGC ACCCCCTA GAG chr1:33761247-33761267 1 3.36e-03 . ACCCCCAT TGTGGCCACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCMCCTG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:93459849-93459869 3.4e-05 8_[+1]_4 chr3:124407855-124407875 3.4e-05 4_[+1]_8 chr5:173400337-173400357 3.4e-05 9_[+1]_3 chr1:184951448-184951468 3.4e-05 9_[+1]_3 chr9:125113023-125113043 3.4e-05 7_[+1]_5 chr3:9344431-9344451 3.4e-05 10_[+1]_2 chr5:40688419-40688439 3.4e-05 11_[+1]_1 chr15:78488160-78488180 3.4e-05 11_[+1]_1 chr3:98048555-98048575 5.3e-05 7_[+1]_5 chr2:42313768-42313788 5.3e-05 8_[+1]_4 chr2:238480798-238480818 5.3e-05 11_[+1]_1 chr15:101547334-10154735 5.3e-05 12_[+1] chr14:61492130-61492150 5.3e-05 6_[+1]_6 chr22:31151565-31151585 5.3e-05 4_[+1]_8 chr17:29852532-29852552 0.00011 11_[+1]_1 chr11:128500439-12850045 0.00011 8_[+1]_4 chr11:46330260-46330280 0.00011 12_[+1] chr10:125727363-12572738 0.00011 5_[+1]_7 chr9:136859680-136859700 0.00011 9_[+1]_3 chr11:75243589-75243609 0.00011 9_[+1]_3 chr17:71366194-71366214 0.00011 7_[+1]_5 chr9:14353640-14353660 0.00011 7_[+1]_5 chr1:17563713-17563733 0.00011 5_[+1]_7 chr1:43539471-43539491 0.00011 10_[+1]_2 chr1:157125972-157125992 0.00011 11_[+1]_1 chr7:28893971-28893991 0.00014 8_[+1]_4 chr1:110855377-110855397 0.00014 11_[+1]_1 chr14:69927005-69927025 0.00014 12_[+1] chr2:231476253-231476273 0.00014 8_[+1]_4 chr12:123437026-12343704 0.00014 10_[+1]_2 chr8:96261097-96261117 0.00014 6_[+1]_6 chr1:206310538-206310558 0.00014 6_[+1]_6 chr1:41882927-41882947 0.00014 6_[+1]_6 chr11:117924282-11792430 0.00014 9_[+1]_3 chr7:36331250-36331270 0.00014 10_[+1]_2 chr11:10757501-10757521 0.00014 7_[+1]_5 chr22:45831734-45831754 0.00014 [+1]_12 chr11:2441047-2441067 0.00014 8_[+1]_4 chr11:19575462-19575482 0.00014 9_[+1]_3 chr8:142441731-142441751 0.00014 11_[+1]_1 chr1:9516006-9516026 0.00014 9_[+1]_3 chr8:8608391-8608411 0.00017 4_[+1]_8 chr8:8130881-8130901 0.00017 2_[+1]_10 chr6:52027909-52027929 0.00017 6_[+1]_6 chr4:159651285-159651305 0.00017 4_[+1]_8 chr14:105442614-10544263 0.00017 [+1]_12 chr5:153847410-153847430 0.00017 3_[+1]_9 chr16:81657166-81657186 0.00017 [+1]_12 chr16:761883-761903 0.00017 6_[+1]_6 chr20:796841-796861 0.00017 [+1]_12 chr17:74462238-74462258 0.00017 [+1]_12 chr4:160096855-160096875 0.00037 7_[+1]_5 chr19:43033576-43033596 0.00037 12_[+1] chr3:136732893-136732913 0.00037 10_[+1]_2 chr1:27611341-27611361 0.00037 1_[+1]_11 chr3:38008961-38008981 0.00037 5_[+1]_7 chr9:35882410-35882430 0.00037 10_[+1]_2 chr1:214502339-214502359 0.0004 11_[+1]_1 chr4:94685960-94685980 0.0004 12_[+1] chr18:33864834-33864854 0.00046 6_[+1]_6 chr2:11618226-11618246 0.00049 2_[+1]_10 chr1:28417889-28417909 0.00049 4_[+1]_8 chr1:9170987-9171007 0.00049 1_[+1]_11 chr11:2326731-2326751 0.00049 3_[+1]_9 chr19:6125709-6125729 0.00053 4_[+1]_8 chr8:28277207-28277227 0.00055 11_[+1]_1 chrX:12912377-12912397 0.00063 6_[+1]_6 chr4:38677332-38677352 0.00063 2_[+1]_10 chr1:200457995-200458015 0.00067 6_[+1]_6 chr2:38059912-38059932 0.00067 5_[+1]_7 chr13:50181363-50181383 0.00077 11_[+1]_1 chr1:110319630-110319650 0.00086 1_[+1]_11 chr3:141179133-141179153 0.00086 [+1]_12 chr20:55957007-55957027 0.00086 1_[+1]_11 chr2:175327681-175327701 0.00086 [+1]_12 chr19:44249609-44249629 0.00093 5_[+1]_7 chr2:193027338-193027358 0.00093 2_[+1]_10 chr1:23425389-23425409 0.00093 2_[+1]_10 chr5:139523961-139523981 0.0011 5_[+1]_7 chr15:78533442-78533462 0.0011 11_[+1]_1 chr12:53815528-53815548 0.0011 7_[+1]_5 chr21:39728118-39728138 0.0013 8_[+1]_4 chr15:43577926-43577946 0.0014 11_[+1]_1 chr7:50485899-50485919 0.0015 3_[+1]_9 chr1:43379207-43379227 0.0015 3_[+1]_9 chr22:23470780-23470800 0.0018 10_[+1]_2 chr6:41431224-41431244 0.0018 12_[+1] chr3:56736702-56736722 0.0019 8_[+1]_4 chr20:47274422-47274442 0.0019 6_[+1]_6 chr16:81437306-81437326 0.0019 [+1]_12 chr12:27006869-27006889 0.0019 5_[+1]_7 chr21:32953256-32953276 0.0019 3_[+1]_9 chr7:3194693-3194713 0.0019 7_[+1]_5 chr7:36024946-36024966 0.0022 5_[+1]_7 chr22:19718331-19718351 0.0022 4_[+1]_8 chr13:27933514-27933534 0.0025 12_[+1] chr1:202541041-202541061 0.003 9_[+1]_3 chr1:33761247-33761267 0.0034 [+1]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCMCCTG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCMCCTG width=8 seqs=98 chr1:93459849-93459869 ( 9) GCCACCTG 1 chr3:124407855-124407875 ( 5) GCCACCTG 1 chr5:173400337-173400357 ( 10) GCCACCTG 1 chr1:184951448-184951468 ( 10) GCCACCTG 1 chr9:125113023-125113043 ( 8) GCCACCTG 1 chr3:9344431-9344451 ( 11) GCCACCTG 1 chr5:40688419-40688439 ( 12) GCCACCTG 1 chr15:78488160-78488180 ( 12) GCCACCTG 1 chr3:98048555-98048575 ( 8) GCCATCTG 1 chr2:42313768-42313788 ( 9) GCCATCTG 1 chr2:238480798-238480818 ( 12) GCCATCTG 1 chr15:101547334-10154735 ( 13) GCCATCTG 1 chr14:61492130-61492150 ( 7) GCCATCTG 1 chr22:31151565-31151585 ( 5) GCCATCTG 1 chr17:29852532-29852552 ( 12) GCCCCCTG 1 chr11:128500439-12850045 ( 9) GCCCCCTG 1 chr11:46330260-46330280 ( 13) GCCCCCTG 1 chr10:125727363-12572738 ( 6) GCCCCCTG 1 chr9:136859680-136859700 ( 10) GCCCCCTG 1 chr11:75243589-75243609 ( 10) GCCCCCTG 1 chr17:71366194-71366214 ( 8) GCCCCCTG 1 chr9:14353640-14353660 ( 8) GCCCCCTG 1 chr1:17563713-17563733 ( 6) GCCCCCTG 1 chr1:43539471-43539491 ( 11) GCCCCCTG 1 chr1:157125972-157125992 ( 12) GCCCCCTG 1 chr7:28893971-28893991 ( 9) GCCCTCTG 1 chr1:110855377-110855397 ( 12) GCCCTCTG 1 chr14:69927005-69927025 ( 13) GCCCTCTG 1 chr2:231476253-231476273 ( 9) GCCCTCTG 1 chr12:123437026-12343704 ( 11) GCCCTCTG 1 chr8:96261097-96261117 ( 7) GCCCTCTG 1 chr1:206310538-206310558 ( 7) GCCCTCTG 1 chr1:41882927-41882947 ( 7) GCCCTCTG 1 chr11:117924282-11792430 ( 10) GCCCTCTG 1 chr7:36331250-36331270 ( 11) GCCCTCTG 1 chr11:10757501-10757521 ( 8) GCCCTCTG 1 chr22:45831734-45831754 ( 1) GCCCTCTG 1 chr11:2441047-2441067 ( 9) GCCCTCTG 1 chr11:19575462-19575482 ( 10) GCCCTCTG 1 chr8:142441731-142441751 ( 12) GCCCTCTG 1 chr1:9516006-9516026 ( 10) GCCCTCTG 1 chr8:8608391-8608411 ( 5) GCCACCAG 1 chr8:8130881-8130901 ( 3) GCCACCAG 1 chr6:52027909-52027929 ( 7) GCCACCAG 1 chr4:159651285-159651305 ( 5) GCCACCAG 1 chr14:105442614-10544263 ( 1) GCCACCAG 1 chr5:153847410-153847430 ( 4) GCCACCAG 1 chr16:81657166-81657186 ( 1) GCCACCAG 1 chr16:761883-761903 ( 7) GCCACCAG 1 chr20:796841-796861 ( 1) GCCACCAG 1 chr17:74462238-74462258 ( 1) GCCACCAG 1 chr4:160096855-160096875 ( 8) GCCACCTT 1 chr19:43033576-43033596 ( 13) TCCCCCTG 1 chr3:136732893-136732913 ( 11) GCCACCTT 1 chr1:27611341-27611361 ( 2) TCCCCCTG 1 chr3:38008961-38008981 ( 6) TCCCCCTG 1 chr9:35882410-35882430 ( 11) TCCCCCTG 1 chr1:214502339-214502359 ( 12) GCCATCTT 1 chr4:94685960-94685980 ( 13) GCCATCTT 1 chr18:33864834-33864854 ( 7) ACCACCTG 1 chr2:11618226-11618246 ( 3) TCCACCAG 1 chr1:28417889-28417909 ( 5) TCCACCAG 1 chr1:9170987-9171007 ( 2) TCCACCAG 1 chr11:2326731-2326751 ( 4) TCCACCAG 1 chr19:6125709-6125729 ( 5) GCCCCCTT 1 chr8:28277207-28277227 ( 12) GCCCTCTT 1 chrX:12912377-12912397 ( 7) GCCACCTA 1 chr4:38677332-38677352 ( 3) GCCACCTA 1 chr1:200457995-200458015 ( 7) ACCCCCTG 1 chr2:38059912-38059932 ( 6) ACCCCCTG 1 chr13:50181363-50181383 ( 12) GCCACCAT 1 chr1:110319630-110319650 ( 2) GCCAGCAG 1 chr3:141179133-141179153 ( 1) GCCAGCAG 1 chr20:55957007-55957027 ( 2) GCCAGCAG 1 chr2:175327681-175327701 ( 1) GCCAGCAG 1 chr19:44249609-44249629 ( 6) ACCACCAG 1 chr2:193027338-193027358 ( 3) GCCCCCTA 1 chr1:23425389-23425409 ( 3) ACCACCAG 1 chr5:139523961-139523981 ( 6) GACCCCTG 1 chr15:78533442-78533462 ( 12) GACCCCTG 1 chr12:53815528-53815548 ( 8) GACCTCTG 1 chr21:39728118-39728138 ( 9) GCCACCTC 1 chr15:43577926-43577946 ( 12) TCCCTCTT 1 chr7:50485899-50485919 ( 4) TCCACCTA 1 chr1:43379207-43379227 ( 4) GACACCAG 1 chr22:23470780-23470800 ( 11) GCCCCCTC 1 chr6:41431224-41431244 ( 13) GGCCCCTG 1 chr3:56736702-56736722 ( 9) TCCAGCAG 1 chr20:47274422-47274442 ( 7) TCCAGCAG 1 chr16:81437306-81437326 ( 1) TCCAGCAG 1 chr12:27006869-27006889 ( 6) TCCAGCAG 1 chr21:32953256-32953276 ( 4) GCACTCTG 1 chr7:3194693-3194713 ( 8) GCACTCTG 1 chr7:36024946-36024966 ( 6) GGCACCAG 1 chr22:19718331-19718351 ( 5) GGCACCAG 1 chr13:27933514-27933534 ( 13) TCCACCTC 1 chr1:202541041-202541061 ( 10) ACCCCCTA 1 chr1:33761247-33761267 ( 1) ACCCCCAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCMCCTG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 6.63385 E= 3.1e-076 -148 -1326 136 -25 -229 155 -330 -1326 -328 162 -1326 -1326 141 56 -1326 -1326 -1326 97 -189 71 -1326 165 -1326 -1326 57 -1326 -1326 196 -196 -337 145 -98 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCMCCTG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 98 E= 3.1e-076 0.071429 0.000000 0.775510 0.153061 0.040816 0.928571 0.030612 0.000000 0.020408 0.979592 0.000000 0.000000 0.530612 0.469388 0.000000 0.000000 0.000000 0.622449 0.081633 0.295918 0.000000 1.000000 0.000000 0.000000 0.295918 0.000000 0.000000 0.704082 0.051020 0.030612 0.826531 0.091837 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCMCCTG MEME-1 regular expression -------------------------------------------------------------------------------- GCC[AC][CT]C[TA]G -------------------------------------------------------------------------------- Time 3.24 secs. ******************************************************************************** ******************************************************************************** MOTIF AGRKGGCR MEME-2 width = 8 sites = 48 llr = 361 E-value = 4.1e-033 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGRKGGCR MEME-2 Description -------------------------------------------------------------------------------- Simplified A a:5:::15 pos.-specific C ::::::8: probability G :a56a9:5 matrix T :::4:1:: bits 2.5 2.2 * 2.0 * 1.7 ** Relative 1.5 ** ** Entropy 1.2 ** ** (10.8 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AGAGGGCG consensus GT A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRKGGCR MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr10:115559539-11555955 1 3.33e-05 . AGATGGCA GAAGAGGGAA chr11:36724346-36724366 6 3.33e-05 CCACA AGATGGCA ATGTTGC chr16:68738412-68738432 10 3.33e-05 ACGCCCAGC AGAGGGCA CCA chr1:21581876-21581896 3 3.33e-05 CC AGAGGGCA GCCTTTGGCA chr9:124887619-124887639 1 3.33e-05 . AGAGGGCA GTGCTGCCCC chr1:94095212-94095232 3 3.33e-05 CT AGAGGGCA GAGCTTAACA chr12:50038500-50038520 8 3.33e-05 GCCCAGC AGAGGGCA CTAGT chr1:15455196-15455216 3 3.33e-05 CT AGATGGCA GGACAATACG chr7:155391613-155391633 3 3.33e-05 GC AGATGGCA GCACCAAGGC chrX:73075537-73075557 6 3.33e-05 CCACC AGATGGCA GCATAAA chr3:39231469-39231489 2 3.33e-05 C AGAGGGCA GACTTGCCAT chr17:33325390-33325410 3 8.39e-05 GG AGATGGCG GTGGCAGCCT chr8:37709123-37709143 7 8.39e-05 GCCAGA AGATGGCG CCCTCT chr11:15122829-15122849 4 8.39e-05 ACC AGAGGGCG GACTAAGCC chr12:5131793-5131813 10 8.39e-05 CTGCCCAGC AGATGGCG AGC chr12:7372430-7372450 3 8.39e-05 GC AGATGGCG CCAAAGGACC chr13:97762338-97762358 1 8.39e-05 . AGAGGGCG GCAAAGGACG chr7:105697557-105697577 3 1.35e-04 CA AGGTGGCA CCGTGACACT chr12:15685501-15685521 7 1.35e-04 ccctca agggggca ctagtg chr5:72887113-72887133 5 1.35e-04 CACC AGGTGGCA GTATTATC chr11:1859115-1859135 10 1.35e-04 ATGAGCAGC AGGGGGCA GCA chr9:87312614-87312634 8 1.35e-04 CACCAGG AGGGGGCA GCGCA chr1:25015208-25015228 10 1.35e-04 CCTTCCACT AGGTGGCA CCC chr8:142397048-142397068 2 2.11e-04 G AGGGGGCG CCCGTGTGGC chr21:35882997-35883017 11 2.11e-04 CACAGGCAGG AGGGGGCG CT chr14:99984928-99984948 5 2.11e-04 CAGC AGGGGGCG CCAGTCGC chr16:22012474-22012494 8 2.11e-04 GGCCGCC AGGGGGCG CTGCG chr11:110072236-11007225 5 2.11e-04 CACC AGGTGGCG GCATGAGA chr12:53278758-53278778 11 2.11e-04 AATGCCCTCC AGGGGGCG CC chr1:1057648-1057668 3 2.11e-04 GC AGGTGGCG TCTCTCCCTC chr6:35551770-35551790 4 2.11e-04 ACA AGGGGGCG CAAGAATCC chr20:34583100-34583120 2 2.11e-04 C AGGGGGCG CCTGGGCCTG chr2:86054696-86054716 4 2.11e-04 ACC AGGTGGCG CGGTGGACC chr11:129793367-12979338 8 2.64e-04 CAACGCT AGAGGGAG CCAAA chr5:10452989-10453009 8 2.64e-04 TGACACT AGATGGAG ACATT chr11:19585741-19585761 3 2.95e-04 GC AGGGGGAA GCATAAACAC chr6:30796436-30796456 8 3.64e-04 TCCCACC AGGGGGAG CCCTT chr10:108555556-10855557 6 3.64e-04 acagc agggggag gcagtgt chr5:151038670-151038690 5 3.64e-04 CAGC AGGGGGAG CCCTAACC chr17:6955543-6955563 8 4.13e-04 ggacact agatgtcg ctgct chr1:43379207-43379227 12 4.65e-04 CAGACACCAG AGAGAGCA A chr11:117714874-11771489 4 4.65e-04 ACC AGGGGTCA GAACGACTG chr15:35370875-35370895 2 4.65e-04 T AGAGAGCA GTATTGCCTA chr14:77342534-77342554 1 4.94e-04 . AGAGGGTG CTCCAACCCC chr2:42097038-42097058 5 6.46e-04 CAGC AGGGGTCG CTGATGCC chr11:63246461-63246481 4 6.46e-04 ACT AGAGGGCT CCCCATACC chr14:32542975-32542995 6 7.44e-04 CCAGC AGGGGGTG TAGCTGC chr1:84908072-84908092 1 8.61e-04 . AGGAGGCA GTGTTGTGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRKGGCR MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:115559539-11555955 3.3e-05 [+2]_12 chr11:36724346-36724366 3.3e-05 5_[+2]_7 chr16:68738412-68738432 3.3e-05 9_[+2]_3 chr1:21581876-21581896 3.3e-05 2_[+2]_10 chr9:124887619-124887639 3.3e-05 [+2]_12 chr1:94095212-94095232 3.3e-05 2_[+2]_10 chr12:50038500-50038520 3.3e-05 7_[+2]_5 chr1:15455196-15455216 3.3e-05 2_[+2]_10 chr7:155391613-155391633 3.3e-05 2_[+2]_10 chrX:73075537-73075557 3.3e-05 5_[+2]_7 chr3:39231469-39231489 3.3e-05 1_[+2]_11 chr17:33325390-33325410 8.4e-05 2_[+2]_10 chr8:37709123-37709143 8.4e-05 6_[+2]_6 chr11:15122829-15122849 8.4e-05 3_[+2]_9 chr12:5131793-5131813 8.4e-05 9_[+2]_3 chr12:7372430-7372450 8.4e-05 2_[+2]_10 chr13:97762338-97762358 8.4e-05 [+2]_12 chr7:105697557-105697577 0.00013 2_[+2]_10 chr12:15685501-15685521 0.00013 6_[+2]_6 chr5:72887113-72887133 0.00013 4_[+2]_8 chr11:1859115-1859135 0.00013 9_[+2]_3 chr9:87312614-87312634 0.00013 7_[+2]_5 chr1:25015208-25015228 0.00013 9_[+2]_3 chr8:142397048-142397068 0.00021 1_[+2]_11 chr21:35882997-35883017 0.00021 10_[+2]_2 chr14:99984928-99984948 0.00021 4_[+2]_8 chr16:22012474-22012494 0.00021 7_[+2]_5 chr11:110072236-11007225 0.00021 4_[+2]_8 chr12:53278758-53278778 0.00021 10_[+2]_2 chr1:1057648-1057668 0.00021 2_[+2]_10 chr6:35551770-35551790 0.00021 3_[+2]_9 chr20:34583100-34583120 0.00021 1_[+2]_11 chr2:86054696-86054716 0.00021 3_[+2]_9 chr11:129793367-12979338 0.00026 7_[+2]_5 chr5:10452989-10453009 0.00026 7_[+2]_5 chr11:19585741-19585761 0.0003 2_[+2]_10 chr6:30796436-30796456 0.00036 7_[+2]_5 chr10:108555556-10855557 0.00036 5_[+2]_7 chr5:151038670-151038690 0.00036 4_[+2]_8 chr17:6955543-6955563 0.00041 7_[+2]_5 chr1:43379207-43379227 0.00047 11_[+2]_1 chr11:117714874-11771489 0.00047 3_[+2]_9 chr15:35370875-35370895 0.00047 1_[+2]_11 chr14:77342534-77342554 0.00049 [+2]_12 chr2:42097038-42097058 0.00065 4_[+2]_8 chr11:63246461-63246481 0.00065 3_[+2]_9 chr14:32542975-32542995 0.00074 5_[+2]_7 chr1:84908072-84908092 0.00086 [+2]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRKGGCR MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGRKGGCR width=8 seqs=48 chr10:115559539-11555955 ( 1) AGATGGCA 1 chr11:36724346-36724366 ( 6) AGATGGCA 1 chr16:68738412-68738432 ( 10) AGAGGGCA 1 chr1:21581876-21581896 ( 3) AGAGGGCA 1 chr9:124887619-124887639 ( 1) AGAGGGCA 1 chr1:94095212-94095232 ( 3) AGAGGGCA 1 chr12:50038500-50038520 ( 8) AGAGGGCA 1 chr1:15455196-15455216 ( 3) AGATGGCA 1 chr7:155391613-155391633 ( 3) AGATGGCA 1 chrX:73075537-73075557 ( 6) AGATGGCA 1 chr3:39231469-39231489 ( 2) AGAGGGCA 1 chr17:33325390-33325410 ( 3) AGATGGCG 1 chr8:37709123-37709143 ( 7) AGATGGCG 1 chr11:15122829-15122849 ( 4) AGAGGGCG 1 chr12:5131793-5131813 ( 10) AGATGGCG 1 chr12:7372430-7372450 ( 3) AGATGGCG 1 chr13:97762338-97762358 ( 1) AGAGGGCG 1 chr7:105697557-105697577 ( 3) AGGTGGCA 1 chr12:15685501-15685521 ( 7) AGGGGGCA 1 chr5:72887113-72887133 ( 5) AGGTGGCA 1 chr11:1859115-1859135 ( 10) AGGGGGCA 1 chr9:87312614-87312634 ( 8) AGGGGGCA 1 chr1:25015208-25015228 ( 10) AGGTGGCA 1 chr8:142397048-142397068 ( 2) AGGGGGCG 1 chr21:35882997-35883017 ( 11) AGGGGGCG 1 chr14:99984928-99984948 ( 5) AGGGGGCG 1 chr16:22012474-22012494 ( 8) AGGGGGCG 1 chr11:110072236-11007225 ( 5) AGGTGGCG 1 chr12:53278758-53278778 ( 11) AGGGGGCG 1 chr1:1057648-1057668 ( 3) AGGTGGCG 1 chr6:35551770-35551790 ( 4) AGGGGGCG 1 chr20:34583100-34583120 ( 2) AGGGGGCG 1 chr2:86054696-86054716 ( 4) AGGTGGCG 1 chr11:129793367-12979338 ( 8) AGAGGGAG 1 chr5:10452989-10453009 ( 8) AGATGGAG 1 chr11:19585741-19585761 ( 3) AGGGGGAA 1 chr6:30796436-30796456 ( 8) AGGGGGAG 1 chr10:108555556-10855557 ( 6) AGGGGGAG 1 chr5:151038670-151038690 ( 5) AGGGGGAG 1 chr17:6955543-6955563 ( 8) AGATGTCG 1 chr1:43379207-43379227 ( 12) AGAGAGCA 1 chr11:117714874-11771489 ( 4) AGGGGTCA 1 chr15:35370875-35370895 ( 2) AGAGAGCA 1 chr14:77342534-77342554 ( 1) AGAGGGTG 1 chr2:42097038-42097058 ( 5) AGGGGTCG 1 chr11:63246461-63246481 ( 4) AGAGGGCT 1 chr14:32542975-32542995 ( 6) AGGGGGTG 1 chr1:84908072-84908092 ( 1) AGGAGGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRKGGCR MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.98246 E= 4.1e-033 233 -1223 -1223 -1223 -1223 -1223 173 -1223 133 -1223 73 -1223 -325 -1223 105 96 -225 -1223 167 -1223 -1223 -1223 164 -154 -67 139 -1223 -212 120 -1223 79 -312 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRKGGCR MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 48 E= 4.1e-033 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.020833 0.000000 0.625000 0.354167 0.041667 0.000000 0.958333 0.000000 0.000000 0.000000 0.937500 0.062500 0.125000 0.833333 0.000000 0.041667 0.458333 0.000000 0.520833 0.020833 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRKGGCR MEME-2 regular expression -------------------------------------------------------------------------------- AG[AG][GT]GGC[GA] -------------------------------------------------------------------------------- Time 3.90 secs. ******************************************************************************** ******************************************************************************** MOTIF ACTAWTWT MEME-3 width = 8 sites = 2 llr = 23 E-value = 8.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACTAWTWT MEME-3 Description -------------------------------------------------------------------------------- Simplified A a::a5:5: pos.-specific C :a:::::: probability G :::::::: matrix T ::a:5a5a bits 2.5 * * * 2.2 * ** * * 2.0 * ** * * 1.7 **** * * Relative 1.5 ******** Entropy 1.2 ******** (16.5 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ACTAATAT consensus T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTAWTWT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr5:149940678-149940698 4 7.83e-06 GGC ACTATTAT CCTAGCCTC chr3:98321110-98321130 7 7.83e-06 TCACCT ACTAATTT GCAAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTAWTWT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:149940678-149940698 7.8e-06 3_[+3]_9 chr3:98321110-98321130 7.8e-06 6_[+3]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTAWTWT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACTAWTWT width=8 seqs=2 chr5:149940678-149940698 ( 4) ACTATTAT 1 chr3:98321110-98321130 ( 7) ACTAATTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTAWTWT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.6653 E= 8.3e+003 232 -765 -765 -765 -765 165 -765 -765 -765 -765 -765 246 232 -765 -765 -765 132 -765 -765 146 -765 -765 -765 246 132 -765 -765 146 -765 -765 -765 246 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTAWTWT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 8.3e+003 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTAWTWT MEME-3 regular expression -------------------------------------------------------------------------------- ACTA[AT]T[AT]T -------------------------------------------------------------------------------- Time 5.24 secs. ******************************************************************************** ******************************************************************************** MOTIF TTKAWTTT MEME-4 width = 8 sites = 2 llr = 24 E-value = 1.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTKAWTTT MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::a5::: pos.-specific C :::::::: probability G ::5::::: matrix T aa5:5aaa bits 2.5 ** *** 2.2 ** * *** 2.0 ** * *** 1.7 ** * *** Relative 1.5 ** ***** Entropy 1.2 ** ***** (17.1 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTGAATTT consensus T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKAWTTT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr18:49194695-49194715 3 1.27e-06 gc tttatttt tactttcatt chr6:139685693-139685713 7 7.10e-06 GCAAAT TTGAATTT ACAGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKAWTTT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr18:49194695-49194715 1.3e-06 2_[+4]_10 chr6:139685693-139685713 7.1e-06 6_[+4]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKAWTTT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTKAWTTT width=8 seqs=2 chr18:49194695-49194715 ( 3) TTTATTTT 1 chr6:139685693-139685713 ( 7) TTGAATTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKAWTTT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.6653 E= 1.5e+003 -765 -765 -765 246 -765 -765 -765 246 -765 -765 73 146 232 -765 -765 -765 132 -765 -765 146 -765 -765 -765 246 -765 -765 -765 246 -765 -765 -765 246 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKAWTTT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.5e+003 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.500000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKAWTTT MEME-4 regular expression -------------------------------------------------------------------------------- TT[GT]A[AT]TTT -------------------------------------------------------------------------------- Time 5.95 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTTMGTG MEME-5 width = 8 sites = 2 llr = 23 E-value = 2.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTMGTG MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::5::: pos.-specific C ::::5::: probability G :::::a:a matrix T aaaa::a: bits 2.5 **** * 2.2 **** * 2.0 **** * 1.7 **** *** Relative 1.5 **** *** Entropy 1.2 **** *** (16.8 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTTTAGTG consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTMGTG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:111648169-11164818 4 3.53e-06 AGA TTTTAGTG AGAATAGGA chr13:103568543-10356856 12 9.16e-06 AGACCGGAGC TTTTCGTG T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTMGTG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:111648169-11164818 3.5e-06 3_[+5]_9 chr13:103568543-10356856 9.2e-06 11_[+5]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTMGTG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTMGTG width=8 seqs=2 chr11:111648169-11164818 ( 4) TTTTAGTG 1 chr13:103568543-10356856 ( 12) TTTTCGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTMGTG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.6653 E= 2.4e+003 -765 -765 -765 246 -765 -765 -765 246 -765 -765 -765 246 -765 -765 -765 246 132 65 -765 -765 -765 -765 172 -765 -765 -765 -765 246 -765 -765 172 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTMGTG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.4e+003 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.500000 0.500000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTMGTG MEME-5 regular expression -------------------------------------------------------------------------------- TTTT[AC]GTG -------------------------------------------------------------------------------- Time 6.57 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:9516006-9516026 9.71e-02 20 chr15:78488160-78488180 8.39e-02 11_[+1(3.36e-05)]_1 chr11:2326731-2326751 3.14e-02 20 chr17:47472546-47472566 4.39e-01 20 chr1:157125972-157125992 3.56e-02 20 chr8:142441731-142441751 6.30e-02 20 chr22:31151565-31151585 3.61e-03 4_[+1(5.27e-05)]_8 chr15:78400837-78400857 5.79e-01 20 chr3:39231469-39231489 2.39e-02 1_[+2(3.33e-05)]_11 chr9:35882410-35882430 2.99e-01 20 chr2:86054696-86054716 1.15e-01 20 chrX:73075537-73075557 2.08e-02 5_[+2(3.33e-05)]_7 chr12:94926751-94926771 6.79e-01 20 chr20:34583100-34583120 1.27e-01 20 chr2:175327681-175327701 5.02e-03 6_[+2(3.33e-05)]_6 chr8:42547817-42547837 9.45e-01 20 chr17:74462238-74462258 1.29e-02 20 chr11:19575462-19575482 1.60e-02 20 chr12:53746563-53746583 7.95e-01 20 chrX:46656222-46656242 7.82e-01 20 chr1:43539471-43539491 6.19e-02 20 chr1:17563713-17563733 2.27e-02 20 chr1:66719187-66719207 1.56e-01 20 chr11:116976848-11697686 3.47e-01 20 chr12:6574820-6574840 6.20e-01 20 chr11:33992730-33992750 3.26e-01 20 chr20:55957007-55957027 9.86e-03 7_[+2(8.39e-05)]_5 chr19:6125709-6125729 1.20e-02 20 chr14:61492130-61492150 5.00e-02 6_[+1(5.27e-05)]_6 chr6:108863387-108863407 8.35e-01 20 chr15:101547334-10154735 8.41e-02 12_[+1(5.27e-05)] chr6:35551770-35551790 1.38e-01 20 chr3:38008961-38008981 8.94e-02 20 chr1:1057648-1057668 8.97e-02 20 chr22:19718331-19718351 2.11e-02 10_[+2(8.39e-05)]_2 chr7:155391613-155391633 2.39e-02 2_[+2(3.33e-05)]_10 chr1:25015208-25015228 9.66e-03 20 chr17:41654195-41654215 9.75e-01 20 chr19:18169346-18169366 9.98e-01 20 chr5:40688419-40688439 8.39e-02 11_[+1(3.36e-05)]_1 chr6:139685693-139685713 4.32e-04 6_[+4(7.10e-06)]_6 chr1:15455196-15455216 4.88e-02 2_[+2(3.33e-05)]_10 chr11:2441047-2441067 9.85e-02 20 chr22:45831734-45831754 2.11e-02 20 chr3:14302848-14302868 8.23e-01 20 chr6:144426221-144426241 4.59e-01 20 chr11:10757501-10757521 8.64e-02 20 chr13:97762338-97762358 1.52e-01 [+2(8.39e-05)]_12 chr9:14353640-14353660 5.50e-02 20 chr7:3194693-3194713 2.26e-01 20 chr10:11767356-11767376 2.35e-01 20 chr12:53815528-53815548 9.25e-02 20 chr7:26101468-26101488 3.98e-01 20 chr4:146155440-146155460 4.03e-01 20 chr1:33761247-33761267 1.38e-01 20 chr1:120218361-120218381 5.77e-02 20 chr13:30706869-30706889 1.09e-01 20 chr1:202541041-202541061 7.06e-01 20 chr2:238480798-238480818 4.90e-02 11_[+1(5.27e-05)]_1 chr9:87312614-87312634 1.19e-01 20 chr6:29816005-29816025 2.83e-01 20 chr3:141179133-141179153 1.97e-02 20 chr1:84908072-84908092 1.79e-02 20 chr21:39728118-39728138 2.98e-01 20 chr19:50441089-50441109 1.00e+00 20 chr7:36331250-36331270 1.20e-01 20 chr10:125319026-12531904 9.89e-01 20 chr4:38677332-38677352 3.25e-02 20 chr12:50038500-50038520 4.73e-02 7_[+2(3.33e-05)]_5 chr12:7372430-7372450 1.29e-01 2_[+2(8.39e-05)]_10 chr1:94095212-94095232 6.25e-02 2_[+2(3.33e-05)]_10 chr20:796841-796861 1.54e-02 20 chr16:761883-761903 3.63e-03 12_[+2(8.39e-05)] chr15:43517842-43517862 8.19e-01 20 chr12:5131793-5131813 7.17e-02 9_[+2(8.39e-05)]_3 chr13:27933514-27933534 4.31e-01 20 chr3:98321110-98321130 1.18e-03 6_[+3(7.83e-06)]_6 chr5:151038670-151038690 2.43e-01 20 chr12:53278758-53278778 1.15e-01 20 chr20:937229-937249 7.45e-01 20 chr16:81657166-81657186 1.05e-03 20 chr11:63246461-63246481 1.52e-01 20 chr8:80935998-80936018 1.78e-01 20 chr2:232422743-232422763 7.24e-01 20 chr5:153847410-153847430 5.28e-03 20 chr2:238421577-238421597 8.00e-01 20 chr5:71819974-71819994 3.63e-02 20 chr17:3908084-3908104 9.00e-01 20 chr17:19350557-19350577 2.02e-01 20 chr17:71366194-71366214 2.13e-02 20 chr11:120105906-12010592 9.05e-01 20 chr9:124887619-124887639 2.39e-02 [+2(3.33e-05)]_12 chr15:55940754-55940774 3.71e-01 20 chrX:12912377-12912397 1.11e-01 20 chr11:15122829-15122849 5.09e-02 3_[+2(8.39e-05)]_9 chr14:105442614-10544263 5.08e-03 20 chr1:31384347-31384367 7.31e-01 20 chr11:75156549-75156569 8.76e-01 20 chr5:10452989-10453009 3.83e-02 20 chr1:21581876-21581896 1.73e-02 2_[+2(3.33e-05)]_10 chr11:75243589-75243609 7.62e-02 20 chr11:117924282-11792430 3.48e-02 20 chr10:11557805-11557825 8.11e-01 20 chr3:9344431-9344451 5.36e-02 10_[+1(3.36e-05)]_2 chr2:16938618-16938638 9.46e-01 20 chr6:41431224-41431244 1.63e-01 20 chr1:41882927-41882947 4.88e-03 20 chr21:32953256-32953276 3.91e-02 20 chr1:27611341-27611361 4.45e-03 20 chr18:44731485-44731505 5.16e-01 20 chr4:159651285-159651305 4.50e-02 20 chr10:90692604-90692624 2.34e-01 20 chr21:40105986-40106006 2.88e-01 20 chr17:36505177-36505197 6.34e-01 20 chr3:32551795-32551815 8.31e-01 20 chr12:104503119-10450313 1.47e-01 20 chr17:6955543-6955563 1.57e-02 20 chr9:125113023-125113043 3.55e-02 7_[+1(3.36e-05)]_5 chr1:27989814-27989834 3.67e-01 20 chr4:6329166-6329186 9.82e-01 20 chr3:167883601-167883621 5.37e-01 20 chr2:42097038-42097058 2.11e-01 20 chr22:23520811-23520831 2.76e-01 20 chr3:50609718-50609738 8.16e-01 20 chr1:184951448-184951468 3.83e-02 9_[+1(3.36e-05)]_3 chr2:198992544-198992564 9.94e-01 20 chr19:10755611-10755631 8.46e-01 20 chr5:173400337-173400357 1.09e-02 9_[+1(3.36e-05)]_3 chr1:206310538-206310558 8.70e-02 20 chr9:136859680-136859700 1.16e-01 20 chr4:89945384-89945404 4.00e-01 20 chr14:77342534-77342554 1.49e-01 20 chr11:19585741-19585761 1.19e-01 20 chr2:42313768-42313788 8.91e-04 8_[+1(5.27e-05)]_4 chr20:25046564-25046584 1.42e-01 20 chr8:96261097-96261117 2.11e-02 20 chr3:136732893-136732913 1.71e-01 20 chr1:23425389-23425409 1.91e-02 20 chr12:123437026-12343704 4.56e-03 20 chr1:110319630-110319650 1.65e-02 20 chr11:74991383-74991403 8.83e-01 20 chr12:27006869-27006889 4.88e-02 20 chr10:125727363-12572738 1.39e-01 20 chr18:33864834-33864854 1.87e-01 20 chr8:37709123-37709143 5.86e-02 6_[+2(8.39e-05)]_6 chr8:37773876-37773896 3.78e-01 20 chr11:129201867-12920188 5.34e-01 20 chr4:94685960-94685980 5.88e-02 20 chr22:20144677-20144697 9.12e-01 20 chr11:120043125-12004314 7.80e-01 20 chr2:38059912-38059932 1.16e-01 20 chr11:110072236-11007225 1.27e-01 20 chr15:35370875-35370895 1.07e-02 20 chr8:82147630-82147650 9.56e-01 20 chr10:108555556-10855557 2.33e-01 20 chr14:23246849-23246869 9.35e-01 20 chr11:46330260-46330280 1.66e-01 20 chr11:117714874-11771489 3.69e-01 20 chr21:39591159-39591179 3.46e-01 20 chr16:68738412-68738432 4.87e-02 9_[+2(3.33e-05)]_3 chr11:128500439-12850045 1.22e-01 20 chr16:81437306-81437326 2.04e-02 6_[+2(8.39e-05)]_6 chr6:52027909-52027929 1.97e-02 20 chr14:32542975-32542995 1.53e-01 20 chr7:86941798-86941818 8.40e-01 20 chr13:50181363-50181383 3.03e-01 20 chr1:9170987-9171007 1.05e-02 20 chr11:111648169-11164818 6.44e-04 3_[+5(3.53e-06)]_9 chr17:29852532-29852552 1.45e-01 20 chr1:16514405-16514425 9.08e-01 20 chr2:192555820-192555840 8.20e-02 20 chr9:140122122-140122142 6.25e-01 20 chr2:231476253-231476273 1.70e-02 20 chr7:36024946-36024966 7.64e-02 20 chrX:12832754-12832774 5.91e-01 20 chr9:96975941-96975961 9.71e-01 20 chr11:100447357-10044737 9.94e-02 20 chr1:28417889-28417909 1.65e-02 20 chr8:8130881-8130901 9.10e-03 20 chr11:1859115-1859135 6.70e-02 20 chr15:67239228-67239248 9.03e-01 20 chr1:43379207-43379227 4.56e-02 20 chr19:17814867-17814887 3.60e-01 20 chr18:49194695-49194715 9.39e-06 2_[+4(1.27e-06)]_10 chr15:99826812-99826832 8.66e-01 20 chr22:46512519-46512539 9.99e-01 20 chr3:124407855-124407875 8.67e-02 4_[+1(3.36e-05)]_8 chr15:78533442-78533462 2.62e-01 20 chr10:33297801-33297821 4.06e-01 20 chr7:98439547-98439567 9.90e-01 20 chr13:96056708-96056728 6.42e-01 20 chr1:156355544-156355564 1.14e-02 20 chr22:23470780-23470800 4.05e-01 20 chr8:42660559-42660579 3.71e-01 20 chr22:26857344-26857364 2.79e-01 20 chr16:22012474-22012494 1.19e-01 20 chr5:139523961-139523981 5.28e-01 20 chr3:120514064-120514084 1.30e-02 20 chr8:28277207-28277227 1.66e-01 20 chr1:53744088-53744108 1.74e-01 20 chr11:129793367-12979338 2.27e-01 20 chr8:109930815-109930835 8.22e-01 20 chr2:193027338-193027358 1.08e-01 20 chr19:43033576-43033596 4.21e-02 20 chr11:36724346-36724366 1.11e-02 5_[+2(3.33e-05)]_7 chr1:214502339-214502359 1.89e-02 20 chr13:103568543-10356856 2.27e-03 11_[+5(9.16e-06)]_1 chr6:30796436-30796456 1.47e-01 20 chr14:99984928-99984948 1.60e-01 20 chr1:93459849-93459869 3.56e-02 8_[+1(3.36e-05)]_4 chr6:167555845-167555865 7.71e-01 20 chr6:139540520-139540540 6.11e-02 20 chr5:72887113-72887133 1.79e-04 11_[+3(6.28e-05)]_1 chr14:76517335-76517355 3.56e-01 20 chr19:44249609-44249629 1.62e-02 20 chr14:69927005-69927025 2.93e-02 20 chr4:160096855-160096875 1.47e-01 20 chr16:50244608-50244628 3.60e-01 20 chr20:47274422-47274442 3.33e-03 12_[+2(3.33e-05)] chr15:37398760-37398780 9.77e-01 20 chr22:50468869-50468889 8.88e-01 20 chr12:15685501-15685521 5.49e-02 20 chr1:200457995-200458015 9.68e-02 20 chr1:182564962-182564982 8.34e-01 20 chr17:33325390-33325410 8.91e-02 2_[+2(8.39e-05)]_10 chr3:98048555-98048575 3.03e-02 7_[+1(5.27e-05)]_5 chr3:56736702-56736722 2.35e-02 20 chr2:29419861-29419881 4.42e-01 20 chr2:11618226-11618246 1.09e-02 20 chr1:46993859-46993879 9.98e-01 20 chr9:36555996-36556016 4.05e-01 20 chr8:8608391-8608411 5.28e-03 20 chr10:115559539-11555955 6.32e-02 [+2(3.33e-05)]_12 chr5:111887300-111887320 7.91e-01 20 chr16:86050125-86050145 4.30e-02 20 chr15:43577926-43577946 9.61e-02 20 chr21:35882997-35883017 2.14e-01 20 chr1:110855377-110855397 3.37e-02 20 chrX:37684647-37684667 1.74e-01 20 chr7:28893971-28893991 1.49e-01 20 chrX:9963976-9963996 8.32e-01 20 chr5:149940678-149940698 1.90e-03 3_[+3(7.83e-06)]_9 chr7:137588581-137588601 4.84e-01 20 chr10:91020291-91020311 4.73e-01 20 chr3:69210930-69210950 6.96e-02 20 chr8:142397048-142397068 1.68e-01 20 chr7:50485899-50485919 7.23e-02 20 chr1:46502903-46502923 3.14e-01 20 chr12:5112353-5112373 3.41e-01 20 chr7:105697557-105697577 7.02e-02 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n04.farnam.hpc.yale.internal ********************************************************************************