******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/RAD21.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr4:148511598-148511618 1.0000 20 chr9:103358061-103358081 1.0000 20 chr1:66153532-66153552 1.0000 20 chr3:150439266-150439286 1.0000 20 chr4:122229118-122229138 1.0000 20 chr3:195980644-195980664 1.0000 20 chr3:185701483-185701503 1.0000 20 chr15:34354304-34354324 1.0000 20 chr12:14320139-14320159 1.0000 20 chr2:152893552-152893572 1.0000 20 chr12:53746569-53746589 1.0000 20 chr3:24040610-24040630 1.0000 20 chr10:11767374-11767394 1.0000 20 chr2:227994719-227994739 1.0000 20 chr4:105781854-105781874 1.0000 20 chr11:94887828-94887848 1.0000 20 chr11:116976859-11697687 1.0000 20 chr3:32551799-32551819 1.0000 20 chr7:55709067-55709087 1.0000 20 chr4:38677326-38677346 1.0000 20 chr7:115778445-115778465 1.0000 20 chr11:14271062-14271082 1.0000 20 chr6:56224212-56224232 1.0000 20 chr11:102483860-10248388 1.0000 20 chr11:6400677-6400697 1.0000 20 chr1:66719184-66719204 1.0000 20 chr3:141171041-141171061 1.0000 20 chr9:128137165-128137185 1.0000 20 chr8:48227983-48228003 1.0000 20 chr5:10452994-10453014 1.0000 20 chr14:36156709-36156729 1.0000 20 chr4:82388730-82388750 1.0000 20 chr4:122821729-122821749 1.0000 20 chr11:33992730-33992750 1.0000 20 chr18:59798737-59798757 1.0000 20 chr6:137592906-137592926 1.0000 20 chr4:94685961-94685981 1.0000 20 chr4:146155440-146155460 1.0000 20 chr4:122113765-122113785 1.0000 20 chr12:6574807-6574827 1.0000 20 chr2:213551215-213551235 1.0000 20 chr2:122476474-122476494 1.0000 20 chr4:69364313-69364333 1.0000 20 chr4:27012157-27012177 1.0000 20 chr3:115411915-115411935 1.0000 20 chr14:61092248-61092268 1.0000 20 chr2:181969421-181969441 1.0000 20 chr2:198243303-198243323 1.0000 20 chr3:130478761-130478781 1.0000 20 chr1:152898743-152898763 1.0000 20 chr6:134245260-134245280 1.0000 20 chr17:47393029-47393049 1.0000 20 chr6:47065271-47065291 1.0000 20 chr6:25018388-25018408 1.0000 20 chr14:76517331-76517351 1.0000 20 chr9:92218080-92218100 1.0000 20 chr9:1605130-1605150 1.0000 20 chr12:94926758-94926778 1.0000 20 chr1:94095215-94095235 1.0000 20 chr4:3347973-3347993 1.0000 20 chr18:33864831-33864851 1.0000 20 chr14:62593765-62593785 1.0000 20 chr16:80561391-80561411 1.0000 20 chr17:19669953-19669973 1.0000 20 chr18:20393784-20393804 1.0000 20 chr13:76450705-76450725 1.0000 20 chr11:109724091-10972411 1.0000 20 chr5:149370513-149370533 1.0000 20 chr15:44196158-44196178 1.0000 20 chr4:71467335-71467355 1.0000 20 chr4:70747066-70747086 1.0000 20 chr10:92671519-92671539 1.0000 20 chr1:104057729-104057749 1.0000 20 chr14:67894021-67894041 1.0000 20 chr13:75794028-75794048 1.0000 20 chr5:94186137-94186157 1.0000 20 chr3:59299259-59299279 1.0000 20 chr5:138598496-138598516 1.0000 20 chr14:102237461-10223748 1.0000 20 chr15:49154200-49154220 1.0000 20 chr3:99973192-99973212 1.0000 20 chr18:52902048-52902068 1.0000 20 chr1:145421819-145421839 1.0000 20 chr12:44276550-44276570 1.0000 20 chr10:26846175-26846195 1.0000 20 chr6:144426226-144426246 1.0000 20 chr17:53591540-53591560 1.0000 20 chr6:91189207-91189227 1.0000 20 chr14:70285602-70285622 1.0000 20 chr15:55940747-55940767 1.0000 20 chr13:61005426-61005446 1.0000 20 chr3:56736709-56736729 1.0000 20 chr1:202541038-202541058 1.0000 20 chr5:125992284-125992304 1.0000 20 chr7:81586028-81586048 1.0000 20 chr5:157602122-157602142 1.0000 20 chr1:200457995-200458015 1.0000 20 chr1:198740892-198740912 1.0000 20 chrX:130050982-130051002 1.0000 20 chr15:51942303-51942323 1.0000 20 chr9:119499513-119499533 1.0000 20 chr12:51925866-51925886 1.0000 20 chr5:52244506-52244526 1.0000 20 chr8:126656952-126656972 1.0000 20 chr4:157090243-157090263 1.0000 20 chr16:68834319-68834339 1.0000 20 chr12:122884201-12288422 1.0000 20 chr8:82147656-82147676 1.0000 20 chr22:37713062-37713082 1.0000 20 chr1:247650577-247650597 1.0000 20 chr11:63246466-63246486 1.0000 20 chr10:64004938-64004958 1.0000 20 chrX:149940811-149940831 1.0000 20 chr13:95841779-95841799 1.0000 20 chr7:17809648-17809668 1.0000 20 chr8:28451650-28451670 1.0000 20 chr3:141280464-141280484 1.0000 20 chr1:110319642-110319662 1.0000 20 chr4:57167819-57167839 1.0000 20 chr14:93147581-93147601 1.0000 20 chrX:73075540-73075560 1.0000 20 chr3:69210932-69210952 1.0000 20 chr2:208610960-208610980 1.0000 20 chr9:21814046-21814066 1.0000 20 chr13:42908393-42908413 1.0000 20 chr20:937265-937285 1.0000 20 chr2:65867843-65867863 1.0000 20 chr10:33297810-33297830 1.0000 20 chr3:97742253-97742273 1.0000 20 chr5:14648849-14648869 1.0000 20 chr3:73552005-73552025 1.0000 20 chr3:194033619-194033639 1.0000 20 chr3:98321101-98321121 1.0000 20 chr12:115100581-11510060 1.0000 20 chr20:17879311-17879331 1.0000 20 chr6:52027921-52027941 1.0000 20 chr3:73135314-73135334 1.0000 20 chr3:5099636-5099656 1.0000 20 chr6:155249659-155249679 1.0000 20 chr8:42547823-42547843 1.0000 20 chr18:77141013-77141033 1.0000 20 chr14:71605900-71605920 1.0000 20 chr14:33045485-33045505 1.0000 20 chr3:100181950-100181970 1.0000 20 chr1:205626838-205626858 1.0000 20 chr7:135486004-135486024 1.0000 20 chr15:42281885-42281905 1.0000 20 chr6:104973769-104973789 1.0000 20 chr5:154029932-154029952 1.0000 20 chr10:97123233-97123253 1.0000 20 chr16:72536188-72536208 1.0000 20 chr3:186258464-186258484 1.0000 20 chr6:52281515-52281535 1.0000 20 chr10:125319016-12531903 1.0000 20 chr2:38059910-38059930 1.0000 20 chr13:103792802-10379282 1.0000 20 chr1:43539472-43539492 1.0000 20 chr1:182366017-182366037 1.0000 20 chr5:89561255-89561275 1.0000 20 chr7:112190691-112190711 1.0000 20 chr10:33084701-33084721 1.0000 20 chr6:111003730-111003750 1.0000 20 chr1:156195387-156195407 1.0000 20 chr6:30796437-30796457 1.0000 20 chr12:48936273-48936293 1.0000 20 chr18:12934649-12934669 1.0000 20 chr1:111003049-111003069 1.0000 20 chr11:63403494-63403514 1.0000 20 chr1:40439338-40439358 1.0000 20 chr8:42660565-42660585 1.0000 20 chr21:35975505-35975525 1.0000 20 chr2:99453714-99453734 1.0000 20 chr1:25015218-25015238 1.0000 20 chr8:28181994-28182014 1.0000 20 chr10:91553600-91553620 1.0000 20 chr5:143204848-143204868 1.0000 20 chr11:117924282-11792430 1.0000 20 chr5:4879998-4880018 1.0000 20 chr20:18613028-18613048 1.0000 20 chr20:33462010-33462030 1.0000 20 chr10:61385960-61385980 1.0000 20 chr10:64353944-64353964 1.0000 20 chr5:169653031-169653051 1.0000 20 chr1:165687317-165687337 1.0000 20 chr8:109930809-109930829 1.0000 20 chr8:8527391-8527411 1.0000 20 chr11:46911348-46911368 1.0000 20 chr12:9901443-9901463 1.0000 20 chr11:12303557-12303577 1.0000 20 chr20:39597553-39597573 1.0000 20 chr14:54006390-54006410 1.0000 20 chr1:173400501-173400521 1.0000 20 chr10:85631407-85631427 1.0000 20 chr19:52160369-52160389 1.0000 20 chr8:37637523-37637543 1.0000 20 chr21:36003019-36003039 1.0000 20 chr5:108017185-108017205 1.0000 20 chr12:8697011-8697031 1.0000 20 chr9:74896027-74896047 1.0000 20 chr6:3279964-3279984 1.0000 20 chr11:75156538-75156558 1.0000 20 chr1:230446492-230446512 1.0000 20 chr4:119903117-119903137 1.0000 20 chr19:38393412-38393432 1.0000 20 chr2:197318478-197318498 1.0000 20 chr22:46512552-46512572 1.0000 20 chr2:106721004-106721024 1.0000 20 chr8:96261092-96261112 1.0000 20 chr2:58133464-58133484 1.0000 20 chr3:194193199-194193219 1.0000 20 chr22:20144689-20144709 1.0000 20 chr14:62304490-62304510 1.0000 20 chr6:51824738-51824758 1.0000 20 chr2:149874083-149874103 1.0000 20 chr3:137787600-137787620 1.0000 20 chr13:96056708-96056728 1.0000 20 chr14:73938980-73939000 1.0000 20 chr7:86941777-86941797 1.0000 20 chr3:106954879-106954899 1.0000 20 chr5:40688398-40688418 1.0000 20 chr3:187465960-187465980 1.0000 20 chr1:93459836-93459856 1.0000 20 chr2:191247775-191247795 1.0000 20 chr12:125667867-12566788 1.0000 20 chr3:196336329-196336349 1.0000 20 chr11:110072236-11007225 1.0000 20 chr11:77939603-77939623 1.0000 20 chr3:98833587-98833607 1.0000 20 chr18:56431689-56431709 1.0000 20 chr18:47385271-47385291 1.0000 20 chr1:111326102-111326122 1.0000 20 chr1:51655274-51655294 1.0000 20 chr3:136732880-136732900 1.0000 20 chr2:175327682-175327702 1.0000 20 chr18:60650064-60650084 1.0000 20 chr6:158642087-158642107 1.0000 20 chr15:75242879-75242899 1.0000 20 chr16:75233409-75233429 1.0000 20 chr4:36401569-36401589 1.0000 20 chr10:72309797-72309817 1.0000 20 chr20:20549419-20549439 1.0000 20 chr6:136547531-136547551 1.0000 20 chr18:77288939-77288959 1.0000 20 chr14:73371825-73371845 1.0000 20 chr12:67082796-67082816 1.0000 20 chr3:192162465-192162485 1.0000 20 chr5:71819992-71820012 1.0000 20 chr7:144089034-144089054 1.0000 20 chr3:44365035-44365055 1.0000 20 chr6:46058044-46058064 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_RAD21/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/RAD21.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.227 C 0.279 G 0.288 T 0.206 Background letter frequencies (from file dataset with add-one prior applied): A 0.227 C 0.279 G 0.288 T 0.206 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AGRKGGCR MEME-1 width = 8 sites = 78 llr = 556 E-value = 2.8e-068 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGRKGGCR MEME-1 Description -------------------------------------------------------------------------------- Simplified A 9:6:::16 pos.-specific C ::::::8: probability G :a45a9:4 matrix T 1::5:11: bits 2.3 2.0 1.8 * * 1.6 ** * Relative 1.4 ** * Entropy 1.1 ** *** (10.3 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AGATGGCA consensus GG G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRKGGCR MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:125667867-12566788 10 1.61e-05 TCAGCCACG AGATGGCA ATG chr22:20144689-20144709 9 1.61e-05 TCACCACC AGATGGCA CCAT chr12:9901443-9901463 3 1.61e-05 CT AGATGGCA CTGCAGCTTT chr14:71605900-71605920 2 1.61e-05 A AGATGGCA GTAGGAGCTC chrX:73075540-73075560 3 1.61e-05 CC AGATGGCA GCATAAAATC chr15:55940747-55940767 3 1.61e-05 CT AGATGGCA TCTGTGTACC chr7:55709067-55709087 1 1.61e-05 . agatggca ccttaatccc chr3:185701483-185701503 5 1.61e-05 CACT AGATGGCA GTATGAGT chr2:106721004-106721024 8 3.64e-05 CACCGCT AGGTGGCA GTAAA chr12:8697011-8697031 2 3.64e-05 T AGGTGGCA GTAACAGGCT chr1:165687317-165687337 5 3.64e-05 CACT AGGTGGCA TGCACATA chr4:71467335-71467355 2 3.64e-05 C AGGTGGCA CCATCAGATA chr14:61092248-61092268 9 3.64e-05 TGGCCAGC AGGTGGCA CTCA chr4:69364313-69364333 5 3.64e-05 CTCT AGGTGGCA CCCACAAG chr11:94887828-94887848 3 3.64e-05 GC AGGTGGCA ACAGAGGCCA chr2:175327682-175327702 6 5.89e-05 ccagc agagggca gagtgag chr6:3279964-3279984 5 5.89e-05 CACT AGAGGGCA GCATACGC chr5:108017185-108017205 1 5.89e-05 . AGAGGGCA CAATTGTTTT chr5:4879998-4880018 1 5.89e-05 . AGAGGGCA GCCAAGGACC chr7:112190691-112190711 3 5.89e-05 gt agagggca ctagagtaac chr3:98321101-98321121 1 5.89e-05 . AGAGGGCA CTCACCTACT chr4:157090243-157090263 7 5.89e-05 gtcaat agagggca ctggag chr3:56736709-56736729 8 5.89e-05 TTCCAGC AGAGGGCA GCAAA chr4:122113765-122113785 2 5.89e-05 T AGAGGGCA CTCTGCACTC chr6:56224212-56224232 2 5.89e-05 C AGAGGGCA CCAAAGCACC chr15:34354304-34354324 6 5.89e-05 CCACA AGAGGGCA GCAGCCT chr2:149874083-149874103 9 7.93e-05 TCTCCACC AGATGGCG CCAG chr8:37637523-37637543 3 7.93e-05 CT AGATGGCG ACATTGGCTA chr7:135486004-135486024 3 7.93e-05 CA AGATGGCG CTCTCTTCTT chr12:115100581-11510060 4 7.93e-05 AGC AGATGGCG GCAAAAGAG chr2:152893552-152893572 8 7.93e-05 AGCCACA AGATGGCG CATGT chr3:106954879-106954899 3 1.08e-04 GC AGGGGGCA GTAGGATATC chr3:100181950-100181970 6 1.08e-04 ACTCT AGGGGGCA GACTTGA chr7:17809648-17809668 7 1.08e-04 TCCAGG AGGGGGCA TCAGAC chr14:76517331-76517351 2 1.08e-04 C AGGGGGCA ACATTCTCCC chr11:110072236-11007225 5 1.34e-04 CACC AGGTGGCG GCATGAGA chr20:18613028-18613048 6 1.34e-04 CCAGT AGGTGGCG GTGGGTA chr3:44365035-44365055 1 1.62e-04 . AGAGGGCG AGCAAAGGGA chr1:173400501-173400521 8 1.62e-04 GGGCACT AGAGGGCG CTCTC chr6:155249659-155249679 1 1.62e-04 . AGAGGGCG CTCCTTGCAA chr9:119499513-119499533 1 1.62e-04 . AGAGGGCG CCCGGGGCCT chr19:38393412-38393432 5 2.22e-04 CTCT AGGGGGCG CTGCACTC chr8:109930809-109930829 2 2.22e-04 A AGATGTCA GTCATGCAAC chrX:149940811-149940831 4 2.22e-04 AGC AGGGGGCG CTGTAGGAC chr6:137592906-137592926 11 2.22e-04 ATAATCCACT AGATGTCA AT chr14:54006390-54006410 6 2.64e-04 CCAGC AGGTGTCA CTGTGGG chr11:77939603-77939623 12 3.58e-04 TGTGGCCACC AGATGGTG T chr15:49154200-49154220 8 3.58e-04 AACCACC AGATGGTG CTATG chr6:52281515-52281535 7 3.76e-04 CCCAGC AGAGGGAA GCAGAA chr3:150439266-150439286 7 3.76e-04 AACACT AGAGGGAA GCATGC chr3:195980644-195980664 2 4.17e-04 A AGGGGTCA CTGTTGAACT chr10:91553600-91553620 3 4.34e-04 CC AGATGGAG ACAAAGCACT chr5:10452994-10453014 3 4.34e-04 CT AGATGGAG ACATTGTGTT chr10:72309797-72309817 5 4.90e-04 CACC AGGTGGTG CCAGTGAC chr14:33045485-33045505 2 4.90e-04 C AGGTGGTG CTGTTTACCC chr15:51942303-51942323 5 4.90e-04 CACC TGGTGGCA GTATTTCC chr1:145421819-145421839 2 4.90e-04 C AGGTGGTG CTAGTGACTA chr18:20393784-20393804 3 4.90e-04 CT AGGTGGTG CTAATTGACT chr6:134245260-134245280 4 4.90e-04 ACA TGGTGGCA GCCTTGTCT chr2:181969421-181969441 11 4.90e-04 TGTAACCACT AGGTGGTG GT chr3:137787600-137787620 5 5.75e-04 CACC AGAGGTCG CCGCAGGA chr20:33462010-33462030 11 5.75e-04 TATAGACAGG AGGGGGAA GC chr5:125992284-125992304 3 5.75e-04 GA AGAGGTCG GTGTTGCGTC chr13:76450705-76450725 13 5.75e-04 TCTCACCACT AGGGGGAA chr4:82388730-82388750 1 6.29e-04 . AGATGGCT CCTCGTTCCT chr15:42281885-42281905 7 7.39e-04 GACACA TGGGGGCA CCCTTG chr3:59299259-59299279 11 7.39e-04 GAGAGGCAGA TGGGGGCA GC chr15:44196158-44196178 2 7.39e-04 A AGGGGTCG CTATTCCCTA chr4:119903117-119903137 4 8.82e-04 ACT TGAGGGCG GCATTGCCT chr6:30796437-30796457 7 8.82e-04 CCCACC AGGGGGAG CCCTTT chr13:95841779-95841799 10 8.82e-04 AGCATGAGT ACATGGCA TGC chr20:17879311-17879331 11 8.92e-04 CGGCAGCATC AGGTGTTA GG chr6:52027921-52027941 1 9.17e-04 . AGATGACA GCAGTTGATA chr22:37713062-37713082 7 1.06e-03 GTCAGC AGGGGGCT CCCACC chr17:19669953-19669973 6 1.06e-03 CTGCC TGGGGGCG GGCGCCC chr1:66719184-66719204 3 1.06e-03 CT AGATGTTG CTCTTGCAAT chr5:169653031-169653051 2 1.37e-03 C AGAGGGCC CCATAGGAGC chr3:5099636-5099656 7 1.37e-03 TGAGAT ACGGGGCA TGCACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRKGGCR MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:125667867-12566788 1.6e-05 9_[+1]_3 chr22:20144689-20144709 1.6e-05 8_[+1]_4 chr12:9901443-9901463 1.6e-05 2_[+1]_10 chr14:71605900-71605920 1.6e-05 1_[+1]_11 chrX:73075540-73075560 1.6e-05 2_[+1]_10 chr15:55940747-55940767 1.6e-05 2_[+1]_10 chr7:55709067-55709087 1.6e-05 [+1]_12 chr3:185701483-185701503 1.6e-05 4_[+1]_8 chr2:106721004-106721024 3.6e-05 7_[+1]_5 chr12:8697011-8697031 3.6e-05 1_[+1]_11 chr1:165687317-165687337 3.6e-05 4_[+1]_8 chr4:71467335-71467355 3.6e-05 1_[+1]_11 chr14:61092248-61092268 3.6e-05 8_[+1]_4 chr4:69364313-69364333 3.6e-05 4_[+1]_8 chr11:94887828-94887848 3.6e-05 2_[+1]_10 chr2:175327682-175327702 5.9e-05 5_[+1]_7 chr6:3279964-3279984 5.9e-05 4_[+1]_8 chr5:108017185-108017205 5.9e-05 [+1]_12 chr5:4879998-4880018 5.9e-05 [+1]_12 chr7:112190691-112190711 5.9e-05 2_[+1]_10 chr3:98321101-98321121 5.9e-05 [+1]_12 chr4:157090243-157090263 5.9e-05 6_[+1]_6 chr3:56736709-56736729 5.9e-05 7_[+1]_5 chr4:122113765-122113785 5.9e-05 1_[+1]_11 chr6:56224212-56224232 5.9e-05 1_[+1]_11 chr15:34354304-34354324 5.9e-05 5_[+1]_7 chr2:149874083-149874103 7.9e-05 8_[+1]_4 chr8:37637523-37637543 7.9e-05 2_[+1]_10 chr7:135486004-135486024 7.9e-05 2_[+1]_10 chr12:115100581-11510060 7.9e-05 3_[+1]_9 chr2:152893552-152893572 7.9e-05 7_[+1]_5 chr3:106954879-106954899 0.00011 2_[+1]_10 chr3:100181950-100181970 0.00011 5_[+1]_7 chr7:17809648-17809668 0.00011 6_[+1]_6 chr14:76517331-76517351 0.00011 1_[+1]_11 chr11:110072236-11007225 0.00013 4_[+1]_8 chr20:18613028-18613048 0.00013 5_[+1]_7 chr3:44365035-44365055 0.00016 [+1]_12 chr1:173400501-173400521 0.00016 7_[+1]_5 chr6:155249659-155249679 0.00016 [+1]_12 chr9:119499513-119499533 0.00016 [+1]_12 chr19:38393412-38393432 0.00022 4_[+1]_8 chr8:109930809-109930829 0.00022 1_[+1]_11 chrX:149940811-149940831 0.00022 3_[+1]_9 chr6:137592906-137592926 0.00022 10_[+1]_2 chr14:54006390-54006410 0.00026 5_[+1]_7 chr11:77939603-77939623 0.00036 11_[+1]_1 chr15:49154200-49154220 0.00036 7_[+1]_5 chr6:52281515-52281535 0.00038 6_[+1]_6 chr3:150439266-150439286 0.00038 6_[+1]_6 chr3:195980644-195980664 0.00042 1_[+1]_11 chr10:91553600-91553620 0.00043 2_[+1]_10 chr5:10452994-10453014 0.00043 2_[+1]_10 chr10:72309797-72309817 0.00049 4_[+1]_8 chr14:33045485-33045505 0.00049 1_[+1]_11 chr15:51942303-51942323 0.00049 4_[+1]_8 chr1:145421819-145421839 0.00049 1_[+1]_11 chr18:20393784-20393804 0.00049 2_[+1]_10 chr6:134245260-134245280 0.00049 3_[+1]_9 chr2:181969421-181969441 0.00049 10_[+1]_2 chr3:137787600-137787620 0.00057 4_[+1]_8 chr20:33462010-33462030 0.00057 10_[+1]_2 chr5:125992284-125992304 0.00057 2_[+1]_10 chr13:76450705-76450725 0.00057 12_[+1] chr4:82388730-82388750 0.00063 [+1]_12 chr15:42281885-42281905 0.00074 6_[+1]_6 chr3:59299259-59299279 0.00074 10_[+1]_2 chr15:44196158-44196178 0.00074 1_[+1]_11 chr4:119903117-119903137 0.00088 3_[+1]_9 chr6:30796437-30796457 0.00088 6_[+1]_6 chr13:95841779-95841799 0.00088 9_[+1]_3 chr20:17879311-17879331 0.00089 10_[+1]_2 chr6:52027921-52027941 0.00092 [+1]_12 chr22:37713062-37713082 0.0011 6_[+1]_6 chr17:19669953-19669973 0.0011 5_[+1]_7 chr1:66719184-66719204 0.0011 2_[+1]_10 chr5:169653031-169653051 0.0014 1_[+1]_11 chr3:5099636-5099656 0.0014 6_[+1]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRKGGCR MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGRKGGCR width=8 seqs=78 chr12:125667867-12566788 ( 10) AGATGGCA 1 chr22:20144689-20144709 ( 9) AGATGGCA 1 chr12:9901443-9901463 ( 3) AGATGGCA 1 chr14:71605900-71605920 ( 2) AGATGGCA 1 chrX:73075540-73075560 ( 3) AGATGGCA 1 chr15:55940747-55940767 ( 3) AGATGGCA 1 chr7:55709067-55709087 ( 1) AGATGGCA 1 chr3:185701483-185701503 ( 5) AGATGGCA 1 chr2:106721004-106721024 ( 8) AGGTGGCA 1 chr12:8697011-8697031 ( 2) AGGTGGCA 1 chr1:165687317-165687337 ( 5) AGGTGGCA 1 chr4:71467335-71467355 ( 2) AGGTGGCA 1 chr14:61092248-61092268 ( 9) AGGTGGCA 1 chr4:69364313-69364333 ( 5) AGGTGGCA 1 chr11:94887828-94887848 ( 3) AGGTGGCA 1 chr2:175327682-175327702 ( 6) AGAGGGCA 1 chr6:3279964-3279984 ( 5) AGAGGGCA 1 chr5:108017185-108017205 ( 1) AGAGGGCA 1 chr5:4879998-4880018 ( 1) AGAGGGCA 1 chr7:112190691-112190711 ( 3) AGAGGGCA 1 chr3:98321101-98321121 ( 1) AGAGGGCA 1 chr4:157090243-157090263 ( 7) AGAGGGCA 1 chr3:56736709-56736729 ( 8) AGAGGGCA 1 chr4:122113765-122113785 ( 2) AGAGGGCA 1 chr6:56224212-56224232 ( 2) AGAGGGCA 1 chr15:34354304-34354324 ( 6) AGAGGGCA 1 chr2:149874083-149874103 ( 9) AGATGGCG 1 chr8:37637523-37637543 ( 3) AGATGGCG 1 chr7:135486004-135486024 ( 3) AGATGGCG 1 chr12:115100581-11510060 ( 4) AGATGGCG 1 chr2:152893552-152893572 ( 8) AGATGGCG 1 chr3:106954879-106954899 ( 3) AGGGGGCA 1 chr3:100181950-100181970 ( 6) AGGGGGCA 1 chr7:17809648-17809668 ( 7) AGGGGGCA 1 chr14:76517331-76517351 ( 2) AGGGGGCA 1 chr11:110072236-11007225 ( 5) AGGTGGCG 1 chr20:18613028-18613048 ( 6) AGGTGGCG 1 chr3:44365035-44365055 ( 1) AGAGGGCG 1 chr1:173400501-173400521 ( 8) AGAGGGCG 1 chr6:155249659-155249679 ( 1) AGAGGGCG 1 chr9:119499513-119499533 ( 1) AGAGGGCG 1 chr19:38393412-38393432 ( 5) AGGGGGCG 1 chr8:109930809-109930829 ( 2) AGATGTCA 1 chrX:149940811-149940831 ( 4) AGGGGGCG 1 chr6:137592906-137592926 ( 11) AGATGTCA 1 chr14:54006390-54006410 ( 6) AGGTGTCA 1 chr11:77939603-77939623 ( 12) AGATGGTG 1 chr15:49154200-49154220 ( 8) AGATGGTG 1 chr6:52281515-52281535 ( 7) AGAGGGAA 1 chr3:150439266-150439286 ( 7) AGAGGGAA 1 chr3:195980644-195980664 ( 2) AGGGGTCA 1 chr10:91553600-91553620 ( 3) AGATGGAG 1 chr5:10452994-10453014 ( 3) AGATGGAG 1 chr10:72309797-72309817 ( 5) AGGTGGTG 1 chr14:33045485-33045505 ( 2) AGGTGGTG 1 chr15:51942303-51942323 ( 5) TGGTGGCA 1 chr1:145421819-145421839 ( 2) AGGTGGTG 1 chr18:20393784-20393804 ( 3) AGGTGGTG 1 chr6:134245260-134245280 ( 4) TGGTGGCA 1 chr2:181969421-181969441 ( 11) AGGTGGTG 1 chr3:137787600-137787620 ( 5) AGAGGTCG 1 chr20:33462010-33462030 ( 11) AGGGGGAA 1 chr5:125992284-125992304 ( 3) AGAGGTCG 1 chr13:76450705-76450725 ( 13) AGGGGGAA 1 chr4:82388730-82388750 ( 1) AGATGGCT 1 chr15:42281885-42281905 ( 7) TGGGGGCA 1 chr3:59299259-59299279 ( 11) TGGGGGCA 1 chr15:44196158-44196178 ( 2) AGGGGTCG 1 chr4:119903117-119903137 ( 4) TGAGGGCG 1 chr6:30796437-30796457 ( 7) AGGGGGAG 1 chr13:95841779-95841799 ( 10) ACATGGCA 1 chr20:17879311-17879331 ( 11) AGGTGTTA 1 chr6:52027921-52027941 ( 1) AGATGACA 1 chr22:37713062-37713082 ( 7) AGGGGGCT 1 chr17:19669953-19669973 ( 6) TGGGGGCG 1 chr1:66719184-66719204 ( 3) AGATGTTG 1 chr5:169653031-169653051 ( 2) AGAGGGCC 1 chr3:5099636-5099656 ( 7) ACGGGGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRKGGCR MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 6.82574 E= 2.8e-068 202 -1293 -1293 -142 -1293 -344 176 -1293 131 -1293 60 -1293 -1293 -1293 72 135 -1293 -1293 180 -1293 -414 -1293 160 -84 -134 151 -1293 -84 138 -444 37 -301 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRKGGCR MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 78 E= 2.8e-068 0.923077 0.000000 0.000000 0.076923 0.000000 0.025641 0.974359 0.000000 0.564103 0.000000 0.435897 0.000000 0.000000 0.000000 0.474359 0.525641 0.000000 0.000000 1.000000 0.000000 0.012821 0.000000 0.871795 0.115385 0.089744 0.794872 0.000000 0.115385 0.589744 0.012821 0.371795 0.025641 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRKGGCR MEME-1 regular expression -------------------------------------------------------------------------------- AG[AG][TG]GGC[AG] -------------------------------------------------------------------------------- Time 2.30 secs. ******************************************************************************** ******************************************************************************** MOTIF YGCCMYCT MEME-2 width = 8 sites = 56 llr = 409 E-value = 6.8e-040 ******************************************************************************** -------------------------------------------------------------------------------- Motif YGCCMYCT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :11:5::1 pos.-specific C 4:8a54a: probability G :8:::::: matrix T 611::6:9 bits 2.3 2.0 1.8 * ** 1.6 * ** Relative 1.4 * ** Entropy 1.1 * ** *** (10.5 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGCCCTCT consensus C AC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCCMYCT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:247650577-247650597 11 1.24e-05 AGGCTGATGT TGCCATCT AG chr17:53591540-53591560 13 1.24e-05 TTTCCTCTGG TGCCATCT chr1:104057729-104057749 8 1.24e-05 ACAAACT TGCCATCT AGTGA chr4:94685961-94685981 11 1.24e-05 GAGCAAATAC TGCCATCT TG chr4:36401569-36401589 3 2.77e-05 GA TGCCCTCT GGTGACAAAA chr8:96261092-96261112 11 2.77e-05 GGCTACAAAG TGCCCTCT GG chr1:230446492-230446512 9 2.77e-05 TCCTCTGC TGCCCTCT GCTG chr1:156195387-156195407 2 2.77e-05 C TGCCCTCT GGTGGACAGT chr4:57167819-57167839 12 2.77e-05 TTGGAAAGGC TGCCCTCT A chr12:51925866-51925886 7 2.77e-05 TATGCC TGCCCTCT GCTGGA chr5:149370513-149370533 10 2.77e-05 GTCCACCTG TGCCCTCT GGT chr8:48227983-48228003 7 2.77e-05 CTCTGC TGCCCTCT GTAGGT chr14:62304490-62304510 10 4.45e-05 GAGTCACCC TGCCACCT TGT chr8:42660565-42660585 9 4.45e-05 GCTTCCCC TGCCACCT ACTG chr14:93147581-93147601 6 4.45e-05 CCGCC TGCCACCT AGTGGCC chr14:62593765-62593785 5 4.45e-05 TGAG TGCCACCT AGAGTACA chr1:66153532-66153552 8 4.45e-05 GCTCTGC TGCCACCT GCTGG chr18:77288939-77288959 9 6.51e-05 GGAATTAA TGCCCCCT TATG chr12:94926758-94926778 9 6.51e-05 ACAAACTC TGCCCCCT GGCG chr6:51824738-51824758 8 8.19e-05 ACGTTGT CGCCATCT TGTGG chr5:71819992-71820012 10 1.03e-04 AGGAAGGGA CGCCCTCT GCT chr14:73371825-73371845 9 1.03e-04 CAATTGGG CGCCCTCT AGTG chr11:117924282-11792430 9 1.03e-04 AACCTGAG CGCCCTCT GGTG chr11:14271062-14271082 11 1.03e-04 ATGGCTTGGG CGCCCTCT CG chr3:186258464-186258484 11 1.25e-04 GGCATTATGC CGCCACCT TG chr6:25018388-25018408 5 1.25e-04 GCGG CGCCACCT GATGGTTA chr4:38677326-38677346 8 1.25e-04 TTTAGTG CGCCACCT ACTGG chr1:43539472-43539492 9 1.53e-04 GGAGTTGC CGCCCCCT GGTG chr3:97742253-97742273 6 1.53e-04 ACTGG CGCCCCCT GGTGGCC chr1:111003049-111003069 10 1.83e-04 GGTGTCTGC TACCATCT AGT chr14:73938980-73939000 7 2.32e-04 TCAAAG TGACATCT AGTGGT chr9:128137165-128137185 10 2.32e-04 TTCCTTGGG TGACATCT TGT chr9:103358061-103358081 12 2.32e-04 AGCTCAAGGC TGACATCT A chr7:81586028-81586048 12 2.65e-04 ATGGCCACAT CTCCATCT A chr10:26846175-26846195 12 2.65e-04 AAGTGTTTGC TGTCATCT G chr6:136547531-136547551 13 3.18e-04 GGTGTTATAC TGTCCTCT chr1:51655274-51655294 6 3.18e-04 AAGGG CTCCCTCT GTTGGTT chr5:157602122-157602142 8 3.18e-04 ATGGCGC TGTCCTCT AAGGA chr18:33864831-33864851 9 3.18e-04 TCCAAGTC TACCACCT GCTG chr14:36156709-36156729 8 3.52e-04 CAAATAC TGCCCTCA GGTGG chr11:102483860-10248388 8 3.95e-04 GTGACGA TGACACCT GAAGG chr14:102237461-10223748 2 4.40e-04 T CTCCACCT GGGGGAGTGA chr4:105781854-105781874 13 4.40e-04 GAAAGCATAT TGACCCCT chr12:14320139-14320159 13 4.40e-04 AGTGCACTGG CTCCACCT chr18:56431689-56431709 10 5.08e-04 AGTCTCTTG CTCCCCCT CCT chr19:52160369-52160389 12 5.08e-04 AGCCCAAGGG CTCCCCCT G chr8:28181994-28182014 7 5.08e-04 AGCCAC TGCCACCA TGTGGC chr2:99453714-99453734 4 5.08e-04 TGG TGCCACCA AGTGGCCAG chr8:126656952-126656972 12 6.11e-04 AACTCAGCAG CACCACCT G chr1:111326102-111326122 8 6.56e-04 ACTCTGT CGCCCTCA TGTGG chr2:38059910-38059930 7 6.56e-04 caatgg caccccct ggtgtC chr1:200457995-200458015 6 6.56e-04 CTCAA CACCCCCT GGTGGAG chr1:202541038-202541058 12 6.56e-04 GATCGTCCAG CACCCCCT A chr4:70747066-70747086 12 8.89e-04 AGTATCCTGC TGCTCTCT A chr7:86941777-86941797 5 1.14e-03 GTCG CTCCATCA CAGCTGGT chr3:69210932-69210952 6 1.22e-03 CTAGG TGTCCTCA TTGACCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCCMYCT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:247650577-247650597 1.2e-05 10_[+2]_2 chr17:53591540-53591560 1.2e-05 12_[+2] chr1:104057729-104057749 1.2e-05 7_[+2]_5 chr4:94685961-94685981 1.2e-05 10_[+2]_2 chr4:36401569-36401589 2.8e-05 2_[+2]_10 chr8:96261092-96261112 2.8e-05 10_[+2]_2 chr1:230446492-230446512 2.8e-05 8_[+2]_4 chr1:156195387-156195407 2.8e-05 1_[+2]_11 chr4:57167819-57167839 2.8e-05 11_[+2]_1 chr12:51925866-51925886 2.8e-05 6_[+2]_6 chr5:149370513-149370533 2.8e-05 9_[+2]_3 chr8:48227983-48228003 2.8e-05 6_[+2]_6 chr14:62304490-62304510 4.4e-05 9_[+2]_3 chr8:42660565-42660585 4.4e-05 8_[+2]_4 chr14:93147581-93147601 4.4e-05 5_[+2]_7 chr14:62593765-62593785 4.4e-05 4_[+2]_8 chr1:66153532-66153552 4.4e-05 7_[+2]_5 chr18:77288939-77288959 6.5e-05 8_[+2]_4 chr12:94926758-94926778 6.5e-05 8_[+2]_4 chr6:51824738-51824758 8.2e-05 7_[+2]_5 chr5:71819992-71820012 0.0001 9_[+2]_3 chr14:73371825-73371845 0.0001 8_[+2]_4 chr11:117924282-11792430 0.0001 8_[+2]_4 chr11:14271062-14271082 0.0001 10_[+2]_2 chr3:186258464-186258484 0.00013 10_[+2]_2 chr6:25018388-25018408 0.00013 4_[+2]_8 chr4:38677326-38677346 0.00013 7_[+2]_5 chr1:43539472-43539492 0.00015 8_[+2]_4 chr3:97742253-97742273 0.00015 5_[+2]_7 chr1:111003049-111003069 0.00018 9_[+2]_3 chr14:73938980-73939000 0.00023 6_[+2]_6 chr9:128137165-128137185 0.00023 9_[+2]_3 chr9:103358061-103358081 0.00023 11_[+2]_1 chr7:81586028-81586048 0.00027 11_[+2]_1 chr10:26846175-26846195 0.00027 11_[+2]_1 chr6:136547531-136547551 0.00032 12_[+2] chr1:51655274-51655294 0.00032 5_[+2]_7 chr5:157602122-157602142 0.00032 7_[+2]_5 chr18:33864831-33864851 0.00032 8_[+2]_4 chr14:36156709-36156729 0.00035 7_[+2]_5 chr11:102483860-10248388 0.00039 7_[+2]_5 chr14:102237461-10223748 0.00044 1_[+2]_11 chr4:105781854-105781874 0.00044 12_[+2] chr12:14320139-14320159 0.00044 12_[+2] chr18:56431689-56431709 0.00051 9_[+2]_3 chr19:52160369-52160389 0.00051 11_[+2]_1 chr8:28181994-28182014 0.00051 6_[+2]_6 chr2:99453714-99453734 0.00051 3_[+2]_9 chr8:126656952-126656972 0.00061 11_[+2]_1 chr1:111326102-111326122 0.00066 7_[+2]_5 chr2:38059910-38059930 0.00066 6_[+2]_6 chr1:200457995-200458015 0.00066 5_[+2]_7 chr1:202541038-202541058 0.00066 11_[+2]_1 chr4:70747066-70747086 0.00089 11_[+2]_1 chr7:86941777-86941797 0.0011 4_[+2]_8 chr3:69210932-69210952 0.0012 5_[+2]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCCMYCT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YGCCMYCT width=8 seqs=56 chr1:247650577-247650597 ( 11) TGCCATCT 1 chr17:53591540-53591560 ( 13) TGCCATCT 1 chr1:104057729-104057749 ( 8) TGCCATCT 1 chr4:94685961-94685981 ( 11) TGCCATCT 1 chr4:36401569-36401589 ( 3) TGCCCTCT 1 chr8:96261092-96261112 ( 11) TGCCCTCT 1 chr1:230446492-230446512 ( 9) TGCCCTCT 1 chr1:156195387-156195407 ( 2) TGCCCTCT 1 chr4:57167819-57167839 ( 12) TGCCCTCT 1 chr12:51925866-51925886 ( 7) TGCCCTCT 1 chr5:149370513-149370533 ( 10) TGCCCTCT 1 chr8:48227983-48228003 ( 7) TGCCCTCT 1 chr14:62304490-62304510 ( 10) TGCCACCT 1 chr8:42660565-42660585 ( 9) TGCCACCT 1 chr14:93147581-93147601 ( 6) TGCCACCT 1 chr14:62593765-62593785 ( 5) TGCCACCT 1 chr1:66153532-66153552 ( 8) TGCCACCT 1 chr18:77288939-77288959 ( 9) TGCCCCCT 1 chr12:94926758-94926778 ( 9) TGCCCCCT 1 chr6:51824738-51824758 ( 8) CGCCATCT 1 chr5:71819992-71820012 ( 10) CGCCCTCT 1 chr14:73371825-73371845 ( 9) CGCCCTCT 1 chr11:117924282-11792430 ( 9) CGCCCTCT 1 chr11:14271062-14271082 ( 11) CGCCCTCT 1 chr3:186258464-186258484 ( 11) CGCCACCT 1 chr6:25018388-25018408 ( 5) CGCCACCT 1 chr4:38677326-38677346 ( 8) CGCCACCT 1 chr1:43539472-43539492 ( 9) CGCCCCCT 1 chr3:97742253-97742273 ( 6) CGCCCCCT 1 chr1:111003049-111003069 ( 10) TACCATCT 1 chr14:73938980-73939000 ( 7) TGACATCT 1 chr9:128137165-128137185 ( 10) TGACATCT 1 chr9:103358061-103358081 ( 12) TGACATCT 1 chr7:81586028-81586048 ( 12) CTCCATCT 1 chr10:26846175-26846195 ( 12) TGTCATCT 1 chr6:136547531-136547551 ( 13) TGTCCTCT 1 chr1:51655274-51655294 ( 6) CTCCCTCT 1 chr5:157602122-157602142 ( 8) TGTCCTCT 1 chr18:33864831-33864851 ( 9) TACCACCT 1 chr14:36156709-36156729 ( 8) TGCCCTCA 1 chr11:102483860-10248388 ( 8) TGACACCT 1 chr14:102237461-10223748 ( 2) CTCCACCT 1 chr4:105781854-105781874 ( 13) TGACCCCT 1 chr12:14320139-14320159 ( 13) CTCCACCT 1 chr18:56431689-56431709 ( 10) CTCCCCCT 1 chr19:52160369-52160389 ( 12) CTCCCCCT 1 chr8:28181994-28182014 ( 7) TGCCACCA 1 chr2:99453714-99453734 ( 4) TGCCACCA 1 chr8:126656952-126656972 ( 12) CACCACCT 1 chr1:111326102-111326122 ( 8) CGCCCTCA 1 chr2:38059910-38059930 ( 7) CACCCCCT 1 chr1:200457995-200458015 ( 6) CACCCCCT 1 chr1:202541038-202541058 ( 12) CACCCCCT 1 chr4:70747066-70747086 ( 12) TGCTCTCT 1 chr7:86941777-86941797 ( 5) CTCCATCA 1 chr3:69210932-69210952 ( 6) TGTCCTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCCMYCT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.52089 E= 6.8e-040 -1245 49 -1245 156 -108 -1245 142 -72 -134 159 -1245 -153 -1245 181 -1245 -353 109 89 -1245 -1245 -1245 68 -1245 142 -1245 184 -1245 -1245 -108 -1245 -1245 211 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCCMYCT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 56 E= 6.8e-040 0.000000 0.392857 0.000000 0.607143 0.107143 0.000000 0.767857 0.125000 0.089286 0.839286 0.000000 0.071429 0.000000 0.982143 0.000000 0.017857 0.482143 0.517857 0.000000 0.000000 0.000000 0.446429 0.000000 0.553571 0.000000 1.000000 0.000000 0.000000 0.107143 0.000000 0.000000 0.892857 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCCMYCT MEME-2 regular expression -------------------------------------------------------------------------------- [TC]GCC[CA][TC]CT -------------------------------------------------------------------------------- Time 3.84 secs. ******************************************************************************** ******************************************************************************** MOTIF KAGYGCCA MEME-3 width = 8 sites = 10 llr = 85 E-value = 5.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif KAGYGCCA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :7:::::a pos.-specific C :::4:aa: probability G 539:a::: matrix T 5:16:::: bits 2.3 2.0 * 1.8 **** 1.6 **** Relative 1.4 * **** Entropy 1.1 ******** (12.3 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GAGTGCCA consensus TG C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KAGYGCCA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr10:97123233-97123253 13 3.39e-05 GCTTGTTCTT GAGTGCCA chr6:104973769-104973789 12 3.39e-05 GCCTATGCAG GAGTGCCA T chr3:99973192-99973212 13 3.39e-05 GGAGTTACAT GAGTGCCA chr4:122229118-122229138 13 5.30e-05 TGTGCAGCAA TAGCGCCA chr18:47385271-47385291 13 7.97e-05 GCCAGGGAGG GAGCGCCA chr13:75794028-75794048 11 7.97e-05 AGCGGGGGCG GAGCGCCA TC chr5:14648849-14648869 13 9.76e-05 CAAGGTCTTG TGGTGCCA chrX:130050982-130051002 13 9.76e-05 TCGCATTCTC TGGTGCCA chr9:21814046-21814066 1 1.47e-04 . TGGCGCCA ACATCAAAGC chr2:122476474-122476494 11 1.57e-04 GCCTGGGATC TATTGCCA CC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KAGYGCCA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:97123233-97123253 3.4e-05 12_[+3] chr6:104973769-104973789 3.4e-05 11_[+3]_1 chr3:99973192-99973212 3.4e-05 12_[+3] chr4:122229118-122229138 5.3e-05 12_[+3] chr18:47385271-47385291 8e-05 12_[+3] chr13:75794028-75794048 8e-05 10_[+3]_2 chr5:14648849-14648869 9.8e-05 12_[+3] chrX:130050982-130051002 9.8e-05 12_[+3] chr9:21814046-21814066 0.00015 [+3]_12 chr2:122476474-122476494 0.00016 10_[+3]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KAGYGCCA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KAGYGCCA width=8 seqs=10 chr10:97123233-97123253 ( 13) GAGTGCCA 1 chr6:104973769-104973789 ( 12) GAGTGCCA 1 chr3:99973192-99973212 ( 13) GAGTGCCA 1 chr4:122229118-122229138 ( 13) TAGCGCCA 1 chr18:47385271-47385291 ( 13) GAGCGCCA 1 chr13:75794028-75794048 ( 11) GAGCGCCA 1 chr5:14648849-14648869 ( 13) TGGTGCCA 1 chrX:130050982-130051002 ( 13) TGGTGCCA 1 chr9:21814046-21814066 ( 1) TGGCGCCA 1 chr2:122476474-122476494 ( 11) TATTGCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KAGYGCCA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.5921 E= 5.1e+003 -997 -997 80 128 162 -997 6 -997 -997 -997 164 -104 -997 52 -997 154 -997 -997 180 -997 -997 184 -997 -997 -997 184 -997 -997 214 -997 -997 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KAGYGCCA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 5.1e+003 0.000000 0.000000 0.500000 0.500000 0.700000 0.000000 0.300000 0.000000 0.000000 0.000000 0.900000 0.100000 0.000000 0.400000 0.000000 0.600000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KAGYGCCA MEME-3 regular expression -------------------------------------------------------------------------------- [GT][AG]G[TC]GCCA -------------------------------------------------------------------------------- Time 4.50 secs. ******************************************************************************** ******************************************************************************** MOTIF ATTGGCTT MEME-4 width = 8 sites = 2 llr = 23 E-value = 5.7e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATTGGCTT MEME-4 Description -------------------------------------------------------------------------------- Simplified A a::::::: pos.-specific C :::::a:: probability G :::aa::: matrix T :aa:::aa bits 2.3 ** ** 2.0 *** ** 1.8 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.1 ******** (16.7 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ATTGGCTT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTGGCTT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr16:72536188-72536208 12 9.46e-06 CCACAGCCTC ATTGGCTT G chr16:68834319-68834339 7 9.46e-06 AGGGCT ATTGGCTT CAGAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTGGCTT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:72536188-72536208 9.5e-06 11_[+4]_1 chr16:68834319-68834339 9.5e-06 6_[+4]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTGGCTT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATTGGCTT width=8 seqs=2 chr16:72536188-72536208 ( 12) ATTGGCTT 1 chr16:68834319-68834339 ( 7) ATTGGCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTGGCTT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.6653 E= 5.7e+003 213 -765 -765 -765 -765 -765 -765 227 -765 -765 -765 227 -765 -765 179 -765 -765 -765 179 -765 -765 184 -765 -765 -765 -765 -765 227 -765 -765 -765 227 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTGGCTT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 5.7e+003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTGGCTT MEME-4 regular expression -------------------------------------------------------------------------------- ATTGGCTT -------------------------------------------------------------------------------- Time 5.23 secs. ******************************************************************************** ******************************************************************************** MOTIF TCTATGST MEME-5 width = 8 sites = 5 llr = 50 E-value = 3.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTATGST MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::6:::: pos.-specific C :a::::4: probability G :::2:a6: matrix T a:a2a::a bits 2.3 * * * * 2.0 * * * * 1.8 *** ** * 1.6 *** ** * Relative 1.4 *** ** * Entropy 1.1 *** ** * (14.3 bits) 0.9 *** **** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TCTATGGT consensus G C sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTATGST MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr13:42908393-42908413 11 9.46e-06 AGCAACACAG TCTATGGT TT chr2:58133464-58133484 1 1.86e-05 . TCTATGCT GTTGCACTAA chr5:143204848-143204868 12 1.86e-05 CAAGCACAGC TCTATGCT G chr10:125319016-12531903 5 2.72e-05 AGTG TCTTTGGT GGGGAAAG chr5:94186137-94186157 4 3.92e-05 GCT TCTGTGGT GCAAGATTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTATGST MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr13:42908393-42908413 9.5e-06 10_[+5]_2 chr2:58133464-58133484 1.9e-05 [+5]_12 chr5:143204848-143204868 1.9e-05 11_[+5]_1 chr10:125319016-12531903 2.7e-05 4_[+5]_8 chr5:94186137-94186157 3.9e-05 3_[+5]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTATGST MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTATGST width=8 seqs=5 chr13:42908393-42908413 ( 11) TCTATGGT 1 chr2:58133464-58133484 ( 1) TCTATGCT 1 chr5:143204848-143204868 ( 12) TCTATGCT 1 chr10:125319016-12531903 ( 5) TCTTTGGT 1 chr5:94186137-94186157 ( 4) TCTGTGGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTATGST MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.59397 E= 3.3e+003 -897 -897 -897 228 -897 184 -897 -897 -897 -897 -897 228 140 -897 -52 -4 -897 -897 -897 228 -897 -897 179 -897 -897 52 106 -897 -897 -897 -897 228 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTATGST MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 3.3e+003 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.600000 0.000000 0.200000 0.200000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.400000 0.600000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTATGST MEME-5 regular expression -------------------------------------------------------------------------------- TCT[AGT]TG[GC]T -------------------------------------------------------------------------------- Time 5.88 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:148511598-148511618 6.08e-01 20 chr9:103358061-103358081 1.33e-02 20 chr1:66153532-66153552 5.52e-04 7_[+2(4.45e-05)]_5 chr3:150439266-150439286 2.33e-01 20 chr4:122229118-122229138 2.67e-02 12_[+3(5.30e-05)] chr3:195980644-195980664 7.15e-02 20 chr3:185701483-185701503 1.29e-02 4_[+1(1.61e-05)]_8 chr15:34354304-34354324 5.65e-02 5_[+1(5.89e-05)]_7 chr12:14320139-14320159 4.97e-03 20 chr2:152893552-152893572 4.73e-02 7_[+1(7.93e-05)]_5 chr12:53746569-53746589 9.63e-01 20 chr3:24040610-24040630 2.45e-01 20 chr10:11767374-11767394 9.82e-02 20 chr2:227994719-227994739 5.78e-01 20 chr4:105781854-105781874 6.05e-02 20 chr11:94887828-94887848 1.96e-02 2_[+1(3.64e-05)]_10 chr11:116976859-11697687 1.51e-01 20 chr3:32551799-32551819 9.90e-01 20 chr7:55709067-55709087 1.23e-03 [+1(1.61e-05)]_12 chr4:38677326-38677346 1.30e-02 20 chr7:115778445-115778465 9.56e-01 20 chr11:14271062-14271082 7.93e-03 20 chr6:56224212-56224232 1.27e-02 1_[+1(5.89e-05)]_11 chr11:102483860-10248388 1.21e-01 20 chr11:6400677-6400697 3.73e-02 20 chr1:66719184-66719204 5.42e-02 20 chr3:141171041-141171061 7.56e-02 20 chr9:128137165-128137185 1.08e-03 20 chr8:48227983-48228003 5.45e-03 6_[+2(2.77e-05)]_6 chr5:10452994-10453014 2.50e-03 20 chr14:36156709-36156729 9.22e-03 20 chr4:82388730-82388750 1.55e-02 20 chr4:122821729-122821749 8.51e-02 20 chr11:33992730-33992750 3.99e-01 20 chr18:59798737-59798757 8.01e-01 20 chr6:137592906-137592926 9.43e-02 20 chr4:94685961-94685981 3.69e-04 10_[+2(1.24e-05)]_2 chr4:146155440-146155460 7.23e-02 20 chr4:122113765-122113785 6.78e-03 1_[+1(5.89e-05)]_11 chr12:6574807-6574827 5.50e-01 20 chr2:213551215-213551235 8.64e-02 20 chr2:122476474-122476494 3.68e-03 20 chr4:69364313-69364333 3.61e-03 4_[+1(3.64e-05)]_8 chr4:27012157-27012177 9.60e-02 20 chr3:115411915-115411935 6.05e-01 20 chr14:61092248-61092268 1.96e-02 8_[+1(3.64e-05)]_4 chr2:181969421-181969441 1.48e-02 20 chr2:198243303-198243323 1.54e-01 20 chr3:130478761-130478781 8.34e-01 20 chr1:152898743-152898763 6.05e-02 20 chr6:134245260-134245280 2.62e-02 20 chr17:47393029-47393049 7.83e-02 20 chr6:47065271-47065291 7.99e-01 20 chr6:25018388-25018408 1.02e-03 20 chr14:76517331-76517351 5.13e-03 20 chr9:92218080-92218100 3.42e-01 20 chr9:1605130-1605150 6.03e-01 20 chr12:94926758-94926778 5.93e-02 8_[+2(6.51e-05)]_4 chr1:94095215-94095235 5.24e-01 20 chr4:3347973-3347993 4.09e-01 20 chr18:33864831-33864851 1.58e-01 20 chr14:62593765-62593785 6.78e-05 1_[+3(3.39e-05)]_11 chr16:80561391-80561411 4.47e-01 20 chr17:19669953-19669973 9.89e-02 20 chr18:20393784-20393804 6.64e-03 20 chr13:76450705-76450725 6.10e-02 20 chr11:109724091-10972411 8.95e-01 20 chr5:149370513-149370533 3.48e-03 9_[+2(2.77e-05)]_3 chr15:44196158-44196178 1.19e-03 20 chr4:71467335-71467355 4.31e-04 1_[+1(3.64e-05)]_11 chr4:70747066-70747086 1.68e-01 20 chr10:92671519-92671539 7.48e-01 20 chr1:104057729-104057749 1.75e-03 7_[+2(1.24e-05)]_5 chr14:67894021-67894041 7.37e-01 20 chr13:75794028-75794048 4.15e-02 10_[+3(7.97e-05)]_2 chr5:94186137-94186157 3.53e-03 3_[+5(3.92e-05)]_9 chr3:59299259-59299279 1.31e-01 20 chr5:138598496-138598516 2.31e-01 20 chr14:102237461-10223748 3.53e-02 20 chr15:49154200-49154220 4.34e-03 20 chr3:99973192-99973212 1.01e-02 12_[+3(3.39e-05)] chr18:52902048-52902068 8.49e-01 20 chr1:145421819-145421839 1.28e-02 20 chr12:44276550-44276570 2.40e-01 20 chr10:26846175-26846195 4.81e-04 20 chr6:144426226-144426246 8.84e-01 20 chr17:53591540-53591560 2.96e-06 12_[+2(1.24e-05)] chr6:91189207-91189227 2.00e-01 20 chr14:70285602-70285622 5.90e-01 20 chr15:55940747-55940767 3.46e-04 2_[+1(1.61e-05)]_10 chr13:61005426-61005446 2.39e-01 20 chr3:56736709-56736729 2.23e-02 7_[+1(5.89e-05)]_5 chr1:202541038-202541058 1.41e-01 20 chr5:125992284-125992304 3.63e-02 20 chr7:81586028-81586048 3.67e-02 20 chr5:157602122-157602142 1.80e-02 20 chr1:200457995-200458015 2.33e-02 20 chr1:198740892-198740912 9.97e-02 20 chrX:130050982-130051002 5.36e-06 8_[+5(8.50e-05)]_4 chr15:51942303-51942323 3.59e-02 20 chr9:119499513-119499533 3.00e-02 20 chr12:51925866-51925886 5.72e-03 6_[+2(2.77e-05)]_6 chr5:52244506-52244526 1.30e-01 20 chr8:126656952-126656972 1.46e-01 20 chr4:157090243-157090263 5.05e-02 6_[+1(5.89e-05)]_6 chr16:68834319-68834339 1.68e-03 6_[+4(9.46e-06)]_6 chr12:122884201-12288422 1.65e-01 20 chr8:82147656-82147676 9.65e-02 20 chr22:37713062-37713082 1.31e-01 20 chr1:247650577-247650597 1.01e-05 10_[+2(1.24e-05)]_2 chr11:63246466-63246486 3.84e-01 20 chr10:64004938-64004958 9.77e-01 20 chrX:149940811-149940831 1.09e-01 20 chr13:95841779-95841799 1.05e-01 20 chr7:17809648-17809668 4.94e-02 20 chr8:28451650-28451670 5.59e-01 20 chr3:141280464-141280484 3.71e-02 20 chr1:110319642-110319662 9.06e-01 20 chr4:57167819-57167839 9.94e-03 11_[+2(2.77e-05)]_1 chr14:93147581-93147601 1.51e-02 5_[+2(4.45e-05)]_7 chrX:73075540-73075560 1.41e-02 2_[+1(1.61e-05)]_10 chr3:69210932-69210952 1.21e-02 20 chr2:208610960-208610980 9.99e-02 20 chr9:21814046-21814066 1.22e-02 20 chr13:42908393-42908413 1.01e-02 10_[+5(9.46e-06)]_2 chr20:937265-937285 2.58e-01 20 chr2:65867843-65867863 8.57e-01 20 chr10:33297810-33297830 3.10e-01 20 chr3:97742253-97742273 5.56e-04 20 chr5:14648849-14648869 4.10e-03 12_[+3(9.76e-05)] chr3:73552005-73552025 4.51e-02 20 chr3:194033619-194033639 2.84e-01 20 chr3:98321101-98321121 3.58e-02 [+1(5.89e-05)]_12 chr12:115100581-11510060 1.69e-02 3_[+1(7.93e-05)]_9 chr20:17879311-17879331 9.49e-02 20 chr6:52027921-52027941 1.06e-01 20 chr3:73135314-73135334 7.45e-01 20 chr3:5099636-5099656 4.60e-01 20 chr6:155249659-155249679 1.63e-02 20 chr8:42547823-42547843 2.44e-01 20 chr18:77141013-77141033 9.66e-01 20 chr14:71605900-71605920 2.03e-02 1_[+1(1.61e-05)]_11 chr14:33045485-33045505 5.93e-02 20 chr3:100181950-100181970 1.85e-02 20 chr1:205626838-205626858 2.46e-02 20 chr7:135486004-135486024 1.67e-04 2_[+1(7.93e-05)]_10 chr15:42281885-42281905 1.07e-01 20 chr6:104973769-104973789 6.04e-03 11_[+3(3.39e-05)]_1 chr5:154029932-154029952 7.53e-01 20 chr10:97123233-97123253 4.80e-03 12_[+3(3.39e-05)] chr16:72536188-72536208 2.56e-03 11_[+4(9.46e-06)]_1 chr3:186258464-186258484 1.15e-02 20 chr6:52281515-52281535 3.21e-01 20 chr10:125319016-12531903 8.07e-04 4_[+5(2.72e-05)]_8 chr2:38059910-38059930 3.87e-02 20 chr13:103792802-10379282 5.35e-02 20 chr1:43539472-43539492 2.60e-02 20 chr1:182366017-182366037 4.93e-01 20 chr5:89561255-89561275 8.92e-01 20 chr7:112190691-112190711 2.11e-02 2_[+1(5.89e-05)]_10 chr10:33084701-33084721 6.51e-01 20 chr6:111003730-111003750 8.18e-01 20 chr1:156195387-156195407 5.54e-04 1_[+2(2.77e-05)]_11 chr6:30796437-30796457 1.47e-01 20 chr12:48936273-48936293 7.77e-01 20 chr18:12934649-12934669 2.93e-02 20 chr1:111003049-111003069 7.32e-03 20 chr11:63403494-63403514 1.28e-01 20 chr1:40439338-40439358 4.24e-01 20 chr8:42660565-42660585 3.29e-02 8_[+2(4.45e-05)]_4 chr21:35975505-35975525 1.05e-01 20 chr2:99453714-99453734 8.65e-04 [+3(9.76e-05)]_12 chr1:25015218-25015238 7.71e-01 20 chr8:28181994-28182014 5.77e-02 20 chr10:91553600-91553620 1.54e-01 20 chr5:143204848-143204868 2.01e-02 11_[+5(1.86e-05)]_1 chr11:117924282-11792430 7.00e-04 20 chr5:4879998-4880018 5.13e-02 [+1(5.89e-05)]_12 chr20:18613028-18613048 8.95e-02 20 chr20:33462010-33462030 1.82e-01 20 chr10:61385960-61385980 9.37e-01 20 chr10:64353944-64353964 2.87e-01 20 chr5:169653031-169653051 6.50e-02 20 chr1:165687317-165687337 8.21e-03 4_[+1(3.64e-05)]_8 chr8:109930809-109930829 9.59e-02 20 chr8:8527391-8527411 2.79e-01 20 chr11:46911348-46911368 6.06e-01 20 chr12:9901443-9901463 8.98e-03 2_[+1(1.61e-05)]_10 chr11:12303557-12303577 1.12e-01 20 chr20:39597553-39597573 7.74e-01 20 chr14:54006390-54006410 2.45e-02 20 chr1:173400501-173400521 6.78e-02 20 chr10:85631407-85631427 8.13e-01 20 chr19:52160369-52160389 6.41e-02 20 chr8:37637523-37637543 1.07e-04 2_[+1(7.93e-05)]_10 chr21:36003019-36003039 1.72e-01 20 chr5:108017185-108017205 8.89e-04 [+1(5.89e-05)]_12 chr12:8697011-8697031 2.47e-03 1_[+1(3.64e-05)]_11 chr9:74896027-74896047 2.37e-01 20 chr6:3279964-3279984 6.35e-02 4_[+1(5.89e-05)]_8 chr11:75156538-75156558 2.78e-01 20 chr1:230446492-230446512 2.62e-03 8_[+2(2.77e-05)]_4 chr4:119903117-119903137 3.45e-02 20 chr19:38393412-38393432 2.50e-02 20 chr2:197318478-197318498 1.29e-01 20 chr22:46512552-46512572 4.79e-01 20 chr2:106721004-106721024 1.68e-02 7_[+1(3.64e-05)]_5 chr8:96261092-96261112 4.52e-03 10_[+2(2.77e-05)]_2 chr2:58133464-58133484 6.04e-03 [+5(1.86e-05)]_12 chr3:194193199-194193219 4.38e-02 20 chr22:20144689-20144709 3.31e-04 8_[+1(1.61e-05)]_4 chr14:62304490-62304510 6.24e-02 9_[+2(4.45e-05)]_3 chr6:51824738-51824758 1.37e-03 7_[+2(8.19e-05)]_5 chr2:149874083-149874103 1.06e-04 8_[+1(7.93e-05)]_4 chr3:137787600-137787620 8.15e-02 20 chr13:96056708-96056728 5.91e-02 20 chr14:73938980-73939000 3.85e-03 20 chr7:86941777-86941797 1.25e-01 20 chr3:106954879-106954899 8.40e-02 20 chr5:40688398-40688418 6.56e-01 20 chr3:187465960-187465980 8.01e-01 20 chr1:93459836-93459856 9.35e-01 20 chr2:191247775-191247795 9.12e-02 20 chr12:125667867-12566788 1.28e-02 9_[+1(1.61e-05)]_3 chr3:196336329-196336349 7.17e-01 20 chr11:110072236-11007225 1.87e-02 20 chr11:77939603-77939623 6.29e-03 20 chr3:98833587-98833607 5.73e-01 20 chr18:56431689-56431709 2.83e-02 20 chr18:47385271-47385291 5.05e-02 12_[+3(7.97e-05)] chr1:111326102-111326122 1.39e-02 20 chr1:51655274-51655294 1.23e-02 20 chr3:136732880-136732900 3.27e-01 20 chr2:175327682-175327702 1.09e-01 5_[+1(5.89e-05)]_7 chr18:60650064-60650084 1.67e-01 20 chr6:158642087-158642107 9.57e-01 20 chr15:75242879-75242899 5.52e-01 20 chr16:75233409-75233429 7.04e-01 20 chr4:36401569-36401589 2.57e-05 2_[+2(2.77e-05)]_10 chr10:72309797-72309817 3.60e-03 7_[+3(9.76e-05)]_5 chr20:20549419-20549439 8.52e-02 20 chr6:136547531-136547551 7.10e-03 20 chr18:77288939-77288959 1.53e-02 8_[+2(6.51e-05)]_4 chr14:73371825-73371845 1.99e-03 20 chr12:67082796-67082816 9.47e-01 20 chr3:192162465-192162485 8.38e-01 20 chr5:71819992-71820012 5.87e-03 20 chr7:144089034-144089054 8.57e-01 20 chr3:44365035-44365055 6.68e-02 20 chr6:46058044-46058064 8.65e-02 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n04.farnam.hpc.yale.internal ********************************************************************************