******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/RCOR1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr10:106584352-10658437 1.0000 20 chr11:46143417-46143437 1.0000 20 chrX:153140973-153140993 1.0000 20 chr15:75287794-75287814 1.0000 20 chr10:135186908-13518692 1.0000 20 chr9:128845150-128845170 1.0000 20 chr16:90089016-90089036 1.0000 20 chr18:34850198-34850218 1.0000 20 chr5:151304284-151304304 1.0000 20 chr1:35390598-35390618 1.0000 20 chr15:74583986-74584006 1.0000 20 chr6:69942931-69942951 1.0000 20 chr1:159147276-159147296 1.0000 20 chr11:70496595-70496615 1.0000 20 chr3:160117032-160117052 1.0000 20 chr9:123605264-123605284 1.0000 20 chr1:207226333-207226353 1.0000 20 chr20:10200283-10200303 1.0000 20 chr16:30412019-30412039 1.0000 20 chr5:139493620-139493640 1.0000 20 chr16:87985069-87985089 1.0000 20 chr20:36255556-36255576 1.0000 20 chr10:124671591-12467161 1.0000 20 chr12:11653686-11653706 1.0000 20 chr12:49351326-49351346 1.0000 20 chr10:75118536-75118556 1.0000 20 chr1:232941105-232941125 1.0000 20 chr14:106267689-10626770 1.0000 20 chr19:55166499-55166519 1.0000 20 chr6:1665657-1665677 1.0000 20 chr3:42109001-42109021 1.0000 20 chr1:176147048-176147068 1.0000 20 chr5:176264777-176264797 1.0000 20 chr10:51565135-51565155 1.0000 20 chr9:126872774-126872794 1.0000 20 chr11:13484841-13484861 1.0000 20 chr2:242295507-242295527 1.0000 20 chr17:74449380-74449400 1.0000 20 chr14:36004560-36004580 1.0000 20 chr1:21985805-21985825 1.0000 20 chr19:52408312-52408332 1.0000 20 chr17:7760908-7760928 1.0000 20 chr6:151711696-151711716 1.0000 20 chr1:54873364-54873384 1.0000 20 chr10:31608462-31608482 1.0000 20 chr16:84150456-84150476 1.0000 20 chr3:56528889-56528909 1.0000 20 chr12:58134982-58135002 1.0000 20 chr19:52511494-52511514 1.0000 20 chr12:27091355-27091375 1.0000 20 chr2:225450225-225450245 1.0000 20 chr1:53833925-53833945 1.0000 20 chr22:40446424-40446444 1.0000 20 chr1:207224384-207224404 1.0000 20 chr7:107279161-107279181 1.0000 20 chrX:153236510-153236530 1.0000 20 chr1:6305283-6305303 1.0000 20 chr1:26735193-26735213 1.0000 20 chr2:223777071-223777091 1.0000 20 chr19:37341696-37341716 1.0000 20 chr9:135457572-135457592 1.0000 20 chr12:90102616-90102636 1.0000 20 chr8:10847827-10847847 1.0000 20 chr5:63259098-63259118 1.0000 20 chr5:81047248-81047268 1.0000 20 chr17:40118680-40118700 1.0000 20 chr5:169010748-169010768 1.0000 20 chr17:4167292-4167312 1.0000 20 chr14:100705128-10070514 1.0000 20 chr17:53046075-53046095 1.0000 20 chr9:74164136-74164156 1.0000 20 chr12:2861977-2861997 1.0000 20 chr8:42249122-42249142 1.0000 20 chr1:155829332-155829352 1.0000 20 chr20:30556381-30556401 1.0000 20 chr19:12943373-12943393 1.0000 20 chr7:90893717-90893737 1.0000 20 chr17:16472622-16472642 1.0000 20 chr19:597743-597763 1.0000 20 chr1:12138821-12138841 1.0000 20 chr4:15683251-15683271 1.0000 20 chr22:42793454-42793474 1.0000 20 chr20:25604742-25604762 1.0000 20 chr3:134521993-134522013 1.0000 20 chr19:46172236-46172256 1.0000 20 chr11:61334842-61334862 1.0000 20 chr19:52430599-52430619 1.0000 20 chr17:56416008-56416028 1.0000 20 chr2:136743193-136743213 1.0000 20 chr19:4124169-4124189 1.0000 20 chr9:95640435-95640455 1.0000 20 chr4:140374888-140374908 1.0000 20 chr16:87811586-87811606 1.0000 20 chr20:35012599-35012619 1.0000 20 chr17:27717293-27717313 1.0000 20 chr7:158497495-158497515 1.0000 20 chr5:176449668-176449688 1.0000 20 chr1:53308504-53308524 1.0000 20 chr3:49131534-49131554 1.0000 20 chr6:5507452-5507472 1.0000 20 chr17:55162389-55162409 1.0000 20 chr18:47340182-47340202 1.0000 20 chr19:50379980-50380000 1.0000 20 chr4:79583426-79583446 1.0000 20 chr17:2653230-2653250 1.0000 20 chr10:7830033-7830053 1.0000 20 chr6:44355262-44355282 1.0000 20 chr4:6548497-6548517 1.0000 20 chr6:116601103-116601123 1.0000 20 chr15:66649023-66649043 1.0000 20 chr2:170683928-170683948 1.0000 20 chr3:194304650-194304670 1.0000 20 chr2:176032935-176032955 1.0000 20 chr17:37607574-37607594 1.0000 20 chr19:42705937-42705957 1.0000 20 chr2:206511563-206511583 1.0000 20 chr16:47557394-47557414 1.0000 20 chr12:57940990-57941010 1.0000 20 chr6:97731178-97731198 1.0000 20 chr22:28315875-28315895 1.0000 20 chr5:175298895-175298915 1.0000 20 chr6:143832508-143832528 1.0000 20 chr17:70511939-70511959 1.0000 20 chr5:158854692-158854712 1.0000 20 chr9:88555920-88555940 1.0000 20 chr12:117296030-11729605 1.0000 20 chr2:219773800-219773820 1.0000 20 chr7:154861821-154861841 1.0000 20 chr8:144911542-144911562 1.0000 20 chr4:26322596-26322616 1.0000 20 chr7:5437140-5437160 1.0000 20 chr11:77899495-77899515 1.0000 20 chr7:7291593-7291613 1.0000 20 chr8:38089085-38089105 1.0000 20 chr16:29911386-29911406 1.0000 20 chr15:85197536-85197556 1.0000 20 chr3:67164410-67164430 1.0000 20 chr19:50490550-50490570 1.0000 20 chr15:38962961-38962981 1.0000 20 chr9:98637882-98637902 1.0000 20 chr10:102820520-10282054 1.0000 20 chr16:20885985-20886005 1.0000 20 chr7:102036650-102036670 1.0000 20 chr3:48699283-48699303 1.0000 20 chr2:113540248-113540268 1.0000 20 chr13:21750741-21750761 1.0000 20 chr9:133002141-133002161 1.0000 20 chr17:4843569-4843589 1.0000 20 chr15:33200852-33200872 1.0000 20 chr7:1980162-1980182 1.0000 20 chr6:146285596-146285616 1.0000 20 chr6:71122933-71122953 1.0000 20 chr1:167905804-167905824 1.0000 20 chr6:3027425-3027445 1.0000 20 chr2:120517289-120517309 1.0000 20 chr6:28863402-28863422 1.0000 20 chr6:33168637-33168657 1.0000 20 chr15:78730471-78730491 1.0000 20 chr12:11324268-11324288 1.0000 20 chr12:29534169-29534189 1.0000 20 chr3:128444846-128444866 1.0000 20 chrX:12996195-12996215 1.0000 20 chr19:4769698-4769718 1.0000 20 chr1:111991953-111991973 1.0000 20 chr4:17812534-17812554 1.0000 20 chr10:50970479-50970499 1.0000 20 chr19:40502609-40502629 1.0000 20 chr19:37663716-37663736 1.0000 20 chr15:22833406-22833426 1.0000 20 chr2:219264447-219264467 1.0000 20 chr1:98513954-98513974 1.0000 20 chr5:138940736-138940756 1.0000 20 chr14:62547929-62547949 1.0000 20 chr1:78444873-78444893 1.0000 20 chr12:30848890-30848910 1.0000 20 chr15:80189038-80189058 1.0000 20 chr2:160568953-160568973 1.0000 20 chr17:4852782-4852802 1.0000 20 chr18:20512974-20512994 1.0000 20 chr5:56469893-56469913 1.0000 20 chr17:38708920-38708940 1.0000 20 chr5:58423559-58423579 1.0000 20 chrX:13752750-13752770 1.0000 20 chr1:249120312-249120332 1.0000 20 chr22:50050629-50050649 1.0000 20 chr15:69452888-69452908 1.0000 20 chr22:30683844-30683864 1.0000 20 chr1:104068547-104068567 1.0000 20 chr15:76474107-76474127 1.0000 20 chr10:90639927-90639947 1.0000 20 chr12:96883253-96883273 1.0000 20 chr8:70730610-70730630 1.0000 20 chr6:157390066-157390086 1.0000 20 chr19:52111398-52111418 1.0000 20 chr7:69703258-69703278 1.0000 20 chr8:101464474-101464494 1.0000 20 chr20:10415838-10415858 1.0000 20 chr16:49192156-49192176 1.0000 20 chr3:157816045-157816065 1.0000 20 chr9:6413147-6413167 1.0000 20 chr11:9336143-9336163 1.0000 20 chr3:39297019-39297039 1.0000 20 chr4:103749205-103749225 1.0000 20 chr11:119039318-11903933 1.0000 20 chr2:196521858-196521878 1.0000 20 chr17:2415226-2415246 1.0000 20 chr3:142315118-142315138 1.0000 20 chr1:70820451-70820471 1.0000 20 chr1:78148388-78148408 1.0000 20 chr6:52285019-52285039 1.0000 20 chr5:175224018-175224038 1.0000 20 chr11:66057121-66057141 1.0000 20 chr1:54842307-54842327 1.0000 20 chrX:77154867-77154887 1.0000 20 chr10:101989360-10198938 1.0000 20 chr8:134581016-134581036 1.0000 20 chr5:74964970-74964990 1.0000 20 chr8:29413393-29413413 1.0000 20 chr9:114660319-114660339 1.0000 20 chr3:169684531-169684551 1.0000 20 chr18:47814318-47814338 1.0000 20 chr19:18668387-18668407 1.0000 20 chr15:76603810-76603830 1.0000 20 chrX:63615404-63615424 1.0000 20 chr6:35995464-35995484 1.0000 20 chr1:19923458-19923478 1.0000 20 chrX:53711225-53711245 1.0000 20 chr2:231091145-231091165 1.0000 20 chr13:53542383-53542403 1.0000 20 chr10:69609233-69609253 1.0000 20 chr9:125937358-125937378 1.0000 20 chr12:129308556-12930857 1.0000 20 chr1:200988808-200988828 1.0000 20 chr16:67219422-67219442 1.0000 20 chr16:83841575-83841595 1.0000 20 chr7:24330073-24330093 1.0000 20 chr16:3018965-3018985 1.0000 20 chr5:137688199-137688219 1.0000 20 chr15:64279143-64279163 1.0000 20 chr5:175788809-175788829 1.0000 20 chr15:73925755-73925775 1.0000 20 chr2:11884252-11884272 1.0000 20 chr13:31736566-31736586 1.0000 20 chr5:132387643-132387663 1.0000 20 chr15:48470542-48470562 1.0000 20 chr3:197461664-197461684 1.0000 20 chr1:3817244-3817264 1.0000 20 chr2:96873614-96873634 1.0000 20 chr12:125473658-12547367 1.0000 20 chr3:139108515-139108535 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_RCOR1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/RCOR1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.206 C 0.299 G 0.297 T 0.198 Background letter frequencies (from file dataset with add-one prior applied): A 0.206 C 0.299 G 0.297 T 0.198 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TCGCGMGA MEME-1 width = 8 sites = 28 llr = 245 E-value = 4.6e-023 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCGCGMGA MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::5:a pos.-specific C :a1a:4:: probability G ::7:a1a: matrix T a:2::::: bits 2.3 * * 2.1 * * 1.9 * * 1.6 ** ** ** Relative 1.4 ** ** ** Entropy 1.2 ** ** ** (12.6 bits) 0.9 ** ** ** 0.7 ***** ** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TCGCGAGA consensus T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGCGMGA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:129308556-12930857 1 1.97e-05 . TCGCGAGA CTGCCGGGCC chr10:69609233-69609253 2 1.97e-05 A TCGCGAGA ACGGCGCCAC chr1:19923458-19923478 13 1.97e-05 TTTCCAGCTC TCGCGAGA chr15:76603810-76603830 3 1.97e-05 GC TCGCGAGA CGCGCGAACG chr10:101989360-10198938 12 1.97e-05 GTCTTTGTTC TCGCGAGA A chr9:6413147-6413167 2 1.97e-05 C TCGCGAGA TCCGGCTTGG chr13:21750741-21750761 1 1.97e-05 . TCGCGAGA GCCGAAGTCT chr9:98637882-98637902 1 1.97e-05 . TCGCGAGA TCCCAATGAC chr2:219773800-219773820 2 1.97e-05 A TCGCGAGA TCGGTGGGAC chr10:7830033-7830053 3 1.97e-05 GG TCGCGAGA CTCCCCTCGC chr2:136743193-136743213 3 1.97e-05 GA TCGCGAGA GCTGCGGCTA chr17:53046075-53046095 2 1.97e-05 C TCGCGAGA TCTGGGTTGA chr5:139493620-139493640 9 1.97e-05 CGCAGATC TCGCGAGA GTGG chr5:175788809-175788829 10 4.82e-05 CGCGGGATC TCGCGCGA GAC chr1:78148388-78148408 3 8.04e-05 CA TCTCGCGA GCTTCCACTA chrX:13752750-13752770 7 8.04e-05 ATGTGC TCTCGCGA TACGTA chr10:102820520-10282054 13 8.04e-05 CTGTTCTGAT TCTCGCGA chr17:37607574-37607594 4 8.04e-05 AAA TCTCGCGA ATATTGGTC chr15:66649023-66649043 10 8.04e-05 AAGCGCGCT TCTCGCGA TAC chr10:51565135-51565155 12 8.04e-05 CGAGCGGAGA TCTCGCGA G chrX:77154867-77154887 6 1.09e-04 TTTCC TCGCGGGA AAAGGGA chr4:17812534-17812554 3 1.09e-04 TC TCGCGGGA TTTCCCCCTC chr6:33168637-33168657 13 1.09e-04 CTTCCTGTTC TCGCGGGA chr6:71122933-71122953 10 1.09e-04 CTCCCGTTC TCGCGGGA ACT chr3:49131534-49131554 11 1.76e-04 GGGCGTCGGA TCCCGCGA GA chr20:25604742-25604762 12 1.76e-04 AAAAGTGAGA TCCCGCGA G chr4:15683251-15683271 11 1.76e-04 GAGGCGGAAA TCCCGCGA GA chr10:75118536-75118556 9 2.10e-04 TTTGGCCA TCGCACGA GCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGCGMGA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:129308556-12930857 2e-05 [+1]_12 chr10:69609233-69609253 2e-05 1_[+1]_11 chr1:19923458-19923478 2e-05 12_[+1] chr15:76603810-76603830 2e-05 2_[+1]_10 chr10:101989360-10198938 2e-05 11_[+1]_1 chr9:6413147-6413167 2e-05 1_[+1]_11 chr13:21750741-21750761 2e-05 [+1]_12 chr9:98637882-98637902 2e-05 [+1]_12 chr2:219773800-219773820 2e-05 1_[+1]_11 chr10:7830033-7830053 2e-05 2_[+1]_10 chr2:136743193-136743213 2e-05 2_[+1]_10 chr17:53046075-53046095 2e-05 1_[+1]_11 chr5:139493620-139493640 2e-05 8_[+1]_4 chr5:175788809-175788829 4.8e-05 9_[+1]_3 chr1:78148388-78148408 8e-05 2_[+1]_10 chrX:13752750-13752770 8e-05 6_[+1]_6 chr10:102820520-10282054 8e-05 12_[+1] chr17:37607574-37607594 8e-05 3_[+1]_9 chr15:66649023-66649043 8e-05 9_[+1]_3 chr10:51565135-51565155 8e-05 11_[+1]_1 chrX:77154867-77154887 0.00011 5_[+1]_7 chr4:17812534-17812554 0.00011 2_[+1]_10 chr6:33168637-33168657 0.00011 12_[+1] chr6:71122933-71122953 0.00011 9_[+1]_3 chr3:49131534-49131554 0.00018 10_[+1]_2 chr20:25604742-25604762 0.00018 11_[+1]_1 chr4:15683251-15683271 0.00018 10_[+1]_2 chr10:75118536-75118556 0.00021 8_[+1]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGCGMGA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCGCGMGA width=8 seqs=28 chr12:129308556-12930857 ( 1) TCGCGAGA 1 chr10:69609233-69609253 ( 2) TCGCGAGA 1 chr1:19923458-19923478 ( 13) TCGCGAGA 1 chr15:76603810-76603830 ( 3) TCGCGAGA 1 chr10:101989360-10198938 ( 12) TCGCGAGA 1 chr9:6413147-6413167 ( 2) TCGCGAGA 1 chr13:21750741-21750761 ( 1) TCGCGAGA 1 chr9:98637882-98637902 ( 1) TCGCGAGA 1 chr2:219773800-219773820 ( 2) TCGCGAGA 1 chr10:7830033-7830053 ( 3) TCGCGAGA 1 chr2:136743193-136743213 ( 3) TCGCGAGA 1 chr17:53046075-53046095 ( 2) TCGCGAGA 1 chr5:139493620-139493640 ( 9) TCGCGAGA 1 chr5:175788809-175788829 ( 10) TCGCGCGA 1 chr1:78148388-78148408 ( 3) TCTCGCGA 1 chrX:13752750-13752770 ( 7) TCTCGCGA 1 chr10:102820520-10282054 ( 13) TCTCGCGA 1 chr17:37607574-37607594 ( 4) TCTCGCGA 1 chr15:66649023-66649043 ( 10) TCTCGCGA 1 chr10:51565135-51565155 ( 12) TCTCGCGA 1 chrX:77154867-77154887 ( 6) TCGCGGGA 1 chr4:17812534-17812554 ( 3) TCGCGGGA 1 chr6:33168637-33168657 ( 13) TCGCGGGA 1 chr6:71122933-71122953 ( 10) TCGCGGGA 1 chr3:49131534-49131554 ( 11) TCCCGCGA 1 chr20:25604742-25604762 ( 12) TCCCGCGA 1 chr4:15683251-15683271 ( 11) TCCCGCGA 1 chr10:75118536-75118556 ( 9) TCGCACGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGCGMGA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.4564 E= 4.6e-023 -1145 -1145 -1145 234 -1145 174 -1145 -1145 -1145 -148 119 12 -1145 174 -1145 -1145 -253 -1145 170 -1145 117 39 -105 -1145 -1145 -1145 175 -1145 228 -1145 -1145 -1145 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGCGMGA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 28 E= 4.6e-023 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.107143 0.678571 0.214286 0.000000 1.000000 0.000000 0.000000 0.035714 0.000000 0.964286 0.000000 0.464286 0.392857 0.142857 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGCGMGA MEME-1 regular expression -------------------------------------------------------------------------------- TC[GT]CG[AC]GA -------------------------------------------------------------------------------- Time 1.87 secs. ******************************************************************************** ******************************************************************************** MOTIF RGGMCAGC MEME-2 width = 8 sites = 18 llr = 140 E-value = 2.9e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif RGGMCAGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 4:171a:1 pos.-specific C 2::39::9 probability G 2a9:::a: matrix T 2::::::: bits 2.3 * 2.1 * 1.9 * 1.6 * ** Relative 1.4 ** **** Entropy 1.2 ******* (11.2 bits) 0.9 ******* 0.7 ******* 0.5 ******* 0.2 ******** 0.0 -------- Multilevel AGGACAGC consensus G C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGGMCAGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:67164410-67164430 3 2.05e-05 CT AGGACAGC GGCACACATC chr1:98513954-98513974 6 4.02e-05 ACGAA TGGACAGC TCAACCC chr5:176264777-176264797 6 4.02e-05 CACCG TGGACAGC CCCAGGC chr14:100705128-10070514 13 6.99e-05 GGGCGGGCTG AGGCCAGC chr11:13484841-13484861 7 6.99e-05 GAGGCG AGGCCAGC AGCGTT chr10:135186908-13518692 5 6.99e-05 CCAC AGGCCAGC GCCGCGAG chr1:21985805-21985825 10 9.94e-05 CCAGGACCA GGGACAGC GCC chr14:36004560-36004580 7 9.94e-05 AGGCCA GGGACAGC TCCGGG chr17:2653230-2653250 3 1.29e-04 CG CGGACAGC GCCCAGGCCG chr12:11653686-11653706 7 1.29e-04 GGACCA CGGACAGC GCTCAT chr5:151304284-151304304 7 1.29e-04 ATACCA CGGACAGC GGCGGC chr9:114660319-114660339 3 1.57e-04 gc aggacaga attcctgtcc chr22:28315875-28315895 3 1.57e-04 CC AGGAAAGC GGGCTGTTCA chr16:84150456-84150476 1 2.29e-04 . GGGCCAGC GAGGCCCACA chr6:1665657-1665677 13 2.29e-04 GGGAGGTAAT GGGCCAGC chr4:6548497-6548517 8 2.86e-04 AGCACCA AGAACAGC GACAG chr1:26735193-26735213 5 3.13e-04 ACCG TGGACAGA GCTGCTGG chr5:74964970-74964990 2 3.54e-04 C AGGCAAGC AAACAGTCAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGGMCAGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:67164410-67164430 2e-05 2_[+2]_10 chr1:98513954-98513974 4e-05 5_[+2]_7 chr5:176264777-176264797 4e-05 5_[+2]_7 chr14:100705128-10070514 7e-05 12_[+2] chr11:13484841-13484861 7e-05 6_[+2]_6 chr10:135186908-13518692 7e-05 4_[+2]_8 chr1:21985805-21985825 9.9e-05 9_[+2]_3 chr14:36004560-36004580 9.9e-05 6_[+2]_6 chr17:2653230-2653250 0.00013 2_[+2]_10 chr12:11653686-11653706 0.00013 6_[+2]_6 chr5:151304284-151304304 0.00013 6_[+2]_6 chr9:114660319-114660339 0.00016 2_[+2]_10 chr22:28315875-28315895 0.00016 2_[+2]_10 chr16:84150456-84150476 0.00023 [+2]_12 chr6:1665657-1665677 0.00023 12_[+2] chr4:6548497-6548517 0.00029 7_[+2]_5 chr1:26735193-26735213 0.00031 4_[+2]_8 chr5:74964970-74964990 0.00035 1_[+2]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGGMCAGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RGGMCAGC width=8 seqs=18 chr3:67164410-67164430 ( 3) AGGACAGC 1 chr1:98513954-98513974 ( 6) TGGACAGC 1 chr5:176264777-176264797 ( 6) TGGACAGC 1 chr14:100705128-10070514 ( 13) AGGCCAGC 1 chr11:13484841-13484861 ( 7) AGGCCAGC 1 chr10:135186908-13518692 ( 5) AGGCCAGC 1 chr1:21985805-21985825 ( 10) GGGACAGC 1 chr14:36004560-36004580 ( 7) GGGACAGC 1 chr17:2653230-2653250 ( 3) CGGACAGC 1 chr12:11653686-11653706 ( 7) CGGACAGC 1 chr5:151304284-151304304 ( 7) CGGACAGC 1 chr9:114660319-114660339 ( 3) AGGACAGA 1 chr22:28315875-28315895 ( 3) AGGAAAGC 1 chr16:84150456-84150476 ( 1) GGGCCAGC 1 chr6:1665657-1665677 ( 13) GGGCCAGC 1 chr4:6548497-6548517 ( 8) AGAACAGC 1 chr1:26735193-26735213 ( 5) TGGACAGA 1 chr5:74964970-74964990 ( 2) AGGCAAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGGMCAGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.6233 E= 2.9e+000 111 -84 -42 -25 -1081 -1081 175 -1081 -189 -1081 167 -1081 169 16 -1081 -1081 -89 157 -1081 -1081 228 -1081 -1081 -1081 -1081 -1081 175 -1081 -89 157 -1081 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGGMCAGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 2.9e+000 0.444444 0.166667 0.222222 0.166667 0.000000 0.000000 1.000000 0.000000 0.055556 0.000000 0.944444 0.000000 0.666667 0.333333 0.000000 0.000000 0.111111 0.888889 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.111111 0.888889 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGGMCAGC MEME-2 regular expression -------------------------------------------------------------------------------- [AG]GG[AC]CAGC -------------------------------------------------------------------------------- Time 5.29 secs. ******************************************************************************** ******************************************************************************** MOTIF TCAGCACC MEME-3 width = 8 sites = 6 llr = 63 E-value = 7.6e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCAGCACC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :2a::a:: pos.-specific C :8::a:aa probability G :::a:::: matrix T a::::::: bits 2.3 * * * 2.1 * * * 1.9 * * * 1.6 * ****** Relative 1.4 * ****** Entropy 1.2 ******** (15.0 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TCAGCACC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCAGCACC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr13:53542383-53542403 3 1.99e-05 TG TCAGCACC GCCGGTAGAG chr19:4769698-4769718 1 1.99e-05 . TCAGCACC GGGGCTCAGG chr20:30556381-30556401 13 1.99e-05 GGAGCCGCCA TCAGCACC chr6:69942931-69942951 5 1.99e-05 GGTT TCAGCACC TCCGGCGC chr15:74583986-74584006 6 1.99e-05 CACTT TCAGCACC AAGGACA chrX:12996195-12996215 6 3.37e-05 TTAAA TAAGCACC AGTTTTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCAGCACC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr13:53542383-53542403 2e-05 2_[+3]_10 chr19:4769698-4769718 2e-05 [+3]_12 chr20:30556381-30556401 2e-05 12_[+3] chr6:69942931-69942951 2e-05 4_[+3]_8 chr15:74583986-74584006 2e-05 5_[+3]_7 chrX:12996195-12996215 3.4e-05 5_[+3]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCAGCACC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCAGCACC width=8 seqs=6 chr13:53542383-53542403 ( 3) TCAGCACC 1 chr19:4769698-4769718 ( 1) TCAGCACC 1 chr20:30556381-30556401 ( 13) TCAGCACC 1 chr6:69942931-69942951 ( 5) TCAGCACC 1 chr15:74583986-74584006 ( 6) TCAGCACC 1 chrX:12996195-12996215 ( 6) TAAGCACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCAGCACC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.73685 E= 7.6e+001 -923 -923 -923 234 -31 148 -923 -923 227 -923 -923 -923 -923 -923 175 -923 -923 174 -923 -923 227 -923 -923 -923 -923 174 -923 -923 -923 174 -923 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCAGCACC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 7.6e+001 0.000000 0.000000 0.000000 1.000000 0.166667 0.833333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCAGCACC MEME-3 regular expression -------------------------------------------------------------------------------- TCAGCACC -------------------------------------------------------------------------------- Time 8.24 secs. ******************************************************************************** ******************************************************************************** MOTIF CTKTTCWK MEME-4 width = 8 sites = 12 llr = 100 E-value = 1.2e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTKTTCWK MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::131:3: pos.-specific C a:2::a:: probability G ::3::::7 matrix T :a589:73 bits 2.3 * 2.1 * 1.9 * * 1.6 ** ** Relative 1.4 ** **** Entropy 1.2 ** **** (12.0 bits) 0.9 ** ***** 0.7 ** ***** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTTTTCTG consensus GA AT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTKTTCWK MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:53833925-53833945 5 8.08e-06 tcct cttttctg aaccttag chr1:54842307-54842327 6 1.35e-05 CCCTC CTTTTCTT CTTCATG chr1:159147276-159147296 5 1.35e-05 CAGG CTTTTCTT GTTGCTCT chr16:29911386-29911406 10 2.19e-05 CGGAGCGCC CTTTTCAG CAC chr10:102820520-10282054 3 4.80e-05 TC CTGTTCTG ATTCTCGCGA chr15:76474107-76474127 7 7.39e-05 gatata ctcttctg actcat chr10:124671591-12467161 12 1.12e-04 GTGCCCCACT CTGTTCAG C chr5:58423559-58423579 11 1.44e-04 CAATGGCATT CTTATCAT GC chr2:96873614-96873634 9 1.65e-04 TGTTGTTT CTTTACTG TCTT chr17:4843569-4843589 5 1.83e-04 GCAA CTATTCAG CTGCGAGG chr17:2415226-2415246 7 2.04e-04 CTGTGG CTGATCTT GAAGAA chr22:30683844-30683864 3 2.04e-04 tc ctcatctg taaaatggga -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTKTTCWK MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:53833925-53833945 8.1e-06 4_[+4]_8 chr1:54842307-54842327 1.3e-05 5_[+4]_7 chr1:159147276-159147296 1.3e-05 4_[+4]_8 chr16:29911386-29911406 2.2e-05 9_[+4]_3 chr10:102820520-10282054 4.8e-05 2_[+4]_10 chr15:76474107-76474127 7.4e-05 6_[+4]_6 chr10:124671591-12467161 0.00011 11_[+4]_1 chr5:58423559-58423579 0.00014 10_[+4]_2 chr2:96873614-96873634 0.00017 8_[+4]_4 chr17:4843569-4843589 0.00018 4_[+4]_8 chr17:2415226-2415246 0.0002 6_[+4]_6 chr22:30683844-30683864 0.0002 2_[+4]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTKTTCWK MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTKTTCWK width=8 seqs=12 chr1:53833925-53833945 ( 5) CTTTTCTG 1 chr1:54842307-54842327 ( 6) CTTTTCTT 1 chr1:159147276-159147296 ( 5) CTTTTCTT 1 chr16:29911386-29911406 ( 10) CTTTTCAG 1 chr10:102820520-10282054 ( 3) CTGTTCTG 1 chr15:76474107-76474127 ( 7) CTCTTCTG 1 chr10:124671591-12467161 ( 12) CTGTTCAG 1 chr5:58423559-58423579 ( 11) CTTATCAT 1 chr2:96873614-96873634 ( 9) CTTTACTG 1 chr17:4843569-4843589 ( 5) CTATTCAG 1 chr17:2415226-2415246 ( 7) CTGATCTT 1 chr22:30683844-30683864 ( 3) CTCATCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTKTTCWK MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.66445 E= 1.2e+002 -1023 174 -1023 -1023 -1023 -1023 -1023 234 -131 -84 -25 134 28 -1023 -1023 192 -131 -1023 -1023 221 -1023 174 -1023 -1023 69 -1023 -1023 175 -1023 -1023 117 75 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTKTTCWK MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 1.2e+002 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.083333 0.166667 0.250000 0.500000 0.250000 0.000000 0.000000 0.750000 0.083333 0.000000 0.000000 0.916667 0.000000 1.000000 0.000000 0.000000 0.333333 0.000000 0.000000 0.666667 0.000000 0.000000 0.666667 0.333333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTKTTCWK MEME-4 regular expression -------------------------------------------------------------------------------- CT[TG][TA]TC[TA][GT] -------------------------------------------------------------------------------- Time 10.99 secs. ******************************************************************************** ******************************************************************************** MOTIF SRAATCTC MEME-5 width = 8 sites = 18 llr = 134 E-value = 6.7e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif SRAATCTC MEME-5 Description -------------------------------------------------------------------------------- Simplified A 1687:11: pos.-specific C 4::2:9:a probability G 4322:::: matrix T 11::a:9: bits 2.3 * 2.1 * 1.9 * * 1.6 * ** Relative 1.4 * **** Entropy 1.2 * **** (10.7 bits) 0.9 ******* 0.7 ******* 0.5 ******* 0.2 ******** 0.0 -------- Multilevel GAAATCTC consensus CGG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SRAATCTC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr5:176449668-176449688 12 1.83e-05 TACCACCCAC CAAATCTC G chr4:26322596-26322616 12 3.14e-05 GGCGTCGGGG GGAATCTC G chr17:27717293-27717313 13 3.77e-05 TGTCAGGCGG AAAATCTC chr9:125937358-125937378 3 9.64e-05 tt taaatctc accacaagcc chr15:22833406-22833426 12 9.64e-05 GCGGGAGCGC GAACTCTC G chr13:21750741-21750761 12 9.64e-05 CGCGAGAGCC GAAGTCTC T chr8:144911542-144911562 13 9.64e-05 CCGGTGCACG GAACTCTC chr12:29534169-29534189 10 1.10e-04 GACAATGTA CAGATCTC GCG chr2:225450225-225450245 13 1.10e-04 GGGGGACGCT CAGATCTC chr1:176147048-176147068 12 1.73e-04 TGGTCTTTGG CAAATCAC A chr9:88555920-88555940 13 1.88e-04 GCGATCGTCT CTAATCTC chr15:69452888-69452908 9 2.13e-04 CCGTGGCT GGGATCTC GCGG chr5:169010748-169010768 11 2.13e-04 GAACTGCATT CAAATATC CC chr6:146285596-146285616 11 2.69e-04 AGGATACAGT GGAGTCTC GC chr3:194304650-194304670 8 2.69e-04 GGCCGCG GGACTCTC GCTCC chr15:48470542-48470562 13 3.06e-04 CTCAGTAACC CGGATCTC chr15:33200852-33200872 7 3.06e-04 GGTCTC AAAGtctc gaagtg chr17:4167292-4167312 9 3.58e-04 TGCGGAAC GGAATCAC CAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SRAATCTC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:176449668-176449688 1.8e-05 11_[+5]_1 chr4:26322596-26322616 3.1e-05 11_[+5]_1 chr17:27717293-27717313 3.8e-05 12_[+5] chr9:125937358-125937378 9.6e-05 2_[+5]_10 chr15:22833406-22833426 9.6e-05 11_[+5]_1 chr13:21750741-21750761 9.6e-05 11_[+5]_1 chr8:144911542-144911562 9.6e-05 12_[+5] chr12:29534169-29534189 0.00011 9_[+5]_3 chr2:225450225-225450245 0.00011 12_[+5] chr1:176147048-176147068 0.00017 11_[+5]_1 chr9:88555920-88555940 0.00019 12_[+5] chr15:69452888-69452908 0.00021 8_[+5]_4 chr5:169010748-169010768 0.00021 10_[+5]_2 chr6:146285596-146285616 0.00027 10_[+5]_2 chr3:194304650-194304670 0.00027 7_[+5]_5 chr15:48470542-48470562 0.00031 12_[+5] chr15:33200852-33200872 0.00031 6_[+5]_6 chr17:4167292-4167312 0.00036 8_[+5]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SRAATCTC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SRAATCTC width=8 seqs=18 chr5:176449668-176449688 ( 12) CAAATCTC 1 chr4:26322596-26322616 ( 12) GGAATCTC 1 chr17:27717293-27717313 ( 13) AAAATCTC 1 chr9:125937358-125937378 ( 3) TAAATCTC 1 chr15:22833406-22833426 ( 12) GAACTCTC 1 chr13:21750741-21750761 ( 12) GAAGTCTC 1 chr8:144911542-144911562 ( 13) GAACTCTC 1 chr12:29534169-29534189 ( 10) CAGATCTC 1 chr2:225450225-225450245 ( 13) CAGATCTC 1 chr1:176147048-176147068 ( 12) CAAATCAC 1 chr9:88555920-88555940 ( 13) CTAATCTC 1 chr15:69452888-69452908 ( 9) GGGATCTC 1 chr5:169010748-169010768 ( 11) CAAATATC 1 chr6:146285596-146285616 ( 11) GGAGTCTC 1 chr3:194304650-194304670 ( 8) GGACTCTC 1 chr15:48470542-48470562 ( 13) CGGATCTC 1 chr15:33200852-33200872 ( 7) AAAGTCTC 1 chr17:4167292-4167312 ( 9) GGAATCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SRAATCTC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.33985 E= 6.7e+002 -89 38 58 -183 157 -1081 17 -183 191 -1081 -42 -1081 169 -84 -83 -1081 -1081 -1081 -1081 234 -189 166 -1081 -1081 -89 -1081 -1081 217 -1081 174 -1081 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SRAATCTC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 6.7e+002 0.111111 0.388889 0.444444 0.055556 0.611111 0.000000 0.333333 0.055556 0.777778 0.000000 0.222222 0.000000 0.666667 0.166667 0.166667 0.000000 0.000000 0.000000 0.000000 1.000000 0.055556 0.944444 0.000000 0.000000 0.111111 0.000000 0.000000 0.888889 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SRAATCTC MEME-5 regular expression -------------------------------------------------------------------------------- [GC][AG][AG]ATCTC -------------------------------------------------------------------------------- Time 11.75 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:106584352-10658437 7.50e-01 20 chr11:46143417-46143437 7.54e-01 20 chrX:153140973-153140993 4.96e-01 20 chr15:75287794-75287814 2.22e-01 20 chr10:135186908-13518692 1.26e-02 4_[+2(6.99e-05)]_8 chr9:128845150-128845170 7.72e-01 20 chr16:90089016-90089036 1.98e-01 20 chr18:34850198-34850218 3.95e-01 20 chr5:151304284-151304304 7.16e-02 20 chr1:35390598-35390618 4.28e-01 20 chr15:74583986-74584006 1.15e-02 5_[+3(1.99e-05)]_7 chr6:69942931-69942951 6.12e-03 4_[+3(1.99e-05)]_8 chr1:159147276-159147296 5.68e-02 4_[+4(1.35e-05)]_8 chr11:70496595-70496615 9.71e-01 20 chr3:160117032-160117052 6.52e-01 20 chr9:123605264-123605284 9.04e-01 20 chr1:207226333-207226353 2.98e-01 20 chr20:10200283-10200303 2.54e-01 20 chr16:30412019-30412039 9.42e-02 20 chr5:139493620-139493640 1.86e-04 8_[+1(1.97e-05)]_4 chr16:87985069-87985089 3.34e-01 20 chr20:36255556-36255576 1.56e-01 20 chr10:124671591-12467161 3.77e-02 20 chr12:11653686-11653706 3.33e-02 20 chr12:49351326-49351346 5.82e-01 20 chr10:75118536-75118556 1.82e-02 20 chr1:232941105-232941125 6.63e-01 20 chr14:106267689-10626770 6.87e-02 20 chr19:55166499-55166519 3.48e-01 20 chr6:1665657-1665677 1.53e-01 20 chr3:42109001-42109021 1.45e-01 20 chr1:176147048-176147068 3.12e-02 20 chr5:176264777-176264797 7.79e-03 5_[+2(4.02e-05)]_7 chr10:51565135-51565155 5.96e-04 7_[+5(6.40e-05)]_5 chr9:126872774-126872794 7.49e-01 20 chr11:13484841-13484861 1.77e-02 6_[+2(6.99e-05)]_6 chr2:242295507-242295527 4.23e-01 20 chr17:74449380-74449400 7.08e-01 20 chr14:36004560-36004580 9.47e-03 6_[+2(9.94e-05)]_6 chr1:21985805-21985825 1.65e-02 9_[+2(9.94e-05)]_3 chr19:52408312-52408332 4.00e-01 20 chr17:7760908-7760928 8.87e-02 20 chr6:151711696-151711716 8.89e-01 20 chr1:54873364-54873384 7.65e-01 20 chr10:31608462-31608482 5.87e-01 20 chr16:84150456-84150476 7.61e-02 20 chr3:56528889-56528909 4.68e-02 20 chr12:58134982-58135002 9.90e-01 20 chr19:52511494-52511514 9.17e-01 20 chr12:27091355-27091375 8.44e-02 20 chr2:225450225-225450245 9.84e-03 20 chr1:53833925-53833945 3.34e-03 4_[+4(8.08e-06)]_8 chr22:40446424-40446444 8.97e-01 20 chr1:207224384-207224404 9.35e-01 20 chr7:107279161-107279181 6.21e-01 20 chrX:153236510-153236530 1.34e-01 20 chr1:6305283-6305303 1.76e-01 20 chr1:26735193-26735213 7.85e-02 20 chr2:223777071-223777091 1.57e-01 20 chr19:37341696-37341716 4.73e-02 20 chr9:135457572-135457592 6.17e-01 20 chr12:90102616-90102636 8.48e-01 20 chr8:10847827-10847847 9.78e-01 20 chr5:63259098-63259118 1.34e-01 20 chr5:81047248-81047268 9.23e-01 20 chr17:40118680-40118700 3.56e-01 20 chr5:169010748-169010768 2.28e-01 20 chr17:4167292-4167312 2.25e-02 20 chr14:100705128-10070514 9.39e-02 12_[+2(6.99e-05)] chr17:53046075-53046095 3.56e-03 1_[+1(1.97e-05)]_11 chr9:74164136-74164156 9.69e-01 20 chr12:2861977-2861997 8.86e-01 20 chr8:42249122-42249142 4.94e-01 20 chr1:155829332-155829352 4.92e-01 20 chr20:30556381-30556401 1.74e-02 12_[+3(1.99e-05)] chr19:12943373-12943393 3.23e-02 20 chr7:90893717-90893737 6.56e-01 20 chr17:16472622-16472642 8.77e-01 20 chr19:597743-597763 9.76e-01 20 chr1:12138821-12138841 6.05e-01 20 chr4:15683251-15683271 8.37e-03 20 chr22:42793454-42793474 1.46e-01 20 chr20:25604742-25604762 1.41e-02 20 chr3:134521993-134522013 1.44e-01 20 chr19:46172236-46172256 4.21e-01 20 chr11:61334842-61334862 4.51e-01 20 chr19:52430599-52430619 5.73e-01 20 chr17:56416008-56416028 4.35e-01 20 chr2:136743193-136743213 1.59e-02 2_[+1(1.97e-05)]_10 chr19:4124169-4124189 4.14e-01 20 chr9:95640435-95640455 6.39e-01 20 chr4:140374888-140374908 6.55e-01 20 chr16:87811586-87811606 3.83e-01 20 chr20:35012599-35012619 9.91e-01 20 chr17:27717293-27717313 4.64e-03 12_[+5(3.77e-05)] chr7:158497495-158497515 2.67e-01 20 chr5:176449668-176449688 5.25e-03 11_[+5(1.83e-05)]_1 chr1:53308504-53308524 7.44e-01 20 chr3:49131534-49131554 2.17e-02 20 chr6:5507452-5507472 6.35e-01 20 chr17:55162389-55162409 4.33e-01 20 chr18:47340182-47340202 3.07e-01 20 chr19:50379980-50380000 1.55e-01 20 chr4:79583426-79583446 6.92e-01 20 chr17:2653230-2653250 2.31e-02 20 chr10:7830033-7830053 8.46e-03 2_[+1(1.97e-05)]_10 chr6:44355262-44355282 5.73e-01 20 chr4:6548497-6548517 7.50e-02 20 chr6:116601103-116601123 1.82e-01 20 chr15:66649023-66649043 3.58e-02 9_[+1(8.04e-05)]_3 chr2:170683928-170683948 7.07e-01 20 chr3:194304650-194304670 3.30e-02 20 chr2:176032935-176032955 9.27e-01 20 chr17:37607574-37607594 2.79e-02 3_[+1(8.04e-05)]_9 chr19:42705937-42705957 8.54e-01 20 chr2:206511563-206511583 5.81e-01 20 chr16:47557394-47557414 6.72e-01 20 chr12:57940990-57941010 3.16e-01 20 chr6:97731178-97731198 7.25e-01 20 chr22:28315875-28315895 1.42e-01 20 chr5:175298895-175298915 8.30e-01 20 chr6:143832508-143832528 4.19e-01 20 chr17:70511939-70511959 7.37e-01 20 chr5:158854692-158854712 3.95e-01 20 chr9:88555920-88555940 7.76e-03 20 chr12:117296030-11729605 5.74e-01 20 chr2:219773800-219773820 2.47e-02 1_[+1(1.97e-05)]_11 chr7:154861821-154861841 6.32e-01 20 chr8:144911542-144911562 5.65e-02 12_[+5(9.64e-05)] chr4:26322596-26322616 2.35e-02 11_[+5(3.14e-05)]_1 chr7:5437140-5437160 4.49e-01 20 chr11:77899495-77899515 7.82e-01 20 chr7:7291593-7291613 8.11e-01 20 chr8:38089085-38089105 3.31e-01 20 chr16:29911386-29911406 7.39e-03 9_[+4(2.19e-05)]_3 chr15:85197536-85197556 6.81e-01 20 chr3:67164410-67164430 1.69e-02 2_[+2(2.05e-05)]_10 chr19:50490550-50490570 5.83e-01 20 chr15:38962961-38962981 1.10e-01 20 chr9:98637882-98637902 6.61e-03 [+1(1.97e-05)]_12 chr10:102820520-10282054 1.63e-04 2_[+4(4.80e-05)]_2_[+1(8.04e-05)] chr16:20885985-20886005 9.16e-01 20 chr7:102036650-102036670 7.98e-02 20 chr3:48699283-48699303 3.73e-01 20 chr2:113540248-113540268 3.01e-01 20 chr13:21750741-21750761 2.22e-04 [+1(1.97e-05)]_3_[+5(9.64e-05)]_1 chr9:133002141-133002161 6.12e-01 20 chr17:4843569-4843589 8.35e-03 20 chr15:33200852-33200872 6.99e-02 20 chr7:1980162-1980182 5.28e-02 20 chr6:146285596-146285616 1.31e-01 20 chr6:71122933-71122953 3.90e-02 20 chr1:167905804-167905824 9.40e-01 20 chr6:3027425-3027445 6.63e-01 20 chr2:120517289-120517309 9.35e-01 20 chr6:28863402-28863422 2.94e-01 20 chr6:33168637-33168657 3.68e-03 20 chr15:78730471-78730491 1.50e-01 20 chr12:11324268-11324288 1.20e-01 20 chr12:29534169-29534189 4.85e-03 20 chr3:128444846-128444866 2.69e-01 20 chrX:12996195-12996215 2.47e-02 5_[+3(3.37e-05)]_7 chr19:4769698-4769718 3.55e-03 [+3(1.99e-05)]_12 chr1:111991953-111991973 8.14e-01 20 chr4:17812534-17812554 3.26e-02 20 chr10:50970479-50970499 7.58e-01 20 chr19:40502609-40502629 6.49e-01 20 chr19:37663716-37663736 8.54e-01 20 chr15:22833406-22833426 2.55e-02 11_[+5(9.64e-05)]_1 chr2:219264447-219264467 9.16e-01 20 chr1:98513954-98513974 1.55e-02 5_[+2(4.02e-05)]_7 chr5:138940736-138940756 6.84e-01 20 chr14:62547929-62547949 5.60e-01 20 chr1:78444873-78444893 4.54e-01 20 chr12:30848890-30848910 8.62e-01 20 chr15:80189038-80189058 4.42e-01 20 chr2:160568953-160568973 6.57e-01 20 chr17:4852782-4852802 8.07e-01 20 chr18:20512974-20512994 2.66e-02 20 chr5:56469893-56469913 2.61e-01 20 chr17:38708920-38708940 1.26e-01 20 chr5:58423559-58423579 9.55e-02 20 chrX:13752750-13752770 7.74e-03 6_[+1(8.04e-05)]_6 chr1:249120312-249120332 4.44e-01 20 chr22:50050629-50050649 3.09e-01 20 chr15:69452888-69452908 2.44e-02 20 chr22:30683844-30683864 6.07e-02 20 chr1:104068547-104068567 6.30e-01 20 chr15:76474107-76474127 3.82e-02 6_[+4(7.39e-05)]_6 chr10:90639927-90639947 9.58e-01 20 chr12:96883253-96883273 7.17e-01 20 chr8:70730610-70730630 2.89e-01 20 chr6:157390066-157390086 1.09e-01 20 chr19:52111398-52111418 9.70e-01 20 chr7:69703258-69703278 5.35e-01 20 chr8:101464474-101464494 1.03e-01 20 chr20:10415838-10415858 8.78e-01 20 chr16:49192156-49192176 1.57e-01 20 chr3:157816045-157816065 9.50e-02 20 chr9:6413147-6413167 2.47e-02 1_[+1(1.97e-05)]_11 chr11:9336143-9336163 4.18e-01 20 chr3:39297019-39297039 6.82e-01 20 chr4:103749205-103749225 8.39e-01 20 chr11:119039318-11903933 3.85e-01 20 chr2:196521858-196521878 4.90e-01 20 chr17:2415226-2415246 7.44e-02 20 chr3:142315118-142315138 7.76e-01 20 chr1:70820451-70820471 5.80e-01 20 chr1:78148388-78148408 4.41e-02 2_[+1(8.04e-05)]_10 chr6:52285019-52285039 6.34e-01 20 chr5:175224018-175224038 4.19e-01 20 chr11:66057121-66057141 2.02e-01 20 chr1:54842307-54842327 4.79e-02 5_[+4(1.35e-05)]_7 chrX:77154867-77154887 5.61e-02 20 chr10:101989360-10198938 5.70e-03 11_[+1(1.97e-05)]_1 chr8:134581016-134581036 9.39e-01 20 chr5:74964970-74964990 1.00e-01 20 chr8:29413393-29413413 9.13e-01 20 chr9:114660319-114660339 5.09e-02 20 chr3:169684531-169684551 8.17e-01 20 chr18:47814318-47814338 4.93e-01 20 chr19:18668387-18668407 6.62e-01 20 chr15:76603810-76603830 3.57e-02 2_[+1(1.97e-05)]_10 chrX:63615404-63615424 9.92e-01 20 chr6:35995464-35995484 8.69e-01 20 chr1:19923458-19923478 1.31e-04 12_[+1(1.97e-05)] chrX:53711225-53711245 4.40e-02 20 chr2:231091145-231091165 8.45e-01 20 chr13:53542383-53542403 9.17e-03 2_[+3(1.99e-05)]_10 chr10:69609233-69609253 6.92e-03 1_[+1(1.97e-05)]_11 chr9:125937358-125937378 3.93e-04 2_[+5(9.64e-05)]_10 chr12:129308556-12930857 1.60e-02 [+1(1.97e-05)]_12 chr1:200988808-200988828 2.15e-01 20 chr16:67219422-67219442 4.54e-01 20 chr16:83841575-83841595 2.59e-01 20 chr7:24330073-24330093 6.01e-01 20 chr16:3018965-3018985 2.17e-01 20 chr5:137688199-137688219 6.21e-01 20 chr15:64279143-64279163 4.28e-01 20 chr5:175788809-175788829 1.41e-03 9_[+1(4.82e-05)]_3 chr15:73925755-73925775 3.59e-01 20 chr2:11884252-11884272 9.46e-02 20 chr13:31736566-31736586 8.58e-01 20 chr5:132387643-132387663 4.41e-01 20 chr15:48470542-48470562 9.17e-03 20 chr3:197461664-197461684 7.78e-01 20 chr1:3817244-3817264 1.46e-01 20 chr2:96873614-96873634 9.31e-02 20 chr12:125473658-12547367 7.12e-01 20 chr3:139108515-139108535 8.52e-02 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n09.farnam.hpc.yale.internal ********************************************************************************