******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/RUNX3.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr6:34880683-34880703 1.0000 20 chr19:8634147-8634167 1.0000 20 chr6:144904639-144904659 1.0000 20 chr12:10396600-10396620 1.0000 20 chr14:89791026-89791046 1.0000 20 chr11:123355358-12335537 1.0000 20 chr6:137477040-137477060 1.0000 20 chr22:29070226-29070246 1.0000 20 chr16:3839837-3839857 1.0000 20 chr1:183002537-183002557 1.0000 20 chr1:199911065-199911085 1.0000 20 chr3:185869107-185869127 1.0000 20 chr2:240189274-240189294 1.0000 20 chr1:221886640-221886660 1.0000 20 chr11:7597511-7597531 1.0000 20 chr12:96737545-96737565 1.0000 20 chr18:44472980-44473000 1.0000 20 chr3:148892923-148892943 1.0000 20 chr5:141397834-141397854 1.0000 20 chr7:97762696-97762716 1.0000 20 chr2:242383460-242383480 1.0000 20 chr2:58577819-58577839 1.0000 20 chr11:120215230-12021525 1.0000 20 chr10:115855874-11585589 1.0000 20 chr15:100259379-10025939 1.0000 20 chr5:137990243-137990263 1.0000 20 chr11:9860563-9860583 1.0000 20 chr21:34084532-34084552 1.0000 20 chr3:134013293-134013313 1.0000 20 chr5:58676330-58676350 1.0000 20 chr16:75353878-75353898 1.0000 20 chr7:30387848-30387868 1.0000 20 chr4:38711843-38711863 1.0000 20 chr10:17552398-17552418 1.0000 20 chr6:30477114-30477134 1.0000 20 chr8:98650858-98650878 1.0000 20 chr5:124065579-124065599 1.0000 20 chr1:92338351-92338371 1.0000 20 chr4:83214642-83214662 1.0000 20 chr20:62199359-62199379 1.0000 20 chr3:56759447-56759467 1.0000 20 chr21:36346718-36346738 1.0000 20 chr3:17621262-17621282 1.0000 20 chr18:6271017-6271037 1.0000 20 chr6:32054632-32054652 1.0000 20 chr4:186086876-186086896 1.0000 20 chr7:69069123-69069143 1.0000 20 chr2:69281758-69281778 1.0000 20 chr18:2978384-2978404 1.0000 20 chr7:91763170-91763190 1.0000 20 chr1:222827059-222827079 1.0000 20 chr13:111074230-11107425 1.0000 20 chr1:31342089-31342109 1.0000 20 chr7:35749237-35749257 1.0000 20 chr13:31613567-31613587 1.0000 20 chr2:36473610-36473630 1.0000 20 chr7:5371147-5371167 1.0000 20 chr2:62541179-62541199 1.0000 20 chr8:19554040-19554060 1.0000 20 chr5:88030989-88031009 1.0000 20 chr2:157753015-157753035 1.0000 20 chr6:35370113-35370133 1.0000 20 chr12:70711722-70711742 1.0000 20 chr6:70295529-70295549 1.0000 20 chr3:137019771-137019791 1.0000 20 chr16:78795450-78795470 1.0000 20 chr8:142046321-142046341 1.0000 20 chr1:67637867-67637887 1.0000 20 chr10:1140411-1140431 1.0000 20 chr12:101389770-10138979 1.0000 20 chr1:183164083-183164103 1.0000 20 chr4:145277687-145277707 1.0000 20 chr13:46753848-46753868 1.0000 20 chr16:53491772-53491792 1.0000 20 chr14:88472804-88472824 1.0000 20 chr3:56929003-56929023 1.0000 20 chr7:97767206-97767226 1.0000 20 chr12:117543844-11754386 1.0000 20 chr14:63991664-63991684 1.0000 20 chr12:4616213-4616233 1.0000 20 chr19:11390731-11390751 1.0000 20 chr16:75109282-75109302 1.0000 20 chr5:65850190-65850210 1.0000 20 chr1:99337287-99337307 1.0000 20 chr2:204463203-204463223 1.0000 20 chr8:142012440-142012460 1.0000 20 chr11:70270403-70270423 1.0000 20 chr15:66683169-66683189 1.0000 20 chr1:172715608-172715628 1.0000 20 chr21:36218236-36218256 1.0000 20 chr14:93052679-93052699 1.0000 20 chr16:11669521-11669541 1.0000 20 chr11:6424068-6424088 1.0000 20 chr6:5567753-5567773 1.0000 20 chr17:40608973-40608993 1.0000 20 chr5:72456153-72456173 1.0000 20 chr2:30458936-30458956 1.0000 20 chr1:24231378-24231398 1.0000 20 chr2:232891835-232891855 1.0000 20 chr3:71276176-71276196 1.0000 20 chr6:52020974-52020994 1.0000 20 chr11:43575510-43575530 1.0000 20 chrX:77906501-77906521 1.0000 20 chr2:146169241-146169261 1.0000 20 chrX:99881059-99881079 1.0000 20 chr5:66502940-66502960 1.0000 20 chr8:9321437-9321457 1.0000 20 chr11:121428261-12142828 1.0000 20 chr1:200177102-200177122 1.0000 20 chr10:115954985-11595500 1.0000 20 chr2:148055564-148055584 1.0000 20 chr3:105086902-105086922 1.0000 20 chr10:58079350-58079370 1.0000 20 chr6:16504336-16504356 1.0000 20 chr15:38376674-38376694 1.0000 20 chr3:52705060-52705080 1.0000 20 chr2:88914084-88914104 1.0000 20 chr1:167080018-167080038 1.0000 20 chr14:68847105-68847125 1.0000 20 chr18:10787534-10787554 1.0000 20 chr19:46294444-46294464 1.0000 20 chr3:188027663-188027683 1.0000 20 chr8:56901987-56902007 1.0000 20 chr2:33497262-33497282 1.0000 20 chr14:51342265-51342285 1.0000 20 chr15:77732894-77732914 1.0000 20 chr17:55362801-55362821 1.0000 20 chr11:77934475-77934495 1.0000 20 chr4:77528787-77528807 1.0000 20 chr3:15333767-15333787 1.0000 20 chr3:23802760-23802780 1.0000 20 chr17:57719629-57719649 1.0000 20 chr1:151956893-151956913 1.0000 20 chr15:64185098-64185118 1.0000 20 chr18:74774636-74774656 1.0000 20 chr1:154417767-154417787 1.0000 20 chr21:36067881-36067901 1.0000 20 chr2:105746340-105746360 1.0000 20 chr5:73622960-73622980 1.0000 20 chr1:56991342-56991362 1.0000 20 chr15:101783028-10178304 1.0000 20 chr4:71544247-71544267 1.0000 20 chr1:21005364-21005384 1.0000 20 chr15:51641111-51641131 1.0000 20 chr22:35704854-35704874 1.0000 20 chr6:132777970-132777990 1.0000 20 chr1:181128941-181128961 1.0000 20 chr4:144538124-144538144 1.0000 20 chr10:121073380-12107340 1.0000 20 chr15:70772752-70772772 1.0000 20 chr16:57451092-57451112 1.0000 20 chr22:18250414-18250434 1.0000 20 chr14:93196501-93196521 1.0000 20 chr2:206511535-206511555 1.0000 20 chr11:81580925-81580945 1.0000 20 chr1:222828435-222828455 1.0000 20 chr17:26373652-26373672 1.0000 20 chr3:141217826-141217846 1.0000 20 chr12:14774931-14774951 1.0000 20 chr1:24192144-24192164 1.0000 20 chr1:169332776-169332796 1.0000 20 chr4:146220970-146220990 1.0000 20 chr14:69533649-69533669 1.0000 20 chr13:99796749-99796769 1.0000 20 chr3:178914066-178914086 1.0000 20 chr1:183040656-183040676 1.0000 20 chr9:93913445-93913465 1.0000 20 chr4:47533892-47533912 1.0000 20 chr1:206939825-206939845 1.0000 20 chr6:132006719-132006739 1.0000 20 chr2:192482518-192482538 1.0000 20 chr10:76926264-76926284 1.0000 20 chr5:54198776-54198796 1.0000 20 chr6:32653532-32653552 1.0000 20 chr12:123372276-12337229 1.0000 20 chr14:31677602-31677622 1.0000 20 chr2:75283691-75283711 1.0000 20 chr1:231596546-231596566 1.0000 20 chr3:158073903-158073923 1.0000 20 chr15:64263020-64263040 1.0000 20 chr2:187291584-187291604 1.0000 20 chr14:75988794-75988814 1.0000 20 chr1:204490463-204490483 1.0000 20 chr7:93717216-93717236 1.0000 20 chr2:121067924-121067944 1.0000 20 chr6:148525351-148525371 1.0000 20 chr10:5489724-5489744 1.0000 20 chr10:97005313-97005333 1.0000 20 chr3:31261213-31261233 1.0000 20 chr9:101338044-101338064 1.0000 20 chr2:183901060-183901080 1.0000 20 chr7:140090816-140090836 1.0000 20 chr12:124965088-12496510 1.0000 20 chr8:42742920-42742940 1.0000 20 chr5:37112070-37112090 1.0000 20 chr1:205255875-205255895 1.0000 20 chr12:78389403-78389423 1.0000 20 chr1:165362427-165362447 1.0000 20 chr1:92270316-92270336 1.0000 20 chr1:157565323-157565343 1.0000 20 chr9:115461689-115461709 1.0000 20 chr3:67439853-67439873 1.0000 20 chr5:156646941-156646961 1.0000 20 chr16:27400790-27400810 1.0000 20 chr9:80825996-80826016 1.0000 20 chr7:11372313-11372333 1.0000 20 chr19:5139407-5139427 1.0000 20 chr9:124813820-124813840 1.0000 20 chr1:224356895-224356915 1.0000 20 chr6:169957054-169957074 1.0000 20 chr13:50941099-50941119 1.0000 20 chr21:35956657-35956677 1.0000 20 chr14:36403916-36403936 1.0000 20 chr16:75414269-75414289 1.0000 20 chr20:23123001-23123021 1.0000 20 chr11:87912536-87912556 1.0000 20 chr11:112454194-11245421 1.0000 20 chr16:11456017-11456037 1.0000 20 chr16:87441364-87441384 1.0000 20 chr18:21589809-21589829 1.0000 20 chr9:115982393-115982413 1.0000 20 chr14:81053767-81053787 1.0000 20 chr14:71795031-71795051 1.0000 20 chr7:130651534-130651554 1.0000 20 chr1:114483473-114483493 1.0000 20 chr3:40226719-40226739 1.0000 20 chrX:18874491-18874511 1.0000 20 chr6:137355196-137355216 1.0000 20 chr9:102029033-102029053 1.0000 20 chr5:91790927-91790947 1.0000 20 chr11:35167027-35167047 1.0000 20 chr18:56317512-56317532 1.0000 20 chr1:101588246-101588266 1.0000 20 chr11:76338100-76338120 1.0000 20 chr16:53552793-53552813 1.0000 20 chr8:81276655-81276675 1.0000 20 chr20:19918484-19918504 1.0000 20 chr9:21761509-21761529 1.0000 20 chr8:101511718-101511738 1.0000 20 chr8:125539646-125539666 1.0000 20 chr19:16478222-16478242 1.0000 20 chr16:74970980-74971000 1.0000 20 chr10:8175243-8175263 1.0000 20 chr8:12623001-12623021 1.0000 20 chr1:16246004-16246024 1.0000 20 chr11:112043271-11204329 1.0000 20 chr12:48262444-48262464 1.0000 20 chr4:26199183-26199203 1.0000 20 chr7:83428067-83428087 1.0000 20 chr1:174938020-174938040 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_RUNX3/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/RUNX3.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.252 C 0.218 G 0.249 T 0.281 Background letter frequencies (from file dataset with add-one prior applied): A 0.252 C 0.218 G 0.249 T 0.281 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF WAACCACA MEME-1 width = 8 sites = 55 llr = 453 E-value = 4.0e-062 ******************************************************************************** -------------------------------------------------------------------------------- Motif WAACCACA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 57a::919 pos.-specific C 22:aa19: probability G :1:::1:: matrix T 3::::::1 bits 2.2 * 2.0 *** 1.8 *** 1.5 *** ** Relative 1.3 ****** Entropy 1.1 ****** (11.9 bits) 0.9 ******* 0.7 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAACCACA consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAACCACA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr4:26199183-26199203 6 1.05e-05 TGCTC AAACCACA GATTTCC chr8:125539646-125539666 7 1.05e-05 atgtca aaaccaca aaaaag chr3:40226719-40226739 9 1.05e-05 GTTTGGGT AAACCACA GTAA chr12:124965088-12496510 4 1.05e-05 AGC AAACCACA GGTGCTTAA chr7:140090816-140090836 9 1.05e-05 tagattca aaaccaca aacc chr2:187291584-187291604 1 1.05e-05 . aaaccaca AACCACACTG chr3:158073903-158073923 11 1.05e-05 caggtaactg aaaccaca ga chr10:76926264-76926284 7 1.05e-05 TGAGGT AAACCACA GTGATG chr3:141217826-141217846 4 1.05e-05 GGC AAACCACA GGAAGATCC chr11:81580925-81580945 7 1.05e-05 gtggcc aaaccaca tcctgg chr4:144538124-144538144 11 1.05e-05 GCCTGACCAA AAACCACA GG chr8:19554040-19554060 10 1.05e-05 GTGGCTGAA AAACCaca gta chr3:17621262-17621282 2 1.05e-05 a aaaccaca gaaagcaaaa chr4:83214642-83214662 10 1.05e-05 gagtaacag aaaccaca gaa chr5:124065579-124065599 5 1.05e-05 ATTT AAACCACA TCTACCAC chr4:38711843-38711863 4 1.05e-05 ttc aaaccaca gcccacaaa chr5:137990243-137990263 10 1.05e-05 GGTTTAAAA AAACCACA TTG chr2:240189274-240189294 8 1.05e-05 AAACGTT AAACCACA GCTCC chr1:157565323-157565343 4 2.23e-05 GGT TAACCACA TCCCTAGCT chr2:36473610-36473630 2 2.23e-05 A TAACCACA AAAGAAATTC chr7:35749237-35749257 1 2.23e-05 . TAACCACA GTAGCCACTG chr11:7597511-7597531 6 2.23e-05 CCGTG TAACCACA GTTCCCA chr9:115461689-115461709 11 3.14e-05 tacctgtggt caaccaca gt chr2:146169241-146169261 13 3.14e-05 agaaatcaaa caaccaca chr12:101389770-10138979 3 3.14e-05 GT CAACCACA ATGGTCAATT chr2:157753015-157753035 1 3.14e-05 . CAACCACA GAATGTTTCC chr2:62541179-62541199 12 3.14e-05 CCTGCCCCTG CAACCACA C chr7:91763170-91763190 11 3.14e-05 CAGACCGCTA CAACCACA AA chr1:181128941-181128961 3 4.05e-05 ac acaccaca agtgcagtaa chr2:204463203-204463223 4 5.27e-05 CCC AAACCAAA AATACCAAA chr20:62199359-62199379 9 5.27e-05 AACCACAT AAACCAAA GGGG chr12:48262444-48262464 13 6.28e-05 GCTTCATCCG TCACCACA chr3:56929003-56929023 1 6.28e-05 . TCACCACA ACTTTTGCTT chr6:32054632-32054652 8 6.28e-05 GCCACTC TCACCACA GTGAG chr15:66683169-66683189 7 8.11e-05 tttctt ccaccaca ctagtc chr13:50941099-50941119 7 9.02e-05 TTGATG AAACCCCA CTCAAC chr11:76338100-76338120 7 1.26e-04 ACCACA GAACCACA TGTGGG chr21:36218236-36218256 2 1.47e-04 T CAACCAAA GCTGTTTGCG chr5:88030989-88031009 11 1.47e-04 ACCGGCTGGG AAACCGCA GC chr22:18250414-18250434 8 1.58e-04 AACAATA TGACCACA AACCA chr19:8634147-8634167 11 1.58e-04 tggtcacagt tgaccaca ag chr3:52705060-52705080 13 1.80e-04 GGCAAGGGTG ATACCACA chr14:51342265-51342285 11 2.00e-04 AAGTGAAAGA ACACCAAA GC chr3:15333767-15333787 9 2.21e-04 TTCCCCTC TAACCACT ATGC chr4:186086876-186086896 4 2.21e-04 ttt taaccact tctaagcat chr12:96737545-96737565 3 2.73e-04 ag ttaccaca ttgtactaca chr9:124813820-124813840 6 3.54e-04 accca aaacccaa cacaccc chr8:101511718-101511738 13 4.65e-04 GGGGATTTAT TGACCAAA chr2:88914084-88914104 10 4.65e-04 cattacaaa tcaccgca acc chr1:114483473-114483493 8 5.21e-04 GCCACAA CCACCACT GTGAC chr10:8175243-8175263 9 5.84e-04 GTGAAGCT TAATCACA TCAT chr16:74970980-74971000 4 5.84e-04 GTC AAACCCCT GTCCTCAGA chr18:21589809-21589829 11 5.93e-04 AGGAGGCGTC CAACCCAA AG chr16:75109282-75109302 10 8.13e-04 GAAGCAGCA TGACCGCA GTG chr13:46753848-46753868 12 8.68e-04 GTGGTCTGGT GCACCAAA A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAACCACA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:26199183-26199203 1.1e-05 5_[+1]_7 chr8:125539646-125539666 1.1e-05 6_[+1]_6 chr3:40226719-40226739 1.1e-05 8_[+1]_4 chr12:124965088-12496510 1.1e-05 3_[+1]_9 chr7:140090816-140090836 1.1e-05 8_[+1]_4 chr2:187291584-187291604 1.1e-05 [+1]_12 chr3:158073903-158073923 1.1e-05 10_[+1]_2 chr10:76926264-76926284 1.1e-05 6_[+1]_6 chr3:141217826-141217846 1.1e-05 3_[+1]_9 chr11:81580925-81580945 1.1e-05 6_[+1]_6 chr4:144538124-144538144 1.1e-05 10_[+1]_2 chr8:19554040-19554060 1.1e-05 9_[+1]_3 chr3:17621262-17621282 1.1e-05 1_[+1]_11 chr4:83214642-83214662 1.1e-05 9_[+1]_3 chr5:124065579-124065599 1.1e-05 4_[+1]_8 chr4:38711843-38711863 1.1e-05 3_[+1]_9 chr5:137990243-137990263 1.1e-05 9_[+1]_3 chr2:240189274-240189294 1.1e-05 7_[+1]_5 chr1:157565323-157565343 2.2e-05 3_[+1]_9 chr2:36473610-36473630 2.2e-05 1_[+1]_11 chr7:35749237-35749257 2.2e-05 [+1]_12 chr11:7597511-7597531 2.2e-05 5_[+1]_7 chr9:115461689-115461709 3.1e-05 10_[+1]_2 chr2:146169241-146169261 3.1e-05 12_[+1] chr12:101389770-10138979 3.1e-05 2_[+1]_10 chr2:157753015-157753035 3.1e-05 [+1]_12 chr2:62541179-62541199 3.1e-05 11_[+1]_1 chr7:91763170-91763190 3.1e-05 10_[+1]_2 chr1:181128941-181128961 4e-05 2_[+1]_10 chr2:204463203-204463223 5.3e-05 3_[+1]_9 chr20:62199359-62199379 5.3e-05 8_[+1]_4 chr12:48262444-48262464 6.3e-05 12_[+1] chr3:56929003-56929023 6.3e-05 [+1]_12 chr6:32054632-32054652 6.3e-05 7_[+1]_5 chr15:66683169-66683189 8.1e-05 6_[+1]_6 chr13:50941099-50941119 9e-05 6_[+1]_6 chr11:76338100-76338120 0.00013 6_[+1]_6 chr21:36218236-36218256 0.00015 1_[+1]_11 chr5:88030989-88031009 0.00015 10_[+1]_2 chr22:18250414-18250434 0.00016 7_[+1]_5 chr19:8634147-8634167 0.00016 10_[+1]_2 chr3:52705060-52705080 0.00018 12_[+1] chr14:51342265-51342285 0.0002 10_[+1]_2 chr3:15333767-15333787 0.00022 8_[+1]_4 chr4:186086876-186086896 0.00022 3_[+1]_9 chr12:96737545-96737565 0.00027 2_[+1]_10 chr9:124813820-124813840 0.00035 5_[+1]_7 chr8:101511718-101511738 0.00046 12_[+1] chr2:88914084-88914104 0.00046 9_[+1]_3 chr1:114483473-114483493 0.00052 7_[+1]_5 chr10:8175243-8175263 0.00058 8_[+1]_4 chr16:74970980-74971000 0.00058 3_[+1]_9 chr18:21589809-21589829 0.00059 10_[+1]_2 chr16:75109282-75109302 0.00081 9_[+1]_3 chr13:46753848-46753868 0.00087 11_[+1]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAACCACA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WAACCACA width=8 seqs=55 chr4:26199183-26199203 ( 6) AAACCACA 1 chr8:125539646-125539666 ( 7) AAACCACA 1 chr3:40226719-40226739 ( 9) AAACCACA 1 chr12:124965088-12496510 ( 4) AAACCACA 1 chr7:140090816-140090836 ( 9) AAACCACA 1 chr2:187291584-187291604 ( 1) AAACCACA 1 chr3:158073903-158073923 ( 11) AAACCACA 1 chr10:76926264-76926284 ( 7) AAACCACA 1 chr3:141217826-141217846 ( 4) AAACCACA 1 chr11:81580925-81580945 ( 7) AAACCACA 1 chr4:144538124-144538144 ( 11) AAACCACA 1 chr8:19554040-19554060 ( 10) AAACCACA 1 chr3:17621262-17621282 ( 2) AAACCACA 1 chr4:83214642-83214662 ( 10) AAACCACA 1 chr5:124065579-124065599 ( 5) AAACCACA 1 chr4:38711843-38711863 ( 4) AAACCACA 1 chr5:137990243-137990263 ( 10) AAACCACA 1 chr2:240189274-240189294 ( 8) AAACCACA 1 chr1:157565323-157565343 ( 4) TAACCACA 1 chr2:36473610-36473630 ( 2) TAACCACA 1 chr7:35749237-35749257 ( 1) TAACCACA 1 chr11:7597511-7597531 ( 6) TAACCACA 1 chr9:115461689-115461709 ( 11) CAACCACA 1 chr2:146169241-146169261 ( 13) CAACCACA 1 chr12:101389770-10138979 ( 3) CAACCACA 1 chr2:157753015-157753035 ( 1) CAACCACA 1 chr2:62541179-62541199 ( 12) CAACCACA 1 chr7:91763170-91763190 ( 11) CAACCACA 1 chr1:181128941-181128961 ( 3) ACACCACA 1 chr2:204463203-204463223 ( 4) AAACCAAA 1 chr20:62199359-62199379 ( 9) AAACCAAA 1 chr12:48262444-48262464 ( 13) TCACCACA 1 chr3:56929003-56929023 ( 1) TCACCACA 1 chr6:32054632-32054652 ( 8) TCACCACA 1 chr15:66683169-66683189 ( 7) CCACCACA 1 chr13:50941099-50941119 ( 7) AAACCCCA 1 chr11:76338100-76338120 ( 7) GAACCACA 1 chr21:36218236-36218256 ( 2) CAACCAAA 1 chr5:88030989-88031009 ( 11) AAACCGCA 1 chr22:18250414-18250434 ( 8) TGACCACA 1 chr19:8634147-8634167 ( 11) TGACCACA 1 chr3:52705060-52705080 ( 13) ATACCACA 1 chr14:51342265-51342285 ( 11) ACACCAAA 1 chr3:15333767-15333787 ( 9) TAACCACT 1 chr4:186086876-186086896 ( 4) TAACCACT 1 chr12:96737545-96737565 ( 3) TTACCACA 1 chr9:124813820-124813840 ( 6) AAACCCAA 1 chr8:101511718-101511738 ( 13) TGACCAAA 1 chr2:88914084-88914104 ( 10) TCACCGCA 1 chr1:114483473-114483493 ( 8) CCACCACT 1 chr10:8175243-8175263 ( 9) TAATCACA 1 chr16:74970980-74971000 ( 4) AAACCCCT 1 chr18:21589809-21589829 ( 11) CAACCCAA 1 chr16:75109282-75109302 ( 10) TGACCGCA 1 chr13:46753848-46753868 ( 12) GCACCAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAACCACA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.83209 E= 4.0e-062 96 -26 -278 5 153 -42 -178 -295 199 -1243 -1243 -1243 -1243 217 -1243 -394 -1243 219 -1243 -1243 179 -159 -219 -1243 -79 197 -1243 -1243 188 -1243 -1243 -195 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAACCACA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 55 E= 4.0e-062 0.490909 0.181818 0.036364 0.290909 0.727273 0.163636 0.072727 0.036364 1.000000 0.000000 0.000000 0.000000 0.000000 0.981818 0.000000 0.018182 0.000000 1.000000 0.000000 0.000000 0.872727 0.072727 0.054545 0.000000 0.145455 0.854545 0.000000 0.000000 0.927273 0.000000 0.000000 0.072727 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAACCACA MEME-1 regular expression -------------------------------------------------------------------------------- [AT]AACCACA -------------------------------------------------------------------------------- Time 3.12 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTGGTTW MEME-2 width = 8 sites = 64 llr = 461 E-value = 6.0e-050 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTGGTTW MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::1:::13 pos.-specific C ::::::2: probability G :9:aa:11 matrix T a18::975 bits 2.2 2.0 ** 1.8 ** 1.5 ** *** Relative 1.3 ** *** Entropy 1.1 ****** (10.4 bits) 0.9 ****** 0.7 ****** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGTGGTTT consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGGTTW MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:174938020-174938040 6 2.70e-05 TGTCT TGTGGTTT CTCTTGA chr20:19918484-19918504 5 2.70e-05 cctc tgtggttt ctgttggt chr6:137355196-137355216 11 2.70e-05 TTTTGATTAC TGTGGTTT GA chrX:18874491-18874511 7 2.70e-05 tggtct tgtggttt tgactt chr14:71795031-71795051 4 2.70e-05 TTC TGTGGTTT GGGTGGGAT chr19:5139407-5139427 9 2.70e-05 agtgtggt tgtggttt ggag chr10:97005313-97005333 8 2.70e-05 AATAAGT TGTGGTTT CTCAC chr12:123372276-12337229 2 2.70e-05 A TGTGGTTT ACTGGTTTCA chr3:178914066-178914086 10 2.70e-05 TGTGTGGCT TGTGGTTT TGG chr17:57719629-57719649 5 2.70e-05 CTTT TGTGGTTT TGAATTTA chr6:5567753-5567773 11 2.70e-05 TATTATTTGA TGTGGTTT TT chr5:65850190-65850210 8 2.70e-05 CCAAGTA TGTGGTTT TCTGC chr19:11390731-11390751 10 2.70e-05 AAGCTTCTC TGTGGTTT TGA chr13:31613567-31613587 6 2.70e-05 ctatt tgtggttt gtggtca chr21:36346718-36346738 1 2.70e-05 . TGTGGTTT TTACTCAAAA chr10:115855874-11585589 10 2.70e-05 AGTTCGGCT TGTGGTTT TCC chr22:29070226-29070246 9 2.70e-05 TTTCTGTT TGTGGttt tttc chr2:192482518-192482538 3 5.13e-05 TT TGTGGTTA TGATTTCCTG chr18:10787534-10787554 3 5.13e-05 AT TGTGGTTA TCATTGCTCA chr2:30458936-30458956 3 5.13e-05 TT TGTGGTTA CAGGTGAGGT chr11:6424068-6424088 12 5.13e-05 CCAAACAGGA TGTGGTTA G chr18:6271017-6271037 9 5.13e-05 GTGCCCTC Tgtggtta caga chr9:115982393-115982413 1 7.53e-05 . tgtggttg caatagaaac chr2:105746340-105746360 6 7.53e-05 tttct tgtggttg taaagga chr1:165362427-165362447 8 9.63e-05 GTTCCtc tgtggtct gtggt chr1:169332776-169332796 5 9.63e-05 TACG TGTGGTCT GGCCTCTG chr13:46753848-46753868 1 9.63e-05 . TGTGGTCT GGTGCACCAA chr15:64263020-64263040 10 1.15e-04 GAAGTCCTA TGTGGTCA CAG chr13:99796749-99796769 1 1.15e-04 . TGTGGTCA AGCTCTAACC chr14:69533649-69533669 5 1.15e-04 GCAA TGTGGTCA AGATTTCT chr7:97767206-97767226 12 1.15e-04 CTGGTGAATT TGTGGTCA C chr6:148525351-148525371 12 1.39e-04 CAGAAACCCT TGAGGTTT A chr10:121073380-12107340 8 1.39e-04 TTGAGGC TGAGGTTT TTCTG chr10:115954985-11595500 13 1.39e-04 ttaagtttgt tgaggttt chr17:40608973-40608993 12 1.85e-04 AGCAGCTGAC TGAGGTTA A chr1:205255875-205255895 9 2.31e-04 tggtgagc tgtggtga gctg chr21:34084532-34084552 10 2.31e-04 ACTGCAGTT TGTGGTGA GCT chr6:144904639-144904659 4 2.31e-04 GGC TGTGGTGA GAACGTCTC chr7:130651534-130651554 3 2.71e-04 AA TGTGGTAA GAATTTAGTG chr14:81053767-81053787 12 2.71e-04 GTCTTGGGTA TGTGGTAA A chr6:16504336-16504356 9 2.71e-04 GCAAGAAA TGTGGTAA ATGT chr10:5489724-5489744 4 3.23e-04 GGC TTTGGTTT TTGTTCTTG chr4:47533892-47533912 2 3.23e-04 A TTTGGTTT ATGCGGTGGA chr1:154417767-154417787 13 3.23e-04 CCTGTGGCTT TGTGGTTC chr2:69281758-69281778 5 3.23e-04 ATCC TTTGGTTT GGTTGAAA chr7:97762696-97762716 5 3.23e-04 TATT TGTGGTTC CTCAAGTC chr18:74774636-74774656 12 3.86e-04 AGGAAGGCTG CGTGGTTT T chr11:43575510-43575530 10 4.96e-04 ATGAATGAA TGTGGTGG TGT chr1:172715608-172715628 1 4.96e-04 . TGCGGTTA TACAGTAAGC chr10:1140411-1140431 9 4.96e-04 GAGAGAAA TGTGGTGG GAGG chr5:58676330-58676350 8 5.75e-04 TGGTCAG TGAGGTCA CAAGA chr18:44472980-44473000 7 5.75e-04 ccacac tgTGGTAG CTCTAA chr11:77934475-77934495 4 7.23e-04 GGT TGCGGTTG ACAGGGGGT chr14:31677602-31677622 12 7.79e-04 CTACGTTTCT TGTGGCTT G chr11:70270403-70270423 4 8.53e-04 TGT TGTGGGTG TCTGTGGTC chr3:134013293-134013313 7 8.53e-04 GGAGGA TGTGGGTG TAGGCC chr9:101338044-101338064 2 9.72e-04 g ttaggttt gCACCAGAGC chr6:35370113-35370133 8 9.72e-04 CAGTGGC TGCGGTCA GAGGT chr11:121428261-12142828 8 1.02e-03 TAGTCAT CGTGGTCA GGTAA chr12:10396600-10396620 7 1.02e-03 AGAAAC TGTTGTTT AGTGGT chr1:67637867-67637887 9 1.16e-03 AGGGTTTT TGAGGGTT TTGT chr1:222827059-222827079 3 1.27e-03 AC TGAGGTGG TTGGAGGCAT chrX:99881059-99881079 8 1.36e-03 TGGTTTC CGAGGTTA AGTGG chr10:58079350-58079370 7 1.51e-03 CCATAT TTTGGTAa atgtgg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGGTTW MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:174938020-174938040 2.7e-05 5_[+2]_7 chr20:19918484-19918504 2.7e-05 4_[+2]_8 chr6:137355196-137355216 2.7e-05 10_[+2]_2 chrX:18874491-18874511 2.7e-05 6_[+2]_6 chr14:71795031-71795051 2.7e-05 3_[+2]_9 chr19:5139407-5139427 2.7e-05 8_[+2]_4 chr10:97005313-97005333 2.7e-05 7_[+2]_5 chr12:123372276-12337229 2.7e-05 1_[+2]_11 chr3:178914066-178914086 2.7e-05 9_[+2]_3 chr17:57719629-57719649 2.7e-05 4_[+2]_8 chr6:5567753-5567773 2.7e-05 10_[+2]_2 chr5:65850190-65850210 2.7e-05 7_[+2]_5 chr19:11390731-11390751 2.7e-05 9_[+2]_3 chr13:31613567-31613587 2.7e-05 5_[+2]_7 chr21:36346718-36346738 2.7e-05 [+2]_12 chr10:115855874-11585589 2.7e-05 9_[+2]_3 chr22:29070226-29070246 2.7e-05 8_[+2]_4 chr2:192482518-192482538 5.1e-05 2_[+2]_10 chr18:10787534-10787554 5.1e-05 2_[+2]_10 chr2:30458936-30458956 5.1e-05 2_[+2]_10 chr11:6424068-6424088 5.1e-05 11_[+2]_1 chr18:6271017-6271037 5.1e-05 8_[+2]_4 chr9:115982393-115982413 7.5e-05 [+2]_12 chr2:105746340-105746360 7.5e-05 5_[+2]_7 chr1:165362427-165362447 9.6e-05 7_[+2]_5 chr1:169332776-169332796 9.6e-05 4_[+2]_8 chr13:46753848-46753868 9.6e-05 [+2]_12 chr15:64263020-64263040 0.00012 9_[+2]_3 chr13:99796749-99796769 0.00012 [+2]_12 chr14:69533649-69533669 0.00012 4_[+2]_8 chr7:97767206-97767226 0.00012 11_[+2]_1 chr6:148525351-148525371 0.00014 11_[+2]_1 chr10:121073380-12107340 0.00014 7_[+2]_5 chr10:115954985-11595500 0.00014 12_[+2] chr17:40608973-40608993 0.00019 11_[+2]_1 chr1:205255875-205255895 0.00023 8_[+2]_4 chr21:34084532-34084552 0.00023 9_[+2]_3 chr6:144904639-144904659 0.00023 3_[+2]_9 chr7:130651534-130651554 0.00027 2_[+2]_10 chr14:81053767-81053787 0.00027 11_[+2]_1 chr6:16504336-16504356 0.00027 8_[+2]_4 chr10:5489724-5489744 0.00032 3_[+2]_9 chr4:47533892-47533912 0.00032 1_[+2]_11 chr1:154417767-154417787 0.00032 12_[+2] chr2:69281758-69281778 0.00032 4_[+2]_8 chr7:97762696-97762716 0.00032 4_[+2]_8 chr18:74774636-74774656 0.00039 11_[+2]_1 chr11:43575510-43575530 0.0005 9_[+2]_3 chr1:172715608-172715628 0.0005 [+2]_12 chr10:1140411-1140431 0.0005 8_[+2]_4 chr5:58676330-58676350 0.00058 7_[+2]_5 chr18:44472980-44473000 0.00058 6_[+2]_6 chr11:77934475-77934495 0.00072 3_[+2]_9 chr14:31677602-31677622 0.00078 11_[+2]_1 chr11:70270403-70270423 0.00085 3_[+2]_9 chr3:134013293-134013313 0.00085 6_[+2]_6 chr9:101338044-101338064 0.00097 1_[+2]_11 chr6:35370113-35370133 0.00097 7_[+2]_5 chr11:121428261-12142828 0.001 7_[+2]_5 chr12:10396600-10396620 0.001 6_[+2]_6 chr1:67637867-67637887 0.0012 8_[+2]_4 chr1:222827059-222827079 0.0013 2_[+2]_10 chrX:99881059-99881079 0.0014 7_[+2]_5 chr10:58079350-58079370 0.0015 6_[+2]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGGTTW MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTGGTTW width=8 seqs=64 chr1:174938020-174938040 ( 6) TGTGGTTT 1 chr20:19918484-19918504 ( 5) TGTGGTTT 1 chr6:137355196-137355216 ( 11) TGTGGTTT 1 chrX:18874491-18874511 ( 7) TGTGGTTT 1 chr14:71795031-71795051 ( 4) TGTGGTTT 1 chr19:5139407-5139427 ( 9) TGTGGTTT 1 chr10:97005313-97005333 ( 8) TGTGGTTT 1 chr12:123372276-12337229 ( 2) TGTGGTTT 1 chr3:178914066-178914086 ( 10) TGTGGTTT 1 chr17:57719629-57719649 ( 5) TGTGGTTT 1 chr6:5567753-5567773 ( 11) TGTGGTTT 1 chr5:65850190-65850210 ( 8) TGTGGTTT 1 chr19:11390731-11390751 ( 10) TGTGGTTT 1 chr13:31613567-31613587 ( 6) TGTGGTTT 1 chr21:36346718-36346738 ( 1) TGTGGTTT 1 chr10:115855874-11585589 ( 10) TGTGGTTT 1 chr22:29070226-29070246 ( 9) TGTGGTTT 1 chr2:192482518-192482538 ( 3) TGTGGTTA 1 chr18:10787534-10787554 ( 3) TGTGGTTA 1 chr2:30458936-30458956 ( 3) TGTGGTTA 1 chr11:6424068-6424088 ( 12) TGTGGTTA 1 chr18:6271017-6271037 ( 9) TGTGGTTA 1 chr9:115982393-115982413 ( 1) TGTGGTTG 1 chr2:105746340-105746360 ( 6) TGTGGTTG 1 chr1:165362427-165362447 ( 8) TGTGGTCT 1 chr1:169332776-169332796 ( 5) TGTGGTCT 1 chr13:46753848-46753868 ( 1) TGTGGTCT 1 chr15:64263020-64263040 ( 10) TGTGGTCA 1 chr13:99796749-99796769 ( 1) TGTGGTCA 1 chr14:69533649-69533669 ( 5) TGTGGTCA 1 chr7:97767206-97767226 ( 12) TGTGGTCA 1 chr6:148525351-148525371 ( 12) TGAGGTTT 1 chr10:121073380-12107340 ( 8) TGAGGTTT 1 chr10:115954985-11595500 ( 13) TGAGGTTT 1 chr17:40608973-40608993 ( 12) TGAGGTTA 1 chr1:205255875-205255895 ( 9) TGTGGTGA 1 chr21:34084532-34084552 ( 10) TGTGGTGA 1 chr6:144904639-144904659 ( 4) TGTGGTGA 1 chr7:130651534-130651554 ( 3) TGTGGTAA 1 chr14:81053767-81053787 ( 12) TGTGGTAA 1 chr6:16504336-16504356 ( 9) TGTGGTAA 1 chr10:5489724-5489744 ( 4) TTTGGTTT 1 chr4:47533892-47533912 ( 2) TTTGGTTT 1 chr1:154417767-154417787 ( 13) TGTGGTTC 1 chr2:69281758-69281778 ( 5) TTTGGTTT 1 chr7:97762696-97762716 ( 5) TGTGGTTC 1 chr18:74774636-74774656 ( 12) CGTGGTTT 1 chr11:43575510-43575530 ( 10) TGTGGTGG 1 chr1:172715608-172715628 ( 1) TGCGGTTA 1 chr10:1140411-1140431 ( 9) TGTGGTGG 1 chr5:58676330-58676350 ( 8) TGAGGTCA 1 chr18:44472980-44473000 ( 7) TGTGGTAG 1 chr11:77934475-77934495 ( 4) TGCGGTTG 1 chr14:31677602-31677622 ( 12) TGTGGCTT 1 chr11:70270403-70270423 ( 4) TGTGGGTG 1 chr3:134013293-134013313 ( 7) TGTGGGTG 1 chr9:101338044-101338064 ( 2) TTAGGTTT 1 chr6:35370113-35370133 ( 8) TGCGGTCA 1 chr11:121428261-12142828 ( 8) CGTGGTCA 1 chr12:10396600-10396620 ( 7) TGTTGTTT 1 chr1:67637867-67637887 ( 9) TGAGGGTT 1 chr1:222827059-222827079 ( 3) TGAGGTGG 1 chrX:99881059-99881079 ( 8) CGAGGTTA 1 chr10:58079350-58079370 ( 7) TTTGGTAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGGTTW MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 6.97674 E= 6.0e-050 -1264 -222 -1264 176 -1264 -1264 189 -184 -84 -222 -1264 153 -1264 -1264 198 -416 -1264 -1264 200 -1264 -1264 -380 -241 174 -169 -48 -141 126 45 -280 -83 79 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGGTTW MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 64 E= 6.0e-050 0.000000 0.046875 0.000000 0.953125 0.000000 0.000000 0.921875 0.078125 0.140625 0.046875 0.000000 0.812500 0.000000 0.000000 0.984375 0.015625 0.000000 0.000000 1.000000 0.000000 0.000000 0.015625 0.046875 0.937500 0.078125 0.156250 0.093750 0.671875 0.343750 0.031250 0.140625 0.484375 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGGTTW MEME-2 regular expression -------------------------------------------------------------------------------- TGTGGTT[TA] -------------------------------------------------------------------------------- Time 3.84 secs. ******************************************************************************** ******************************************************************************** MOTIF AGGAAGTG MEME-3 width = 8 sites = 12 llr = 99 E-value = 7.3e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGGAAGTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 8::9812: pos.-specific C :::1:2:1 probability G 3aa::8:9 matrix T ::::2:8: bits 2.2 2.0 ** 1.8 ** 1.5 *** * Relative 1.3 **** ** Entropy 1.1 ******** (11.9 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGGAAGTG consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGAAGTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:120215230-12021525 13 1.73e-05 GTTTACTGAG AGGAAGTG chr1:221886640-221886660 2 1.73e-05 G AGGAAGTG GCATGCAGAG chr19:46294444-46294464 9 3.44e-05 AACCCAGA GGGAAGTG GGGA chr7:83428067-83428087 11 6.50e-05 ccacacatag aggaactg ag chr14:36403916-36403936 8 6.50e-05 ACATGCA AGGAAGAG CAGAA chr15:64185098-64185118 11 6.50e-05 ACAGACAGGC AGGAAGAG GG chr8:12623001-12623021 2 8.43e-05 C AGGATGTG CTGGCCACAG chr16:53552793-53552813 6 8.43e-05 CAGGC AGGATGTG GGAAGGG chr3:185869107-185869127 7 1.02e-04 CATTAT AGGAAATG ACAGTG chr16:87441364-87441384 9 1.32e-04 TTCAGATG AGGAAGTC TGAT chr2:75283691-75283711 7 1.62e-04 cagctt gggaactg tgagta chr1:24192144-24192164 6 2.76e-04 GAAGT GGGCAGTG AACTTGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGAAGTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:120215230-12021525 1.7e-05 12_[+3] chr1:221886640-221886660 1.7e-05 1_[+3]_11 chr19:46294444-46294464 3.4e-05 8_[+3]_4 chr7:83428067-83428087 6.5e-05 10_[+3]_2 chr14:36403916-36403936 6.5e-05 7_[+3]_5 chr15:64185098-64185118 6.5e-05 10_[+3]_2 chr8:12623001-12623021 8.4e-05 1_[+3]_11 chr16:53552793-53552813 8.4e-05 5_[+3]_7 chr3:185869107-185869127 0.0001 6_[+3]_6 chr16:87441364-87441384 0.00013 8_[+3]_4 chr2:75283691-75283711 0.00016 6_[+3]_6 chr1:24192144-24192164 0.00028 5_[+3]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGAAGTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGGAAGTG width=8 seqs=12 chr11:120215230-12021525 ( 13) AGGAAGTG 1 chr1:221886640-221886660 ( 2) AGGAAGTG 1 chr19:46294444-46294464 ( 9) GGGAAGTG 1 chr7:83428067-83428087 ( 11) AGGAACTG 1 chr14:36403916-36403936 ( 8) AGGAAGAG 1 chr15:64185098-64185118 ( 11) AGGAAGAG 1 chr8:12623001-12623021 ( 2) AGGATGTG 1 chr16:53552793-53552813 ( 6) AGGATGTG 1 chr3:185869107-185869127 ( 7) AGGAAATG 1 chr16:87441364-87441384 ( 9) AGGAAGTC 1 chr2:75283691-75283711 ( 7) GGGAACTG 1 chr1:24192144-24192164 ( 6) GGGCAGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGAAGTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.52481 E= 7.3e+002 157 -1023 0 -1023 -1023 -1023 200 -1023 -1023 -1023 200 -1023 186 -139 -1023 -1023 173 -1023 -1023 -75 -159 -39 159 -1023 -59 -1023 -1023 157 -1023 -139 188 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGAAGTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 7.3e+002 0.750000 0.000000 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.916667 0.083333 0.000000 0.000000 0.833333 0.000000 0.000000 0.166667 0.083333 0.166667 0.750000 0.000000 0.166667 0.000000 0.000000 0.833333 0.000000 0.083333 0.916667 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGAAGTG MEME-3 regular expression -------------------------------------------------------------------------------- [AG]GGAAGTG -------------------------------------------------------------------------------- Time 5.29 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCAHCAA MEME-4 width = 8 sites = 9 llr = 79 E-value = 6.7e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCAHCAA MEME-4 Description -------------------------------------------------------------------------------- Simplified A 12:a22aa pos.-specific C 97a:48:: probability G :::::::: matrix T :1::3::: bits 2.2 * 2.0 ** ** 1.8 * ** ** 1.5 * ** ** Relative 1.3 * ** *** Entropy 1.1 * ** *** (12.6 bits) 0.9 **** *** 0.7 **** *** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCCACCAA consensus A TA sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCAHCAA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr13:111074230-11107425 1 1.80e-05 . CCCATCAA AGGGAATTGA chr9:80825996-80826016 10 2.71e-05 GAAGCATCC CCCAACAA TGG chr16:11669521-11669541 3 2.71e-05 AT CCCAACAA CTCGCGGTCA chr6:132777970-132777990 7 4.54e-05 acactt cccacaaa ctcctt chr4:38711843-38711863 13 4.54e-05 caaaccacag cccacaaa chr12:117543844-11754386 1 5.71e-05 . CACATCAA ACAAGCAATG chr3:137019771-137019791 3 5.71e-05 cc cacatcaa agggagaCAA chr11:87912536-87912556 1 7.90e-05 . CTCACCAA GGTCGGGAAG chr3:23802760-23802780 1 1.09e-04 . ACCACCAA CTAAATGCGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCAHCAA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr13:111074230-11107425 1.8e-05 [+4]_12 chr9:80825996-80826016 2.7e-05 9_[+4]_3 chr16:11669521-11669541 2.7e-05 2_[+4]_10 chr6:132777970-132777990 4.5e-05 6_[+4]_6 chr4:38711843-38711863 4.5e-05 12_[+4] chr12:117543844-11754386 5.7e-05 [+4]_12 chr3:137019771-137019791 5.7e-05 2_[+4]_10 chr11:87912536-87912556 7.9e-05 [+4]_12 chr3:23802760-23802780 0.00011 [+4]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCAHCAA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCAHCAA width=8 seqs=9 chr13:111074230-11107425 ( 1) CCCATCAA 1 chr9:80825996-80826016 ( 10) CCCAACAA 1 chr16:11669521-11669541 ( 3) CCCAACAA 1 chr6:132777970-132777990 ( 7) CCCACAAA 1 chr4:38711843-38711863 ( 13) CCCACAAA 1 chr12:117543844-11754386 ( 1) CACATCAA 1 chr3:137019771-137019791 ( 3) CACATCAA 1 chr11:87912536-87912556 ( 1) CTCACCAA 1 chr3:23802760-23802780 ( 1) ACCACCAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCAHCAA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.79183 E= 6.7e+003 -118 202 -982 -982 -18 161 -982 -133 -982 219 -982 -982 199 -982 -982 -982 -18 102 -982 25 -18 183 -982 -982 199 -982 -982 -982 199 -982 -982 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCAHCAA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 6.7e+003 0.111111 0.888889 0.000000 0.000000 0.222222 0.666667 0.000000 0.111111 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.222222 0.444444 0.000000 0.333333 0.222222 0.777778 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCAHCAA MEME-4 regular expression -------------------------------------------------------------------------------- C[CA]CA[CTA][CA]AA -------------------------------------------------------------------------------- Time 6.04 secs. ******************************************************************************** ******************************************************************************** MOTIF SACAGCCC MEME-5 width = 8 sites = 3 llr = 33 E-value = 1.8e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif SACAGCCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :a:a:::: pos.-specific C 7:a::aaa probability G 3:::a::: matrix T :::::::: bits 2.2 * *** 2.0 ******* 1.8 ******* 1.5 ******* Relative 1.3 ******** Entropy 1.1 ******** (16.0 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CACAGCCC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SACAGCCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:56991342-56991362 1 7.79e-06 . CACAGCCC AGAGACAGTG chr1:31342089-31342109 1 7.79e-06 . CACAGCCC CCATCCCAGC chr6:52020974-52020994 6 1.67e-05 TGTTT GACAGCCC TTAGAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SACAGCCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:56991342-56991362 7.8e-06 [+5]_12 chr1:31342089-31342109 7.8e-06 [+5]_12 chr6:52020974-52020994 1.7e-05 5_[+5]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SACAGCCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SACAGCCC width=8 seqs=3 chr1:56991342-56991362 ( 1) CACAGCCC 1 chr1:31342089-31342109 ( 1) CACAGCCC 1 chr6:52020974-52020994 ( 6) GACAGCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SACAGCCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.5277 E= 1.8e+003 -823 161 42 -823 199 -823 -823 -823 -823 219 -823 -823 199 -823 -823 -823 -823 -823 200 -823 -823 219 -823 -823 -823 219 -823 -823 -823 219 -823 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SACAGCCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 1.8e+003 0.000000 0.666667 0.333333 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SACAGCCC MEME-5 regular expression -------------------------------------------------------------------------------- [CG]ACAGCCC -------------------------------------------------------------------------------- Time 6.66 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:34880683-34880703 9.31e-01 20 chr19:8634147-8634167 5.29e-03 20 chr6:144904639-144904659 8.38e-02 20 chr12:10396600-10396620 9.15e-02 20 chr14:89791026-89791046 1.11e-01 20 chr11:123355358-12335537 5.66e-01 20 chr6:137477040-137477060 7.02e-01 20 chr22:29070226-29070246 9.06e-02 8_[+2(2.70e-05)]_4 chr16:3839837-3839857 2.05e-01 20 chr1:183002537-183002557 9.21e-01 20 chr1:199911065-199911085 9.36e-01 20 chr3:185869107-185869127 4.92e-02 20 chr2:240189274-240189294 3.13e-04 7_[+1(1.05e-05)]_5 chr1:221886640-221886660 3.07e-02 1_[+3(1.73e-05)]_11 chr11:7597511-7597531 3.43e-03 5_[+1(2.23e-05)]_7 chr12:96737545-96737565 1.48e-01 20 chr18:44472980-44473000 1.44e-01 20 chr3:148892923-148892943 2.46e-01 20 chr5:141397834-141397854 3.06e-01 20 chr7:97762696-97762716 1.15e-01 20 chr2:242383460-242383480 6.82e-01 20 chr2:58577819-58577839 5.24e-01 20 chr11:120215230-12021525 4.07e-02 12_[+3(1.73e-05)] chr10:115855874-11585589 5.21e-02 9_[+2(2.70e-05)]_3 chr15:100259379-10025939 5.70e-01 20 chr5:137990243-137990263 1.44e-02 9_[+1(1.05e-05)]_3 chr11:9860563-9860583 6.98e-01 20 chr21:34084532-34084552 1.63e-01 20 chr3:134013293-134013313 7.48e-03 2_[+3(8.43e-05)]_10 chr5:58676330-58676350 2.14e-02 20 chr16:75353878-75353898 5.57e-01 20 chr7:30387848-30387868 3.59e-01 20 chr4:38711843-38711863 1.10e-07 3_[+1(1.05e-05)]_1_[+4(4.54e-05)] chr10:17552398-17552418 7.88e-01 20 chr6:30477114-30477134 8.97e-02 20 chr8:98650858-98650878 9.76e-01 20 chr5:124065579-124065599 1.24e-03 4_[+1(1.05e-05)]_8 chr1:92338351-92338371 8.27e-01 20 chr4:83214642-83214662 3.21e-04 9_[+1(1.05e-05)]_3 chr20:62199359-62199379 6.51e-04 8_[+1(5.27e-05)]_4 chr3:56759447-56759467 3.84e-01 20 chr21:36346718-36346738 4.80e-03 [+2(2.70e-05)]_12 chr3:17621262-17621282 3.79e-04 1_[+1(1.05e-05)]_11 chr18:6271017-6271037 7.48e-02 8_[+2(5.13e-05)]_4 chr6:32054632-32054652 3.58e-03 7_[+1(6.28e-05)]_5 chr4:186086876-186086896 8.59e-02 20 chr7:69069123-69069143 6.66e-02 20 chr2:69281758-69281778 3.36e-01 20 chr18:2978384-2978404 3.79e-01 20 chr7:91763170-91763190 3.83e-04 10_[+1(3.14e-05)]_2 chr1:222827059-222827079 5.26e-01 20 chr13:111074230-11107425 3.11e-04 [+4(1.80e-05)]_12 chr1:31342089-31342109 9.05e-04 [+5(7.79e-06)]_12 chr7:35749237-35749257 3.14e-03 [+1(2.23e-05)]_12 chr13:31613567-31613587 5.65e-02 5_[+2(2.70e-05)]_7 chr2:36473610-36473630 5.92e-04 1_[+1(2.23e-05)]_11 chr7:5371147-5371167 4.01e-01 20 chr2:62541179-62541199 1.93e-03 11_[+1(3.14e-05)]_1 chr8:19554040-19554060 3.05e-03 9_[+1(1.05e-05)]_3 chr5:88030989-88031009 3.13e-02 20 chr2:157753015-157753035 1.98e-03 [+1(3.14e-05)]_12 chr6:35370113-35370133 1.63e-01 20 chr12:70711722-70711742 1.74e-01 20 chr6:70295529-70295549 3.17e-01 20 chr3:137019771-137019791 6.84e-04 2_[+4(5.71e-05)]_10 chr16:78795450-78795470 3.82e-03 20 chr8:142046321-142046341 4.86e-01 20 chr1:67637867-67637887 3.99e-01 20 chr10:1140411-1140431 7.75e-02 20 chr12:101389770-10138979 4.29e-03 2_[+1(3.14e-05)]_10 chr1:183164083-183164103 4.23e-01 20 chr4:145277687-145277707 6.96e-01 20 chr13:46753848-46753868 9.01e-04 [+2(9.63e-05)]_12 chr16:53491772-53491792 3.51e-01 20 chr14:88472804-88472824 1.20e-01 20 chr3:56929003-56929023 1.35e-03 [+1(6.28e-05)]_12 chr7:97767206-97767226 1.61e-01 20 chr12:117543844-11754386 8.55e-04 [+4(5.71e-05)]_12 chr14:63991664-63991684 5.45e-01 20 chr12:4616213-4616233 6.78e-01 20 chr19:11390731-11390751 6.69e-02 9_[+2(2.70e-05)]_3 chr16:75109282-75109302 8.90e-02 20 chr5:65850190-65850210 1.15e-02 7_[+2(2.70e-05)]_5 chr1:99337287-99337307 9.46e-01 20 chr2:204463203-204463223 1.03e-03 3_[+1(5.27e-05)]_9 chr8:142012440-142012460 9.29e-01 20 chr11:70270403-70270423 3.90e-01 20 chr15:66683169-66683189 1.37e-02 6_[+1(8.11e-05)]_6 chr1:172715608-172715628 1.89e-01 20 chr21:36218236-36218256 1.12e-02 20 chr14:93052679-93052699 3.58e-01 20 chr16:11669521-11669541 2.93e-04 2_[+4(2.71e-05)]_10 chr11:6424068-6424088 4.17e-05 11_[+2(5.13e-05)]_1 chr6:5567753-5567773 4.66e-02 10_[+2(2.70e-05)]_2 chr17:40608973-40608993 6.69e-02 20 chr5:72456153-72456173 2.65e-01 20 chr2:30458936-30458956 6.14e-02 2_[+2(5.13e-05)]_10 chr1:24231378-24231398 1.58e-01 20 chr2:232891835-232891855 4.33e-01 20 chr3:71276176-71276196 9.36e-01 20 chr6:52020974-52020994 7.09e-03 5_[+5(1.67e-05)]_7 chr11:43575510-43575530 1.58e-01 20 chrX:77906501-77906521 4.20e-01 20 chr2:146169241-146169261 7.70e-04 12_[+1(3.14e-05)] chrX:99881059-99881079 2.52e-01 20 chr5:66502940-66502960 6.39e-01 20 chr8:9321437-9321457 9.12e-01 20 chr11:121428261-12142828 3.75e-01 20 chr1:200177102-200177122 2.87e-01 20 chr10:115954985-11595500 2.23e-01 20 chr2:148055564-148055584 3.97e-01 20 chr3:105086902-105086922 9.70e-01 20 chr10:58079350-58079370 1.89e-01 20 chr6:16504336-16504356 3.74e-02 20 chr15:38376674-38376694 6.66e-01 20 chr3:52705060-52705080 2.12e-02 20 chr2:88914084-88914104 4.73e-02 20 chr1:167080018-167080038 3.91e-01 20 chr14:68847105-68847125 2.94e-02 20 chr18:10787534-10787554 2.21e-02 2_[+2(5.13e-05)]_10 chr19:46294444-46294464 1.58e-02 8_[+3(3.44e-05)]_4 chr3:188027663-188027683 9.48e-01 20 chr8:56901987-56902007 3.97e-01 20 chr2:33497262-33497282 4.62e-01 20 chr14:51342265-51342285 8.34e-04 20 chr15:77732894-77732914 5.47e-01 20 chr17:55362801-55362821 9.73e-01 20 chr11:77934475-77934495 2.35e-01 20 chr4:77528787-77528807 8.89e-01 20 chr3:15333767-15333787 5.89e-02 20 chr3:23802760-23802780 1.92e-02 20 chr17:57719629-57719649 8.77e-02 4_[+2(2.70e-05)]_8 chr1:151956893-151956913 4.04e-01 20 chr15:64185098-64185118 2.72e-02 10_[+3(6.50e-05)]_2 chr18:74774636-74774656 5.81e-02 20 chr1:154417767-154417787 2.44e-01 20 chr21:36067881-36067901 4.06e-01 20 chr2:105746340-105746360 1.50e-01 5_[+2(7.53e-05)]_7 chr5:73622960-73622980 2.17e-01 20 chr1:56991342-56991362 2.42e-04 [+5(7.79e-06)]_12 chr15:101783028-10178304 6.56e-01 20 chr4:71544247-71544267 9.45e-01 20 chr1:21005364-21005384 5.54e-02 20 chr15:51641111-51641131 9.10e-01 20 chr22:35704854-35704874 6.72e-01 20 chr6:132777970-132777990 1.05e-03 6_[+4(4.54e-05)]_6 chr1:181128941-181128961 1.41e-04 2_[+1(4.05e-05)]_10 chr4:144538124-144538144 2.75e-04 10_[+1(1.05e-05)]_2 chr10:121073380-12107340 1.47e-02 20 chr15:70772752-70772772 3.36e-01 20 chr16:57451092-57451112 4.65e-01 20 chr22:18250414-18250434 2.95e-04 20 chr14:93196501-93196521 5.96e-01 20 chr2:206511535-206511555 2.28e-01 20 chr11:81580925-81580945 4.13e-04 6_[+1(1.05e-05)]_6 chr1:222828435-222828455 7.86e-01 20 chr17:26373652-26373672 8.63e-01 20 chr3:141217826-141217846 3.48e-04 3_[+1(1.05e-05)]_9 chr12:14774931-14774951 9.87e-01 20 chr1:24192144-24192164 1.43e-01 20 chr1:169332776-169332796 2.64e-02 4_[+2(9.63e-05)]_8 chr4:146220970-146220990 8.87e-01 20 chr14:69533649-69533669 1.09e-01 20 chr13:99796749-99796769 3.35e-02 20 chr3:178914066-178914086 5.62e-02 9_[+2(2.70e-05)]_3 chr1:183040656-183040676 2.40e-01 20 chr9:93913445-93913465 9.29e-01 20 chr4:47533892-47533912 2.14e-01 20 chr1:206939825-206939845 1.34e-01 20 chr6:132006719-132006739 3.79e-01 20 chr2:192482518-192482538 7.81e-02 2_[+2(5.13e-05)]_10 chr10:76926264-76926284 9.30e-05 6_[+1(1.05e-05)]_6 chr5:54198776-54198796 2.39e-01 20 chr6:32653532-32653552 9.30e-01 20 chr12:123372276-12337229 7.69e-02 1_[+2(2.70e-05)]_11 chr14:31677602-31677622 4.92e-01 20 chr2:75283691-75283711 8.44e-02 20 chr1:231596546-231596566 7.94e-01 20 chr3:158073903-158073923 3.98e-04 10_[+1(1.05e-05)]_2 chr15:64263020-64263040 2.66e-02 20 chr2:187291584-187291604 4.74e-05 [+1(1.05e-05)]_12 chr14:75988794-75988814 1.05e-01 20 chr1:204490463-204490483 9.50e-01 20 chr7:93717216-93717236 5.20e-01 20 chr2:121067924-121067944 9.58e-02 20 chr6:148525351-148525371 1.23e-02 20 chr10:5489724-5489744 3.41e-01 20 chr10:97005313-97005333 4.61e-02 7_[+2(2.70e-05)]_5 chr3:31261213-31261233 6.54e-01 20 chr9:101338044-101338064 9.06e-02 20 chr2:183901060-183901080 1.22e-01 20 chr7:140090816-140090836 6.14e-05 8_[+1(1.05e-05)]_4 chr12:124965088-12496510 3.07e-03 3_[+1(1.05e-05)]_9 chr8:42742920-42742940 3.14e-01 20 chr5:37112070-37112090 8.24e-01 20 chr1:205255875-205255895 9.27e-02 20 chr12:78389403-78389423 4.91e-01 20 chr1:165362427-165362447 5.68e-02 7_[+2(9.63e-05)]_5 chr1:92270316-92270336 5.45e-01 20 chr1:157565323-157565343 2.68e-04 3_[+1(2.23e-05)]_9 chr9:115461689-115461709 1.37e-04 10_[+1(3.14e-05)]_2 chr3:67439853-67439873 4.24e-01 20 chr5:156646941-156646961 8.66e-01 20 chr16:27400790-27400810 9.52e-01 20 chr9:80825996-80826016 3.71e-03 9_[+4(2.71e-05)]_3 chr7:11372313-11372333 3.13e-01 20 chr19:5139407-5139427 4.61e-02 8_[+2(2.70e-05)]_4 chr9:124813820-124813840 2.64e-03 20 chr1:224356895-224356915 8.63e-01 20 chr6:169957054-169957074 8.45e-01 20 chr13:50941099-50941119 3.08e-03 6_[+1(9.02e-05)]_6 chr21:35956657-35956677 9.87e-01 20 chr14:36403916-36403936 5.28e-02 7_[+3(6.50e-05)]_5 chr16:75414269-75414289 6.78e-01 20 chr20:23123001-23123021 9.03e-01 20 chr11:87912536-87912556 3.12e-03 [+4(7.90e-05)]_12 chr11:112454194-11245421 5.58e-01 20 chr16:11456017-11456037 8.16e-01 20 chr16:87441364-87441384 9.15e-02 20 chr18:21589809-21589829 5.36e-03 20 chr9:115982393-115982413 3.48e-02 [+2(7.53e-05)]_12 chr14:81053767-81053787 6.56e-02 20 chr14:71795031-71795051 8.85e-02 3_[+2(2.70e-05)]_9 chr7:130651534-130651554 1.94e-01 20 chr1:114483473-114483493 5.04e-03 20 chr3:40226719-40226739 9.32e-05 8_[+1(1.05e-05)]_4 chrX:18874491-18874511 8.67e-02 6_[+2(2.70e-05)]_6 chr6:137355196-137355216 5.23e-02 10_[+2(2.70e-05)]_2 chr9:102029033-102029053 5.96e-01 20 chr5:91790927-91790947 8.56e-01 20 chr11:35167027-35167047 7.42e-01 20 chr18:56317512-56317532 1.08e-01 20 chr1:101588246-101588266 8.63e-01 20 chr11:76338100-76338120 3.07e-03 20 chr16:53552793-53552813 1.70e-02 5_[+3(8.43e-05)]_7 chr8:81276655-81276675 4.89e-01 20 chr20:19918484-19918504 6.81e-02 4_[+2(2.70e-05)]_8 chr9:21761509-21761529 8.61e-01 20 chr8:101511718-101511738 5.66e-02 20 chr8:125539646-125539666 2.27e-04 6_[+1(1.05e-05)]_6 chr19:16478222-16478242 2.24e-01 20 chr16:74970980-74971000 4.00e-02 20 chr10:8175243-8175263 9.59e-03 20 chr8:12623001-12623021 2.57e-03 1_[+3(8.43e-05)]_11 chr1:16246004-16246024 9.57e-01 20 chr11:112043271-11204329 6.19e-02 20 chr12:48262444-48262464 2.74e-02 12_[+1(6.28e-05)] chr4:26199183-26199203 1.49e-03 5_[+1(1.05e-05)]_7 chr7:83428067-83428087 8.17e-03 10_[+3(6.50e-05)]_2 chr1:174938020-174938040 7.86e-02 5_[+2(2.70e-05)]_7 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n04.farnam.hpc.yale.internal ********************************************************************************