******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/SIN3A.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr10:70231463-70231483 1.0000 20 chr2:200775852-200775872 1.0000 20 chrX:53448898-53448918 1.0000 20 chr20:42295743-42295763 1.0000 20 chr14:106267694-10626771 1.0000 20 chr18:47901445-47901465 1.0000 20 chr6:167412512-167412532 1.0000 20 chr10:60027950-60027970 1.0000 20 chr21:33651295-33651315 1.0000 20 chrX:153140980-153141000 1.0000 20 chr6:86388769-86388789 1.0000 20 chr8:27695302-27695322 1.0000 20 chr11:58912262-58912282 1.0000 20 chr4:178231034-178231054 1.0000 20 chr15:68346398-68346418 1.0000 20 chr4:154265840-154265860 1.0000 20 chr21:34100736-34100756 1.0000 20 chr19:58874256-58874276 1.0000 20 chr10:129924690-12992471 1.0000 20 chr3:10502026-10502046 1.0000 20 chr3:20083128-20083148 1.0000 20 chrX:14891130-14891150 1.0000 20 chr2:97001582-97001602 1.0000 20 chr16:23690183-23690203 1.0000 20 chr17:27921332-27921352 1.0000 20 chr17:57233145-57233165 1.0000 20 chr8:101157998-101158018 1.0000 20 chr2:73612843-73612863 1.0000 20 chr1:68962740-68962760 1.0000 20 chrX:69509935-69509955 1.0000 20 chr15:40886476-40886496 1.0000 20 chr9:79009650-79009670 1.0000 20 chr16:46723600-46723620 1.0000 20 chr19:53073872-53073892 1.0000 20 chr19:11639469-11639489 1.0000 20 chr4:1723226-1723246 1.0000 20 chr19:10806615-10806635 1.0000 20 chr16:2510117-2510137 1.0000 20 chr7:36429473-36429493 1.0000 20 chr9:136001741-136001761 1.0000 20 chr22:51038712-51038732 1.0000 20 chr10:5454523-5454543 1.0000 20 chr17:6347759-6347779 1.0000 20 chr9:36572880-36572900 1.0000 20 chr16:4323049-4323069 1.0000 20 chr4:184427541-184427561 1.0000 20 chr4:8430259-8430279 1.0000 20 chr2:62081328-62081348 1.0000 20 chr17:58217333-58217353 1.0000 20 chr19:11492174-11492194 1.0000 20 chr12:69754066-69754086 1.0000 20 chr11:74204122-74204142 1.0000 20 chr4:83931839-83931859 1.0000 20 chr17:74137404-74137424 1.0000 20 chr6:80714386-80714406 1.0000 20 chr12:11653711-11653731 1.0000 20 chr6:153304174-153304194 1.0000 20 chr5:79950316-79950336 1.0000 20 chr1:45205518-45205538 1.0000 20 chr18:51884316-51884336 1.0000 20 chr14:105957686-10595770 1.0000 20 chr14:36004569-36004589 1.0000 20 chr3:48699278-48699298 1.0000 20 chr1:45476973-45476993 1.0000 20 chr3:52188410-52188430 1.0000 20 chr12:4648044-4648064 1.0000 20 chr11:61334836-61334856 1.0000 20 chr17:260132-260152 1.0000 20 chr2:234763178-234763198 1.0000 20 chr12:65220268-65220288 1.0000 20 chr6:126661273-126661293 1.0000 20 chr12:124246834-12424685 1.0000 20 chr1:28845146-28845166 1.0000 20 chr1:212209112-212209132 1.0000 20 chr5:10441991-10442011 1.0000 20 chr10:95256397-95256417 1.0000 20 chr3:27411011-27411031 1.0000 20 chr19:54024349-54024369 1.0000 20 chr8:145149749-145149769 1.0000 20 chr7:101933204-101933224 1.0000 20 chr15:40987419-40987439 1.0000 20 chr1:6305284-6305304 1.0000 20 chr22:36728967-36728987 1.0000 20 chr16:75590138-75590158 1.0000 20 chr6:83775659-83775679 1.0000 20 chr1:156542312-156542332 1.0000 20 chr22:19467451-19467471 1.0000 20 chr16:838702-838722 1.0000 20 chr1:160255027-160255047 1.0000 20 chr1:167189450-167189470 1.0000 20 chrX:70273201-70273221 1.0000 20 chr17:34257822-34257842 1.0000 20 chr6:33256977-33256997 1.0000 20 chr14:90421077-90421097 1.0000 20 chr17:42219316-42219336 1.0000 20 chr1:226496901-226496921 1.0000 20 chr19:14247393-14247413 1.0000 20 chr16:67219414-67219434 1.0000 20 chr7:102715221-102715241 1.0000 20 chr19:36545811-36545831 1.0000 20 chr9:137299312-137299332 1.0000 20 chr16:58283824-58283844 1.0000 20 chr3:160117476-160117496 1.0000 20 chr20:25388336-25388356 1.0000 20 chr17:37558978-37558998 1.0000 20 chr16:30773380-30773400 1.0000 20 chr8:63951313-63951333 1.0000 20 chr4:83934032-83934052 1.0000 20 chr20:271386-271406 1.0000 20 chr17:8113905-8113925 1.0000 20 chr17:73937239-73937259 1.0000 20 chr6:27862257-27862277 1.0000 20 chr5:137667491-137667511 1.0000 20 chr4:15683201-15683221 1.0000 20 chr11:66057135-66057155 1.0000 20 chr2:10262830-10262850 1.0000 20 chr1:26735195-26735215 1.0000 20 chr2:17935418-17935438 1.0000 20 chr22:22523068-22523088 1.0000 20 chr19:14529144-14529164 1.0000 20 chr11:28129672-28129692 1.0000 20 chr1:202779927-202779947 1.0000 20 chr15:59397341-59397361 1.0000 20 chr1:93646302-93646322 1.0000 20 chr16:30107538-30107558 1.0000 20 chr16:20817799-20817819 1.0000 20 chr18:2571569-2571589 1.0000 20 chr1:176176514-176176534 1.0000 20 chr1:156251171-156251191 1.0000 20 chr1:114301803-114301823 1.0000 20 chr1:197115780-197115800 1.0000 20 chr13:31040241-31040261 1.0000 20 chr19:50490586-50490606 1.0000 20 chr4:120987943-120987963 1.0000 20 chr16:53469498-53469518 1.0000 20 chr15:90118701-90118721 1.0000 20 chr7:44646031-44646051 1.0000 20 chr4:83932118-83932138 1.0000 20 chr7:100136401-100136421 1.0000 20 chr16:46655242-46655262 1.0000 20 chr8:95487285-95487305 1.0000 20 chr19:12943388-12943408 1.0000 20 chr1:26185912-26185932 1.0000 20 chr4:186125394-186125414 1.0000 20 chr4:174255892-174255912 1.0000 20 chr1:23857736-23857756 1.0000 20 chr9:131842937-131842957 1.0000 20 chr11:118795668-11879568 1.0000 20 chr19:10426668-10426688 1.0000 20 chr22:50709360-50709380 1.0000 20 chr3:158519845-158519865 1.0000 20 chr5:176264807-176264827 1.0000 20 chr14:76452069-76452089 1.0000 20 chr12:109535741-10953576 1.0000 20 chr8:124553506-124553526 1.0000 20 chr19:13842500-13842520 1.0000 20 chr6:33291308-33291328 1.0000 20 chr10:62538218-62538238 1.0000 20 chrX:48555202-48555222 1.0000 20 chr12:101673939-10167395 1.0000 20 chr16:23464563-23464583 1.0000 20 chr3:108308246-108308266 1.0000 20 chrX:129473771-129473791 1.0000 20 chr10:94353085-94353105 1.0000 20 chr9:3525862-3525882 1.0000 20 chr1:156265465-156265485 1.0000 20 chr8:95961581-95961601 1.0000 20 chr10:124671588-12467160 1.0000 20 chr10:94352884-94352904 1.0000 20 chr2:55846004-55846024 1.0000 20 chr17:76210382-76210402 1.0000 20 chr9:135753701-135753721 1.0000 20 chr5:68485434-68485454 1.0000 20 chr15:41624740-41624760 1.0000 20 chr10:102820440-10282046 1.0000 20 chr16:3018976-3018996 1.0000 20 chr17:29159002-29159022 1.0000 20 chr11:19262603-19262623 1.0000 20 chr7:89874480-89874500 1.0000 20 chr14:102771440-10277146 1.0000 20 chr1:159147254-159147274 1.0000 20 chr7:64734320-64734340 1.0000 20 chr2:112641687-112641707 1.0000 20 chr17:17208915-17208935 1.0000 20 chr3:49893951-49893971 1.0000 20 chr15:91498529-91498549 1.0000 20 chr7:154861846-154861866 1.0000 20 chr12:2861978-2861998 1.0000 20 chr15:91260643-91260663 1.0000 20 chr1:44457260-44457280 1.0000 20 chr11:797427-797447 1.0000 20 chr9:135457606-135457626 1.0000 20 chr10:134145646-13414566 1.0000 20 chr3:48229887-48229907 1.0000 20 chr10:124639294-12463931 1.0000 20 chr15:89787273-89787293 1.0000 20 chr7:152373168-152373188 1.0000 20 chr3:121264806-121264826 1.0000 20 chr17:1933742-1933762 1.0000 20 chr15:56757460-56757480 1.0000 20 chr8:145743205-145743225 1.0000 20 chr12:105724241-10572426 1.0000 20 chr22:46692772-46692792 1.0000 20 chr4:113558004-113558024 1.0000 20 chr5:175815602-175815622 1.0000 20 chr1:181455068-181455088 1.0000 20 chr11:47199021-47199041 1.0000 20 chr17:21002783-21002803 1.0000 20 chr20:30556381-30556401 1.0000 20 chr3:183967341-183967361 1.0000 20 chr3:13462669-13462689 1.0000 20 chr1:211849013-211849033 1.0000 20 chr1:242011516-242011536 1.0000 20 chr5:169010776-169010796 1.0000 20 chr2:173421320-173421340 1.0000 20 chr20:1373947-1373967 1.0000 20 chr9:106856600-106856620 1.0000 20 chr9:126872768-126872788 1.0000 20 chr3:167098117-167098137 1.0000 20 chr20:54967268-54967288 1.0000 20 chr4:122745034-122745054 1.0000 20 chr2:32853213-32853233 1.0000 20 chr14:81408085-81408105 1.0000 20 chr19:4769697-4769717 1.0000 20 chr2:25565442-25565462 1.0000 20 chr22:43253103-43253123 1.0000 20 chr7:129588788-129588808 1.0000 20 chr13:21750661-21750681 1.0000 20 chr6:159420776-159420796 1.0000 20 chr15:36871480-36871500 1.0000 20 chr17:42786049-42786069 1.0000 20 chr5:1295117-1295137 1.0000 20 chr3:45637963-45637983 1.0000 20 chr2:74758066-74758086 1.0000 20 chr17:1419914-1419934 1.0000 20 chr12:110151454-11015147 1.0000 20 chr6:26251097-26251117 1.0000 20 chr2:111435614-111435634 1.0000 20 chr19:45682121-45682141 1.0000 20 chr5:176737997-176738017 1.0000 20 chr20:37555057-37555077 1.0000 20 chr19:46195405-46195425 1.0000 20 chr15:74988447-74988467 1.0000 20 chr3:20227666-20227686 1.0000 20 chr11:74303609-74303629 1.0000 20 chr12:49717063-49717083 1.0000 20 chr19:50169247-50169267 1.0000 20 chr13:25496917-25496937 1.0000 20 chr20:39657103-39657123 1.0000 20 chr10:99161001-99161021 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_SIN3A/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/SIN3A.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.183 C 0.323 G 0.313 T 0.181 Background letter frequencies (from file dataset with add-one prior applied): A 0.183 C 0.323 G 0.313 T 0.181 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TTYAAAHY MEME-1 width = 8 sites = 13 llr = 115 E-value = 1.4e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTYAAAHY MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::28aa4: pos.-specific C 2:5:::34 probability G ::22:::: matrix T 8a2:::36 bits 2.5 * ** 2.2 * ** 2.0 * ** 1.7 ** *** Relative 1.5 ** *** Entropy 1.2 ** *** * (12.7 bits) 1.0 ** *** * 0.7 ** ***** 0.5 ** ***** 0.2 ** ***** 0.0 -------- Multilevel TTCAAAAT consensus T CC sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYAAAHY MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:109535741-10953576 10 2.15e-06 CTCCACGTG TTCAAAAT AGC chr4:83934032-83934052 12 2.15e-06 CCAGGGTTTG TTCAAAAT C chr4:174255892-174255912 3 7.88e-06 AT TTAAAAAT ACTTAGTCGG chr6:83775659-83775679 12 2.09e-05 GGCGCGCATT TTCAAAAC C chr22:46692772-46692792 11 3.32e-05 CGGCGCCGCG TTTAAATC CG chr11:74204122-74204142 1 3.54e-05 . TTAAAAAC TCAAACGCAG chr19:46195405-46195425 12 4.79e-05 GGCAGTCTGA TTCAAACC G chr15:91498529-91498549 7 4.79e-05 GCGCCC TTCAAACC TTTTCT chr10:62538218-62538238 6 4.79e-05 TGAGT TTGAAACT GCTCGCA chr12:110151454-11015147 6 8.41e-05 CGGCC TTTGAATT TTGCCGC chr18:47901445-47901465 5 8.41e-05 GCGG TTTGAATT TTGCTTAC chr15:36871480-36871500 9 1.15e-04 GAGGAGCG CTCAAACT GGCG chrX:53448898-53448918 12 1.74e-04 AGCGCTGGGT CTGAAATT C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYAAAHY MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:109535741-10953576 2.1e-06 9_[+1]_3 chr4:83934032-83934052 2.1e-06 11_[+1]_1 chr4:174255892-174255912 7.9e-06 2_[+1]_10 chr6:83775659-83775679 2.1e-05 11_[+1]_1 chr22:46692772-46692792 3.3e-05 10_[+1]_2 chr11:74204122-74204142 3.5e-05 [+1]_12 chr19:46195405-46195425 4.8e-05 11_[+1]_1 chr15:91498529-91498549 4.8e-05 6_[+1]_6 chr10:62538218-62538238 4.8e-05 5_[+1]_7 chr12:110151454-11015147 8.4e-05 5_[+1]_7 chr18:47901445-47901465 8.4e-05 4_[+1]_8 chr15:36871480-36871500 0.00011 8_[+1]_4 chrX:53448898-53448918 0.00017 11_[+1]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYAAAHY MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTYAAAHY width=8 seqs=13 chr12:109535741-10953576 ( 10) TTCAAAAT 1 chr4:83934032-83934052 ( 12) TTCAAAAT 1 chr4:174255892-174255912 ( 3) TTAAAAAT 1 chr6:83775659-83775679 ( 12) TTCAAAAC 1 chr22:46692772-46692792 ( 11) TTTAAATC 1 chr11:74204122-74204142 ( 1) TTAAAAAC 1 chr19:46195405-46195425 ( 12) TTCAAACC 1 chr15:91498529-91498549 ( 7) TTCAAACC 1 chr10:62538218-62538238 ( 6) TTGAAACT 1 chr12:110151454-11015147 ( 6) TTTGAATT 1 chr18:47901445-47901465 ( 5) TTTGAATT 1 chr15:36871480-36871500 ( 9) CTCAAACT 1 chrX:53448898-53448918 ( 12) CTGAAATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYAAAHY MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.4923 E= 1.4e-002 -1035 -107 -1035 223 -1035 -1035 -1035 247 -25 51 -103 35 221 -1035 -103 -1035 245 -1035 -1035 -1035 245 -1035 -1035 -1035 107 -7 -1035 77 -1035 25 -1035 177 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYAAAHY MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 1.4e-002 0.000000 0.153846 0.000000 0.846154 0.000000 0.000000 0.000000 1.000000 0.153846 0.461538 0.153846 0.230769 0.846154 0.000000 0.153846 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.384615 0.307692 0.000000 0.307692 0.000000 0.384615 0.000000 0.615385 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYAAAHY MEME-1 regular expression -------------------------------------------------------------------------------- TT[CT]AAA[ACT][TC] -------------------------------------------------------------------------------- Time 2.14 secs. ******************************************************************************** ******************************************************************************** MOTIF TTHTWTTT MEME-2 width = 8 sites = 8 llr = 76 E-value = 2.1e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTHTWTTT MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::3:4::: pos.-specific C 334::1:: probability G ::::1::: matrix T 884a59aa bits 2.5 * ** 2.2 * ** 2.0 * ** 1.7 * *** Relative 1.5 ** * *** Entropy 1.2 ** * *** (13.7 bits) 1.0 ** ***** 0.7 ** ***** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTCTTTTT consensus CCT A sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTHTWTTT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:23857736-23857756 9 1.15e-06 ttcttctt tttttttt tttt chr9:79009650-79009670 4 1.15e-06 GGT TTTTTTTT CTCCTTCCT chr20:54967268-54967288 12 5.54e-06 TCAAAGGTTC TTCTTTTT A chrX:129473771-129473791 1 1.91e-05 . TCTTATTT CGCGCCTTTG chr6:26251097-26251117 13 3.26e-05 TTGTTTGGGA TTATGTTT chr6:27862257-27862277 12 4.98e-05 TTGGTCAACG CTCTATTT G chr16:20817799-20817819 3 6.71e-05 AC TTCTACTT CCGGTCCGTT chr1:160255027-160255047 11 8.16e-05 TGCGGAACCG CCATTTTT AA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTHTWTTT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:23857736-23857756 1.2e-06 8_[+2]_4 chr9:79009650-79009670 1.2e-06 3_[+2]_9 chr20:54967268-54967288 5.5e-06 11_[+2]_1 chrX:129473771-129473791 1.9e-05 [+2]_12 chr6:26251097-26251117 3.3e-05 12_[+2] chr6:27862257-27862277 5e-05 11_[+2]_1 chr16:20817799-20817819 6.7e-05 2_[+2]_10 chr1:160255027-160255047 8.2e-05 10_[+2]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTHTWTTT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTHTWTTT width=8 seqs=8 chr1:23857736-23857756 ( 9) TTTTTTTT 1 chr9:79009650-79009670 ( 4) TTTTTTTT 1 chr20:54967268-54967288 ( 12) TTCTTTTT 1 chrX:129473771-129473791 ( 1) TCTTATTT 1 chr6:26251097-26251117 ( 13) TTATGTTT 1 chr6:27862257-27862277 ( 12) CTCTATTT 1 chr16:20817799-20817819 ( 3) TTCTACTT 1 chr1:160255027-160255047 ( 11) CCATTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTHTWTTT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.98673 E= 2.1e+002 -965 -37 -965 205 -965 -37 -965 205 45 21 -965 105 -965 -965 -965 247 104 -965 -132 147 -965 -137 -965 227 -965 -965 -965 247 -965 -965 -965 247 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTHTWTTT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 2.1e+002 0.000000 0.250000 0.000000 0.750000 0.000000 0.250000 0.000000 0.750000 0.250000 0.375000 0.000000 0.375000 0.000000 0.000000 0.000000 1.000000 0.375000 0.000000 0.125000 0.500000 0.000000 0.125000 0.000000 0.875000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTHTWTTT MEME-2 regular expression -------------------------------------------------------------------------------- [TC][TC][CTA]T[TA]TTT -------------------------------------------------------------------------------- Time 3.26 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGCACYA MEME-3 width = 8 sites = 14 llr = 113 E-value = 1.8e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGCACYA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :a::9::8 pos.-specific C 9::7:96: probability G 1:a3:1:1 matrix T ::::1:41 bits 2.5 * 2.2 * 2.0 * * 1.7 ** * Relative 1.5 ** * * Entropy 1.2 *** * * (11.7 bits) 1.0 *** **** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CAGCACCA consensus G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCACYA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:159420776-159420796 4 3.26e-05 TCC CAGCACCA CAGAGACCA chr7:154861846-154861866 8 3.26e-05 CCGCGGA CAGCACCA CATGT chr19:12943388-12943408 6 3.26e-05 GAGAC CAGCACCA AGGAGAG chr16:3018976-3018996 1 6.41e-05 . CAGGACTA TGCCCCCGAG chr9:3525862-3525882 6 6.41e-05 GTCGC CAGGACTA CGGTGAC chr22:50709360-50709380 6 6.41e-05 ACTGT CAGGACCA GGGACAG chr16:67219414-67219434 4 6.41e-05 CTT CAGGACCA AGGCCAAGG chr13:25496917-25496937 5 9.57e-05 AGCT CAGCAGCA CGAACCGA chr12:49717063-49717083 2 9.57e-05 C CAGCAGCA CCCGAGAGGG chr19:4769697-4769717 3 1.51e-04 TT CAGCACCG GGGCTCAGGA chr1:156251171-156251191 4 1.51e-04 AGG CAGCACTG ACACTCGGC chr4:120987943-120987963 10 1.84e-04 CGGCTCCAA CAGCACTT CCC chrX:70273201-70273221 4 2.16e-04 TGA CAGCTCCA GGGGCGCGG chr7:64734320-64734340 13 2.47e-04 TGCCCCTCGG GAGCACTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCACYA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:159420776-159420796 3.3e-05 3_[+3]_9 chr7:154861846-154861866 3.3e-05 7_[+3]_5 chr19:12943388-12943408 3.3e-05 5_[+3]_7 chr16:3018976-3018996 6.4e-05 [+3]_12 chr9:3525862-3525882 6.4e-05 5_[+3]_7 chr22:50709360-50709380 6.4e-05 5_[+3]_7 chr16:67219414-67219434 6.4e-05 3_[+3]_9 chr13:25496917-25496937 9.6e-05 4_[+3]_8 chr12:49717063-49717083 9.6e-05 1_[+3]_11 chr19:4769697-4769717 0.00015 2_[+3]_10 chr1:156251171-156251191 0.00015 3_[+3]_9 chr4:120987943-120987963 0.00018 9_[+3]_3 chrX:70273201-70273221 0.00022 3_[+3]_9 chr7:64734320-64734340 0.00025 12_[+3] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCACYA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGCACYA width=8 seqs=14 chr6:159420776-159420796 ( 4) CAGCACCA 1 chr7:154861846-154861866 ( 8) CAGCACCA 1 chr19:12943388-12943408 ( 6) CAGCACCA 1 chr16:3018976-3018996 ( 1) CAGGACTA 1 chr9:3525862-3525882 ( 6) CAGGACTA 1 chr22:50709360-50709380 ( 6) CAGGACCA 1 chr16:67219414-67219434 ( 4) CAGGACCA 1 chr13:25496917-25496937 ( 5) CAGCAGCA 1 chr12:49717063-49717083 ( 2) CAGCAGCA 1 chr19:4769697-4769717 ( 3) CAGCACCG 1 chr1:156251171-156251191 ( 4) CAGCACTG 1 chr4:120987943-120987963 ( 10) CAGCACTT 1 chrX:70273201-70273221 ( 4) CAGCTCCA 1 chr7:64734320-64734340 ( 13) GAGCACTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCACYA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.69581 E= 1.8e+002 -1045 152 -213 -1045 245 -1045 -1045 -1045 -1045 -1045 167 -1045 -1045 114 -13 -1045 235 -1045 -1045 -134 -1045 141 -113 -1045 -1045 99 -1045 98 210 -1045 -113 -134 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCACYA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 1.8e+002 0.000000 0.928571 0.071429 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.714286 0.285714 0.000000 0.928571 0.000000 0.000000 0.071429 0.000000 0.857143 0.142857 0.000000 0.000000 0.642857 0.000000 0.357143 0.785714 0.000000 0.142857 0.071429 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCACYA MEME-3 regular expression -------------------------------------------------------------------------------- CAG[CG]AC[CT]A -------------------------------------------------------------------------------- Time 6.61 secs. ******************************************************************************** ******************************************************************************** MOTIF ARATTKMA MEME-4 width = 8 sites = 5 llr = 52 E-value = 4.9e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif ARATTKMA MEME-4 Description -------------------------------------------------------------------------------- Simplified A a6a:::68 pos.-specific C ::::::4: probability G :4:::6:: matrix T :::aa4:2 bits 2.5 * *** 2.2 * *** 2.0 * *** 1.7 * *** * Relative 1.5 * *** * Entropy 1.2 ***** ** (14.9 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AAATTGAA consensus G TCT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARATTKMA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr15:74988447-74988467 2 1.22e-06 G AAATTTAA GAGGTTGGAA chr2:10262830-10262850 3 7.55e-06 GG AGATTTAA AGGCTGCTGG chr4:113558004-113558024 8 1.49e-05 ACCTGTC AAATTGCA CAAAA chr16:2510117-2510137 2 1.49e-05 C AAATTGCA AGGAGACGCC chr17:42786049-42786069 13 3.96e-05 AAACGCCAAG AGATTGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARATTKMA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:74988447-74988467 1.2e-06 1_[+4]_11 chr2:10262830-10262850 7.6e-06 2_[+4]_10 chr4:113558004-113558024 1.5e-05 7_[+4]_5 chr16:2510117-2510137 1.5e-05 1_[+4]_11 chr17:42786049-42786069 4e-05 12_[+4] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARATTKMA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ARATTKMA width=8 seqs=5 chr15:74988447-74988467 ( 2) AAATTTAA 1 chr2:10262830-10262850 ( 3) AGATTTAA 1 chr4:113558004-113558024 ( 8) AAATTGCA 1 chr16:2510117-2510137 ( 2) AAATTGCA 1 chr17:42786049-42786069 ( 13) AGATTGAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARATTKMA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.2866 E= 4.9e+002 245 -897 -897 -897 171 -897 35 -897 245 -897 -897 -897 -897 -897 -897 247 -897 -897 -897 247 -897 -897 94 115 171 31 -897 -897 213 -897 -897 15 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARATTKMA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 4.9e+002 1.000000 0.000000 0.000000 0.000000 0.600000 0.000000 0.400000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.600000 0.400000 0.600000 0.400000 0.000000 0.000000 0.800000 0.000000 0.000000 0.200000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARATTKMA MEME-4 regular expression -------------------------------------------------------------------------------- A[AG]ATT[GT][AC][AT] -------------------------------------------------------------------------------- Time 9.81 secs. ******************************************************************************** ******************************************************************************** MOTIF TRGTTTCT MEME-5 width = 8 sites = 2 llr = 23 E-value = 2.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TRGTTTCT MEME-5 Description -------------------------------------------------------------------------------- Simplified A :5:::::: pos.-specific C ::::::a: probability G :5a::::: matrix T a::aaa:a bits 2.5 * *** * 2.2 * *** * 2.0 * *** * 1.7 * ****** Relative 1.5 * ****** Entropy 1.2 * ****** (16.7 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TAGTTTCT consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRGTTTCT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr10:94352884-94352904 2 3.59e-06 T TAGTTTCT GGGGATTCGG chr19:54024349-54024369 4 9.74e-06 AAA TGGTTTCT CCTGGATCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRGTTTCT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:94352884-94352904 3.6e-06 1_[+5]_11 chr19:54024349-54024369 9.7e-06 3_[+5]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRGTTTCT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TRGTTTCT width=8 seqs=2 chr10:94352884-94352904 ( 2) TAGTTTCT 1 chr19:54024349-54024369 ( 4) TGGTTTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRGTTTCT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.6653 E= 2.3e+003 -765 -765 -765 246 145 -765 67 -765 -765 -765 167 -765 -765 -765 -765 246 -765 -765 -765 246 -765 -765 -765 246 -765 162 -765 -765 -765 -765 -765 246 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRGTTTCT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.3e+003 0.000000 0.000000 0.000000 1.000000 0.500000 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRGTTTCT MEME-5 regular expression -------------------------------------------------------------------------------- T[AG]GTTTCT -------------------------------------------------------------------------------- Time 12.90 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:70231463-70231483 9.89e-01 20 chr2:200775852-200775872 2.55e-02 20 chrX:53448898-53448918 2.55e-02 20 chr20:42295743-42295763 2.73e-01 20 chr14:106267694-10626771 3.64e-01 20 chr18:47901445-47901465 8.19e-05 4_[+1(8.41e-05)]_8 chr6:167412512-167412532 6.61e-01 20 chr10:60027950-60027970 6.25e-01 20 chr21:33651295-33651315 5.60e-01 20 chrX:153140980-153141000 9.97e-01 20 chr6:86388769-86388789 9.70e-01 20 chr8:27695302-27695322 1.20e-02 20 chr11:58912262-58912282 2.40e-01 20 chr4:178231034-178231054 1.19e-01 20 chr15:68346398-68346418 8.39e-01 20 chr4:154265840-154265860 9.98e-01 20 chr21:34100736-34100756 8.81e-01 20 chr19:58874256-58874276 6.47e-01 20 chr10:129924690-12992471 1.00e+00 20 chr3:10502026-10502046 3.85e-01 20 chr3:20083128-20083148 2.43e-01 20 chrX:14891130-14891150 5.52e-01 20 chr2:97001582-97001602 9.46e-01 20 chr16:23690183-23690203 5.25e-01 20 chr17:27921332-27921352 1.70e-02 20 chr17:57233145-57233165 2.11e-01 20 chr8:101157998-101158018 4.20e-01 20 chr2:73612843-73612863 5.42e-01 20 chr1:68962740-68962760 7.78e-01 20 chrX:69509935-69509955 4.70e-01 20 chr15:40886476-40886496 5.39e-01 20 chr9:79009650-79009670 1.03e-04 2_[+2(1.15e-06)]_10 chr16:46723600-46723620 3.39e-01 20 chr19:53073872-53073892 5.24e-01 20 chr19:11639469-11639489 5.89e-01 20 chr4:1723226-1723246 1.00e+00 20 chr19:10806615-10806635 9.96e-01 20 chr16:2510117-2510137 3.57e-02 1_[+4(1.49e-05)]_11 chr7:36429473-36429493 3.55e-01 20 chr9:136001741-136001761 6.64e-01 20 chr22:51038712-51038732 9.95e-01 20 chr10:5454523-5454543 9.99e-01 20 chr17:6347759-6347779 4.41e-01 20 chr9:36572880-36572900 9.81e-01 20 chr16:4323049-4323069 1.25e-01 20 chr4:184427541-184427561 3.38e-01 20 chr4:8430259-8430279 4.15e-02 20 chr2:62081328-62081348 2.61e-01 20 chr17:58217333-58217353 7.95e-01 20 chr19:11492174-11492194 4.88e-01 20 chr12:69754066-69754086 9.81e-01 20 chr11:74204122-74204142 3.86e-03 [+1(3.54e-05)]_12 chr4:83931839-83931859 2.76e-01 20 chr17:74137404-74137424 2.06e-01 20 chr6:80714386-80714406 1.96e-02 20 chr12:11653711-11653731 9.97e-01 20 chr6:153304174-153304194 2.99e-01 20 chr5:79950316-79950336 3.63e-01 20 chr1:45205518-45205538 7.39e-01 20 chr18:51884316-51884336 5.41e-01 20 chr14:105957686-10595770 5.47e-01 20 chr14:36004569-36004589 3.71e-01 20 chr3:48699278-48699298 1.15e-01 20 chr1:45476973-45476993 9.07e-01 20 chr3:52188410-52188430 5.13e-01 20 chr12:4648044-4648064 6.02e-01 20 chr11:61334836-61334856 1.38e-01 20 chr17:260132-260152 9.84e-01 20 chr2:234763178-234763198 8.52e-01 20 chr12:65220268-65220288 4.49e-01 20 chr6:126661273-126661293 1.93e-01 20 chr12:124246834-12424685 9.98e-01 20 chr1:28845146-28845166 1.00e+00 20 chr1:212209112-212209132 4.52e-01 20 chr5:10441991-10442011 5.94e-01 20 chr10:95256397-95256417 8.30e-01 20 chr3:27411011-27411031 9.92e-01 20 chr19:54024349-54024369 2.74e-04 3_[+5(9.74e-06)]_9 chr8:145149749-145149769 9.08e-01 20 chr7:101933204-101933224 4.00e-01 20 chr15:40987419-40987439 7.86e-01 20 chr1:6305284-6305304 5.32e-01 20 chr22:36728967-36728987 7.95e-01 20 chr16:75590138-75590158 6.12e-03 20 chr6:83775659-83775679 6.26e-04 11_[+1(2.09e-05)]_1 chr1:156542312-156542332 9.53e-02 20 chr22:19467451-19467471 8.01e-01 20 chr16:838702-838722 6.11e-01 20 chr1:160255027-160255047 1.75e-03 10_[+2(8.16e-05)]_2 chr1:167189450-167189470 9.71e-01 20 chrX:70273201-70273221 1.69e-01 20 chr17:34257822-34257842 9.78e-01 20 chr6:33256977-33256997 1.67e-01 20 chr14:90421077-90421097 9.90e-01 20 chr17:42219316-42219336 9.95e-01 20 chr1:226496901-226496921 6.61e-01 20 chr19:14247393-14247413 6.14e-01 20 chr16:67219414-67219434 4.62e-02 3_[+3(6.41e-05)]_9 chr7:102715221-102715241 8.81e-01 20 chr19:36545811-36545831 9.98e-01 20 chr9:137299312-137299332 2.38e-01 20 chr16:58283824-58283844 9.88e-01 20 chr3:160117476-160117496 3.07e-01 20 chr20:25388336-25388356 9.78e-01 20 chr17:37558978-37558998 5.25e-02 20 chr16:30773380-30773400 7.02e-01 20 chr8:63951313-63951333 7.51e-01 20 chr4:83934032-83934052 1.23e-04 11_[+1(2.15e-06)]_1 chr20:271386-271406 8.27e-01 20 chr17:8113905-8113925 9.93e-01 20 chr17:73937239-73937259 7.39e-01 20 chr6:27862257-27862277 1.95e-02 11_[+2(4.98e-05)]_1 chr5:137667491-137667511 6.04e-01 20 chr4:15683201-15683221 9.80e-01 20 chr11:66057135-66057155 5.00e-01 20 chr2:10262830-10262850 2.04e-03 2_[+4(7.55e-06)]_10 chr1:26735195-26735215 2.96e-01 20 chr2:17935418-17935438 6.16e-01 20 chr22:22523068-22523088 5.48e-01 20 chr19:14529144-14529164 3.77e-01 20 chr11:28129672-28129692 6.29e-01 20 chr1:202779927-202779947 9.47e-01 20 chr15:59397341-59397361 2.87e-01 20 chr1:93646302-93646322 4.00e-01 20 chr16:30107538-30107558 1.83e-01 20 chr16:20817799-20817819 3.20e-03 2_[+2(6.71e-05)]_10 chr18:2571569-2571589 9.99e-01 20 chr1:176176514-176176534 5.68e-01 20 chr1:156251171-156251191 3.05e-02 20 chr1:114301803-114301823 1.92e-01 20 chr1:197115780-197115800 6.69e-02 20 chr13:31040241-31040261 9.76e-01 20 chr19:50490586-50490606 1.33e-01 20 chr4:120987943-120987963 5.82e-02 20 chr16:53469498-53469518 7.21e-01 20 chr15:90118701-90118721 7.89e-01 20 chr7:44646031-44646051 3.29e-01 20 chr4:83932118-83932138 7.24e-01 20 chr7:100136401-100136421 3.40e-01 20 chr16:46655242-46655262 9.99e-01 20 chr8:95487285-95487305 9.99e-01 20 chr19:12943388-12943408 7.21e-02 5_[+3(3.26e-05)]_7 chr1:26185912-26185932 1.00e+00 20 chr4:186125394-186125414 9.81e-01 20 chr4:174255892-174255912 3.33e-04 2_[+1(7.88e-06)]_10 chr1:23857736-23857756 9.64e-04 6_[+2(1.15e-06)]_6 chr9:131842937-131842957 9.75e-01 20 chr11:118795668-11879568 8.56e-02 20 chr19:10426668-10426688 5.92e-01 20 chr22:50709360-50709380 1.09e-01 5_[+3(6.41e-05)]_7 chr3:158519845-158519865 9.09e-01 20 chr5:176264807-176264827 6.03e-01 20 chr14:76452069-76452089 9.42e-01 20 chr12:109535741-10953576 1.92e-03 9_[+1(2.15e-06)]_3 chr8:124553506-124553526 7.54e-01 20 chr19:13842500-13842520 9.22e-01 20 chr6:33291308-33291328 5.87e-01 20 chr10:62538218-62538238 5.89e-04 5_[+1(4.79e-05)]_7 chrX:48555202-48555222 9.58e-01 20 chr12:101673939-10167395 7.92e-01 20 chr16:23464563-23464583 8.73e-01 20 chr3:108308246-108308266 6.79e-01 20 chrX:129473771-129473791 2.66e-03 [+2(1.91e-05)]_12 chr10:94353085-94353105 4.54e-01 20 chr9:3525862-3525882 8.27e-02 5_[+3(6.41e-05)]_7 chr1:156265465-156265485 7.48e-01 20 chr8:95961581-95961601 1.34e-01 20 chr10:124671588-12467160 4.03e-01 20 chr10:94352884-94352904 6.14e-04 1_[+5(3.59e-06)]_11 chr2:55846004-55846024 1.68e-01 20 chr17:76210382-76210402 9.94e-01 20 chr9:135753701-135753721 6.90e-01 20 chr5:68485434-68485454 7.04e-01 20 chr15:41624740-41624760 8.79e-01 20 chr10:102820440-10282046 7.17e-02 20 chr16:3018976-3018996 6.02e-02 [+3(6.41e-05)]_12 chr17:29159002-29159022 8.88e-02 20 chr11:19262603-19262623 8.90e-01 20 chr7:89874480-89874500 5.49e-01 20 chr14:102771440-10277146 2.51e-01 20 chr1:159147254-159147274 3.54e-01 20 chr7:64734320-64734340 1.86e-01 20 chr2:112641687-112641707 5.26e-01 20 chr17:17208915-17208935 9.44e-01 20 chr3:49893951-49893971 1.75e-01 20 chr15:91498529-91498549 6.59e-04 6_[+1(4.79e-05)]_6 chr7:154861846-154861866 3.27e-02 7_[+3(3.26e-05)]_5 chr12:2861978-2861998 9.88e-01 20 chr15:91260643-91260663 6.67e-01 20 chr1:44457260-44457280 9.70e-01 20 chr11:797427-797447 6.80e-01 20 chr9:135457606-135457626 3.17e-01 20 chr10:134145646-13414566 5.39e-01 20 chr3:48229887-48229907 7.36e-01 20 chr10:124639294-12463931 1.29e-01 20 chr15:89787273-89787293 3.67e-01 20 chr7:152373168-152373188 9.80e-01 20 chr3:121264806-121264826 8.74e-01 20 chr17:1933742-1933762 3.64e-01 20 chr15:56757460-56757480 5.69e-01 20 chr8:145743205-145743225 7.91e-01 20 chr12:105724241-10572426 9.50e-01 20 chr22:46692772-46692792 5.98e-03 10_[+1(3.32e-05)]_2 chr4:113558004-113558024 4.56e-04 7_[+4(1.49e-05)]_5 chr5:175815602-175815622 3.83e-01 20 chr1:181455068-181455088 1.14e-01 20 chr11:47199021-47199041 8.86e-01 20 chr17:21002783-21002803 7.80e-01 20 chr20:30556381-30556401 6.18e-01 20 chr3:183967341-183967361 6.61e-01 20 chr3:13462669-13462689 9.16e-01 20 chr1:211849013-211849033 2.16e-01 20 chr1:242011516-242011536 4.43e-01 20 chr5:169010776-169010796 5.75e-01 20 chr2:173421320-173421340 8.44e-01 20 chr20:1373947-1373967 2.69e-01 20 chr9:106856600-106856620 3.87e-01 20 chr9:126872768-126872788 8.69e-01 20 chr3:167098117-167098137 8.22e-01 20 chr20:54967268-54967288 1.02e-04 11_[+2(5.54e-06)]_1 chr4:122745034-122745054 8.77e-01 20 chr2:32853213-32853233 1.02e-01 20 chr14:81408085-81408105 9.70e-01 20 chr19:4769697-4769717 8.07e-02 20 chr2:25565442-25565462 9.53e-01 20 chr22:43253103-43253123 9.52e-01 20 chr7:129588788-129588808 1.70e-01 20 chr13:21750661-21750681 5.77e-01 20 chr6:159420776-159420796 4.43e-02 3_[+3(3.26e-05)]_9 chr15:36871480-36871500 3.17e-03 20 chr17:42786049-42786069 4.43e-02 12_[+4(3.96e-05)] chr5:1295117-1295137 4.10e-01 20 chr3:45637963-45637983 7.74e-01 20 chr2:74758066-74758086 3.60e-01 20 chr17:1419914-1419934 8.50e-01 20 chr12:110151454-11015147 3.03e-03 5_[+1(8.41e-05)]_7 chr6:26251097-26251117 1.30e-03 12_[+2(3.26e-05)] chr2:111435614-111435634 2.40e-01 20 chr19:45682121-45682141 6.29e-01 20 chr5:176737997-176738017 7.75e-01 20 chr20:37555057-37555077 6.19e-01 20 chr19:46195405-46195425 2.12e-03 11_[+1(4.79e-05)]_1 chr15:74988447-74988467 1.35e-03 1_[+4(1.22e-06)]_11 chr3:20227666-20227686 2.45e-01 20 chr11:74303609-74303629 9.82e-01 20 chr12:49717063-49717083 1.88e-01 1_[+3(9.57e-05)]_11 chr19:50169247-50169267 1.16e-02 20 chr13:25496917-25496937 3.22e-02 4_[+3(9.57e-05)]_8 chr20:39657103-39657123 2.01e-02 2_[+4(4.95e-05)]_10 chr10:99161001-99161021 1.98e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n10.farnam.hpc.yale.internal ********************************************************************************