******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/SMAD1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr5:109390117-109390137 1.0000 20 chr2:58269846-58269866 1.0000 20 chr2:58467895-58467915 1.0000 20 chr7:83176998-83177018 1.0000 20 chr15:80326011-80326031 1.0000 20 chr17:20943722-20943742 1.0000 20 chr6:41246856-41246876 1.0000 20 chr2:57986005-57986025 1.0000 20 chr14:95758343-95758363 1.0000 20 chr13:81291082-81291102 1.0000 20 chr17:2167572-2167592 1.0000 20 chr3:99587347-99587367 1.0000 20 chr1:117098556-117098576 1.0000 20 chr2:149876446-149876466 1.0000 20 chr4:106558762-106558782 1.0000 20 chr1:94057466-94057486 1.0000 20 chr8:61532717-61532737 1.0000 20 chr1:235113841-235113861 1.0000 20 chr6:24284097-24284117 1.0000 20 chr1:40311438-40311458 1.0000 20 chr5:141603357-141603377 1.0000 20 chr1:183014599-183014619 1.0000 20 chr9:2602955-2602975 1.0000 20 chr12:56544542-56544562 1.0000 20 chr5:85326773-85326793 1.0000 20 chr9:38227202-38227222 1.0000 20 chr12:8396069-8396089 1.0000 20 chr8:81209455-81209475 1.0000 20 chr8:61720462-61720482 1.0000 20 chr2:8893890-8893910 1.0000 20 chr1:183658988-183659008 1.0000 20 chr6:158267454-158267474 1.0000 20 chr19:7764456-7764476 1.0000 20 chr3:28175907-28175927 1.0000 20 chr22:25883122-25883142 1.0000 20 chr14:72323307-72323327 1.0000 20 chr7:13572155-13572175 1.0000 20 chr5:176831315-176831335 1.0000 20 chr3:138735703-138735723 1.0000 20 chr1:44302325-44302345 1.0000 20 chr11:111667911-11166793 1.0000 20 chr3:29468361-29468381 1.0000 20 chr14:58797973-58797993 1.0000 20 chr5:158522029-158522049 1.0000 20 chr16:1321977-1321997 1.0000 20 chr1:79086017-79086037 1.0000 20 chr1:223724114-223724134 1.0000 20 chr7:75932825-75932845 1.0000 20 chr11:13127038-13127058 1.0000 20 chr9:111648395-111648415 1.0000 20 chr4:148978320-148978340 1.0000 20 chr14:103607228-10360724 1.0000 20 chr11:114030904-11403092 1.0000 20 chr2:208591149-208591169 1.0000 20 chr19:10382365-10382385 1.0000 20 chr10:17272334-17272354 1.0000 20 chr9:130770000-130770020 1.0000 20 chr11:107612007-10761202 1.0000 20 chr6:89371960-89371980 1.0000 20 chr9:102429045-102429065 1.0000 20 chr5:10601557-10601577 1.0000 20 chr7:104524742-104524762 1.0000 20 chr14:74239080-74239100 1.0000 20 chr2:86502090-86502110 1.0000 20 chr11:72125420-72125440 1.0000 20 chr21:35916398-35916418 1.0000 20 chr10:22013857-22013877 1.0000 20 chr6:15265839-15265859 1.0000 20 chr1:202555793-202555813 1.0000 20 chr1:203595851-203595871 1.0000 20 chr10:34047409-34047429 1.0000 20 chr1:178577055-178577075 1.0000 20 chr6:86310650-86310670 1.0000 20 chr11:71752150-71752170 1.0000 20 chr2:226139682-226139702 1.0000 20 chr14:31496181-31496201 1.0000 20 chr8:64112746-64112766 1.0000 20 chr20:6613029-6613049 1.0000 20 chr22:42356611-42356631 1.0000 20 chr21:30451682-30451702 1.0000 20 chr6:37208141-37208161 1.0000 20 chr12:121085016-12108503 1.0000 20 chr17:78193397-78193417 1.0000 20 chr19:40195079-40195099 1.0000 20 chr15:85901238-85901258 1.0000 20 chr3:105247047-105247067 1.0000 20 chr2:226135690-226135710 1.0000 20 chr14:107253850-10725387 1.0000 20 chr14:77506795-77506815 1.0000 20 chr1:40698250-40698270 1.0000 20 chr2:62515201-62515221 1.0000 20 chr8:130694470-130694490 1.0000 20 chr9:130742118-130742138 1.0000 20 chr1:1774417-1774437 1.0000 20 chr17:58679445-58679465 1.0000 20 chr2:96810379-96810399 1.0000 20 chr7:41865716-41865736 1.0000 20 chr11:85894318-85894338 1.0000 20 chr2:242383414-242383434 1.0000 20 chr20:62611365-62611385 1.0000 20 chrX:55893909-55893929 1.0000 20 chr20:35096227-35096247 1.0000 20 chr14:78047479-78047499 1.0000 20 chr1:46341855-46341875 1.0000 20 chr3:31503819-31503839 1.0000 20 chr5:150460995-150461015 1.0000 20 chr16:23530139-23530159 1.0000 20 chr1:145772331-145772351 1.0000 20 chr2:240190936-240190956 1.0000 20 chr14:100396971-10039699 1.0000 20 chr1:181096424-181096444 1.0000 20 chr19:47786873-47786893 1.0000 20 chr8:29999317-29999337 1.0000 20 chr5:53545658-53545678 1.0000 20 chr18:20714617-20714637 1.0000 20 chr1:179262738-179262758 1.0000 20 chr7:102948435-102948455 1.0000 20 chr11:32110032-32110052 1.0000 20 chr20:35185054-35185074 1.0000 20 chr5:108804618-108804638 1.0000 20 chr22:36766072-36766092 1.0000 20 chr15:96438000-96438020 1.0000 20 chr11:121238309-12123832 1.0000 20 chr10:89852904-89852924 1.0000 20 chr8:8483516-8483536 1.0000 20 chr11:50017331-50017351 1.0000 20 chr1:112060325-112060345 1.0000 20 chr6:157112548-157112568 1.0000 20 chr7:37121242-37121262 1.0000 20 chr12:72535386-72535406 1.0000 20 chr5:96264792-96264812 1.0000 20 chr11:115933321-11593334 1.0000 20 chr2:234422792-234422812 1.0000 20 chr1:234659502-234659522 1.0000 20 chr9:36148834-36148854 1.0000 20 chr1:82691307-82691327 1.0000 20 chr17:47817282-47817302 1.0000 20 chr15:84768042-84768062 1.0000 20 chr7:37955165-37955185 1.0000 20 chr15:80194483-80194503 1.0000 20 chr6:147021360-147021380 1.0000 20 chr14:34034433-34034453 1.0000 20 chr5:74870789-74870809 1.0000 20 chr7:30278703-30278723 1.0000 20 chr6:160351141-160351161 1.0000 20 chr2:111984755-111984775 1.0000 20 chr11:119622583-11962260 1.0000 20 chr12:118795415-11879543 1.0000 20 chr3:69135441-69135461 1.0000 20 chr2:148397592-148397612 1.0000 20 chr6:113964494-113964514 1.0000 20 chr4:26374600-26374620 1.0000 20 chr17:16311807-16311827 1.0000 20 chr12:31789809-31789829 1.0000 20 chr2:96809078-96809098 1.0000 20 chr3:13050985-13051005 1.0000 20 chr5:37738349-37738369 1.0000 20 chr19:49378270-49378290 1.0000 20 chr6:143172361-143172381 1.0000 20 chr11:117802861-11780288 1.0000 20 chr6:80842890-80842910 1.0000 20 chr6:29934040-29934060 1.0000 20 chr2:136894237-136894257 1.0000 20 chr3:49383184-49383204 1.0000 20 chr10:64286991-64287011 1.0000 20 chr15:31556345-31556365 1.0000 20 chr17:34415497-34415517 1.0000 20 chr1:113243597-113243617 1.0000 20 chr10:90146209-90146229 1.0000 20 chr1:27004244-27004264 1.0000 20 chr1:160492838-160492858 1.0000 20 chr2:26420090-26420110 1.0000 20 chr15:67058307-67058327 1.0000 20 chr5:153603091-153603111 1.0000 20 chr8:81055723-81055743 1.0000 20 chr1:111323691-111323711 1.0000 20 chr12:1715317-1715337 1.0000 20 chr12:11975221-11975241 1.0000 20 chr5:139675199-139675219 1.0000 20 chr9:133806949-133806969 1.0000 20 chr19:48836628-48836648 1.0000 20 chr1:209826641-209826661 1.0000 20 chr17:45646452-45646472 1.0000 20 chr1:210573458-210573478 1.0000 20 chr14:56014189-56014209 1.0000 20 chr4:77119713-77119733 1.0000 20 chr3:47032173-47032193 1.0000 20 chr9:115977577-115977597 1.0000 20 chr19:30162899-30162919 1.0000 20 chr8:120099939-120099959 1.0000 20 chr11:62366675-62366695 1.0000 20 chr11:3071053-3071073 1.0000 20 chr3:107688985-107689005 1.0000 20 chr22:27067437-27067457 1.0000 20 chr11:117685732-11768575 1.0000 20 chr12:14556781-14556801 1.0000 20 chr1:25889199-25889219 1.0000 20 chr5:142562816-142562836 1.0000 20 chr12:57030734-57030754 1.0000 20 chr4:83718297-83718317 1.0000 20 chr15:33191368-33191388 1.0000 20 chr17:1640124-1640144 1.0000 20 chr19:6534107-6534127 1.0000 20 chr11:65267957-65267977 1.0000 20 chr17:27369761-27369781 1.0000 20 chr5:41747530-41747550 1.0000 20 chr14:73931916-73931936 1.0000 20 chr4:38818101-38818121 1.0000 20 chr17:37832590-37832610 1.0000 20 chr19:34709399-34709419 1.0000 20 chr10:79442900-79442920 1.0000 20 chr2:219187535-219187555 1.0000 20 chr5:60704560-60704580 1.0000 20 chr22:37616706-37616726 1.0000 20 chr10:120458045-12045806 1.0000 20 chr1:153936377-153936397 1.0000 20 chr12:9913428-9913448 1.0000 20 chr18:58756158-58756178 1.0000 20 chr1:31950126-31950146 1.0000 20 chr17:36375505-36375525 1.0000 20 chr20:36809665-36809685 1.0000 20 chr4:186104938-186104958 1.0000 20 chr9:38182528-38182548 1.0000 20 chr10:74124180-74124200 1.0000 20 chr6:105930285-105930305 1.0000 20 chr4:166176734-166176754 1.0000 20 chr8:94948175-94948195 1.0000 20 chr21:26874528-26874548 1.0000 20 chr3:185300765-185300785 1.0000 20 chr15:65176590-65176610 1.0000 20 chr7:106371788-106371808 1.0000 20 chr3:196189989-196190009 1.0000 20 chr19:6801939-6801959 1.0000 20 chr8:96103493-96103513 1.0000 20 chr7:107852370-107852390 1.0000 20 chr6:43597888-43597908 1.0000 20 chr7:72147913-72147933 1.0000 20 chr1:234738755-234738775 1.0000 20 chr2:130569781-130569801 1.0000 20 chr2:70359846-70359866 1.0000 20 chr18:43336160-43336180 1.0000 20 chr6:141873831-141873851 1.0000 20 chr12:96441580-96441600 1.0000 20 chr4:9966681-9966701 1.0000 20 chr1:168435555-168435575 1.0000 20 chr17:56407791-56407811 1.0000 20 chr6:64247466-64247486 1.0000 20 chr12:31905436-31905456 1.0000 20 chr8:29208022-29208042 1.0000 20 chr5:111093141-111093161 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_SMAD1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/SMAD1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.238 C 0.258 G 0.261 T 0.243 Background letter frequencies (from file dataset with add-one prior applied): A 0.238 C 0.258 G 0.261 T 0.243 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TGCCARRH MEME-1 width = 8 sites = 85 llr = 559 E-value = 4.4e-060 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGCCARRH MEME-1 Description -------------------------------------------------------------------------------- Simplified A 2:::a534 pos.-specific C ::8a::23 probability G 1a2::542 matrix T 7:::::12 bits 2.1 * 1.9 * ** 1.7 * ** 1.4 * ** Relative 1.2 **** Entropy 1.0 ****** (9.5 bits) 0.8 ****** 0.6 ****** 0.4 ****** 0.2 ******* 0.0 -------- Multilevel TGCCAGGA consensus A AAC sequence CT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCCARRH MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr18:43336160-43336180 3 3.11e-05 AG TGCCAGGA AACCTGGCTA chr1:31950126-31950146 1 3.11e-05 . tgccagga ggtggtactt chr1:46341855-46341875 2 3.11e-05 g tgccaaga atggtttaaa chr17:58679445-58679465 8 3.11e-05 GGCTTTC TGCCAAGA GTTAG chr6:86310650-86310670 9 3.11e-05 TGGCAAAT TGCCAAGA TTTT chr11:72125420-72125440 6 3.11e-05 CTGGC TGCCAGGA AACCTGT chr6:89371960-89371980 10 3.11e-05 atggcttgg tgccaaga acc chr9:2602955-2602975 2 3.11e-05 A TGCCAAGA ATGAGGGACG chr2:57986005-57986025 11 3.11e-05 CTTGGCCTAT TGCCAAGA AA chr6:64247466-64247486 2 5.95e-05 G TGCCAAAA CTAACCCTCA chr5:153603091-153603111 1 5.95e-05 . tgccagaa agcaccatga chr2:226139682-226139702 11 5.95e-05 TTCTTGCCGA TGCCAGAA CA chr12:56544542-56544562 5 5.95e-05 AAAA TGCCAAAA ATGGGAAA chr7:83176998-83177018 4 5.95e-05 GCT TGCCAAAA CCTCTTGGT chr3:69135441-69135461 9 9.33e-05 TGGCCCCA TGCCAAGC TCCA chr9:36148834-36148854 6 9.33e-05 CTCAg tgccaggc ctgtgct chr1:181096424-181096444 1 9.33e-05 . tgccaagc agcctagact chr3:29468361-29468381 1 9.33e-05 . tgccaggc cctgtgctaa chr22:25883122-25883142 4 9.33e-05 cgg tgccaggc acatagaag chr1:235113841-235113861 3 9.33e-05 TG TGCCAGGC AGGAGAGAGA chr17:27369761-27369781 5 1.25e-04 ATCG TGCCAAGT TCTTAGCG chr7:37121242-37121262 11 1.25e-04 cttggcctgc tgccaggt aa chr8:29999317-29999337 11 1.25e-04 CCGGGCACAG TGCCAAGT AC chr7:41865716-41865736 6 1.25e-04 CAGCC TGCCAAGT AAAGTTC chr1:183658988-183659008 2 1.25e-04 g tgccaggt gctgtggggg chr6:80842890-80842910 4 1.56e-04 TTG TGCCAGCA CTTGAACTG chr2:242383414-242383434 10 1.56e-04 TTGGCTGGA TGCCAGCA GGG chr2:111984755-111984775 8 1.87e-04 GGCTGAC TGCCAAAC CACTT chr5:158522029-158522049 11 1.87e-04 CCTGGCTTCC TGCCAAAC TT chr8:120099939-120099959 7 2.16e-04 GCACGG TGCCAAAT TCTGTA chr7:30278703-30278723 12 2.16e-04 GTGCTGACAG TGCCAAAT T chr11:119622583-11962260 8 2.50e-04 ggcacaa tgccaggg gcttc chr5:85326773-85326793 10 2.50e-04 CTggcactg tgccaggg act chr6:24284097-24284117 2 2.50e-04 G TGCCAGGG GTTATTCTCc chr4:106558762-106558782 7 2.50e-04 GCATTG TGCCAAGG ACTGGA chr14:95758343-95758363 2 2.50e-04 g tgccaagg gttgacgtgt chr5:60704560-60704580 6 3.14e-04 CTGGC TGCCAGCC AAACCTT chr22:27067437-27067457 1 3.14e-04 . TGCCAACC AACTAACCCA chr6:143172361-143172381 1 3.14e-04 . AGCCAAGA GTGGGGTCCA chr12:31789809-31789829 7 3.14e-04 GCTTTG TGCCAGCC ATGCCT chr6:15265839-15265859 13 3.14e-04 GCAGCCAAGA AGCCAGGA chr15:80326011-80326031 11 3.14e-04 TCTGGCACCC TGCCAGCC CC chr2:58269846-58269866 2 3.14e-04 C AGCCAAGA AAGTCCTTTT chr4:77119713-77119733 2 3.76e-04 A TGCCAGAG TCATAACCAA chr2:86502090-86502110 2 3.76e-04 C TGCCAAAG GCCTCCCTAT chr16:1321977-1321997 4 3.76e-04 CCC TGCCAGCT GGTCTCTGG chr2:226135690-226135710 6 4.37e-04 AATAT TGGCAGGA AGCCAGT chr6:37208141-37208161 2 4.37e-04 t tggcagga agccacagtt chr2:208591149-208591169 1 4.65e-04 . AGCCAGAA ACTGGTTCTT chr22:37616706-37616726 12 5.60e-04 cttacaatta tggcagaa g chr17:37832590-37832610 1 5.60e-04 . AGCCAGGC CTCCTTGTCA chr1:113243597-113243617 2 5.60e-04 G AGCCAGGC ATGACCTCAT chr4:26374600-26374620 7 5.60e-04 ACACGT TGGCAGAA AGCCAG chr15:96438000-96438020 2 5.60e-04 G AGCCAGGC CCTGTCTTAA chr8:130694470-130694490 12 5.60e-04 AAGAACTCAT TGGCAAAA A chr8:61720462-61720482 12 5.60e-04 ACTGTGGGTT TGGCAGAA G chr6:41246856-41246876 10 5.60e-04 ttggccctg agccaagc aga chr1:40698250-40698270 9 6.87e-04 tggctggc tgccaatc aggg chr1:202555793-202555813 2 6.87e-04 C AGCCAGCA GCTGCATGGT chr10:17272334-17272354 1 6.87e-04 . TGCCAATC ACCGGGCGGG chr10:120458045-12045806 4 7.79e-04 ctg tgccagtt tctgagccg chr1:160492838-160492858 2 7.79e-04 G AGCCAGAC AACTGTATAC chr1:179262738-179262758 10 7.79e-04 AAGCTTCCT TGGCAGGT TGC chr14:74239080-74239100 2 7.79e-04 A TGCCAATT TTTACTATGG chr11:114030904-11403092 9 7.79e-04 TGGCTGCG AGCCAGAC TTGT chr7:75932825-75932845 1 7.79e-04 . TGCCAGTT TCTAGCCGCT chr1:183014599-183014619 11 7.79e-04 attggcaact tgccaatt ga chr5:139675199-139675219 13 8.39e-04 TAAAATGTGC TGGCAACA chr17:1640124-1640144 7 1.13e-03 GCTGGA GGCCAGGA GTCTTG chr5:150460995-150461015 12 1.13e-03 tttggcccta agccagag c chr17:2167572-2167592 2 1.13e-03 G AGCCAAAG GAGGACTTTT chr10:79442900-79442920 9 1.22e-03 tggcctaa agccagta gtta chr14:77506795-77506815 1 1.22e-03 . TGGCAGCC GTTCAAAGTG chr17:36375505-36375525 13 1.28e-03 ATTTGAGACT TGGCAACT chr11:117802861-11780288 13 1.28e-03 ACACATCTCC TGGCAGCT chr21:35916398-35916418 7 1.28e-03 cttact tggcaact tgccag chr1:94057466-94057486 7 1.28e-03 GGCTGC TGGCAGCT GGCCAA chr5:74870789-74870809 7 1.34e-03 AACTTC TGGCAGTA TGCCAG chr2:58467895-58467915 1 1.34e-03 . GGCCAAAA TAAGGTTTTC chr5:108804618-108804638 5 1.40e-03 AGGG AGCCAACG TTGTCATG chr7:107852370-107852390 7 2.02e-03 gcagga ggccaacc agcaca chr1:153936377-153936397 3 2.15e-03 TG GGCCAAAG TCTCATCTGT chr3:13050985-13051005 6 2.15e-03 TGGGC GGCCAACT CCCTTTG chr8:96103493-96103513 8 2.28e-03 tggtgga aggcaaag gggac chr4:38818101-38818121 6 2.28e-03 atgga aggcaaag ggggagc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCCARRH MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr18:43336160-43336180 3.1e-05 2_[+1]_10 chr1:31950126-31950146 3.1e-05 [+1]_12 chr1:46341855-46341875 3.1e-05 1_[+1]_11 chr17:58679445-58679465 3.1e-05 7_[+1]_5 chr6:86310650-86310670 3.1e-05 8_[+1]_4 chr11:72125420-72125440 3.1e-05 5_[+1]_7 chr6:89371960-89371980 3.1e-05 9_[+1]_3 chr9:2602955-2602975 3.1e-05 1_[+1]_11 chr2:57986005-57986025 3.1e-05 10_[+1]_2 chr6:64247466-64247486 6e-05 1_[+1]_11 chr5:153603091-153603111 6e-05 [+1]_12 chr2:226139682-226139702 6e-05 10_[+1]_2 chr12:56544542-56544562 6e-05 4_[+1]_8 chr7:83176998-83177018 6e-05 3_[+1]_9 chr3:69135441-69135461 9.3e-05 8_[+1]_4 chr9:36148834-36148854 9.3e-05 5_[+1]_7 chr1:181096424-181096444 9.3e-05 [+1]_12 chr3:29468361-29468381 9.3e-05 [+1]_12 chr22:25883122-25883142 9.3e-05 3_[+1]_9 chr1:235113841-235113861 9.3e-05 2_[+1]_10 chr17:27369761-27369781 0.00013 4_[+1]_8 chr7:37121242-37121262 0.00013 10_[+1]_2 chr8:29999317-29999337 0.00013 10_[+1]_2 chr7:41865716-41865736 0.00013 5_[+1]_7 chr1:183658988-183659008 0.00013 1_[+1]_11 chr6:80842890-80842910 0.00016 3_[+1]_9 chr2:242383414-242383434 0.00016 9_[+1]_3 chr2:111984755-111984775 0.00019 7_[+1]_5 chr5:158522029-158522049 0.00019 10_[+1]_2 chr8:120099939-120099959 0.00022 6_[+1]_6 chr7:30278703-30278723 0.00022 11_[+1]_1 chr11:119622583-11962260 0.00025 7_[+1]_5 chr5:85326773-85326793 0.00025 9_[+1]_3 chr6:24284097-24284117 0.00025 1_[+1]_11 chr4:106558762-106558782 0.00025 6_[+1]_6 chr14:95758343-95758363 0.00025 1_[+1]_11 chr5:60704560-60704580 0.00031 5_[+1]_7 chr22:27067437-27067457 0.00031 [+1]_12 chr6:143172361-143172381 0.00031 [+1]_12 chr12:31789809-31789829 0.00031 6_[+1]_6 chr6:15265839-15265859 0.00031 12_[+1] chr15:80326011-80326031 0.00031 10_[+1]_2 chr2:58269846-58269866 0.00031 1_[+1]_11 chr4:77119713-77119733 0.00038 1_[+1]_11 chr2:86502090-86502110 0.00038 1_[+1]_11 chr16:1321977-1321997 0.00038 3_[+1]_9 chr2:226135690-226135710 0.00044 5_[+1]_7 chr6:37208141-37208161 0.00044 1_[+1]_11 chr2:208591149-208591169 0.00046 [+1]_12 chr22:37616706-37616726 0.00056 11_[+1]_1 chr17:37832590-37832610 0.00056 [+1]_12 chr1:113243597-113243617 0.00056 1_[+1]_11 chr4:26374600-26374620 0.00056 6_[+1]_6 chr15:96438000-96438020 0.00056 1_[+1]_11 chr8:130694470-130694490 0.00056 11_[+1]_1 chr8:61720462-61720482 0.00056 11_[+1]_1 chr6:41246856-41246876 0.00056 9_[+1]_3 chr1:40698250-40698270 0.00069 8_[+1]_4 chr1:202555793-202555813 0.00069 1_[+1]_11 chr10:17272334-17272354 0.00069 [+1]_12 chr10:120458045-12045806 0.00078 3_[+1]_9 chr1:160492838-160492858 0.00078 1_[+1]_11 chr1:179262738-179262758 0.00078 9_[+1]_3 chr14:74239080-74239100 0.00078 1_[+1]_11 chr11:114030904-11403092 0.00078 8_[+1]_4 chr7:75932825-75932845 0.00078 [+1]_12 chr1:183014599-183014619 0.00078 10_[+1]_2 chr5:139675199-139675219 0.00084 12_[+1] chr17:1640124-1640144 0.0011 6_[+1]_6 chr5:150460995-150461015 0.0011 11_[+1]_1 chr17:2167572-2167592 0.0011 1_[+1]_11 chr10:79442900-79442920 0.0012 8_[+1]_4 chr14:77506795-77506815 0.0012 [+1]_12 chr17:36375505-36375525 0.0013 12_[+1] chr11:117802861-11780288 0.0013 12_[+1] chr21:35916398-35916418 0.0013 6_[+1]_6 chr1:94057466-94057486 0.0013 6_[+1]_6 chr5:74870789-74870809 0.0013 6_[+1]_6 chr2:58467895-58467915 0.0013 [+1]_12 chr5:108804618-108804638 0.0014 4_[+1]_8 chr7:107852370-107852390 0.002 6_[+1]_6 chr1:153936377-153936397 0.0022 2_[+1]_10 chr3:13050985-13051005 0.0022 5_[+1]_7 chr8:96103493-96103513 0.0023 7_[+1]_5 chr4:38818101-38818121 0.0023 5_[+1]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCCARRH MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGCCARRH width=8 seqs=85 chr18:43336160-43336180 ( 3) TGCCAGGA 1 chr1:31950126-31950146 ( 1) TGCCAGGA 1 chr1:46341855-46341875 ( 2) TGCCAAGA 1 chr17:58679445-58679465 ( 8) TGCCAAGA 1 chr6:86310650-86310670 ( 9) TGCCAAGA 1 chr11:72125420-72125440 ( 6) TGCCAGGA 1 chr6:89371960-89371980 ( 10) TGCCAAGA 1 chr9:2602955-2602975 ( 2) TGCCAAGA 1 chr2:57986005-57986025 ( 11) TGCCAAGA 1 chr6:64247466-64247486 ( 2) TGCCAAAA 1 chr5:153603091-153603111 ( 1) TGCCAGAA 1 chr2:226139682-226139702 ( 11) TGCCAGAA 1 chr12:56544542-56544562 ( 5) TGCCAAAA 1 chr7:83176998-83177018 ( 4) TGCCAAAA 1 chr3:69135441-69135461 ( 9) TGCCAAGC 1 chr9:36148834-36148854 ( 6) TGCCAGGC 1 chr1:181096424-181096444 ( 1) TGCCAAGC 1 chr3:29468361-29468381 ( 1) TGCCAGGC 1 chr22:25883122-25883142 ( 4) TGCCAGGC 1 chr1:235113841-235113861 ( 3) TGCCAGGC 1 chr17:27369761-27369781 ( 5) TGCCAAGT 1 chr7:37121242-37121262 ( 11) TGCCAGGT 1 chr8:29999317-29999337 ( 11) TGCCAAGT 1 chr7:41865716-41865736 ( 6) TGCCAAGT 1 chr1:183658988-183659008 ( 2) TGCCAGGT 1 chr6:80842890-80842910 ( 4) TGCCAGCA 1 chr2:242383414-242383434 ( 10) TGCCAGCA 1 chr2:111984755-111984775 ( 8) TGCCAAAC 1 chr5:158522029-158522049 ( 11) TGCCAAAC 1 chr8:120099939-120099959 ( 7) TGCCAAAT 1 chr7:30278703-30278723 ( 12) TGCCAAAT 1 chr11:119622583-11962260 ( 8) TGCCAGGG 1 chr5:85326773-85326793 ( 10) TGCCAGGG 1 chr6:24284097-24284117 ( 2) TGCCAGGG 1 chr4:106558762-106558782 ( 7) TGCCAAGG 1 chr14:95758343-95758363 ( 2) TGCCAAGG 1 chr5:60704560-60704580 ( 6) TGCCAGCC 1 chr22:27067437-27067457 ( 1) TGCCAACC 1 chr6:143172361-143172381 ( 1) AGCCAAGA 1 chr12:31789809-31789829 ( 7) TGCCAGCC 1 chr6:15265839-15265859 ( 13) AGCCAGGA 1 chr15:80326011-80326031 ( 11) TGCCAGCC 1 chr2:58269846-58269866 ( 2) AGCCAAGA 1 chr4:77119713-77119733 ( 2) TGCCAGAG 1 chr2:86502090-86502110 ( 2) TGCCAAAG 1 chr16:1321977-1321997 ( 4) TGCCAGCT 1 chr2:226135690-226135710 ( 6) TGGCAGGA 1 chr6:37208141-37208161 ( 2) TGGCAGGA 1 chr2:208591149-208591169 ( 1) AGCCAGAA 1 chr22:37616706-37616726 ( 12) TGGCAGAA 1 chr17:37832590-37832610 ( 1) AGCCAGGC 1 chr1:113243597-113243617 ( 2) AGCCAGGC 1 chr4:26374600-26374620 ( 7) TGGCAGAA 1 chr15:96438000-96438020 ( 2) AGCCAGGC 1 chr8:130694470-130694490 ( 12) TGGCAAAA 1 chr8:61720462-61720482 ( 12) TGGCAGAA 1 chr6:41246856-41246876 ( 10) AGCCAAGC 1 chr1:40698250-40698270 ( 9) TGCCAATC 1 chr1:202555793-202555813 ( 2) AGCCAGCA 1 chr10:17272334-17272354 ( 1) TGCCAATC 1 chr10:120458045-12045806 ( 4) TGCCAGTT 1 chr1:160492838-160492858 ( 2) AGCCAGAC 1 chr1:179262738-179262758 ( 10) TGGCAGGT 1 chr14:74239080-74239100 ( 2) TGCCAATT 1 chr11:114030904-11403092 ( 9) AGCCAGAC 1 chr7:75932825-75932845 ( 1) TGCCAGTT 1 chr1:183014599-183014619 ( 11) TGCCAATT 1 chr5:139675199-139675219 ( 13) TGGCAACA 1 chr17:1640124-1640144 ( 7) GGCCAGGA 1 chr5:150460995-150461015 ( 12) AGCCAGAG 1 chr17:2167572-2167592 ( 2) AGCCAAAG 1 chr10:79442900-79442920 ( 9) AGCCAGTA 1 chr14:77506795-77506815 ( 1) TGGCAGCC 1 chr17:36375505-36375525 ( 13) TGGCAACT 1 chr11:117802861-11780288 ( 13) TGGCAGCT 1 chr21:35916398-35916418 ( 7) TGGCAACT 1 chr1:94057466-94057486 ( 7) TGGCAGCT 1 chr5:74870789-74870809 ( 7) TGGCAGTA 1 chr2:58467895-58467915 ( 1) GGCCAAAA 1 chr5:108804618-108804638 ( 5) AGCCAACG 1 chr7:107852370-107852390 ( 7) GGCCAACC 1 chr1:153936377-153936397 ( 3) GGCCAAAG 1 chr3:13050985-13051005 ( 6) GGCCAACT 1 chr8:96103493-96103513 ( 8) AGGCAAAG 1 chr4:38818101-38818121 ( 6) AGGCAAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCCARRH MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.10736 E= 4.4e-060 -25 -1305 -215 161 -1305 -1305 194 -1305 -1305 165 -47 -1305 -1305 195 -1305 -1305 207 -1305 -1305 -1305 102 -1305 99 -1305 25 -37 70 -137 66 0 -77 -20 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCCARRH MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 85 E= 4.4e-060 0.200000 0.000000 0.058824 0.741176 0.000000 0.000000 1.000000 0.000000 0.000000 0.811765 0.188235 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.482353 0.000000 0.517647 0.000000 0.282353 0.200000 0.423529 0.094118 0.376471 0.258824 0.152941 0.211765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCCARRH MEME-1 regular expression -------------------------------------------------------------------------------- [TA]GCCA[GA][GAC][ACT] -------------------------------------------------------------------------------- Time 3.06 secs. ******************************************************************************** ******************************************************************************** MOTIF NYYTGGCH MEME-2 width = 8 sites = 61 llr = 403 E-value = 2.5e-030 ******************************************************************************** -------------------------------------------------------------------------------- Motif NYYTGGCH MEME-2 Description -------------------------------------------------------------------------------- Simplified A 41:::::3 pos.-specific C 244:::a3 probability G 22::aa:: matrix T 326a:::3 bits 2.1 * 1.9 **** 1.7 **** 1.4 **** Relative 1.2 **** Entropy 1.0 ***** (9.5 bits) 0.8 ***** 0.6 ***** 0.4 ****** 0.2 ******* 0.0 -------- Multilevel ACTTGGCA consensus TTC T sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NYYTGGCH MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:48836628-48836648 12 3.07e-05 TCACAGCCTG ACTTGGCT A chr15:85901238-85901258 6 3.07e-05 CCTAG ACTTGGCT CCTTGCC chr19:10382365-10382385 9 3.07e-05 GTTTGGGA ACTTGGCT CTGT chr2:8893890-8893910 7 3.07e-05 CCCAAT ACTTGGCT AGTAGC chr6:43597888-43597908 10 4.71e-05 GGAATAGAA ACTTGGCC TAG chr13:81291082-81291102 13 4.71e-05 TTGCCCCACC ACTTGGCC chr22:36766072-36766092 4 7.87e-05 ATC ACCTGGCA CTGTGCCAG chr12:8396069-8396089 13 7.87e-05 GTTGACTATG TCTTGGCA chr18:43336160-43336180 12 1.11e-04 GTGCCAGGAA ACCTGGCT A chr11:62366675-62366695 13 1.11e-04 GAAGGGGTTA ACCTGGCT chr6:147021360-147021380 5 1.11e-04 CCAT TCTTGGCT CCTGGCCA chr5:10601557-10601577 9 1.11e-04 gaggctca acctggct gggt chr6:29934040-29934060 10 1.59e-04 ACCAGCAGC TCTTGGCC CAA chr6:113964494-113964514 9 1.59e-04 GAGCTGAC TCTTGGCC TTCT chr3:107688985-107689005 9 1.90e-04 CATATTTG ATTTGGCT ATGT chr20:6613029-6613049 11 1.90e-04 CTGTCTCAGT TCCTGGCA CG chr3:138735703-138735723 6 1.90e-04 CTAAA ATTTGGCT CACTGCC chr14:72323307-72323327 13 1.90e-04 aagcaccacc tcctggca chr11:117685732-11768575 11 2.39e-04 TTCAGCATGC TCCTGGCT CG chr19:47786873-47786893 11 2.39e-04 cggacctgTA ATTTGGCC CA chr5:150460995-150461015 1 2.39e-04 . atttggcc ctaagccaga chr11:71752150-71752170 11 2.39e-04 GGAGCGATCT TCCTGGCT GA chr16:23530139-23530159 11 3.20e-04 cttactatgt atctggca ac chr12:121085016-12108503 10 3.20e-04 tttctagat gcttggca cag chr10:34047409-34047429 10 3.20e-04 tgcctcgat ttttggcA TAG chr8:64112746-64112766 4 4.01e-04 tcc ttttggct gtatgccag chr12:11975221-11975241 4 4.84e-04 TTC CCCTGGCA CATGGCCAG chr1:27004244-27004264 12 4.84e-04 TGGAGAGGAA GCTTGGCC A chr7:13572155-13572175 8 4.84e-04 AGACATT TTTTGGCC TTAGG chr15:33191368-33191388 10 5.66e-04 CCTTGTATT TTCTGGCA CAC chr15:31556345-31556365 3 5.66e-04 CT GCCTGGCA CAAAGCCAGG chr17:16311807-16311827 10 5.66e-04 TAGCCCCAG CCCTGGCT TGG chr6:160351141-160351161 10 5.66e-04 ACGTGCTTT CCCTGGCT AGC chr1:40311438-40311458 12 5.66e-04 GGGGAAGTCC CCCTGGCT T chr21:26874528-26874548 2 6.80e-04 c ccctggcc catcccaaat chr4:83718297-83718317 12 6.80e-04 AGGCATTTGC AGCTGGCA C chr1:210573458-210573478 12 6.80e-04 tccagctgtc ttctggct t chr1:209826641-209826661 4 6.80e-04 TTT CCCTGGCC TCCTGCCAG chr3:49383184-49383204 11 6.80e-04 cgggaggcgg agctggca ct chr8:8483516-8483536 12 6.80e-04 ttgttgcccc agctggca g chr7:102948435-102948455 13 6.80e-04 TGTGCTTTTT CTTTGGCA chr4:148978320-148978340 12 6.80e-04 AGAAACTGCA AGCTGGCA C chr10:22013857-22013877 13 7.95e-04 CAGTTAGTAG AGCTGGCT chr3:99587347-99587367 13 7.95e-04 GCTGCTATAG GTTTGGCA chr9:133806949-133806969 12 8.92e-04 TAAAAAACTG TGTTGGCC A chr15:67058307-67058327 4 8.92e-04 GAG AGCTGGCC CCCAGCCAG chr11:50017331-50017351 11 8.92e-04 tgaggcacat tgttggcc ct chr2:148397592-148397612 9 9.72e-04 CACTACCT GTTTGGCC CTAG chr1:203595851-203595871 9 9.72e-04 GAGTAATG GTTTGGCC TCGC chr11:111667911-11166793 7 9.72e-04 ctattc aactggct tgctgc chr5:176831315-176831335 10 1.07e-03 TGGGTTGGG GTCTGGCA CTG chr5:41747530-41747550 4 1.17e-03 atg ggttggca ctgtgccaa chr2:136894237-136894257 8 1.17e-03 TTTGGAA GGTTGGCA CAAGG chr6:141873831-141873851 4 1.26e-03 att cattggca tttgtccaa chr9:111648395-111648415 12 1.26e-03 aactgtaatg cattggca g chr14:73931916-73931936 7 1.34e-03 ATTGAG GGTTGGCC TGTGGC chrX:55893909-55893929 7 1.34e-03 TCAGTG CATTGGCT GTGAGC chr6:158267454-158267474 6 1.34e-03 AAGAA TACTGGCC TCAGGCC chr5:141603357-141603377 10 1.34e-03 aagaagtag cattggct ggg chr15:80194483-80194503 5 1.41e-03 tgag cattggcc acatgcca chr9:130770000-130770020 5 1.48e-03 GGCA GATTGGCC ACAGGATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NYYTGGCH MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:48836628-48836648 3.1e-05 11_[+2]_1 chr15:85901238-85901258 3.1e-05 5_[+2]_7 chr19:10382365-10382385 3.1e-05 8_[+2]_4 chr2:8893890-8893910 3.1e-05 6_[+2]_6 chr6:43597888-43597908 4.7e-05 9_[+2]_3 chr13:81291082-81291102 4.7e-05 12_[+2] chr22:36766072-36766092 7.9e-05 3_[+2]_9 chr12:8396069-8396089 7.9e-05 12_[+2] chr18:43336160-43336180 0.00011 11_[+2]_1 chr11:62366675-62366695 0.00011 12_[+2] chr6:147021360-147021380 0.00011 4_[+2]_8 chr5:10601557-10601577 0.00011 8_[+2]_4 chr6:29934040-29934060 0.00016 9_[+2]_3 chr6:113964494-113964514 0.00016 8_[+2]_4 chr3:107688985-107689005 0.00019 8_[+2]_4 chr20:6613029-6613049 0.00019 10_[+2]_2 chr3:138735703-138735723 0.00019 5_[+2]_7 chr14:72323307-72323327 0.00019 12_[+2] chr11:117685732-11768575 0.00024 10_[+2]_2 chr19:47786873-47786893 0.00024 10_[+2]_2 chr5:150460995-150461015 0.00024 [+2]_12 chr11:71752150-71752170 0.00024 10_[+2]_2 chr16:23530139-23530159 0.00032 10_[+2]_2 chr12:121085016-12108503 0.00032 9_[+2]_3 chr10:34047409-34047429 0.00032 9_[+2]_3 chr8:64112746-64112766 0.0004 3_[+2]_9 chr12:11975221-11975241 0.00048 3_[+2]_9 chr1:27004244-27004264 0.00048 11_[+2]_1 chr7:13572155-13572175 0.00048 7_[+2]_5 chr15:33191368-33191388 0.00057 9_[+2]_3 chr15:31556345-31556365 0.00057 2_[+2]_10 chr17:16311807-16311827 0.00057 9_[+2]_3 chr6:160351141-160351161 0.00057 9_[+2]_3 chr1:40311438-40311458 0.00057 11_[+2]_1 chr21:26874528-26874548 0.00068 1_[+2]_11 chr4:83718297-83718317 0.00068 11_[+2]_1 chr1:210573458-210573478 0.00068 11_[+2]_1 chr1:209826641-209826661 0.00068 3_[+2]_9 chr3:49383184-49383204 0.00068 10_[+2]_2 chr8:8483516-8483536 0.00068 11_[+2]_1 chr7:102948435-102948455 0.00068 12_[+2] chr4:148978320-148978340 0.00068 11_[+2]_1 chr10:22013857-22013877 0.0008 12_[+2] chr3:99587347-99587367 0.0008 12_[+2] chr9:133806949-133806969 0.00089 11_[+2]_1 chr15:67058307-67058327 0.00089 3_[+2]_9 chr11:50017331-50017351 0.00089 10_[+2]_2 chr2:148397592-148397612 0.00097 8_[+2]_4 chr1:203595851-203595871 0.00097 8_[+2]_4 chr11:111667911-11166793 0.00097 6_[+2]_6 chr5:176831315-176831335 0.0011 9_[+2]_3 chr5:41747530-41747550 0.0012 3_[+2]_9 chr2:136894237-136894257 0.0012 7_[+2]_5 chr6:141873831-141873851 0.0013 3_[+2]_9 chr9:111648395-111648415 0.0013 11_[+2]_1 chr14:73931916-73931936 0.0013 6_[+2]_6 chrX:55893909-55893929 0.0013 6_[+2]_6 chr6:158267454-158267474 0.0013 5_[+2]_7 chr5:141603357-141603377 0.0013 9_[+2]_3 chr15:80194483-80194503 0.0014 4_[+2]_8 chr9:130770000-130770020 0.0015 4_[+2]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NYYTGGCH MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF NYYTGGCH width=8 seqs=61 chr19:48836628-48836648 ( 12) ACTTGGCT 1 chr15:85901238-85901258 ( 6) ACTTGGCT 1 chr19:10382365-10382385 ( 9) ACTTGGCT 1 chr2:8893890-8893910 ( 7) ACTTGGCT 1 chr6:43597888-43597908 ( 10) ACTTGGCC 1 chr13:81291082-81291102 ( 13) ACTTGGCC 1 chr22:36766072-36766092 ( 4) ACCTGGCA 1 chr12:8396069-8396089 ( 13) TCTTGGCA 1 chr18:43336160-43336180 ( 12) ACCTGGCT 1 chr11:62366675-62366695 ( 13) ACCTGGCT 1 chr6:147021360-147021380 ( 5) TCTTGGCT 1 chr5:10601557-10601577 ( 9) ACCTGGCT 1 chr6:29934040-29934060 ( 10) TCTTGGCC 1 chr6:113964494-113964514 ( 9) TCTTGGCC 1 chr3:107688985-107689005 ( 9) ATTTGGCT 1 chr20:6613029-6613049 ( 11) TCCTGGCA 1 chr3:138735703-138735723 ( 6) ATTTGGCT 1 chr14:72323307-72323327 ( 13) TCCTGGCA 1 chr11:117685732-11768575 ( 11) TCCTGGCT 1 chr19:47786873-47786893 ( 11) ATTTGGCC 1 chr5:150460995-150461015 ( 1) ATTTGGCC 1 chr11:71752150-71752170 ( 11) TCCTGGCT 1 chr16:23530139-23530159 ( 11) ATCTGGCA 1 chr12:121085016-12108503 ( 10) GCTTGGCA 1 chr10:34047409-34047429 ( 10) TTTTGGCA 1 chr8:64112746-64112766 ( 4) TTTTGGCT 1 chr12:11975221-11975241 ( 4) CCCTGGCA 1 chr1:27004244-27004264 ( 12) GCTTGGCC 1 chr7:13572155-13572175 ( 8) TTTTGGCC 1 chr15:33191368-33191388 ( 10) TTCTGGCA 1 chr15:31556345-31556365 ( 3) GCCTGGCA 1 chr17:16311807-16311827 ( 10) CCCTGGCT 1 chr6:160351141-160351161 ( 10) CCCTGGCT 1 chr1:40311438-40311458 ( 12) CCCTGGCT 1 chr21:26874528-26874548 ( 2) CCCTGGCC 1 chr4:83718297-83718317 ( 12) AGCTGGCA 1 chr1:210573458-210573478 ( 12) TTCTGGCT 1 chr1:209826641-209826661 ( 4) CCCTGGCC 1 chr3:49383184-49383204 ( 11) AGCTGGCA 1 chr8:8483516-8483536 ( 12) AGCTGGCA 1 chr7:102948435-102948455 ( 13) CTTTGGCA 1 chr4:148978320-148978340 ( 12) AGCTGGCA 1 chr10:22013857-22013877 ( 13) AGCTGGCT 1 chr3:99587347-99587367 ( 13) GTTTGGCA 1 chr9:133806949-133806969 ( 12) TGTTGGCC 1 chr15:67058307-67058327 ( 4) AGCTGGCC 1 chr11:50017331-50017351 ( 11) TGTTGGCC 1 chr2:148397592-148397612 ( 9) GTTTGGCC 1 chr1:203595851-203595871 ( 9) GTTTGGCC 1 chr11:111667911-11166793 ( 7) AACTGGCT 1 chr5:176831315-176831335 ( 10) GTCTGGCA 1 chr5:41747530-41747550 ( 4) GGTTGGCA 1 chr2:136894237-136894257 ( 8) GGTTGGCA 1 chr6:141873831-141873851 ( 4) CATTGGCA 1 chr9:111648395-111648415 ( 12) CATTGGCA 1 chr14:73931916-73931936 ( 7) GGTTGGCC 1 chrX:55893909-55893929 ( 7) CATTGGCT 1 chr6:158267454-158267474 ( 6) TACTGGCC 1 chr5:141603357-141603377 ( 10) CATTGGCT 1 chr15:80194483-80194503 ( 5) CATTGGCC 1 chr9:130770000-130770020 ( 5) GATTGGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NYYTGGCH MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.71451 E= 2.5e-030 60 -39 -53 11 -86 78 -53 2 -1257 78 -1257 120 -1257 -1257 -1257 204 -1257 -1257 194 -1257 -1257 -1257 194 -1257 -1257 195 -1257 -1257 53 27 -1257 50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NYYTGGCH MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 61 E= 2.5e-030 0.360656 0.196721 0.180328 0.262295 0.131148 0.442623 0.180328 0.245902 0.000000 0.442623 0.000000 0.557377 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.344262 0.311475 0.000000 0.344262 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NYYTGGCH MEME-2 regular expression -------------------------------------------------------------------------------- [AT][CT][TC]TGGC[ATC] -------------------------------------------------------------------------------- Time 3.97 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAGAACT MEME-3 width = 8 sites = 2 llr = 23 E-value = 5.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAGAACT MEME-3 Description -------------------------------------------------------------------------------- Simplified A aaa:aa:: pos.-specific C ::::::a: probability G :::a:::: matrix T :::::::a bits 2.1 *** ** * 1.9 ******** 1.7 ******** 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (16.3 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAGAACT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGAACT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:85894318-85894338 8 1.25e-05 ctgaagt aaagaact gcatc chr8:61532717-61532737 12 1.25e-05 TTGATGAATG AAAGAACT A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGAACT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:85894318-85894338 1.2e-05 7_[+3]_5 chr8:61532717-61532737 1.2e-05 11_[+3]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGAACT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAGAACT width=8 seqs=2 chr11:85894318-85894338 ( 8) AAAGAACT 1 chr8:61532717-61532737 ( 12) AAAGAACT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGAACT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.81663 E= 5.6e+003 206 -765 -765 -765 206 -765 -765 -765 206 -765 -765 -765 -765 -765 193 -765 206 -765 -765 -765 206 -765 -765 -765 -765 195 -765 -765 -765 -765 -765 204 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGAACT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 5.6e+003 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGAACT MEME-3 regular expression -------------------------------------------------------------------------------- AAAGAACT -------------------------------------------------------------------------------- Time 4.62 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAAACWG MEME-4 width = 8 sites = 2 llr = 21 E-value = 1.2e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAAACWG MEME-4 Description -------------------------------------------------------------------------------- Simplified A aaaaa:5: pos.-specific C :::::a:: probability G :::::::a matrix T ::::::5: bits 2.1 ***** 1.9 ****** * 1.7 ****** * 1.4 ****** * Relative 1.2 ****** * Entropy 1.0 ******** (15.3 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAAACAG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAACWG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:106371788-106371808 2 1.22e-05 g aaaaacag acaatagaag chr9:133806949-133806969 4 2.47e-05 ATA AAAAACTG TGTTGGCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAACWG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:106371788-106371808 1.2e-05 1_[+4]_11 chr9:133806949-133806969 2.5e-05 3_[+4]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAACWG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAAACWG width=8 seqs=2 chr7:106371788-106371808 ( 2) AAAAACAG 1 chr9:133806949-133806969 ( 4) AAAAACTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAACWG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 6.9542 E= 1.2e+004 206 -765 -765 -765 206 -765 -765 -765 206 -765 -765 -765 206 -765 -765 -765 206 -765 -765 -765 -765 195 -765 -765 107 -765 -765 104 -765 -765 193 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAACWG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.2e+004 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAACWG MEME-4 regular expression -------------------------------------------------------------------------------- AAAAAC[AT]G -------------------------------------------------------------------------------- Time 5.45 secs. ******************************************************************************** ******************************************************************************** MOTIF ARAGAAAA MEME-5 width = 8 sites = 2 llr = 21 E-value = 6.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif ARAGAAAA MEME-5 Description -------------------------------------------------------------------------------- Simplified A a5a:aaaa pos.-specific C :::::::: probability G :5:a:::: matrix T :::::::: bits 2.1 * * **** 1.9 * ****** 1.7 * ****** 1.4 * ****** Relative 1.2 * ****** Entropy 1.0 ******** (15.4 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAGAAAA consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAGAAAA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:28175907-28175927 8 1.13e-05 TGAATTT AAAGAAAA AAAGA chr1:178577055-178577075 11 2.37e-05 gcCAGGCATA AGAGAAAA TA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAGAAAA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:28175907-28175927 1.1e-05 7_[+5]_5 chr1:178577055-178577075 2.4e-05 10_[+5]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAGAAAA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ARAGAAAA width=8 seqs=2 chr3:28175907-28175927 ( 8) AAAGAAAA 1 chr1:178577055-178577075 ( 11) AGAGAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAGAAAA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.6653 E= 6.5e+003 206 -765 -765 -765 107 -765 94 -765 206 -765 -765 -765 -765 -765 193 -765 206 -765 -765 -765 206 -765 -765 -765 206 -765 -765 -765 206 -765 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAGAAAA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 6.5e+003 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAGAAAA MEME-5 regular expression -------------------------------------------------------------------------------- A[AG]AGAAAA -------------------------------------------------------------------------------- Time 6.11 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:109390117-109390137 9.85e-01 20 chr2:58269846-58269866 3.51e-03 20 chr2:58467895-58467915 7.22e-03 20 chr7:83176998-83177018 7.04e-04 3_[+1(5.95e-05)]_9 chr15:80326011-80326031 1.06e-01 20 chr17:20943722-20943742 5.34e-01 20 chr6:41246856-41246876 8.81e-02 20 chr2:57986005-57986025 2.24e-02 10_[+1(3.11e-05)]_2 chr14:95758343-95758363 1.65e-01 20 chr13:81291082-81291102 6.42e-02 12_[+2(4.71e-05)] chr17:2167572-2167592 6.88e-02 20 chr3:99587347-99587367 3.29e-01 20 chr1:117098556-117098576 3.54e-01 20 chr2:149876446-149876466 8.78e-01 20 chr4:106558762-106558782 4.77e-03 20 chr1:94057466-94057486 6.39e-02 20 chr8:61532717-61532737 5.74e-04 11_[+3(1.25e-05)]_1 chr1:235113841-235113861 3.03e-02 2_[+1(9.33e-05)]_10 chr6:24284097-24284117 2.61e-01 20 chr1:40311438-40311458 2.21e-01 20 chr5:141603357-141603377 1.11e-01 20 chr1:183014599-183014619 4.58e-02 20 chr9:2602955-2602975 6.24e-03 1_[+1(3.11e-05)]_11 chr12:56544542-56544562 5.76e-04 4_[+1(5.95e-05)]_8 chr5:85326773-85326793 8.79e-02 20 chr9:38227202-38227222 9.99e-01 20 chr12:8396069-8396089 1.46e-01 12_[+2(7.87e-05)] chr8:81209455-81209475 2.13e-01 20 chr8:61720462-61720482 3.54e-02 20 chr2:8893890-8893910 1.01e-02 6_[+2(3.07e-05)]_6 chr1:183658988-183659008 1.75e-01 20 chr6:158267454-158267474 5.16e-02 20 chr19:7764456-7764476 1.26e-01 20 chr3:28175907-28175927 2.34e-05 7_[+5(1.13e-05)]_5 chr22:25883122-25883142 8.50e-03 3_[+1(9.33e-05)]_9 chr14:72323307-72323327 7.55e-03 20 chr7:13572155-13572175 2.02e-01 20 chr5:176831315-176831335 2.81e-01 20 chr3:138735703-138735723 2.60e-02 20 chr1:44302325-44302345 1.00e+00 20 chr11:111667911-11166793 1.30e-01 20 chr3:29468361-29468381 5.09e-02 [+1(9.33e-05)]_12 chr14:58797973-58797993 5.13e-01 20 chr5:158522029-158522049 2.22e-02 20 chr16:1321977-1321997 1.17e-01 20 chr1:79086017-79086037 9.87e-01 20 chr1:223724114-223724134 9.99e-01 20 chr7:75932825-75932845 2.07e-01 20 chr11:13127038-13127058 9.79e-01 20 chr9:111648395-111648415 2.05e-01 20 chr4:148978320-148978340 3.34e-04 20 chr14:103607228-10360724 7.66e-01 20 chr11:114030904-11403092 3.25e-01 20 chr2:208591149-208591169 6.44e-04 20 chr19:10382365-10382385 1.58e-02 8_[+2(3.07e-05)]_4 chr10:17272334-17272354 7.86e-02 20 chr9:130770000-130770020 9.57e-02 20 chr11:107612007-10761202 5.29e-01 20 chr6:89371960-89371980 2.53e-03 9_[+1(3.11e-05)]_3 chr9:102429045-102429065 6.91e-01 20 chr5:10601557-10601577 4.56e-02 20 chr7:104524742-104524762 2.65e-01 20 chr14:74239080-74239100 3.72e-01 20 chr2:86502090-86502110 3.43e-02 20 chr11:72125420-72125440 1.04e-03 5_[+1(3.11e-05)]_7 chr21:35916398-35916418 3.25e-03 3_[+2(1.52e-05)]_9 chr10:22013857-22013877 1.22e-01 20 chr6:15265839-15265859 3.52e-02 20 chr1:202555793-202555813 2.10e-01 20 chr1:203595851-203595871 3.33e-01 20 chr10:34047409-34047429 1.44e-01 20 chr1:178577055-178577075 9.68e-04 10_[+5(2.37e-05)]_2 chr6:86310650-86310670 3.29e-03 8_[+1(3.11e-05)]_4 chr11:71752150-71752170 1.03e-01 20 chr2:226139682-226139702 5.29e-03 10_[+1(5.95e-05)]_2 chr14:31496181-31496201 9.49e-01 20 chr8:64112746-64112766 1.84e-01 20 chr20:6613029-6613049 1.83e-01 20 chr22:42356611-42356631 7.21e-01 20 chr21:30451682-30451702 4.59e-01 20 chr6:37208141-37208161 1.44e-01 20 chr12:121085016-12108503 1.27e-01 20 chr17:78193397-78193417 6.94e-01 20 chr19:40195079-40195099 8.03e-01 20 chr15:85901238-85901258 6.57e-02 5_[+2(3.07e-05)]_7 chr3:105247047-105247067 9.45e-01 20 chr2:226135690-226135710 7.00e-03 20 chr14:107253850-10725387 8.22e-01 20 chr14:77506795-77506815 7.15e-02 20 chr1:40698250-40698270 3.23e-02 20 chr2:62515201-62515221 1.35e-01 20 chr8:130694470-130694490 5.05e-05 20 chr9:130742118-130742138 5.46e-01 20 chr1:1774417-1774437 9.99e-01 20 chr17:58679445-58679465 4.35e-03 7_[+1(3.11e-05)]_5 chr2:96810379-96810399 2.52e-01 20 chr7:41865716-41865736 1.87e-03 20 chr11:85894318-85894338 1.09e-04 7_[+3(1.25e-05)]_5 chr2:242383414-242383434 1.09e-01 20 chr20:62611365-62611385 6.25e-01 20 chrX:55893909-55893929 3.06e-01 20 chr20:35096227-35096247 9.86e-01 20 chr14:78047479-78047499 6.97e-01 20 chr1:46341855-46341875 2.96e-03 1_[+1(3.11e-05)]_11 chr3:31503819-31503839 6.28e-02 20 chr5:150460995-150461015 1.06e-02 20 chr16:23530139-23530159 2.73e-01 20 chr1:145772331-145772351 1.34e-01 20 chr2:240190936-240190956 7.55e-01 20 chr14:100396971-10039699 3.13e-02 20 chr1:181096424-181096444 5.44e-02 [+1(9.33e-05)]_12 chr19:47786873-47786893 2.59e-01 20 chr8:29999317-29999337 8.91e-02 20 chr5:53545658-53545678 5.14e-01 20 chr18:20714617-20714637 2.76e-02 20 chr1:179262738-179262758 2.27e-02 20 chr7:102948435-102948455 4.84e-01 20 chr11:32110032-32110052 3.58e-01 20 chr20:35185054-35185074 5.80e-02 20 chr5:108804618-108804638 1.59e-01 20 chr22:36766072-36766092 4.19e-02 3_[+2(7.87e-05)]_9 chr15:96438000-96438020 1.30e-01 20 chr11:121238309-12123832 1.52e-01 20 chr10:89852904-89852924 5.92e-01 20 chr8:8483516-8483536 3.48e-01 20 chr11:50017331-50017351 2.00e-01 20 chr1:112060325-112060345 6.98e-01 20 chr6:157112548-157112568 9.66e-01 20 chr7:37121242-37121262 6.46e-02 20 chr12:72535386-72535406 9.98e-01 20 chr5:96264792-96264812 1.18e-02 20 chr11:115933321-11593334 9.42e-01 20 chr2:234422792-234422812 2.99e-03 20 chr1:234659502-234659522 6.60e-01 20 chr9:36148834-36148854 5.21e-02 5_[+1(9.33e-05)]_7 chr1:82691307-82691327 1.86e-02 20 chr17:47817282-47817302 9.11e-01 20 chr15:84768042-84768062 4.41e-01 20 chr7:37955165-37955185 1.18e-01 20 chr15:80194483-80194503 2.32e-01 20 chr6:147021360-147021380 1.86e-01 20 chr14:34034433-34034453 1.00e+00 20 chr5:74870789-74870809 3.00e-02 20 chr7:30278703-30278723 5.53e-02 20 chr6:160351141-160351161 1.95e-01 20 chr2:111984755-111984775 3.29e-03 20 chr11:119622583-11962260 1.17e-01 20 chr12:118795415-11879543 8.23e-01 20 chr3:69135441-69135461 7.34e-02 8_[+1(9.33e-05)]_4 chr2:148397592-148397612 2.82e-01 20 chr6:113964494-113964514 1.92e-01 20 chr4:26374600-26374620 1.37e-03 20 chr17:16311807-16311827 2.90e-01 20 chr12:31789809-31789829 2.14e-01 20 chr2:96809078-96809098 1.42e-01 20 chr3:13050985-13051005 5.37e-01 20 chr5:37738349-37738369 9.90e-01 20 chr19:49378270-49378290 6.29e-01 20 chr6:143172361-143172381 7.16e-02 20 chr11:117802861-11780288 7.27e-03 20 chr6:80842890-80842910 3.79e-02 20 chr6:29934040-29934060 8.96e-02 20 chr2:136894237-136894257 1.66e-01 20 chr3:49383184-49383204 2.51e-01 20 chr10:64286991-64287011 4.37e-01 20 chr15:31556345-31556365 6.72e-03 20 chr17:34415497-34415517 8.47e-01 20 chr1:113243597-113243617 7.11e-02 20 chr10:90146209-90146229 8.34e-01 20 chr1:27004244-27004264 4.24e-02 20 chr1:160492838-160492858 2.81e-03 20 chr2:26420090-26420110 1.51e-02 20 chr15:67058307-67058327 2.61e-01 20 chr5:153603091-153603111 2.26e-03 [+1(5.95e-05)]_12 chr8:81055723-81055743 3.76e-01 20 chr1:111323691-111323711 1.90e-01 20 chr12:1715317-1715337 4.61e-01 20 chr12:11975221-11975241 1.44e-01 20 chr5:139675199-139675219 2.19e-03 20 chr9:133806949-133806969 5.41e-07 3_[+4(2.47e-05)]_9 chr19:48836628-48836648 1.94e-02 11_[+2(3.07e-05)]_1 chr1:209826641-209826661 3.61e-01 20 chr17:45646452-45646472 5.35e-01 20 chr1:210573458-210573478 1.57e-01 20 chr14:56014189-56014209 1.47e-02 20 chr4:77119713-77119733 8.09e-02 20 chr3:47032173-47032193 6.66e-01 20 chr9:115977577-115977597 9.72e-01 20 chr19:30162899-30162919 8.96e-01 20 chr8:120099939-120099959 4.01e-02 20 chr11:62366675-62366695 7.88e-02 20 chr11:3071053-3071073 5.50e-01 20 chr3:107688985-107689005 1.35e-01 20 chr22:27067437-27067457 1.52e-02 20 chr11:117685732-11768575 2.75e-01 20 chr12:14556781-14556801 5.20e-01 20 chr1:25889199-25889219 4.37e-01 20 chr5:142562816-142562836 2.69e-01 20 chr12:57030734-57030754 2.48e-02 20 chr4:83718297-83718317 1.93e-01 20 chr15:33191368-33191388 1.52e-01 20 chr17:1640124-1640144 3.65e-01 20 chr19:6534107-6534127 7.65e-01 20 chr11:65267957-65267977 4.97e-01 20 chr17:27369761-27369781 4.41e-02 20 chr5:41747530-41747550 2.74e-01 20 chr14:73931916-73931936 4.15e-01 20 chr4:38818101-38818121 9.62e-02 20 chr17:37832590-37832610 1.07e-01 20 chr19:34709399-34709419 9.69e-01 20 chr10:79442900-79442920 4.93e-02 20 chr2:219187535-219187555 4.99e-01 20 chr5:60704560-60704580 3.94e-02 20 chr22:37616706-37616726 2.20e-02 20 chr10:120458045-12045806 3.47e-01 20 chr1:153936377-153936397 3.83e-01 20 chr12:9913428-9913448 8.34e-01 20 chr18:58756158-58756178 4.73e-01 20 chr1:31950126-31950146 4.50e-02 [+1(3.11e-05)]_12 chr17:36375505-36375525 3.01e-03 9_[+2(1.52e-05)]_3 chr20:36809665-36809685 9.11e-01 20 chr4:186104938-186104958 9.58e-01 20 chr9:38182528-38182548 1.26e-01 20 chr10:74124180-74124200 4.55e-01 20 chr6:105930285-105930305 6.57e-01 20 chr4:166176734-166176754 5.16e-01 20 chr8:94948175-94948195 9.71e-01 20 chr21:26874528-26874548 9.08e-02 20 chr3:185300765-185300785 9.72e-01 20 chr15:65176590-65176610 6.70e-02 20 chr7:106371788-106371808 2.45e-04 1_[+4(1.22e-05)]_11 chr3:196189989-196190009 3.80e-01 20 chr19:6801939-6801959 7.92e-01 20 chr8:96103493-96103513 7.78e-02 20 chr7:107852370-107852390 2.38e-01 20 chr6:43597888-43597908 2.94e-04 9_[+2(4.71e-05)]_3 chr7:72147913-72147933 8.15e-01 20 chr1:234738755-234738775 5.70e-01 20 chr2:130569781-130569801 7.01e-01 20 chr2:70359846-70359866 2.55e-03 3_[+5(7.94e-05)]_9 chr18:43336160-43336180 2.99e-05 2_[+1(3.11e-05)]_10 chr6:141873831-141873851 3.11e-01 20 chr12:96441580-96441600 9.59e-01 20 chr4:9966681-9966701 4.02e-01 20 chr1:168435555-168435575 4.15e-01 20 chr17:56407791-56407811 6.61e-01 20 chr6:64247466-64247486 2.50e-03 1_[+1(5.95e-05)]_11 chr12:31905436-31905456 9.89e-01 20 chr8:29208022-29208042 8.57e-01 20 chr5:111093141-111093161 9.92e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n04.farnam.hpc.yale.internal ********************************************************************************