******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/SIX5.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr1:154979457-154979477 1.0000 20 chr17:40559707-40559727 1.0000 20 chr19:55817022-55817042 1.0000 20 chr19:48907050-48907070 1.0000 20 chr19:49248645-49248665 1.0000 20 chr19:49148222-49148242 1.0000 20 chr19:49310053-49310073 1.0000 20 chr16:30908491-30908511 1.0000 20 chr19:49479623-49479643 1.0000 20 chr19:49416552-49416572 1.0000 20 chr9:131965201-131965221 1.0000 20 chr19:49224384-49224404 1.0000 20 chr19:49404510-49404530 1.0000 20 chr19:54682387-54682407 1.0000 20 chr19:49013959-49013979 1.0000 20 chr19:507916-507936 1.0000 20 chr11:60681342-60681362 1.0000 20 chr6:31866341-31866361 1.0000 20 chr17:7118441-7118461 1.0000 20 chr19:42463572-42463592 1.0000 20 chr19:49362038-49362058 1.0000 20 chr19:48866462-48866482 1.0000 20 chr19:49228278-49228298 1.0000 20 chr11:46134711-46134731 1.0000 20 chr6:10147373-10147393 1.0000 20 chr1:224544463-224544483 1.0000 20 chr19:55709077-55709097 1.0000 20 chr6:43215052-43215072 1.0000 20 chr19:45908771-45908791 1.0000 20 chr7:150689977-150689997 1.0000 20 chr19:45988744-45988764 1.0000 20 chr3:14166407-14166427 1.0000 20 chr1:243418811-243418831 1.0000 20 chr17:7094972-7094992 1.0000 20 chr19:49250518-49250538 1.0000 20 chr16:58426756-58426776 1.0000 20 chr2:86332721-86332741 1.0000 20 chr10:111985617-11198563 1.0000 20 chr9:97021512-97021532 1.0000 20 chr19:44809220-44809240 1.0000 20 chr19:48833461-48833481 1.0000 20 chr8:82755049-82755069 1.0000 20 chr16:31045677-31045697 1.0000 20 chr2:38893018-38893038 1.0000 20 chr17:7358846-7358866 1.0000 20 chr12:133532909-13353292 1.0000 20 chr16:68482619-68482639 1.0000 20 chr19:55831309-55831329 1.0000 20 chr16:30103289-30103309 1.0000 20 chr1:2457689-2457709 1.0000 20 chr15:63481600-63481620 1.0000 20 chr19:48922706-48922726 1.0000 20 chr19:52097776-52097796 1.0000 20 chr6:157801114-157801134 1.0000 20 chr19:38397773-38397793 1.0000 20 chr19:50651577-50651597 1.0000 20 chr12:54582873-54582893 1.0000 20 chr2:172543926-172543946 1.0000 20 chr5:178286914-178286934 1.0000 20 chr12:56710164-56710184 1.0000 20 chr19:46027187-46027207 1.0000 20 chr6:43597120-43597140 1.0000 20 chr19:49485731-49485751 1.0000 20 chr1:6673658-6673678 1.0000 20 chr16:46918165-46918185 1.0000 20 chr11:66138901-66138921 1.0000 20 chr17:19912596-19912616 1.0000 20 chr19:49486882-49486902 1.0000 20 chr3:183735787-183735807 1.0000 20 chr4:104021026-104021046 1.0000 20 chr17:76250689-76250709 1.0000 20 chr12:122985580-12298560 1.0000 20 chr2:27319287-27319307 1.0000 20 chr19:49422173-49422193 1.0000 20 chr16:70473232-70473252 1.0000 20 chr8:144699790-144699810 1.0000 20 chr1:244816103-244816123 1.0000 20 chr4:2538170-2538190 1.0000 20 chr20:62694403-62694423 1.0000 20 chr19:54618740-54618760 1.0000 20 chr2:170430445-170430465 1.0000 20 chr12:104323528-10432354 1.0000 20 chrX:106362069-106362089 1.0000 20 chr17:4634629-4634649 1.0000 20 chr10:74870189-74870209 1.0000 20 chr5:178157741-178157761 1.0000 20 chr1:47799927-47799947 1.0000 20 chrX:47050112-47050132 1.0000 20 chr18:9913601-9913621 1.0000 20 chr4:18023827-18023847 1.0000 20 chr1:155113030-155113050 1.0000 20 chr12:13197293-13197313 1.0000 20 chr12:861550-861570 1.0000 20 chr10:92631682-92631702 1.0000 20 chr19:49017257-49017277 1.0000 20 chr13:52188861-52188881 1.0000 20 chr19:58838314-58838334 1.0000 20 chr1:23695391-23695411 1.0000 20 chr19:7616380-7616400 1.0000 20 chr10:104262646-10426266 1.0000 20 chr3:183892451-183892471 1.0000 20 chr5:85913663-85913683 1.0000 20 chr12:49449948-49449968 1.0000 20 chr13:41838020-41838040 1.0000 20 chr2:232646340-232646360 1.0000 20 chr19:55690536-55690556 1.0000 20 chr2:73053206-73053226 1.0000 20 chr2:54950578-54950598 1.0000 20 chr17:73780735-73780755 1.0000 20 chr19:57946579-57946599 1.0000 20 chr1:1051588-1051608 1.0000 20 chr11:64456075-64456095 1.0000 20 chr19:50163191-50163211 1.0000 20 chr11:134123354-13412337 1.0000 20 chr5:173043763-173043783 1.0000 20 chr19:49385171-49385191 1.0000 20 chrX:48931707-48931727 1.0000 20 chr10:44144357-44144377 1.0000 20 chr6:5003938-5003958 1.0000 20 chr9:34377174-34377194 1.0000 20 chr8:124054139-124054159 1.0000 20 chr19:2457019-2457039 1.0000 20 chr20:33735202-33735222 1.0000 20 chr19:40315329-40315349 1.0000 20 chr19:4304559-4304579 1.0000 20 chr14:65569319-65569339 1.0000 20 chr10:38383196-38383216 1.0000 20 chr1:247095541-247095561 1.0000 20 chr7:100888073-100888093 1.0000 20 chr15:64386193-64386213 1.0000 20 chr12:67662622-67662642 1.0000 20 chr7:75988645-75988665 1.0000 20 chr1:243419244-243419264 1.0000 20 chr3:46037347-46037367 1.0000 20 chr2:23598506-23598526 1.0000 20 chr15:75182341-75182361 1.0000 20 chr10:43048375-43048395 1.0000 20 chr7:93633706-93633726 1.0000 20 chr19:55815834-55815854 1.0000 20 chr2:39005307-39005327 1.0000 20 chr19:3761712-3761732 1.0000 20 chr2:37193774-37193794 1.0000 20 chr20:47805054-47805074 1.0000 20 chr14:82000489-82000509 1.0000 20 chr1:151584420-151584440 1.0000 20 chr6:52929659-52929679 1.0000 20 chr21:35288174-35288194 1.0000 20 chr13:26827974-26827994 1.0000 20 chr19:55629117-55629137 1.0000 20 chr16:15150063-15150083 1.0000 20 chr19:44598450-44598470 1.0000 20 chr1:156052301-156052321 1.0000 20 chr3:4344972-4344992 1.0000 20 chr4:8160703-8160723 1.0000 20 chr1:45806155-45806175 1.0000 20 chr19:49469230-49469250 1.0000 20 chr7:106239381-106239401 1.0000 20 chr16:67840625-67840645 1.0000 20 chr6:42531623-42531643 1.0000 20 chr1:147142691-147142711 1.0000 20 chr12:110151349-11015136 1.0000 20 chr1:22110167-22110187 1.0000 20 chr7:150755110-150755130 1.0000 20 chr4:2420578-2420598 1.0000 20 chr11:16760092-16760112 1.0000 20 chr13:52157993-52158013 1.0000 20 chr11:919227-919247 1.0000 20 chr16:53468315-53468335 1.0000 20 chr9:134955302-134955322 1.0000 20 chr1:54519175-54519195 1.0000 20 chr17:38083903-38083923 1.0000 20 chr1:205744636-205744656 1.0000 20 chr17:40950758-40950778 1.0000 20 chr5:131526049-131526069 1.0000 20 chr3:49466771-49466791 1.0000 20 chr12:1913816-1913836 1.0000 20 chr1:38412737-38412757 1.0000 20 chr10:38265621-38265641 1.0000 20 chr6:11093958-11093978 1.0000 20 chr16:30939351-30939371 1.0000 20 chr19:47354311-47354331 1.0000 20 chr2:242089772-242089792 1.0000 20 chr19:44507020-44507040 1.0000 20 chr17:40273398-40273418 1.0000 20 chr8:124253646-124253666 1.0000 20 chr16:30786759-30786779 1.0000 20 chr9:102861393-102861413 1.0000 20 chr14:68286425-68286445 1.0000 20 chr19:49947107-49947127 1.0000 20 chr9:138853289-138853309 1.0000 20 chr19:49223949-49223969 1.0000 20 chr11:65488331-65488351 1.0000 20 chr19:1905291-1905311 1.0000 20 chr11:36615956-36615976 1.0000 20 chr2:44001133-44001153 1.0000 20 chr19:44617458-44617478 1.0000 20 chr7:120590662-120590682 1.0000 20 chr22:20748360-20748380 1.0000 20 chr16:686398-686418 1.0000 20 chr19:10990002-10990022 1.0000 20 chr3:57741866-57741886 1.0000 20 chr3:32147924-32147944 1.0000 20 chr17:17936937-17936957 1.0000 20 chr17:40075375-40075395 1.0000 20 chr11:73662006-73662026 1.0000 20 chr1:155990757-155990777 1.0000 20 chr9:115819035-115819055 1.0000 20 chr3:50397091-50397111 1.0000 20 chr1:179846979-179846999 1.0000 20 chr16:4321914-4321934 1.0000 20 chr16:30934686-30934706 1.0000 20 chr8:99129461-99129481 1.0000 20 chr12:9102608-9102628 1.0000 20 chr2:172290726-172290746 1.0000 20 chr19:48832926-48832946 1.0000 20 chr5:55008192-55008212 1.0000 20 chr7:140098337-140098357 1.0000 20 chr1:115300193-115300213 1.0000 20 chr13:30881239-30881259 1.0000 20 chr9:104161018-104161038 1.0000 20 chr1:203240332-203240352 1.0000 20 chr21:15755558-15755578 1.0000 20 chr3:129409373-129409393 1.0000 20 chr16:58270491-58270511 1.0000 20 chr11:64015012-64015032 1.0000 20 chr3:69788478-69788498 1.0000 20 chr9:132346512-132346532 1.0000 20 chr14:59655254-59655274 1.0000 20 chr2:180872071-180872091 1.0000 20 chr22:41840508-41840528 1.0000 20 chr16:29687611-29687631 1.0000 20 chr5:157286179-157286199 1.0000 20 chr12:32832113-32832133 1.0000 20 chr14:102430729-10243074 1.0000 20 chr22:39886351-39886371 1.0000 20 chr15:79165126-79165146 1.0000 20 chrX:106045806-106045826 1.0000 20 chr2:97202325-97202345 1.0000 20 chr19:46366558-46366578 1.0000 20 chr3:101443757-101443777 1.0000 20 chr9:7799827-7799847 1.0000 20 chr2:68694520-68694540 1.0000 20 chr19:36208447-36208467 1.0000 20 chr13:31736534-31736554 1.0000 20 chr19:10828090-10828110 1.0000 20 chr18:71815703-71815723 1.0000 20 chr20:49084724-49084744 1.0000 20 chr7:111846547-111846567 1.0000 20 chr8:145159818-145159838 1.0000 20 chr2:74753520-74753540 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_SIX5/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/SIX5.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.193 C 0.308 G 0.32 T 0.179 Background letter frequencies (from file dataset with add-one prior applied): A 0.193 C 0.308 G 0.32 T 0.179 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TBCTGGGA MEME-1 width = 8 sites = 21 llr = 184 E-value = 3.4e-012 ******************************************************************************** -------------------------------------------------------------------------------- Motif TBCTGGGA MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::::a pos.-specific C 129::::: probability G :31:aaa: matrix T 94:a:::: bits 2.5 * 2.2 * * 2.0 * * 1.7 * *** * Relative 1.5 * ***** Entropy 1.2 * ***** (12.6 bits) 1.0 * ****** 0.7 * ****** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTCTGGGA consensus G sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TBCTGGGA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:46366558-46366578 12 1.12e-05 CGGCTAGGCC TTCTGGGA A chr19:44617458-44617478 12 1.12e-05 TCCCAGGGAA TTCTGGGA A chr17:38083903-38083923 7 1.12e-05 GACGCC TTCTGGGA GTTGTA chr10:74870189-74870209 8 1.12e-05 AGGAGGA TTCTGGGA AGTGT chr2:74753520-74753540 12 3.11e-05 GTGAAAGGCA TGCTGGGA C chr13:31736534-31736554 2 3.11e-05 A TGCTGGGA TGTGTAGTCC chr17:40075375-40075395 11 3.11e-05 CCCCGGGGCC TGCTGGGA CT chr19:10990002-10990022 13 3.11e-05 ctgcaaggga tgctggga chr19:3761712-3761732 3 3.11e-05 CC TGCTGGGA AATGTAGTTC chr12:49449948-49449968 6 3.11e-05 AAGCA TGCTGGGA GTTGTAG chr4:104021026-104021046 11 3.11e-05 TAATAATGCA TGCTGGGA TT chr2:172290726-172290746 4 5.04e-05 AGT TCCTGGGA GAAGCCGGG chr16:30786759-30786779 2 5.04e-05 A TCCTGGGA AGTGTAGTTC chr11:64015012-64015032 3 6.20e-05 GC TTGTGGGA AACGGAGTCC chr19:10828090-10828110 12 8.12e-05 CTGAGATGCG CTCTGGGA C chr9:134955302-134955322 11 8.12e-05 CTCCGAAGAC CTCTGGGA AA chr19:49486882-49486902 2 8.79e-05 G TTCTGGAA CATATAGAGC chr3:69788478-69788498 5 1.29e-04 GTTT TCGTGGGA GCGGCTCC chr11:134123354-13412337 13 1.29e-04 TTGTTAGGGC TCGTGGGA chr19:48907050-48907070 5 1.75e-04 TGCC TTCAGGGA ACCAGTCC chr7:93633706-93633726 13 2.20e-04 CTCATTGGAG CCCTGGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TBCTGGGA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:46366558-46366578 1.1e-05 11_[+1]_1 chr19:44617458-44617478 1.1e-05 11_[+1]_1 chr17:38083903-38083923 1.1e-05 6_[+1]_6 chr10:74870189-74870209 1.1e-05 7_[+1]_5 chr2:74753520-74753540 3.1e-05 11_[+1]_1 chr13:31736534-31736554 3.1e-05 1_[+1]_11 chr17:40075375-40075395 3.1e-05 10_[+1]_2 chr19:10990002-10990022 3.1e-05 12_[+1] chr19:3761712-3761732 3.1e-05 2_[+1]_10 chr12:49449948-49449968 3.1e-05 5_[+1]_7 chr4:104021026-104021046 3.1e-05 10_[+1]_2 chr2:172290726-172290746 5e-05 3_[+1]_9 chr16:30786759-30786779 5e-05 1_[+1]_11 chr11:64015012-64015032 6.2e-05 2_[+1]_10 chr19:10828090-10828110 8.1e-05 11_[+1]_1 chr9:134955302-134955322 8.1e-05 10_[+1]_2 chr19:49486882-49486902 8.8e-05 1_[+1]_11 chr3:69788478-69788498 0.00013 4_[+1]_8 chr11:134123354-13412337 0.00013 12_[+1] chr19:48907050-48907070 0.00018 4_[+1]_8 chr7:93633706-93633726 0.00022 12_[+1] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TBCTGGGA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TBCTGGGA width=8 seqs=21 chr19:46366558-46366578 ( 12) TTCTGGGA 1 chr19:44617458-44617478 ( 12) TTCTGGGA 1 chr17:38083903-38083923 ( 7) TTCTGGGA 1 chr10:74870189-74870209 ( 8) TTCTGGGA 1 chr2:74753520-74753540 ( 12) TGCTGGGA 1 chr13:31736534-31736554 ( 2) TGCTGGGA 1 chr17:40075375-40075395 ( 11) TGCTGGGA 1 chr19:10990002-10990022 ( 13) TGCTGGGA 1 chr19:3761712-3761732 ( 3) TGCTGGGA 1 chr12:49449948-49449968 ( 6) TGCTGGGA 1 chr4:104021026-104021046 ( 11) TGCTGGGA 1 chr2:172290726-172290746 ( 4) TCCTGGGA 1 chr16:30786759-30786779 ( 2) TCCTGGGA 1 chr11:64015012-64015032 ( 3) TTGTGGGA 1 chr19:10828090-10828110 ( 12) CTCTGGGA 1 chr9:134955302-134955322 ( 11) CTCTGGGA 1 chr19:49486882-49486902 ( 2) TTCTGGAA 1 chr3:69788478-69788498 ( 5) TCGTGGGA 1 chr11:134123354-13412337 ( 13) TCGTGGGA 1 chr19:48907050-48907070 ( 5) TTCAGGGA 1 chr7:93633706-93633726 ( 13) CCCTGGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TBCTGGGA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.57119 E= 3.4e-012 -1104 -111 -1104 226 -1104 -37 6 126 -1104 148 -116 -1104 -202 -1104 -1104 241 -1104 -1104 164 -1104 -1104 -1104 164 -1104 -202 -1104 157 -1104 237 -1104 -1104 -1104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TBCTGGGA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 3.4e-012 0.000000 0.142857 0.000000 0.857143 0.000000 0.238095 0.333333 0.428571 0.000000 0.857143 0.142857 0.000000 0.047619 0.000000 0.000000 0.952381 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.047619 0.000000 0.952381 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TBCTGGGA MEME-1 regular expression -------------------------------------------------------------------------------- T[TGC]CTGGGA -------------------------------------------------------------------------------- Time 3.15 secs. ******************************************************************************** ******************************************************************************** MOTIF CTACAAST MEME-2 width = 8 sites = 17 llr = 153 E-value = 2.6e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTACAAST MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::9:a6:: pos.-specific C a:18:161 probability G :::2:13: matrix T :a:::219 bits 2.5 * * 2.2 * * * 2.0 ** * * 1.7 *** * * Relative 1.5 *** * * Entropy 1.2 *** * * (13.0 bits) 1.0 ***** * 0.7 ****** * 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTACAACT consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTACAAST MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:49223949-49223969 13 6.73e-06 GGGATAAGAA CTACAACT chr5:173043763-173043783 12 6.73e-06 CCGAGAGAAA CTACAACT C chr11:64456075-64456095 11 6.73e-06 CGACTGGGAA CTACAACT CC chr6:43597120-43597140 12 6.73e-06 CGTCGCCGCC CTACAACT C chr14:102430729-10243074 2 1.37e-05 A CTACAAGT CCCAGAAGGG chr15:63481600-63481620 2 1.37e-05 A CTACAAGT CCCATGAAGT chr2:97202325-97202345 2 1.76e-05 A CTACAATT CCCAGAGGTC chr16:70473232-70473252 7 2.39e-05 CCAGGA CTACATCT CCCAGA chr9:102861393-102861413 4 3.09e-05 CAT CTAGAACT TCCTTTCCC chr11:60681342-60681362 10 3.09e-05 TTTGTAGCT CTAGAACT ACA chr3:32147924-32147944 1 3.74e-05 . CTACATGT CCCGACGTGC chr6:10147373-10147393 7 4.81e-05 caagga ctacacct cccagg chr16:4321914-4321934 3 9.19e-05 AA CTACAGCT CCCGCGAGGC chr12:133532909-13353292 12 9.81e-05 CGCGCTGGAA CTACACTT C chr7:150755110-150755130 5 1.20e-04 AAGA CTACAACC CCCAGCCG chr9:132346512-132346532 9 1.27e-04 ccttgctg ctagatgt gacc chr1:243418811-243418831 6 1.71e-04 GCCAA CTCCAAGT GAAGGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTACAAST MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:49223949-49223969 6.7e-06 12_[+2] chr5:173043763-173043783 6.7e-06 11_[+2]_1 chr11:64456075-64456095 6.7e-06 10_[+2]_2 chr6:43597120-43597140 6.7e-06 11_[+2]_1 chr14:102430729-10243074 1.4e-05 1_[+2]_11 chr15:63481600-63481620 1.4e-05 1_[+2]_11 chr2:97202325-97202345 1.8e-05 1_[+2]_11 chr16:70473232-70473252 2.4e-05 6_[+2]_6 chr9:102861393-102861413 3.1e-05 3_[+2]_9 chr11:60681342-60681362 3.1e-05 9_[+2]_3 chr3:32147924-32147944 3.7e-05 [+2]_12 chr6:10147373-10147393 4.8e-05 6_[+2]_6 chr16:4321914-4321934 9.2e-05 2_[+2]_10 chr12:133532909-13353292 9.8e-05 11_[+2]_1 chr7:150755110-150755130 0.00012 4_[+2]_8 chr9:132346512-132346532 0.00013 8_[+2]_4 chr1:243418811-243418831 0.00017 5_[+2]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTACAAST MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTACAAST width=8 seqs=17 chr19:49223949-49223969 ( 13) CTACAACT 1 chr5:173043763-173043783 ( 12) CTACAACT 1 chr11:64456075-64456095 ( 11) CTACAACT 1 chr6:43597120-43597140 ( 12) CTACAACT 1 chr14:102430729-10243074 ( 2) CTACAAGT 1 chr15:63481600-63481620 ( 2) CTACAAGT 1 chr2:97202325-97202345 ( 2) CTACAATT 1 chr16:70473232-70473252 ( 7) CTACATCT 1 chr9:102861393-102861413 ( 4) CTAGAACT 1 chr11:60681342-60681362 ( 10) CTAGAACT 1 chr3:32147924-32147944 ( 1) CTACATGT 1 chr6:10147373-10147393 ( 7) CTACACCT 1 chr16:4321914-4321934 ( 3) CTACAGCT 1 chr12:133532909-13353292 ( 12) CTACACTT 1 chr7:150755110-150755130 ( 5) CTACAACC 1 chr9:132346512-132346532 ( 9) CTAGATGT 1 chr1:243418811-243418831 ( 6) CTCCAAGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTACAAST MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.64109 E= 2.6e-008 -1073 170 -1073 -1073 -1073 -1073 -1073 248 228 -239 -1073 -1073 -1073 142 -86 -1073 237 -1073 -1073 -1073 174 -139 -244 -2 -1073 93 -12 -60 -1073 -239 -1073 240 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTACAAST MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 2.6e-008 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.941176 0.058824 0.000000 0.000000 0.000000 0.823529 0.176471 0.000000 1.000000 0.000000 0.000000 0.000000 0.647059 0.117647 0.058824 0.176471 0.000000 0.588235 0.294118 0.117647 0.000000 0.058824 0.000000 0.941176 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTACAAST MEME-2 regular expression -------------------------------------------------------------------------------- CTACAA[CG]T -------------------------------------------------------------------------------- Time 3.86 secs. ******************************************************************************** ******************************************************************************** MOTIF HTGTAGTT MEME-3 width = 8 sites = 14 llr = 127 E-value = 5.2e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif HTGTAGTT MEME-3 Description -------------------------------------------------------------------------------- Simplified A 2:11a::: pos.-specific C 3:::::13 probability G 1:9::a:: matrix T 4a:9::97 bits 2.5 * * 2.2 * * 2.0 * ** 1.7 * **** Relative 1.5 * ***** Entropy 1.2 ******* (13.1 bits) 1.0 ******* 0.7 ******* 0.5 ******* 0.2 ******** 0.0 -------- Multilevel TTGTAGTT consensus C C sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HTGTAGTT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:111846547-111846567 8 3.63e-06 CTGGGAA TTGTAGTT CTTGG chr19:48832926-48832946 5 3.63e-06 GGAC TTGTAGTT TTCAGTGG chr19:3761712-3761732 12 7.55e-06 CTGCTGGGAA ATGTAGTT C chr8:99129461-99129481 7 1.38e-05 TGGGAA CTGTAGTT TCGGCG chr6:31866341-31866361 3 1.38e-05 AA CTGTAGTT CTCTTTGGTT chr1:244816103-244816123 1 2.00e-05 . TTGTAGTC GAAGGGCTGT chr16:30786759-30786779 11 2.65e-05 ATCCTGGGAA GTGTAGTT CC chr2:23598506-23598526 9 3.94e-05 GCTGGGAG ATGTAGTc tcac chr16:68482619-68482639 1 3.94e-05 . TTATAGTT CTTTAAGGAC chr11:60681342-60681362 2 5.64e-05 T TTGTAGCT CTAGAACTAC chr11:46134711-46134731 6 6.97e-05 CTAAT CTGAAGTT AAGCAAA chr13:31736534-31736554 11 9.14e-05 ATGCTGGGAT GTGTAGTC CT chr19:49250518-49250538 7 1.02e-04 CTTTCT CTGTAGCT GACTGA chr15:63481600-63481620 13 1.55e-04 TACAAGTCCC ATGAAGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HTGTAGTT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:111846547-111846567 3.6e-06 7_[+3]_5 chr19:48832926-48832946 3.6e-06 4_[+3]_8 chr19:3761712-3761732 7.5e-06 11_[+3]_1 chr8:99129461-99129481 1.4e-05 6_[+3]_6 chr6:31866341-31866361 1.4e-05 2_[+3]_10 chr1:244816103-244816123 2e-05 [+3]_12 chr16:30786759-30786779 2.7e-05 10_[+3]_2 chr2:23598506-23598526 3.9e-05 8_[+3]_4 chr16:68482619-68482639 3.9e-05 [+3]_12 chr11:60681342-60681362 5.6e-05 1_[+3]_11 chr11:46134711-46134731 7e-05 5_[+3]_7 chr13:31736534-31736554 9.1e-05 10_[+3]_2 chr19:49250518-49250538 0.0001 6_[+3]_6 chr15:63481600-63481620 0.00016 12_[+3] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HTGTAGTT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF HTGTAGTT width=8 seqs=14 chr7:111846547-111846567 ( 8) TTGTAGTT 1 chr19:48832926-48832946 ( 5) TTGTAGTT 1 chr19:3761712-3761732 ( 12) ATGTAGTT 1 chr8:99129461-99129481 ( 7) CTGTAGTT 1 chr6:31866341-31866361 ( 3) CTGTAGTT 1 chr1:244816103-244816123 ( 1) TTGTAGTC 1 chr16:30786759-30786779 ( 11) GTGTAGTT 1 chr2:23598506-23598526 ( 9) ATGTAGTC 1 chr16:68482619-68482639 ( 1) TTATAGTT 1 chr11:60681342-60681362 ( 2) TTGTAGCT 1 chr11:46134711-46134731 ( 6) CTGAAGTT 1 chr13:31736534-31736554 ( 11) GTGTAGTC 1 chr19:49250518-49250538 ( 7) CTGTAGCT 1 chr15:63481600-63481620 ( 13) ATGAAGTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HTGTAGTT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.69581 E= 5.2e-005 15 -11 -116 100 -1045 -1045 -1045 248 -143 -1045 154 -1045 -44 -1045 -1045 226 237 -1045 -1045 -1045 -1045 -1045 164 -1045 -1045 -111 -1045 226 -1045 -11 -1045 200 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HTGTAGTT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 5.2e-005 0.214286 0.285714 0.142857 0.357143 0.000000 0.000000 0.000000 1.000000 0.071429 0.000000 0.928571 0.000000 0.142857 0.000000 0.000000 0.857143 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.142857 0.000000 0.857143 0.000000 0.285714 0.000000 0.714286 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HTGTAGTT MEME-3 regular expression -------------------------------------------------------------------------------- [TCA]TGTAGT[TC] -------------------------------------------------------------------------------- Time 5.34 secs. ******************************************************************************** ******************************************************************************** MOTIF ATCTTTKT MEME-4 width = 8 sites = 2 llr = 24 E-value = 9.5e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATCTTTKT MEME-4 Description -------------------------------------------------------------------------------- Simplified A a::::::: pos.-specific C ::a::::: probability G ::::::5: matrix T :a:aaa5a bits 2.5 ** *** * 2.2 ** *** * 2.0 ** *** * 1.7 ****** * Relative 1.5 ****** * Entropy 1.2 ****** * (17.6 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ATCTTTGT consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCTTTKT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:16760092-16760112 6 1.96e-06 GACAC ATCTTTTT TATTCGG chr12:56710164-56710184 10 5.45e-06 ACCGGACCC ATCTTTGT GAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCTTTKT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:16760092-16760112 2e-06 5_[+4]_7 chr12:56710164-56710184 5.5e-06 9_[+4]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCTTTKT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATCTTTKT width=8 seqs=2 chr11:16760092-16760112 ( 6) ATCTTTTT 1 chr12:56710164-56710184 ( 10) ATCTTTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCTTTKT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.6653 E= 9.5e+002 237 -765 -765 -765 -765 -765 -765 248 -765 169 -765 -765 -765 -765 -765 248 -765 -765 -765 248 -765 -765 -765 248 -765 -765 64 148 -765 -765 -765 248 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCTTTKT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 9.5e+002 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCTTTKT MEME-4 regular expression -------------------------------------------------------------------------------- ATCTTT[GT]T -------------------------------------------------------------------------------- Time 6.07 secs. ******************************************************************************** ******************************************************************************** MOTIF ATTTCCCA MEME-5 width = 8 sites = 2 llr = 24 E-value = 2.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATTTCCCA MEME-5 Description -------------------------------------------------------------------------------- Simplified A a::::::a pos.-specific C ::::aaa: probability G :::::::: matrix T :aaa:::: bits 2.5 **** * 2.2 **** * 2.0 **** * 1.7 ******** Relative 1.5 ******** Entropy 1.2 ******** (17.3 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ATTTCCCA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTCCCA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:129409373-129409393 2 6.24e-06 c atttccca gttccctttg chr19:4304559-4304579 4 6.24e-06 TAC ATTTCCCA GGCGGCCGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTCCCA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:129409373-129409393 6.2e-06 1_[+5]_11 chr19:4304559-4304579 6.2e-06 3_[+5]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTCCCA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATTTCCCA width=8 seqs=2 chr3:129409373-129409393 ( 2) ATTTCCCA 1 chr19:4304559-4304579 ( 4) ATTTCCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTCCCA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.6653 E= 2.0e+003 237 -765 -765 -765 -765 -765 -765 248 -765 -765 -765 248 -765 -765 -765 248 -765 169 -765 -765 -765 169 -765 -765 -765 169 -765 -765 237 -765 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTCCCA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.0e+003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTCCCA MEME-5 regular expression -------------------------------------------------------------------------------- ATTTCCCA -------------------------------------------------------------------------------- Time 6.79 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:154979457-154979477 7.52e-01 20 chr17:40559707-40559727 9.46e-01 20 chr19:55817022-55817042 5.04e-01 20 chr19:48907050-48907070 1.14e-01 20 chr19:49248645-49248665 8.54e-01 20 chr19:49148222-49148242 4.49e-01 20 chr19:49310053-49310073 9.54e-01 20 chr16:30908491-30908511 9.46e-01 20 chr19:49479623-49479643 3.59e-01 20 chr19:49416552-49416572 1.12e-01 20 chr9:131965201-131965221 9.99e-01 20 chr19:49224384-49224404 6.73e-01 20 chr19:49404510-49404530 7.06e-02 20 chr19:54682387-54682407 7.40e-01 20 chr19:49013959-49013979 7.54e-01 20 chr19:507916-507936 8.15e-01 20 chr11:60681342-60681362 3.63e-05 1_[+3(5.64e-05)]_[+2(3.09e-05)]_3 chr6:31866341-31866361 1.86e-04 2_[+3(1.38e-05)]_10 chr17:7118441-7118461 3.10e-01 20 chr19:42463572-42463592 4.10e-01 20 chr19:49362038-49362058 6.83e-01 20 chr19:48866462-48866482 1.59e-01 20 chr19:49228278-49228298 2.07e-01 20 chr11:46134711-46134731 1.63e-02 5_[+3(6.97e-05)]_7 chr6:10147373-10147393 8.17e-03 6_[+2(4.81e-05)]_6 chr1:224544463-224544483 8.62e-03 20 chr19:55709077-55709097 1.95e-02 20 chr6:43215052-43215072 9.20e-01 20 chr19:45908771-45908791 5.33e-01 20 chr7:150689977-150689997 8.19e-01 20 chr19:45988744-45988764 2.68e-02 20 chr3:14166407-14166427 6.26e-01 20 chr1:243418811-243418831 5.87e-03 20 chr17:7094972-7094992 3.83e-01 20 chr19:49250518-49250538 7.20e-04 20 chr16:58426756-58426776 9.87e-01 20 chr2:86332721-86332741 8.88e-01 20 chr10:111985617-11198563 9.82e-01 20 chr9:97021512-97021532 8.88e-01 20 chr19:44809220-44809240 4.62e-01 20 chr19:48833461-48833481 9.90e-01 20 chr8:82755049-82755069 4.86e-01 20 chr16:31045677-31045697 2.33e-01 20 chr2:38893018-38893038 4.08e-02 20 chr17:7358846-7358866 2.53e-01 20 chr12:133532909-13353292 1.92e-03 11_[+2(9.81e-05)]_1 chr16:68482619-68482639 1.15e-03 [+3(3.94e-05)]_12 chr19:55831309-55831329 8.08e-01 20 chr16:30103289-30103309 7.23e-01 20 chr1:2457689-2457709 9.60e-01 20 chr15:63481600-63481620 1.35e-05 1_[+2(1.37e-05)]_11 chr19:48922706-48922726 4.00e-01 20 chr19:52097776-52097796 8.79e-01 20 chr6:157801114-157801134 1.13e-01 20 chr19:38397773-38397793 3.95e-01 20 chr19:50651577-50651597 7.91e-01 20 chr12:54582873-54582893 3.43e-02 20 chr2:172543926-172543946 5.92e-01 20 chr5:178286914-178286934 6.08e-01 20 chr12:56710164-56710184 2.43e-03 9_[+4(5.45e-06)]_3 chr19:46027187-46027207 2.67e-01 20 chr6:43597120-43597140 1.10e-02 11_[+2(6.73e-06)]_1 chr19:49485731-49485751 1.66e-01 20 chr1:6673658-6673678 6.78e-01 20 chr16:46918165-46918185 8.75e-01 20 chr11:66138901-66138921 3.72e-01 20 chr17:19912596-19912616 9.99e-01 20 chr19:49486882-49486902 3.15e-03 1_[+1(8.79e-05)]_11 chr3:183735787-183735807 9.81e-01 20 chr4:104021026-104021046 1.42e-02 10_[+1(3.11e-05)]_2 chr17:76250689-76250709 9.90e-01 20 chr12:122985580-12298560 9.32e-01 20 chr2:27319287-27319307 3.65e-01 20 chr19:49422173-49422193 4.30e-01 20 chr16:70473232-70473252 3.18e-04 6_[+2(2.39e-05)]_6 chr8:144699790-144699810 1.90e-01 20 chr1:244816103-244816123 1.94e-02 [+3(2.00e-05)]_12 chr4:2538170-2538190 6.17e-01 20 chr20:62694403-62694423 8.98e-01 20 chr19:54618740-54618760 8.42e-01 20 chr2:170430445-170430465 7.88e-01 20 chr12:104323528-10432354 5.67e-01 20 chrX:106362069-106362089 2.67e-01 20 chr17:4634629-4634649 9.68e-01 20 chr10:74870189-74870209 7.98e-03 7_[+1(1.12e-05)]_5 chr5:178157741-178157761 3.05e-01 20 chr1:47799927-47799947 7.02e-01 20 chrX:47050112-47050132 1.01e-01 20 chr18:9913601-9913621 9.57e-01 20 chr4:18023827-18023847 1.13e-01 20 chr1:155113030-155113050 8.92e-01 20 chr12:13197293-13197313 9.98e-01 20 chr12:861550-861570 9.66e-01 20 chr10:92631682-92631702 9.08e-01 20 chr19:49017257-49017277 5.93e-01 20 chr13:52188861-52188881 4.56e-01 20 chr19:58838314-58838334 2.12e-01 20 chr1:23695391-23695411 9.99e-01 20 chr19:7616380-7616400 1.10e-01 20 chr10:104262646-10426266 9.17e-02 20 chr3:183892451-183892471 7.86e-01 20 chr5:85913663-85913683 6.43e-01 20 chr12:49449948-49449968 4.99e-03 5_[+1(3.11e-05)]_7 chr13:41838020-41838040 1.72e-01 20 chr2:232646340-232646360 4.67e-01 20 chr19:55690536-55690556 8.40e-01 20 chr2:73053206-73053226 2.44e-01 20 chr2:54950578-54950598 9.00e-01 20 chr17:73780735-73780755 3.55e-01 20 chr19:57946579-57946599 7.33e-01 20 chr1:1051588-1051608 9.91e-01 20 chr11:64456075-64456095 3.24e-03 10_[+2(6.73e-06)]_2 chr19:50163191-50163211 2.87e-01 20 chr11:134123354-13412337 4.92e-02 20 chr5:173043763-173043783 3.07e-03 11_[+2(6.73e-06)]_1 chr19:49385171-49385191 6.18e-01 20 chrX:48931707-48931727 9.43e-01 20 chr10:44144357-44144377 7.60e-01 20 chr6:5003938-5003958 8.55e-01 20 chr9:34377174-34377194 9.22e-01 20 chr8:124054139-124054159 3.76e-01 20 chr19:2457019-2457039 9.93e-01 20 chr20:33735202-33735222 8.55e-01 20 chr19:40315329-40315349 7.61e-01 20 chr19:4304559-4304579 9.60e-03 3_[+5(6.24e-06)]_9 chr14:65569319-65569339 1.05e-01 20 chr10:38383196-38383216 9.25e-01 20 chr1:247095541-247095561 9.75e-01 20 chr7:100888073-100888093 7.18e-01 20 chr15:64386193-64386213 3.80e-01 20 chr12:67662622-67662642 3.05e-01 20 chr7:75988645-75988665 8.77e-01 20 chr1:243419244-243419264 5.50e-02 20 chr3:46037347-46037367 7.29e-01 20 chr2:23598506-23598526 1.72e-02 8_[+3(3.94e-05)]_4 chr15:75182341-75182361 3.13e-01 20 chr10:43048375-43048395 9.35e-01 20 chr7:93633706-93633726 1.06e-02 20 chr19:55815834-55815854 8.67e-01 20 chr2:39005307-39005327 7.68e-01 20 chr19:3761712-3761732 1.44e-05 2_[+1(3.11e-05)]_1_[+3(7.55e-06)]_1 chr2:37193774-37193794 9.94e-01 20 chr20:47805054-47805074 7.82e-01 20 chr14:82000489-82000509 1.22e-02 20 chr1:151584420-151584440 9.80e-01 20 chr6:52929659-52929679 4.65e-01 20 chr21:35288174-35288194 9.35e-01 20 chr13:26827974-26827994 3.52e-01 20 chr19:55629117-55629137 5.25e-01 20 chr16:15150063-15150083 7.67e-02 20 chr19:44598450-44598470 1.44e-01 20 chr1:156052301-156052321 9.96e-01 20 chr3:4344972-4344992 9.94e-01 20 chr4:8160703-8160723 7.64e-01 20 chr1:45806155-45806175 3.68e-01 20 chr19:49469230-49469250 3.51e-02 20 chr7:106239381-106239401 7.65e-01 20 chr16:67840625-67840645 8.98e-01 20 chr6:42531623-42531643 2.13e-01 20 chr1:147142691-147142711 6.99e-01 20 chr12:110151349-11015136 4.99e-01 20 chr1:22110167-22110187 5.81e-01 20 chr7:150755110-150755130 6.34e-02 20 chr4:2420578-2420598 3.43e-01 20 chr11:16760092-16760112 5.07e-04 5_[+4(1.96e-06)]_7 chr13:52157993-52158013 6.76e-01 20 chr11:919227-919247 3.42e-01 20 chr16:53468315-53468335 4.76e-01 20 chr9:134955302-134955322 1.84e-02 10_[+1(8.12e-05)]_2 chr1:54519175-54519195 2.18e-01 20 chr17:38083903-38083923 2.14e-03 6_[+1(1.12e-05)]_6 chr1:205744636-205744656 9.70e-01 20 chr17:40950758-40950778 6.32e-01 20 chr5:131526049-131526069 7.54e-01 20 chr3:49466771-49466791 9.69e-01 20 chr12:1913816-1913836 6.15e-01 20 chr1:38412737-38412757 4.07e-01 20 chr10:38265621-38265641 6.54e-01 20 chr6:11093958-11093978 7.69e-01 20 chr16:30939351-30939371 3.06e-01 20 chr19:47354311-47354331 4.70e-01 20 chr2:242089772-242089792 6.18e-01 20 chr19:44507020-44507040 3.48e-01 20 chr17:40273398-40273418 7.54e-01 20 chr8:124253646-124253666 9.86e-01 20 chr16:30786759-30786779 1.31e-04 1_[+1(5.04e-05)]_1_[+3(2.65e-05)]_2 chr9:102861393-102861413 4.27e-04 3_[+2(3.09e-05)]_9 chr14:68286425-68286445 6.59e-01 20 chr19:49947107-49947127 7.30e-01 20 chr9:138853289-138853309 9.13e-01 20 chr19:49223949-49223969 1.21e-02 12_[+2(6.73e-06)] chr11:65488331-65488351 3.44e-01 20 chr19:1905291-1905311 7.43e-01 20 chr11:36615956-36615976 3.82e-02 20 chr2:44001133-44001153 9.14e-01 20 chr19:44617458-44617478 1.08e-02 11_[+1(1.12e-05)]_1 chr7:120590662-120590682 8.46e-01 20 chr22:20748360-20748380 4.71e-01 20 chr16:686398-686418 4.47e-01 20 chr19:10990002-10990022 1.06e-02 12_[+1(3.11e-05)] chr3:57741866-57741886 4.44e-01 20 chr3:32147924-32147944 6.50e-03 [+2(3.74e-05)]_12 chr17:17936937-17936957 7.43e-01 20 chr17:40075375-40075395 3.85e-02 10_[+1(3.11e-05)]_2 chr11:73662006-73662026 2.00e-01 20 chr1:155990757-155990777 4.87e-01 20 chr9:115819035-115819055 9.69e-01 20 chr3:50397091-50397111 9.63e-01 20 chr1:179846979-179846999 1.88e-01 20 chr16:4321914-4321934 4.59e-03 2_[+2(9.19e-05)]_10 chr16:30934686-30934706 3.74e-01 20 chr8:99129461-99129481 6.62e-03 6_[+3(1.38e-05)]_6 chr12:9102608-9102628 6.50e-01 20 chr2:172290726-172290746 4.29e-03 3_[+1(5.04e-05)]_9 chr19:48832926-48832946 9.12e-05 4_[+3(3.63e-06)]_8 chr5:55008192-55008212 4.18e-01 20 chr7:140098337-140098357 8.35e-01 20 chr1:115300193-115300213 8.01e-01 20 chr13:30881239-30881259 9.56e-01 20 chr9:104161018-104161038 8.57e-02 20 chr1:203240332-203240352 8.34e-01 20 chr21:15755558-15755578 6.23e-02 20 chr3:129409373-129409393 2.79e-03 1_[+5(6.24e-06)]_11 chr16:58270491-58270511 4.04e-01 20 chr11:64015012-64015032 4.13e-02 2_[+1(6.20e-05)]_10 chr3:69788478-69788498 1.79e-02 20 chr9:132346512-132346532 1.10e-02 20 chr14:59655254-59655274 3.35e-01 20 chr2:180872071-180872091 2.91e-01 20 chr22:41840508-41840528 6.61e-01 20 chr16:29687611-29687631 6.51e-01 20 chr5:157286179-157286199 3.52e-01 20 chr12:32832113-32832133 7.46e-02 20 chr14:102430729-10243074 1.33e-03 1_[+2(1.37e-05)]_11 chr22:39886351-39886371 2.89e-01 20 chr15:79165126-79165146 7.94e-01 20 chrX:106045806-106045826 8.09e-01 20 chr2:97202325-97202345 2.30e-04 1_[+2(1.76e-05)]_11 chr19:46366558-46366578 2.44e-03 11_[+1(1.12e-05)]_1 chr3:101443757-101443777 9.82e-01 20 chr9:7799827-7799847 8.77e-01 20 chr2:68694520-68694540 7.47e-01 20 chr19:36208447-36208467 9.81e-01 20 chr13:31736534-31736554 1.53e-04 1_[+1(3.11e-05)]_1_[+3(9.14e-05)]_2 chr19:10828090-10828110 7.83e-02 11_[+1(8.12e-05)]_1 chr18:71815703-71815723 5.01e-01 20 chr20:49084724-49084744 2.05e-01 20 chr7:111846547-111846567 1.32e-03 7_[+3(3.63e-06)]_5 chr8:145159818-145159838 1.00e+00 20 chr2:74753520-74753540 4.97e-02 11_[+1(3.11e-05)]_1 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n04.farnam.hpc.yale.internal ********************************************************************************