******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/RELB.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr1:99154023-99154043 1.0000 20 chr10:106098397-10609841 1.0000 20 chr17:80551009-80551029 1.0000 20 chr11:64795145-64795165 1.0000 20 chr16:30670158-30670178 1.0000 20 chr11:2959972-2959992 1.0000 20 chr8:24245212-24245232 1.0000 20 chr3:127309658-127309678 1.0000 20 chr3:79068751-79068771 1.0000 20 chr9:132772929-132772949 1.0000 20 chr3:119419555-119419575 1.0000 20 chr12:82349544-82349564 1.0000 20 chr12:121476935-12147695 1.0000 20 chr2:242067251-242067271 1.0000 20 chr8:120660765-120660785 1.0000 20 chr1:205449923-205449943 1.0000 20 chr10:125919670-12591969 1.0000 20 chr11:117049412-11704943 1.0000 20 chr4:90948890-90948910 1.0000 20 chr9:38319168-38319188 1.0000 20 chr16:2560073-2560093 1.0000 20 chr12:11718823-11718843 1.0000 20 chr3:49131794-49131814 1.0000 20 chr21:34696176-34696196 1.0000 20 chrX:129300155-129300175 1.0000 20 chr19:55988494-55988514 1.0000 20 chr14:92724910-92724930 1.0000 20 chr10:67261128-67261148 1.0000 20 chr17:76313131-76313151 1.0000 20 chr1:27018862-27018882 1.0000 20 chr19:49141153-49141173 1.0000 20 chr17:40346542-40346562 1.0000 20 chr1:54355537-54355557 1.0000 20 chr19:56159340-56159360 1.0000 20 chr9:16459346-16459366 1.0000 20 chr16:31084639-31084659 1.0000 20 chrX:9979520-9979540 1.0000 20 chr15:93461223-93461243 1.0000 20 chr14:23938977-23938997 1.0000 20 chr1:107993771-107993791 1.0000 20 chr16:70488365-70488385 1.0000 20 chr11:10879369-10879389 1.0000 20 chr1:93443298-93443318 1.0000 20 chr1:16693876-16693896 1.0000 20 chr7:43775550-43775570 1.0000 20 chr22:18484519-18484539 1.0000 20 chr17:36105327-36105347 1.0000 20 chr1:83953871-83953891 1.0000 20 chr9:139796995-139797015 1.0000 20 chr19:41814531-41814551 1.0000 20 chr8:8503959-8503979 1.0000 20 chr1:28559466-28559486 1.0000 20 chr18:28848206-28848226 1.0000 20 chr5:151129344-151129364 1.0000 20 chr12:7342126-7342146 1.0000 20 chr16:27420022-27420042 1.0000 20 chr3:122101985-122102005 1.0000 20 chr3:195842852-195842872 1.0000 20 chr1:894524-894544 1.0000 20 chr2:38265291-38265311 1.0000 20 chr10:102027360-10202738 1.0000 20 chrX:40730821-40730841 1.0000 20 chr4:40579234-40579254 1.0000 20 chr17:7155213-7155233 1.0000 20 chr10:103543112-10354313 1.0000 20 chr11:119622501-11962252 1.0000 20 chr11:72858885-72858905 1.0000 20 chr14:62219467-62219487 1.0000 20 chrX:9971806-9971826 1.0000 20 chr6:12119530-12119550 1.0000 20 chr6:84480812-84480832 1.0000 20 chr1:28189667-28189687 1.0000 20 chr17:73074809-73074829 1.0000 20 chr12:27430919-27430939 1.0000 20 chr7:128116865-128116885 1.0000 20 chr6:166749485-166749505 1.0000 20 chr17:27182078-27182098 1.0000 20 chr2:61244784-61244804 1.0000 20 chr16:21732614-21732634 1.0000 20 chr14:71067292-71067312 1.0000 20 chr1:154973399-154973419 1.0000 20 chr19:13001852-13001872 1.0000 20 chr10:35379526-35379546 1.0000 20 chr17:2126573-2126593 1.0000 20 chr11:47198333-47198353 1.0000 20 chr2:113599078-113599098 1.0000 20 chr1:110026866-110026886 1.0000 20 chr10:54725954-54725974 1.0000 20 chr2:131862617-131862637 1.0000 20 chr19:44294893-44294913 1.0000 20 chr9:30075777-30075797 1.0000 20 chr1:19278598-19278618 1.0000 20 chr3:50359053-50359073 1.0000 20 chr8:28862262-28862282 1.0000 20 chr2:95729076-95729096 1.0000 20 chr13:107026467-10702648 1.0000 20 chr2:113465974-113465994 1.0000 20 chr6:13383997-13384017 1.0000 20 chr6:30785206-30785226 1.0000 20 chr17:33288620-33288640 1.0000 20 chr4:113656750-113656770 1.0000 20 chr15:68325209-68325229 1.0000 20 chr12:65019347-65019367 1.0000 20 chr1:110069991-110070011 1.0000 20 chr16:86022595-86022615 1.0000 20 chr10:46222598-46222618 1.0000 20 chr16:30670365-30670385 1.0000 20 chr17:73663452-73663472 1.0000 20 chr17:62340831-62340851 1.0000 20 chr6:37530071-37530091 1.0000 20 chr1:11990039-11990059 1.0000 20 chr17:2305063-2305083 1.0000 20 chr2:160751936-160751956 1.0000 20 chr15:75628385-75628405 1.0000 20 chr11:62648152-62648172 1.0000 20 chr1:160174425-160174445 1.0000 20 chr6:33285657-33285677 1.0000 20 chr1:166139513-166139533 1.0000 20 chr19:925533-925553 1.0000 20 chr14:55878495-55878515 1.0000 20 chr19:45225657-45225677 1.0000 20 chr4:26322326-26322346 1.0000 20 chr7:30066450-30066470 1.0000 20 chr9:80507178-80507198 1.0000 20 chr3:117205986-117206006 1.0000 20 chr1:1624307-1624327 1.0000 20 chr17:7036232-7036252 1.0000 20 chr10:29948155-29948175 1.0000 20 chr16:88703757-88703777 1.0000 20 chr5:138514215-138514235 1.0000 20 chr2:225906167-225906187 1.0000 20 chr4:79372829-79372849 1.0000 20 chr11:71673793-71673813 1.0000 20 chr20:2083142-2083162 1.0000 20 chr7:123464665-123464685 1.0000 20 chrX:47880882-47880902 1.0000 20 chr19:35739333-35739353 1.0000 20 chr8:146277969-146277989 1.0000 20 chr2:228276302-228276322 1.0000 20 chr7:73699228-73699248 1.0000 20 chr11:60719860-60719880 1.0000 20 chr19:44258131-44258151 1.0000 20 chr5:156347613-156347633 1.0000 20 chr16:18938029-18938049 1.0000 20 chr2:226141091-226141111 1.0000 20 chr12:111351419-11135143 1.0000 20 chr1:2509958-2509978 1.0000 20 chr3:32726431-32726451 1.0000 20 chr12:57024217-57024237 1.0000 20 chr16:31276868-31276888 1.0000 20 chr16:30969096-30969116 1.0000 20 chr19:56154940-56154960 1.0000 20 chr12:89919927-89919947 1.0000 20 chr12:125919710-12591973 1.0000 20 chr7:37805654-37805674 1.0000 20 chr11:26629670-26629690 1.0000 20 chr12:12178230-12178250 1.0000 20 chr12:27863827-27863847 1.0000 20 chr19:12848294-12848314 1.0000 20 chr5:137548944-137548964 1.0000 20 chr15:79231386-79231406 1.0000 20 chr8:66546639-66546659 1.0000 20 chr7:102066464-102066484 1.0000 20 chr14:68699496-68699516 1.0000 20 chr12:118674980-11867500 1.0000 20 chr1:144908446-144908466 1.0000 20 chr6:36618846-36618866 1.0000 20 chr2:114341589-114341609 1.0000 20 chr10:94661915-94661935 1.0000 20 chr7:122830395-122830415 1.0000 20 chr9:114707641-114707661 1.0000 20 chr9:110514236-110514256 1.0000 20 chr12:123011814-12301183 1.0000 20 chr17:67112286-67112306 1.0000 20 chr11:72525219-72525239 1.0000 20 chr12:95076664-95076684 1.0000 20 chr12:14538104-14538124 1.0000 20 chr15:79269724-79269744 1.0000 20 chr9:137000969-137000989 1.0000 20 chr9:86323029-86323049 1.0000 20 chr7:87556132-87556152 1.0000 20 chr14:94812791-94812811 1.0000 20 chr14:74551702-74551722 1.0000 20 chr2:163175425-163175445 1.0000 20 chr17:17140924-17140944 1.0000 20 chr8:59508664-59508684 1.0000 20 chr12:14374106-14374126 1.0000 20 chr17:78518684-78518704 1.0000 20 chr9:92517506-92517526 1.0000 20 chr9:2087180-2087200 1.0000 20 chr17:47753917-47753937 1.0000 20 chr2:74347576-74347596 1.0000 20 chr5:137673675-137673695 1.0000 20 chrX:48796110-48796130 1.0000 20 chr20:18447915-18447935 1.0000 20 chr7:44790714-44790734 1.0000 20 chr12:127257150-12725717 1.0000 20 chr20:60982563-60982583 1.0000 20 chr9:131133727-131133747 1.0000 20 chr11:8553675-8553695 1.0000 20 chr2:153574738-153574758 1.0000 20 chr1:155057436-155057456 1.0000 20 chr19:4791741-4791761 1.0000 20 chr16:50775823-50775843 1.0000 20 chr9:19451814-19451834 1.0000 20 chr11:75479516-75479536 1.0000 20 chr10:51827618-51827638 1.0000 20 chr19:42758441-42758461 1.0000 20 chr11:118938532-11893855 1.0000 20 chr2:74710289-74710309 1.0000 20 chr1:154974793-154974813 1.0000 20 chr2:8666143-8666163 1.0000 20 chr21:39004158-39004178 1.0000 20 chr2:70331896-70331916 1.0000 20 chr1:154244957-154244977 1.0000 20 chr16:31886026-31886046 1.0000 20 chr4:152682079-152682099 1.0000 20 chr1:200860507-200860527 1.0000 20 chr2:24732402-24732422 1.0000 20 chr9:112178619-112178639 1.0000 20 chr19:46145779-46145799 1.0000 20 chr16:5083899-5083919 1.0000 20 chr12:96965259-96965279 1.0000 20 chr8:102778123-102778143 1.0000 20 chr19:17378323-17378343 1.0000 20 chr17:17140712-17140732 1.0000 20 chr17:26684731-26684751 1.0000 20 chr7:100472360-100472380 1.0000 20 chr14:99947821-99947841 1.0000 20 chr17:30007268-30007288 1.0000 20 chr3:16551778-16551798 1.0000 20 chr11:61524222-61524242 1.0000 20 chr3:52188639-52188659 1.0000 20 chr11:120528978-12052899 1.0000 20 chr1:151253955-151253975 1.0000 20 chr14:92588150-92588170 1.0000 20 chr1:33458327-33458347 1.0000 20 chr12:132195631-13219565 1.0000 20 chr17:38210593-38210613 1.0000 20 chrX:9965799-9965819 1.0000 20 chr1:155827124-155827144 1.0000 20 chr9:87374403-87374423 1.0000 20 chr7:92158156-92158176 1.0000 20 chr12:6772201-6772221 1.0000 20 chr11:43665839-43665859 1.0000 20 chr2:20776705-20776725 1.0000 20 chr7:26196154-26196174 1.0000 20 chr2:198870137-198870157 1.0000 20 chr12:114404049-11440406 1.0000 20 chr3:101546583-101546603 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_RELB/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/RELB.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.23 C 0.266 G 0.254 T 0.25 Background letter frequencies (from file dataset with add-one prior applied): A 0.23 C 0.266 G 0.254 T 0.25 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AAAGYCCC MEME-1 width = 8 sites = 13 llr = 118 E-value = 4.7e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAGYCCC MEME-1 Description -------------------------------------------------------------------------------- Simplified A a9a::::1 pos.-specific C :1:24aa9 probability G :::7:::: matrix T :::26::: bits 2.1 * * 1.9 * * ** 1.7 *** ** 1.5 *** *** Relative 1.3 *** *** Entropy 1.1 *** **** (13.1 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAGTCCC consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGYCCC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:127257150-12725717 8 1.45e-05 TTAGGGG AAAGTCCC CTTAG chr9:114707641-114707661 1 1.45e-05 . AAAGTCCC AGCTGCCTGT chr1:160174425-160174445 4 1.45e-05 AGG AAAGTCCC TGGGGTAGA chr13:107026467-10702648 10 1.45e-05 taacacagg aaagtccc agg chr9:30075777-30075797 1 1.45e-05 . AAAGTCCC CTTAGGGAAG chr11:72858885-72858905 3 1.45e-05 gg aaagtccc tgcctctccc chr1:894524-894544 8 3.00e-05 AGCAAGA AAAGCCCC CTTGG chr5:138514215-138514235 4 5.96e-05 ata aaactccc cacccactg chr19:46145779-46145799 6 9.10e-05 GAAGG AAATCCCC ACAGCTC chr7:73699228-73699248 6 9.10e-05 CTTGG AAACCCCC AACGAGG chr8:24245212-24245232 6 9.10e-05 cttga aaatcccc tcaaact chr2:160751936-160751956 9 1.20e-04 CTAAGAGG ACAGTCCC TGAA chr4:152682079-152682099 6 1.34e-04 GGGCG AAAGCCCA ACGTCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGYCCC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:127257150-12725717 1.5e-05 7_[+1]_5 chr9:114707641-114707661 1.5e-05 [+1]_12 chr1:160174425-160174445 1.5e-05 3_[+1]_9 chr13:107026467-10702648 1.5e-05 9_[+1]_3 chr9:30075777-30075797 1.5e-05 [+1]_12 chr11:72858885-72858905 1.5e-05 2_[+1]_10 chr1:894524-894544 3e-05 7_[+1]_5 chr5:138514215-138514235 6e-05 3_[+1]_9 chr19:46145779-46145799 9.1e-05 5_[+1]_7 chr7:73699228-73699248 9.1e-05 5_[+1]_7 chr8:24245212-24245232 9.1e-05 5_[+1]_7 chr2:160751936-160751956 0.00012 8_[+1]_4 chr4:152682079-152682099 0.00013 5_[+1]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGYCCC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAGYCCC width=8 seqs=13 chr12:127257150-12725717 ( 8) AAAGTCCC 1 chr9:114707641-114707661 ( 1) AAAGTCCC 1 chr1:160174425-160174445 ( 4) AAAGTCCC 1 chr13:107026467-10702648 ( 10) AAAGTCCC 1 chr9:30075777-30075797 ( 1) AAAGTCCC 1 chr11:72858885-72858905 ( 3) AAAGTCCC 1 chr1:894524-894544 ( 8) AAAGCCCC 1 chr5:138514215-138514235 ( 4) AAACTCCC 1 chr19:46145779-46145799 ( 6) AAATCCCC 1 chr7:73699228-73699248 ( 6) AAACCCCC 1 chr8:24245212-24245232 ( 6) AAATCCCC 1 chr2:160751936-160751956 ( 9) ACAGTCCC 1 chr4:152682079-152682099 ( 6) AAAGCCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGYCCC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.4923 E= 4.7e-003 212 -1035 -1035 -1035 201 -179 -1035 -1035 212 -1035 -1035 -1035 -1035 -79 145 -70 -1035 53 -1035 130 -1035 191 -1035 -1035 -1035 191 -1035 -1035 -158 179 -1035 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGYCCC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 4.7e-003 1.000000 0.000000 0.000000 0.000000 0.923077 0.076923 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.153846 0.692308 0.153846 0.000000 0.384615 0.000000 0.615385 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.076923 0.923077 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGYCCC MEME-1 regular expression -------------------------------------------------------------------------------- AAAG[TC]CCC -------------------------------------------------------------------------------- Time 2.08 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGRCTTT MEME-2 width = 8 sites = 9 llr = 83 E-value = 1.6e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGRCTTT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::42::: pos.-specific C :::17::: probability G aaa4:::: matrix T ::::1aaa bits 2.1 1.9 *** *** 1.7 *** *** 1.5 *** *** Relative 1.3 *** *** Entropy 1.1 *** *** (13.3 bits) 0.8 *** *** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGGACTTT consensus GA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGRCTTT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr16:31276868-31276888 3 1.57e-05 TA GGGACTTT CCAGGCACTC chr12:27430919-27430939 4 1.57e-05 GGA GGGACTTT TCAGGTCAT chr11:119622501-11962252 6 1.57e-05 CCCCT GGGACTTT TTAACAG chr12:12178230-12178250 12 3.30e-05 cctcctgcct ggggcttt c chr17:36105327-36105347 11 3.30e-05 GCCTAGGCGC GGGGCTTT TC chr17:30007268-30007288 4 4.65e-05 aaa gggaattt attacattg chr7:122830395-122830415 4 6.15e-05 cct ggggattt ccaggagac chr19:41814531-41814551 7 7.96e-05 GTGGCA GGGCCTTT AGTCTG chr2:95729076-95729096 9 1.11e-04 GGTTTTGT GGGGTTTT TTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGRCTTT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:31276868-31276888 1.6e-05 2_[+2]_10 chr12:27430919-27430939 1.6e-05 3_[+2]_9 chr11:119622501-11962252 1.6e-05 5_[+2]_7 chr12:12178230-12178250 3.3e-05 11_[+2]_1 chr17:36105327-36105347 3.3e-05 10_[+2]_2 chr17:30007268-30007288 4.7e-05 3_[+2]_9 chr7:122830395-122830415 6.1e-05 3_[+2]_9 chr19:41814531-41814551 8e-05 6_[+2]_6 chr2:95729076-95729096 0.00011 8_[+2]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGRCTTT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGRCTTT width=8 seqs=9 chr16:31276868-31276888 ( 3) GGGACTTT 1 chr12:27430919-27430939 ( 4) GGGACTTT 1 chr11:119622501-11962252 ( 6) GGGACTTT 1 chr12:12178230-12178250 ( 12) GGGGCTTT 1 chr17:36105327-36105347 ( 11) GGGGCTTT 1 chr17:30007268-30007288 ( 4) GGGAATTT 1 chr7:122830395-122830415 ( 4) GGGGATTT 1 chr19:41814531-41814551 ( 7) GGGCCTTT 1 chr2:95729076-95729096 ( 9) GGGGTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGRCTTT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.62696 E= 1.6e+002 -982 -982 198 -982 -982 -982 198 -982 -982 -982 198 -982 95 -126 81 -982 -5 132 -982 -117 -982 -982 -982 200 -982 -982 -982 200 -982 -982 -982 200 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGRCTTT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 1.6e+002 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.444444 0.111111 0.444444 0.000000 0.222222 0.666667 0.000000 0.111111 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGRCTTT MEME-2 regular expression -------------------------------------------------------------------------------- GGG[AG][CA]TTT -------------------------------------------------------------------------------- Time 2.89 secs. ******************************************************************************** ******************************************************************************** MOTIF MCCTGCAG MEME-3 width = 8 sites = 14 llr = 115 E-value = 3.5e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif MCCTGCAG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 31::::91 pos.-specific C 67a:1a:1 probability G ::::9::9 matrix T 12:a::1: bits 2.1 1.9 ** * 1.7 ***** 1.5 ***** Relative 1.3 ****** Entropy 1.1 ****** (11.9 bits) 0.8 ******* 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCCTGCAG consensus AT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCCTGCAG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr17:7036232-7036252 6 1.86e-05 TGACA CCCTGCAG GTTTCTA chrX:9979520-9979540 10 1.86e-05 ACTCCTTCG CCCTGCAG TGT chr2:8666143-8666163 9 3.46e-05 CAGCTCAC ACCTGCAG GGAC chr11:118938532-11893855 13 3.46e-05 ATGGCGGCCT ACCTGCAG chrX:48796110-48796130 1 3.46e-05 . ACCTGCAG AGGTAGGGGA chr21:39004158-39004178 3 5.21e-05 tg ctctgcag tgcagcggtg chr18:28848206-28848226 8 5.21e-05 tccttct ctctGCAG TTTCT chr9:139796995-139797015 6 6.95e-05 CGCGG TCCTGCAG GCACGCA chr1:1624307-1624327 1 1.01e-04 . CACTGCAG GCCGACGGGG chr10:29948155-29948175 12 1.18e-04 AAGGCTCCAG CCCTGCAA T chr8:28862262-28862282 13 1.53e-04 TGACGTTTTC TTCTGCAG chr17:80551009-80551029 8 1.53e-04 AAGGTCT CCCTGCAC CGGGC chr11:117049412-11704943 9 1.93e-04 GCCAGCAG CCCTGCTG TTTA chr12:6772201-6772221 11 2.55e-04 CCCGACCCCC ACCTCCAG CC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCCTGCAG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:7036232-7036252 1.9e-05 5_[+3]_7 chrX:9979520-9979540 1.9e-05 9_[+3]_3 chr2:8666143-8666163 3.5e-05 8_[+3]_4 chr11:118938532-11893855 3.5e-05 12_[+3] chrX:48796110-48796130 3.5e-05 [+3]_12 chr21:39004158-39004178 5.2e-05 2_[+3]_10 chr18:28848206-28848226 5.2e-05 7_[+3]_5 chr9:139796995-139797015 7e-05 5_[+3]_7 chr1:1624307-1624327 0.0001 [+3]_12 chr10:29948155-29948175 0.00012 11_[+3]_1 chr8:28862262-28862282 0.00015 12_[+3] chr17:80551009-80551029 0.00015 7_[+3]_5 chr11:117049412-11704943 0.00019 8_[+3]_4 chr12:6772201-6772221 0.00026 10_[+3]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCCTGCAG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MCCTGCAG width=8 seqs=14 chr17:7036232-7036252 ( 6) CCCTGCAG 1 chrX:9979520-9979540 ( 10) CCCTGCAG 1 chr2:8666143-8666163 ( 9) ACCTGCAG 1 chr11:118938532-11893855 ( 13) ACCTGCAG 1 chrX:48796110-48796130 ( 1) ACCTGCAG 1 chr21:39004158-39004178 ( 3) CTCTGCAG 1 chr18:28848206-28848226 ( 8) CTCTGCAG 1 chr9:139796995-139797015 ( 6) TCCTGCAG 1 chr1:1624307-1624327 ( 1) CACTGCAG 1 chr10:29948155-29948175 ( 12) CCCTGCAA 1 chr8:28862262-28862282 ( 13) TTCTGCAG 1 chr17:80551009-80551029 ( 8) CCCTGCAC 1 chr11:117049412-11704943 ( 9) CCCTGCTG 1 chr12:6772201-6772221 ( 11) ACCTCCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCCTGCAG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.4605 E= 3.5e+001 31 110 -1045 -81 -168 142 -1045 -22 -1045 191 -1045 -1045 -1045 -1045 -1045 200 -1045 -190 187 -1045 -1045 191 -1045 -1045 201 -1045 -1045 -181 -168 -190 176 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCCTGCAG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 3.5e+001 0.285714 0.571429 0.000000 0.142857 0.071429 0.714286 0.000000 0.214286 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.071429 0.928571 0.000000 0.000000 1.000000 0.000000 0.000000 0.928571 0.000000 0.000000 0.071429 0.071429 0.071429 0.857143 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCCTGCAG MEME-3 regular expression -------------------------------------------------------------------------------- [CA][CT]CTGCAG -------------------------------------------------------------------------------- Time 4.19 secs. ******************************************************************************** ******************************************************************************** MOTIF GSMAAAAT MEME-4 width = 8 sites = 8 llr = 73 E-value = 7.6e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSMAAAAT MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::4aaaa3 pos.-specific C :46::::: probability G a6:::::1 matrix T :::::::6 bits 2.1 **** 1.9 * **** 1.7 * **** 1.5 * **** Relative 1.3 * **** Entropy 1.1 ******* (13.2 bits) 0.8 ******* 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGCAAAAT consensus CA A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSMAAAAT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:9965799-9965819 5 1.20e-05 ggag ggcaaaat ggagagac chr1:205449923-205449943 7 1.20e-05 aaactt ggcaaaat gtgtga chr12:14374106-14374126 10 3.50e-05 TTCCCCTAA GCCAAAAT GAG chr19:49141153-49141173 8 3.50e-05 GCAGGAA GCCAAAAT ACCGA chr1:155827124-155827144 11 4.60e-05 GTCAGTTATT GGCAAAAA AA chr2:38265291-38265311 11 5.69e-05 ATTTCAGCCA GCAAAAAT CT chr3:127309658-127309678 5 6.64e-05 TGGG GGAAAAAA AAAAAAAA chr15:75628385-75628405 9 1.11e-04 GCGGGACC GGAAAAAG AAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSMAAAAT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:9965799-9965819 1.2e-05 4_[+4]_8 chr1:205449923-205449943 1.2e-05 6_[+4]_6 chr12:14374106-14374126 3.5e-05 9_[+4]_3 chr19:49141153-49141173 3.5e-05 7_[+4]_5 chr1:155827124-155827144 4.6e-05 10_[+4]_2 chr2:38265291-38265311 5.7e-05 10_[+4]_2 chr3:127309658-127309678 6.6e-05 4_[+4]_8 chr15:75628385-75628405 0.00011 8_[+4]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSMAAAAT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSMAAAAT width=8 seqs=8 chrX:9965799-9965819 ( 5) GGCAAAAT 1 chr1:205449923-205449943 ( 7) GGCAAAAT 1 chr12:14374106-14374126 ( 10) GCCAAAAT 1 chr19:49141153-49141173 ( 8) GCCAAAAT 1 chr1:155827124-155827144 ( 11) GGCAAAAA 1 chr2:38265291-38265311 ( 11) GCAAAAAT 1 chr3:127309658-127309678 ( 5) GGAAAAAA 1 chr15:75628385-75628405 ( 9) GGAAAAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSMAAAAT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.40106 E= 7.6e+002 -965 -965 198 -965 -965 49 130 -965 71 123 -965 -965 212 -965 -965 -965 212 -965 -965 -965 212 -965 -965 -965 212 -965 -965 -965 12 -965 -102 132 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSMAAAAT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 7.6e+002 0.000000 0.000000 1.000000 0.000000 0.000000 0.375000 0.625000 0.000000 0.375000 0.625000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.000000 0.125000 0.625000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSMAAAAT MEME-4 regular expression -------------------------------------------------------------------------------- G[GC][CA]AAAA[TA] -------------------------------------------------------------------------------- Time 5.46 secs. ******************************************************************************** ******************************************************************************** MOTIF TTCCCCWW MEME-5 width = 8 sites = 11 llr = 94 E-value = 1.8e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTCCCCWW MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::::66 pos.-specific C 3:aa8a:: probability G :::::::: matrix T 7a::2:44 bits 2.1 1.9 *** * 1.7 *** * 1.5 *** * Relative 1.3 ***** Entropy 1.1 ******** (12.4 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTCCCCAA consensus C TT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCCCCWW MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr16:21732614-21732634 13 1.66e-05 AAAGTAAAAT TTCCCCAA chr1:28189667-28189687 4 1.66e-05 CTC TTCCCCAA AGAGCAAAC chr12:14374106-14374126 1 5.25e-05 . TTCCCCTA AGCCAAAATG chr12:111351419-11135143 1 5.25e-05 . ttccccat ctgtaaactg chr1:93443298-93443318 6 5.25e-05 ccaac ttccccat gggggtg chr17:38210593-38210613 1 7.01e-05 . CTCCCCAA ATTTAAGCCT chr1:16693876-16693896 12 7.01e-05 GGAGATAGTT CTCCCCAA G chr12:7342126-7342146 8 8.97e-05 GGTGCTC TTCCCCTT TAAGA chr22:18484519-18484539 8 1.05e-04 TGGTACA TTCCTCAA AGCCC chr1:2509958-2509978 8 1.44e-04 TCTCAGC CTCCCCTA AGCAA chr1:99154023-99154043 3 2.33e-04 AC TTCCTCTT TGTGAAAACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCCCCWW MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:21732614-21732634 1.7e-05 12_[+5] chr1:28189667-28189687 1.7e-05 3_[+5]_9 chr12:14374106-14374126 5.3e-05 [+5]_12 chr12:111351419-11135143 5.3e-05 [+5]_12 chr1:93443298-93443318 5.3e-05 5_[+5]_7 chr17:38210593-38210613 7e-05 [+5]_12 chr1:16693876-16693896 7e-05 11_[+5]_1 chr12:7342126-7342146 9e-05 7_[+5]_5 chr22:18484519-18484539 0.00011 7_[+5]_5 chr1:2509958-2509978 0.00014 7_[+5]_5 chr1:99154023-99154043 0.00023 2_[+5]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCCCCWW MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTCCCCWW width=8 seqs=11 chr16:21732614-21732634 ( 13) TTCCCCAA 1 chr1:28189667-28189687 ( 4) TTCCCCAA 1 chr12:14374106-14374126 ( 1) TTCCCCTA 1 chr12:111351419-11135143 ( 1) TTCCCCAT 1 chr1:93443298-93443318 ( 6) TTCCCCAT 1 chr17:38210593-38210613 ( 1) CTCCCCAA 1 chr1:16693876-16693896 ( 12) CTCCCCAA 1 chr12:7342126-7342146 ( 8) TTCCCCTT 1 chr22:18484519-18484539 ( 8) TTCCTCAA 1 chr1:2509958-2509978 ( 8) CTCCCCTA 1 chr1:99154023-99154043 ( 3) TTCCTCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCCCCWW MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.75266 E= 1.8e+003 -1010 3 -1010 154 -1010 -1010 -1010 200 -1010 191 -1010 -1010 -1010 191 -1010 -1010 -1010 162 -1010 -46 -1010 191 -1010 -1010 147 -1010 -1010 54 147 -1010 -1010 54 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCCCCWW MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 1.8e+003 0.000000 0.272727 0.000000 0.727273 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.818182 0.000000 0.181818 0.000000 1.000000 0.000000 0.000000 0.636364 0.000000 0.000000 0.363636 0.636364 0.000000 0.000000 0.363636 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCCCCWW MEME-5 regular expression -------------------------------------------------------------------------------- [TC]TCCCC[AT][AT] -------------------------------------------------------------------------------- Time 6.91 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:99154023-99154043 2.53e-02 20 chr10:106098397-10609841 9.79e-01 20 chr17:80551009-80551029 4.05e-02 20 chr11:64795145-64795165 9.15e-01 20 chr16:30670158-30670178 5.21e-01 20 chr11:2959972-2959992 5.67e-01 20 chr8:24245212-24245232 3.02e-03 5_[+1(9.10e-05)]_7 chr3:127309658-127309678 1.17e-01 4_[+4(6.64e-05)]_8 chr3:79068751-79068771 9.14e-02 20 chr9:132772929-132772949 6.47e-01 20 chr3:119419555-119419575 7.84e-02 20 chr12:82349544-82349564 7.59e-02 20 chr12:121476935-12147695 1.91e-01 20 chr2:242067251-242067271 9.22e-01 20 chr8:120660765-120660785 4.01e-01 20 chr1:205449923-205449943 1.12e-02 6_[+4(1.20e-05)]_6 chr10:125919670-12591969 7.97e-01 20 chr11:117049412-11704943 2.75e-02 20 chr4:90948890-90948910 5.91e-01 20 chr9:38319168-38319188 1.05e-01 20 chr16:2560073-2560093 1.06e-01 20 chr12:11718823-11718843 5.77e-01 20 chr3:49131794-49131814 8.86e-01 20 chr21:34696176-34696196 6.26e-01 20 chrX:129300155-129300175 4.39e-01 20 chr19:55988494-55988514 9.20e-01 20 chr14:92724910-92724930 1.45e-02 20 chr10:67261128-67261148 7.91e-01 20 chr17:76313131-76313151 2.34e-01 20 chr1:27018862-27018882 2.84e-01 20 chr19:49141153-49141173 2.21e-02 7_[+4(3.50e-05)]_5 chr17:40346542-40346562 9.85e-01 20 chr1:54355537-54355557 4.10e-01 20 chr19:56159340-56159360 7.87e-01 20 chr9:16459346-16459366 6.59e-01 20 chr16:31084639-31084659 5.73e-01 20 chrX:9979520-9979540 1.58e-02 9_[+3(1.86e-05)]_3 chr15:93461223-93461243 3.29e-01 20 chr14:23938977-23938997 4.01e-01 20 chr1:107993771-107993791 6.73e-01 20 chr16:70488365-70488385 8.59e-01 20 chr11:10879369-10879389 8.97e-01 20 chr1:93443298-93443318 8.00e-03 5_[+5(5.25e-05)]_7 chr1:16693876-16693896 9.92e-03 11_[+5(7.01e-05)]_1 chr7:43775550-43775570 8.40e-01 20 chr22:18484519-18484539 7.18e-04 20 chr17:36105327-36105347 1.01e-01 10_[+2(3.30e-05)]_2 chr1:83953871-83953891 1.34e-01 20 chr9:139796995-139797015 6.53e-02 5_[+3(6.95e-05)]_7 chr19:41814531-41814551 1.00e-01 6_[+2(7.96e-05)]_6 chr8:8503959-8503979 3.77e-01 20 chr1:28559466-28559486 5.60e-01 20 chr18:28848206-28848226 3.04e-02 7_[+3(5.21e-05)]_5 chr5:151129344-151129364 9.53e-01 20 chr12:7342126-7342146 1.46e-02 7_[+5(8.97e-05)]_5 chr16:27420022-27420042 6.75e-02 20 chr3:122101985-122102005 1.84e-01 20 chr3:195842852-195842872 7.24e-01 20 chr1:894524-894544 1.82e-03 7_[+1(3.00e-05)]_5 chr2:38265291-38265311 3.97e-02 10_[+4(5.69e-05)]_2 chr10:102027360-10202738 9.41e-01 20 chrX:40730821-40730841 4.17e-01 20 chr4:40579234-40579254 9.37e-01 20 chr17:7155213-7155233 8.87e-01 20 chr10:103543112-10354313 8.56e-01 20 chr11:119622501-11962252 3.03e-02 5_[+2(1.57e-05)]_7 chr11:72858885-72858905 3.93e-03 2_[+1(1.45e-05)]_10 chr14:62219467-62219487 2.06e-01 20 chrX:9971806-9971826 7.32e-01 20 chr6:12119530-12119550 2.52e-01 20 chr6:84480812-84480832 2.16e-01 20 chr1:28189667-28189687 2.62e-03 3_[+5(1.66e-05)]_9 chr17:73074809-73074829 1.09e-01 20 chr12:27430919-27430939 1.52e-02 3_[+2(1.57e-05)]_9 chr7:128116865-128116885 7.85e-01 20 chr6:166749485-166749505 3.96e-01 20 chr17:27182078-27182098 7.10e-01 20 chr2:61244784-61244804 9.97e-01 20 chr16:21732614-21732634 7.56e-05 12_[+5(1.66e-05)] chr14:71067292-71067312 8.95e-01 20 chr1:154973399-154973419 2.55e-01 20 chr19:13001852-13001872 5.43e-01 20 chr10:35379526-35379546 7.95e-02 20 chr17:2126573-2126593 4.08e-01 20 chr11:47198333-47198353 7.21e-01 20 chr2:113599078-113599098 4.36e-02 20 chr1:110026866-110026886 8.48e-01 20 chr10:54725954-54725974 5.31e-01 20 chr2:131862617-131862637 1.77e-01 20 chr19:44294893-44294913 3.40e-01 20 chr9:30075777-30075797 8.32e-04 [+1(1.45e-05)]_12 chr1:19278598-19278618 5.91e-01 20 chr3:50359053-50359073 3.39e-01 20 chr8:28862262-28862282 4.80e-02 20 chr2:95729076-95729096 2.08e-01 20 chr13:107026467-10702648 1.32e-02 9_[+1(1.45e-05)]_3 chr2:113465974-113465994 1.68e-01 20 chr6:13383997-13384017 4.88e-02 20 chr6:30785206-30785226 1.96e-01 20 chr17:33288620-33288640 8.04e-01 20 chr4:113656750-113656770 2.63e-01 20 chr15:68325209-68325229 3.14e-01 20 chr12:65019347-65019367 1.51e-02 20 chr1:110069991-110070011 9.52e-01 20 chr16:86022595-86022615 6.30e-01 20 chr10:46222598-46222618 2.88e-01 20 chr16:30670365-30670385 9.48e-01 20 chr17:73663452-73663472 5.90e-01 20 chr17:62340831-62340851 9.85e-01 20 chr6:37530071-37530091 4.81e-01 20 chr1:11990039-11990059 3.68e-01 20 chr17:2305063-2305083 5.74e-01 20 chr2:160751936-160751956 5.21e-02 20 chr15:75628385-75628405 7.47e-02 20 chr11:62648152-62648172 8.36e-02 20 chr1:160174425-160174445 7.57e-03 3_[+1(1.45e-05)]_9 chr6:33285657-33285677 3.81e-01 20 chr1:166139513-166139533 5.22e-01 20 chr19:925533-925553 9.44e-01 20 chr14:55878495-55878515 2.87e-01 20 chr19:45225657-45225677 1.88e-01 20 chr4:26322326-26322346 7.78e-02 20 chr7:30066450-30066470 4.20e-01 20 chr9:80507178-80507198 1.03e-01 20 chr3:117205986-117206006 3.34e-01 20 chr1:1624307-1624327 1.41e-01 20 chr17:7036232-7036252 1.85e-02 5_[+3(1.86e-05)]_7 chr10:29948155-29948175 4.14e-02 20 chr16:88703757-88703777 4.37e-01 20 chr5:138514215-138514235 1.76e-03 3_[+1(5.96e-05)]_9 chr2:225906167-225906187 9.99e-01 20 chr4:79372829-79372849 6.02e-01 20 chr11:71673793-71673813 9.98e-01 20 chr20:2083142-2083162 4.60e-01 20 chr7:123464665-123464685 1.23e-01 20 chrX:47880882-47880902 4.70e-01 20 chr19:35739333-35739353 5.38e-01 20 chr8:146277969-146277989 5.06e-01 20 chr2:228276302-228276322 1.25e-01 20 chr7:73699228-73699248 6.69e-03 5_[+1(9.10e-05)]_7 chr11:60719860-60719880 9.35e-01 20 chr19:44258131-44258151 2.55e-02 20 chr5:156347613-156347633 4.94e-01 20 chr16:18938029-18938049 7.83e-01 20 chr2:226141091-226141111 5.28e-01 20 chr12:111351419-11135143 1.11e-02 [+5(5.25e-05)]_12 chr1:2509958-2509978 3.53e-02 20 chr3:32726431-32726451 7.43e-01 20 chr12:57024217-57024237 7.72e-01 20 chr16:31276868-31276888 1.45e-03 2_[+2(1.57e-05)]_10 chr16:30969096-30969116 9.95e-01 20 chr19:56154940-56154960 8.10e-01 20 chr12:89919927-89919947 8.50e-01 20 chr12:125919710-12591973 8.74e-01 20 chr7:37805654-37805674 8.71e-02 20 chr11:26629670-26629690 9.96e-01 20 chr12:12178230-12178250 2.57e-02 11_[+2(3.30e-05)]_1 chr12:27863827-27863847 4.52e-02 20 chr19:12848294-12848314 9.93e-01 20 chr5:137548944-137548964 3.28e-01 20 chr15:79231386-79231406 7.56e-01 20 chr8:66546639-66546659 5.03e-01 20 chr7:102066464-102066484 8.94e-01 20 chr14:68699496-68699516 8.22e-02 20 chr12:118674980-11867500 9.46e-01 20 chr1:144908446-144908466 3.54e-01 20 chr6:36618846-36618866 9.43e-01 20 chr2:114341589-114341609 1.00e+00 20 chr10:94661915-94661935 8.45e-01 20 chr7:122830395-122830415 8.94e-03 3_[+2(6.15e-05)]_9 chr9:114707641-114707661 6.66e-03 [+1(1.45e-05)]_12 chr9:110514236-110514256 3.35e-01 20 chr12:123011814-12301183 4.46e-01 20 chr17:67112286-67112306 2.09e-01 20 chr11:72525219-72525239 6.62e-01 20 chr12:95076664-95076684 7.26e-03 20 chr12:14538104-14538124 9.03e-01 20 chr15:79269724-79269744 8.45e-01 20 chr9:137000969-137000989 5.28e-01 20 chr9:86323029-86323049 5.76e-01 20 chr7:87556132-87556152 5.19e-01 20 chr14:94812791-94812811 2.55e-02 20 chr14:74551702-74551722 9.07e-01 20 chr2:163175425-163175445 5.73e-01 20 chr17:17140924-17140944 3.60e-01 20 chr8:59508664-59508684 2.50e-01 20 chr12:14374106-14374126 1.23e-04 [+5(5.25e-05)]_1_[+4(3.50e-05)]_3 chr17:78518684-78518704 2.75e-01 20 chr9:92517506-92517526 9.70e-01 20 chr9:2087180-2087200 9.63e-01 20 chr17:47753917-47753937 7.54e-01 20 chr2:74347576-74347596 7.27e-01 20 chr5:137673675-137673695 3.80e-01 20 chrX:48796110-48796130 7.93e-02 [+3(3.46e-05)]_12 chr20:18447915-18447935 5.51e-02 20 chr7:44790714-44790734 5.44e-01 20 chr12:127257150-12725717 8.48e-05 7_[+1(1.45e-05)]_5 chr20:60982563-60982583 5.84e-01 20 chr9:131133727-131133747 9.85e-01 20 chr11:8553675-8553695 2.29e-01 20 chr2:153574738-153574758 9.35e-01 20 chr1:155057436-155057456 9.39e-01 20 chr19:4791741-4791761 6.30e-01 20 chr16:50775823-50775843 9.32e-01 20 chr9:19451814-19451834 1.89e-01 20 chr11:75479516-75479536 9.70e-01 20 chr10:51827618-51827638 7.78e-01 20 chr19:42758441-42758461 9.98e-01 20 chr11:118938532-11893855 2.92e-02 12_[+3(3.46e-05)] chr2:74710289-74710309 9.34e-01 20 chr1:154974793-154974813 5.15e-01 20 chr2:8666143-8666163 4.88e-02 8_[+3(3.46e-05)]_4 chr21:39004158-39004178 5.86e-02 2_[+3(5.21e-05)]_10 chr2:70331896-70331916 5.09e-01 20 chr1:154244957-154244977 4.37e-01 20 chr16:31886026-31886046 4.22e-01 20 chr4:152682079-152682099 1.35e-02 20 chr1:200860507-200860527 6.05e-01 20 chr2:24732402-24732422 2.04e-01 20 chr9:112178619-112178639 7.90e-01 20 chr19:46145779-46145799 4.36e-03 5_[+1(9.10e-05)]_7 chr16:5083899-5083919 1.81e-01 20 chr12:96965259-96965279 3.27e-01 20 chr8:102778123-102778143 7.69e-01 20 chr19:17378323-17378343 9.37e-01 20 chr17:17140712-17140732 5.35e-01 20 chr17:26684731-26684751 8.88e-01 20 chr7:100472360-100472380 5.64e-02 20 chr14:99947821-99947841 9.43e-01 20 chr17:30007268-30007288 5.09e-02 3_[+2(4.65e-05)]_9 chr3:16551778-16551798 4.97e-01 20 chr11:61524222-61524242 5.07e-01 20 chr3:52188639-52188659 9.69e-01 20 chr11:120528978-12052899 1.66e-01 20 chr1:151253955-151253975 5.54e-01 20 chr14:92588150-92588170 9.85e-01 20 chr1:33458327-33458347 6.97e-01 20 chr12:132195631-13219565 9.61e-01 20 chr17:38210593-38210613 3.79e-03 [+5(7.01e-05)]_12 chrX:9965799-9965819 1.87e-02 4_[+4(1.20e-05)]_8 chr1:155827124-155827144 5.43e-02 10_[+4(4.60e-05)]_2 chr9:87374403-87374423 2.69e-01 20 chr7:92158156-92158176 8.23e-01 20 chr12:6772201-6772221 7.48e-02 20 chr11:43665839-43665859 7.94e-01 20 chr2:20776705-20776725 4.87e-01 20 chr7:26196154-26196174 4.41e-01 20 chr2:198870137-198870157 3.00e-02 20 chr12:114404049-11440406 6.95e-01 20 chr3:101546583-101546603 6.65e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n04.farnam.hpc.yale.internal ********************************************************************************