******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/PBX3.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr19:47220376-47220396 1.0000 20 chr6:94129353-94129373 1.0000 20 chr4:102268860-102268880 1.0000 20 chr5:139780735-139780755 1.0000 20 chr17:79008681-79008701 1.0000 20 chr1:155057902-155057922 1.0000 20 chr14:91882412-91882432 1.0000 20 chr2:9563092-9563112 1.0000 20 chr1:247242169-247242189 1.0000 20 chr19:12075740-12075760 1.0000 20 chrX:1611065-1611085 1.0000 20 chrX:14057685-14057705 1.0000 20 chr9:119449530-119449550 1.0000 20 chr6:109330822-109330842 1.0000 20 chr17:58679464-58679484 1.0000 20 chr19:12267632-12267652 1.0000 20 chr1:7843989-7844009 1.0000 20 chr2:219824269-219824289 1.0000 20 chr22:25632025-25632045 1.0000 20 chr2:222437071-222437091 1.0000 20 chrX:74493842-74493862 1.0000 20 chr11:118799359-11879937 1.0000 20 chr2:43864360-43864380 1.0000 20 chr2:196941701-196941721 1.0000 20 chr15:44487567-44487587 1.0000 20 chr17:33570001-33570021 1.0000 20 chr16:84538290-84538310 1.0000 20 chr19:19143362-19143382 1.0000 20 chrX:47497053-47497073 1.0000 20 chr8:80680168-80680188 1.0000 20 chr19:56623125-56623145 1.0000 20 chr12:6663465-6663485 1.0000 20 chr5:179719089-179719109 1.0000 20 chr10:102790975-10279099 1.0000 20 chr5:96144123-96144143 1.0000 20 chr21:32931813-32931833 1.0000 20 chr19:19843991-19844011 1.0000 20 chr6:116937495-116937515 1.0000 20 chr5:65892133-65892153 1.0000 20 chr7:99798060-99798080 1.0000 20 chr19:4867718-4867738 1.0000 20 chrX:80377256-80377276 1.0000 20 chr1:164528105-164528125 1.0000 20 chr1:167691130-167691150 1.0000 20 chr19:1041093-1041113 1.0000 20 chr2:45168751-45168771 1.0000 20 chr1:185285424-185285444 1.0000 20 chr1:200379255-200379275 1.0000 20 chr11:64490722-64490742 1.0000 20 chr2:240322715-240322735 1.0000 20 chr6:15399027-15399047 1.0000 20 chr19:18654433-18654453 1.0000 20 chr10:102802618-10280263 1.0000 20 chr6:62996217-62996237 1.0000 20 chr20:17662988-17663008 1.0000 20 chr13:44716203-44716223 1.0000 20 chr19:11909282-11909302 1.0000 20 chr6:32143905-32143925 1.0000 20 chr15:43785396-43785416 1.0000 20 chr17:15796163-15796183 1.0000 20 chr6:132834315-132834335 1.0000 20 chr1:10270511-10270531 1.0000 20 chr13:110439028-11043904 1.0000 20 chr22:37582468-37582488 1.0000 20 chr11:86666467-86666487 1.0000 20 chr3:100211350-100211370 1.0000 20 chr22:50682996-50683016 1.0000 20 chr5:14581829-14581849 1.0000 20 chr19:8408200-8408220 1.0000 20 chr22:23412339-23412359 1.0000 20 chr6:79943674-79943694 1.0000 20 chr11:119066575-11906659 1.0000 20 chr13:41240832-41240852 1.0000 20 chr12:53473246-53473266 1.0000 20 chr2:98280019-98280039 1.0000 20 chr17:17566781-17566801 1.0000 20 chr11:32197958-32197978 1.0000 20 chr11:613712-613732 1.0000 20 chr2:12856905-12856925 1.0000 20 chr15:33487008-33487028 1.0000 20 chr19:29768244-29768264 1.0000 20 chr19:14640075-14640095 1.0000 20 chr1:145477009-145477029 1.0000 20 chr7:21467651-21467671 1.0000 20 chr12:56123506-56123526 1.0000 20 chr19:33166158-33166178 1.0000 20 chr17:76628195-76628215 1.0000 20 chr3:142838578-142838598 1.0000 20 chr6:6685769-6685789 1.0000 20 chr3:107241735-107241755 1.0000 20 chr1:31231807-31231827 1.0000 20 chr11:45168761-45168781 1.0000 20 chr19:55592108-55592128 1.0000 20 chr3:42544046-42544066 1.0000 20 chr17:37321271-37321291 1.0000 20 chr4:124317869-124317889 1.0000 20 chr14:89882544-89882564 1.0000 20 chr8:144513040-144513060 1.0000 20 chr18:74204988-74205008 1.0000 20 chr11:34272880-34272900 1.0000 20 chrX:47931291-47931311 1.0000 20 chr19:45873931-45873951 1.0000 20 chr4:160024173-160024193 1.0000 20 chr1:25757271-25757291 1.0000 20 chr16:89238027-89238047 1.0000 20 chr16:639861-639881 1.0000 20 chr12:14927243-14927263 1.0000 20 chr9:34989559-34989579 1.0000 20 chr10:42863559-42863579 1.0000 20 chr20:57580399-57580419 1.0000 20 chr13:73633055-73633075 1.0000 20 chr1:117664777-117664797 1.0000 20 chr20:40247125-40247145 1.0000 20 chr21:35014559-35014579 1.0000 20 chr15:37393938-37393958 1.0000 20 chr22:29468842-29468862 1.0000 20 chr19:7739405-7739425 1.0000 20 chr3:9885737-9885757 1.0000 20 chr1:11444415-11444435 1.0000 20 chr19:4153549-4153569 1.0000 20 chr14:94492667-94492687 1.0000 20 chr4:78741386-78741406 1.0000 20 chr10:104263617-10426363 1.0000 20 chr15:86338201-86338221 1.0000 20 chr8:145239876-145239896 1.0000 20 chr10:28966333-28966353 1.0000 20 chr22:30723140-30723160 1.0000 20 chr6:27219707-27219727 1.0000 20 chr16:67927019-67927039 1.0000 20 chr7:150929542-150929562 1.0000 20 chr10:45474300-45474320 1.0000 20 chr6:36165097-36165117 1.0000 20 chr18:48405397-48405417 1.0000 20 chr19:13906067-13906087 1.0000 20 chr17:73390041-73390061 1.0000 20 chr1:27320141-27320161 1.0000 20 chr19:39034781-39034801 1.0000 20 chr10:80713045-80713065 1.0000 20 chr15:78799613-78799633 1.0000 20 chr9:128508977-128508997 1.0000 20 chr1:198128273-198128293 1.0000 20 chr2:198669248-198669268 1.0000 20 chr4:16122601-16122621 1.0000 20 chr13:20532721-20532741 1.0000 20 chr18:11149590-11149610 1.0000 20 chr6:474933-474953 1.0000 20 chr6:119670974-119670994 1.0000 20 chr17:27139553-27139573 1.0000 20 chr1:232766000-232766020 1.0000 20 chr11:71094705-71094725 1.0000 20 chr1:112938791-112938811 1.0000 20 chr3:185826987-185827007 1.0000 20 chr10:71211196-71211216 1.0000 20 chr4:6271467-6271487 1.0000 20 chr1:205196993-205197013 1.0000 20 chr2:227666004-227666024 1.0000 20 chr4:184580394-184580414 1.0000 20 chr19:3094326-3094346 1.0000 20 chr4:175204403-175204423 1.0000 20 chr1:17446021-17446041 1.0000 20 chr9:131940625-131940645 1.0000 20 chr3:127555483-127555503 1.0000 20 chr8:38243939-38243959 1.0000 20 chr4:149363796-149363816 1.0000 20 chr8:25242933-25242953 1.0000 20 chr12:7282936-7282956 1.0000 20 chr19:2841343-2841363 1.0000 20 chr19:19249322-19249342 1.0000 20 chr16:4852985-4853005 1.0000 20 chr8:25316019-25316039 1.0000 20 chr1:109940654-109940674 1.0000 20 chr20:34360218-34360238 1.0000 20 chr20:45035332-45035352 1.0000 20 chr10:112624560-11262458 1.0000 20 chr14:103588550-10358857 1.0000 20 chrX:200072-200092 1.0000 20 chr19:4065982-4066002 1.0000 20 chr3:57261690-57261710 1.0000 20 chr15:34657781-34657801 1.0000 20 chr4:148764563-148764583 1.0000 20 chr6:32862469-32862489 1.0000 20 chr11:19138637-19138657 1.0000 20 chr3:101497996-101498016 1.0000 20 chr10:104261951-10426197 1.0000 20 chr1:161228437-161228457 1.0000 20 chr11:535668-535688 1.0000 20 chr21:44394750-44394770 1.0000 20 chr1:205782365-205782385 1.0000 20 chr2:232646056-232646076 1.0000 20 chr6:108879811-108879831 1.0000 20 chr14:51561957-51561977 1.0000 20 chr19:18414408-18414428 1.0000 20 chr19:12098344-12098364 1.0000 20 chr22:40440284-40440304 1.0000 20 chr12:2994638-2994658 1.0000 20 chr22:20004471-20004491 1.0000 20 chr4:111544352-111544372 1.0000 20 chr19:11924997-11925017 1.0000 20 chr9:130533746-130533766 1.0000 20 chr6:37282847-37282867 1.0000 20 chrX:63425674-63425694 1.0000 20 chr8:145159270-145159290 1.0000 20 chr19:12175428-12175448 1.0000 20 chr17:41323141-41323161 1.0000 20 chr1:94210306-94210326 1.0000 20 chr15:70392096-70392116 1.0000 20 chr19:41221059-41221079 1.0000 20 chr10:22972427-22972447 1.0000 20 chr9:84304874-84304894 1.0000 20 chr19:13944567-13944587 1.0000 20 chr1:22345712-22345732 1.0000 20 chr9:104295778-104295798 1.0000 20 chr14:37130982-37131002 1.0000 20 chr1:54872133-54872153 1.0000 20 chr22:21400118-21400138 1.0000 20 chr2:73298497-73298517 1.0000 20 chr19:33864531-33864551 1.0000 20 chr8:144450906-144450926 1.0000 20 chr19:48112004-48112024 1.0000 20 chr19:42498469-42498489 1.0000 20 chr12:50101446-50101466 1.0000 20 chr2:10953001-10953021 1.0000 20 chr17:79196875-79196895 1.0000 20 chr22:39190223-39190243 1.0000 20 chr2:38119575-38119595 1.0000 20 chr4:48782464-48782484 1.0000 20 chr2:241497449-241497469 1.0000 20 chr8:101965160-101965180 1.0000 20 chr4:124247-124267 1.0000 20 chr16:30959634-30959654 1.0000 20 chr19:17400490-17400510 1.0000 20 chr4:13546693-13546713 1.0000 20 chr7:98594088-98594108 1.0000 20 chr19:6372598-6372618 1.0000 20 chr10:80733415-80733435 1.0000 20 chr19:41082679-41082699 1.0000 20 chr14:24740395-24740415 1.0000 20 chr2:20412390-20412410 1.0000 20 chr4:468066-468086 1.0000 20 chr3:9142381-9142401 1.0000 20 chr21:32931479-32931499 1.0000 20 chr12:121342481-12134250 1.0000 20 chr2:76643111-76643131 1.0000 20 chr3:13521639-13521659 1.0000 20 chr1:40157165-40157185 1.0000 20 chr1:32930602-32930622 1.0000 20 chr5:32313304-32313324 1.0000 20 chr6:112194695-112194715 1.0000 20 chr4:124318602-124318622 1.0000 20 chr16:22386001-22386021 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_PBX3/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/PBX3.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.184 C 0.311 G 0.31 T 0.195 Background letter frequencies (from file dataset with add-one prior applied): A 0.184 C 0.311 G 0.31 T 0.195 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TGAKTGRC MEME-1 width = 8 sites = 63 llr = 454 E-value = 7.0e-048 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGAKTGRC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1:a:::6: pos.-specific C :1:2:::8 probability G 19:41a4: matrix T 7::49::1 bits 2.4 2.2 * 2.0 * 1.7 * * Relative 1.5 * ** Entropy 1.2 ** ** (10.4 bits) 1.0 *** **** 0.7 *** **** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGATTGAC consensus G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAKTGRC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:32862469-32862489 6 7.50e-06 AGCCC TGATTGAC GTTCAGC chr4:78741386-78741406 9 7.50e-06 AGGAGGGT TGATTGAC GTGG chr4:124317869-124317889 6 7.50e-06 CCGAG TGATTGAC ACATGAT chr6:79943674-79943694 13 7.50e-06 GCCCCAGCCC TGATTGAC chr17:58679464-58679484 3 7.50e-06 GT TGATTGAC TCAAAAACCA chr4:13546693-13546713 4 1.94e-05 TGC TGAGTGAC AGCCTGAGG chr6:108879811-108879831 5 1.94e-05 CACT TGAGTGAC GGGCGCTG chr9:131940625-131940645 3 1.94e-05 CC TGAGTGAC AGGCGCAGCC chr8:145239876-145239896 13 1.94e-05 GTGCTGCTGG TGAGTGAC chr11:34272880-34272900 10 1.94e-05 TGCTCTGGC TGAGTGAC AGC chr11:32197958-32197978 12 1.94e-05 GTTTTTTCCT TGAGTGAC A chr6:132834315-132834335 5 1.94e-05 GGGC TGAGTGAC AGCGGCCC chr6:15399027-15399047 11 1.94e-05 TCTGAGTGTT TGAGTGAC AG chr19:12267632-12267652 11 1.94e-05 CCATCGGTCC TGAGTGAC AG chr1:247242169-247242189 2 1.94e-05 C TGAGTGAC GGGAGATGCA chr4:6271467-6271487 2 3.21e-05 G TGATTGGC GGCTACACCG chr21:35014559-35014579 1 3.21e-05 . TGATTGGC TCATTCGGCT chr5:14581829-14581849 4 3.21e-05 CTC TGATTGGC TGCCCGGCG chr2:45168751-45168771 9 3.21e-05 GCTGACAG TGATTGGC AGTG chr8:80680168-80680188 11 3.21e-05 CTCGCGCCGC TGATTGGC AG chr8:25242933-25242953 11 3.68e-05 agccatctga tgattgat gg chr19:39034781-39034801 13 3.68e-05 AGCTCCTCTA TGATTGAT chr7:150929542-150929562 9 6.88e-05 GAGACGGG TGACTGAC AGGC chr17:17566781-17566801 4 6.88e-05 TGA TGACTGAC AGCCCAGGA chr6:94129353-94129373 7 6.88e-05 TCGGGC TGAGTGGC AGGCAC chr7:98594088-98594108 3 8.34e-05 CA TGAGTGAT TGCAGCACAT chr10:28966333-28966353 4 9.53e-05 GGC GGATTGAC AGGAGCCCG chr3:9885737-9885757 2 1.03e-04 C TGATTGGT CAGCTGGAGT chr19:29768244-29768264 10 1.03e-04 gctctggat tgattggt ttg chr6:112194695-112194715 9 1.59e-04 GCGCCTCG AGAGTGAC AGGC chr19:41221059-41221079 12 1.59e-04 AGCAACTCGC TGACTGGC A chr6:119670974-119670994 6 1.59e-04 GCCGG AGAGTGAC GGCGCGG chr19:33166158-33166178 1 1.59e-04 . AGAGTGAC GTGTACGCAG chr2:73298497-73298517 10 1.78e-04 GGCAGTCGG GGAGTGAC GGC chr22:40440284-40440304 12 1.78e-04 ATTTGACTGG GGAGTGAC A chrX:80377256-80377276 11 1.78e-04 GAGCCACATT GGAGTGAC AG chr21:44394750-44394770 11 2.10e-04 AGTGTGATGA AGATTGGC AC chr1:25757271-25757291 3 2.49e-04 TG GGATTGGC CGACAGCGGT chr18:74204988-74205008 2 2.49e-04 C GGATTGGC CAGCAGAGCC chr9:119449530-119449550 8 2.49e-04 GCGGGGC TCAGTGAC GGACA chr17:41323141-41323161 7 2.84e-04 TCGTTT TGAGGGAC AAGTGG chr11:19138637-19138657 8 2.84e-04 CCGGGAC CGATTGAC GGCTC chr22:25632025-25632045 8 2.92e-04 CAGGCCC TGATTGGA GGCAA chr11:118799359-11879937 5 3.12e-04 TCAA TCATTGGC TCAGGGCA chr3:13521639-13521659 9 3.62e-04 TTCGGGCT TGATGGGC GTTG chrX:74493842-74493862 8 3.62e-04 GCGCCGC AGAGTGGC GGGGA chr14:103588550-10358857 1 4.77e-04 . TGATGGAT GGCAATCCGA chr14:89882544-89882564 5 6.18e-04 GTGG CGATTGGC TGCACCCC chr11:45168761-45168781 6 6.18e-04 CCCGC TGACGGAC GTGGCCG chr16:84538290-84538310 9 6.18e-04 AACATTGC TGAGGGGC AGTC chr10:71211196-71211216 7 6.35e-04 GGGCTG TGATTGCC GCGCTC chrX:200072-200092 4 6.82e-04 agg ggattggt ctgaccagg chr2:12856905-12856925 2 8.18e-04 A GGACTGGC AGCGGCGGGG chr4:111544352-111544372 6 9.18e-04 GGGTG CGACTGAC GTGGCTC chr22:39190223-39190243 12 9.64e-04 AGTATCAATC AGAGTGAA A chr2:20412390-20412410 11 1.05e-03 ATTTATCAGC TCACTGGC TC chr1:94210306-94210326 1 1.05e-03 . TGATTTAT TGCTTTCATT chr11:64490722-64490742 7 1.12e-03 CTGCGC TGACGGGC GAGCAG chr10:112624560-11262458 2 1.24e-03 A TGACTGTC AATCATGTTA chr11:71094705-71094725 6 1.24e-03 ATTTG TCACTGAT CCAGGTG chr19:56623125-56623145 12 1.34e-03 ACAACCAGCC TGGGTGAC A chr16:639861-639881 2 1.39e-03 C TGAGGGAA GGAGGGCGGC chr13:110439028-11043904 1 1.39e-03 . GCATTGGC GCCGCGCCCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAKTGRC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:32862469-32862489 7.5e-06 5_[+1]_7 chr4:78741386-78741406 7.5e-06 8_[+1]_4 chr4:124317869-124317889 7.5e-06 5_[+1]_7 chr6:79943674-79943694 7.5e-06 12_[+1] chr17:58679464-58679484 7.5e-06 2_[+1]_10 chr4:13546693-13546713 1.9e-05 3_[+1]_9 chr6:108879811-108879831 1.9e-05 4_[+1]_8 chr9:131940625-131940645 1.9e-05 2_[+1]_10 chr8:145239876-145239896 1.9e-05 12_[+1] chr11:34272880-34272900 1.9e-05 9_[+1]_3 chr11:32197958-32197978 1.9e-05 11_[+1]_1 chr6:132834315-132834335 1.9e-05 4_[+1]_8 chr6:15399027-15399047 1.9e-05 10_[+1]_2 chr19:12267632-12267652 1.9e-05 10_[+1]_2 chr1:247242169-247242189 1.9e-05 1_[+1]_11 chr4:6271467-6271487 3.2e-05 1_[+1]_11 chr21:35014559-35014579 3.2e-05 [+1]_12 chr5:14581829-14581849 3.2e-05 3_[+1]_9 chr2:45168751-45168771 3.2e-05 8_[+1]_4 chr8:80680168-80680188 3.2e-05 10_[+1]_2 chr8:25242933-25242953 3.7e-05 10_[+1]_2 chr19:39034781-39034801 3.7e-05 12_[+1] chr7:150929542-150929562 6.9e-05 8_[+1]_4 chr17:17566781-17566801 6.9e-05 3_[+1]_9 chr6:94129353-94129373 6.9e-05 6_[+1]_6 chr7:98594088-98594108 8.3e-05 2_[+1]_10 chr10:28966333-28966353 9.5e-05 3_[+1]_9 chr3:9885737-9885757 0.0001 1_[+1]_11 chr19:29768244-29768264 0.0001 9_[+1]_3 chr6:112194695-112194715 0.00016 8_[+1]_4 chr19:41221059-41221079 0.00016 11_[+1]_1 chr6:119670974-119670994 0.00016 5_[+1]_7 chr19:33166158-33166178 0.00016 [+1]_12 chr2:73298497-73298517 0.00018 9_[+1]_3 chr22:40440284-40440304 0.00018 11_[+1]_1 chrX:80377256-80377276 0.00018 10_[+1]_2 chr21:44394750-44394770 0.00021 10_[+1]_2 chr1:25757271-25757291 0.00025 2_[+1]_10 chr18:74204988-74205008 0.00025 1_[+1]_11 chr9:119449530-119449550 0.00025 7_[+1]_5 chr17:41323141-41323161 0.00028 6_[+1]_6 chr11:19138637-19138657 0.00028 7_[+1]_5 chr22:25632025-25632045 0.00029 7_[+1]_5 chr11:118799359-11879937 0.00031 4_[+1]_8 chr3:13521639-13521659 0.00036 8_[+1]_4 chrX:74493842-74493862 0.00036 7_[+1]_5 chr14:103588550-10358857 0.00048 [+1]_12 chr14:89882544-89882564 0.00062 4_[+1]_8 chr11:45168761-45168781 0.00062 5_[+1]_7 chr16:84538290-84538310 0.00062 8_[+1]_4 chr10:71211196-71211216 0.00064 6_[+1]_6 chrX:200072-200092 0.00068 3_[+1]_9 chr2:12856905-12856925 0.00082 1_[+1]_11 chr4:111544352-111544372 0.00092 5_[+1]_7 chr22:39190223-39190243 0.00096 11_[+1]_1 chr2:20412390-20412410 0.001 10_[+1]_2 chr1:94210306-94210326 0.001 [+1]_12 chr11:64490722-64490742 0.0011 6_[+1]_6 chr10:112624560-11262458 0.0012 1_[+1]_11 chr11:71094705-71094725 0.0012 5_[+1]_7 chr19:56623125-56623145 0.0013 11_[+1]_1 chr16:639861-639881 0.0014 1_[+1]_11 chr13:110439028-11043904 0.0014 [+1]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAKTGRC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGAKTGRC width=8 seqs=63 chr6:32862469-32862489 ( 6) TGATTGAC 1 chr4:78741386-78741406 ( 9) TGATTGAC 1 chr4:124317869-124317889 ( 6) TGATTGAC 1 chr6:79943674-79943694 ( 13) TGATTGAC 1 chr17:58679464-58679484 ( 3) TGATTGAC 1 chr4:13546693-13546713 ( 4) TGAGTGAC 1 chr6:108879811-108879831 ( 5) TGAGTGAC 1 chr9:131940625-131940645 ( 3) TGAGTGAC 1 chr8:145239876-145239896 ( 13) TGAGTGAC 1 chr11:34272880-34272900 ( 10) TGAGTGAC 1 chr11:32197958-32197978 ( 12) TGAGTGAC 1 chr6:132834315-132834335 ( 5) TGAGTGAC 1 chr6:15399027-15399047 ( 11) TGAGTGAC 1 chr19:12267632-12267652 ( 11) TGAGTGAC 1 chr1:247242169-247242189 ( 2) TGAGTGAC 1 chr4:6271467-6271487 ( 2) TGATTGGC 1 chr21:35014559-35014579 ( 1) TGATTGGC 1 chr5:14581829-14581849 ( 4) TGATTGGC 1 chr2:45168751-45168771 ( 9) TGATTGGC 1 chr8:80680168-80680188 ( 11) TGATTGGC 1 chr8:25242933-25242953 ( 11) TGATTGAT 1 chr19:39034781-39034801 ( 13) TGATTGAT 1 chr7:150929542-150929562 ( 9) TGACTGAC 1 chr17:17566781-17566801 ( 4) TGACTGAC 1 chr6:94129353-94129373 ( 7) TGAGTGGC 1 chr7:98594088-98594108 ( 3) TGAGTGAT 1 chr10:28966333-28966353 ( 4) GGATTGAC 1 chr3:9885737-9885757 ( 2) TGATTGGT 1 chr19:29768244-29768264 ( 10) TGATTGGT 1 chr6:112194695-112194715 ( 9) AGAGTGAC 1 chr19:41221059-41221079 ( 12) TGACTGGC 1 chr6:119670974-119670994 ( 6) AGAGTGAC 1 chr19:33166158-33166178 ( 1) AGAGTGAC 1 chr2:73298497-73298517 ( 10) GGAGTGAC 1 chr22:40440284-40440304 ( 12) GGAGTGAC 1 chrX:80377256-80377276 ( 11) GGAGTGAC 1 chr21:44394750-44394770 ( 11) AGATTGGC 1 chr1:25757271-25757291 ( 3) GGATTGGC 1 chr18:74204988-74205008 ( 2) GGATTGGC 1 chr9:119449530-119449550 ( 8) TCAGTGAC 1 chr17:41323141-41323161 ( 7) TGAGGGAC 1 chr11:19138637-19138657 ( 8) CGATTGAC 1 chr22:25632025-25632045 ( 8) TGATTGGA 1 chr11:118799359-11879937 ( 5) TCATTGGC 1 chr3:13521639-13521659 ( 9) TGATGGGC 1 chrX:74493842-74493862 ( 8) AGAGTGGC 1 chr14:103588550-10358857 ( 1) TGATGGAT 1 chr14:89882544-89882564 ( 5) CGATTGGC 1 chr11:45168761-45168781 ( 6) TGACGGAC 1 chr16:84538290-84538310 ( 9) TGAGGGGC 1 chr10:71211196-71211216 ( 7) TGATTGCC 1 chrX:200072-200092 ( 4) GGATTGGT 1 chr2:12856905-12856925 ( 2) GGACTGGC 1 chr4:111544352-111544372 ( 6) CGACTGAC 1 chr22:39190223-39190243 ( 12) AGAGTGAA 1 chr2:20412390-20412410 ( 11) TCACTGGC 1 chr1:94210306-94210326 ( 1) TGATTTAT 1 chr11:64490722-64490742 ( 7) TGACGGGC 1 chr10:112624560-11262458 ( 2) TGACTGTC 1 chr11:71094705-71094725 ( 6) TCACTGAT 1 chr19:56623125-56623145 ( 12) TGGGTGAC 1 chr16:639861-639881 ( 2) TGAGGGAA 1 chr13:110439028-11043904 ( 1) GCATTGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAKTGRC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 6.39367 E= 7.0e-048 -95 -270 -112 187 -1262 -197 157 -1262 242 -1262 -428 -1262 -1262 -97 36 119 -1262 -1262 -148 219 -1262 -1262 167 -362 171 -429 24 -362 -195 138 -1262 -45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAKTGRC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 63 E= 7.0e-048 0.095238 0.047619 0.142857 0.714286 0.000000 0.079365 0.920635 0.000000 0.984127 0.000000 0.015873 0.000000 0.000000 0.158730 0.396825 0.444444 0.000000 0.000000 0.111111 0.888889 0.000000 0.000000 0.984127 0.015873 0.603175 0.015873 0.365079 0.015873 0.047619 0.809524 0.000000 0.142857 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAKTGRC MEME-1 regular expression -------------------------------------------------------------------------------- TGA[TG]TG[AG]C -------------------------------------------------------------------------------- Time 2.38 secs. ******************************************************************************** ******************************************************************************** MOTIF GTCAVTCA MEME-2 width = 8 sites = 58 llr = 417 E-value = 2.2e-040 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTCAVTCA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 1::83::7 pos.-specific C :3a23:a1 probability G 9:::4::1 matrix T :7:1:a:2 bits 2.4 2.2 * 2.0 * 1.7 * ** Relative 1.5 * ** Entropy 1.2 *** ** (10.4 bits) 1.0 **** *** 0.7 **** *** 0.5 **** *** 0.2 ******** 0.0 -------- Multilevel GTCAGTCA consensus C A sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCAVTCA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:9142381-9142401 6 7.10e-06 actgt gtcaatca tgtggta chr3:127555483-127555503 3 7.10e-06 CT GTCAATCA AAGTGACTCC chr22:37582468-37582488 9 7.10e-06 ATGGTTGT GTCAATCA TCGT chr1:200379255-200379275 12 7.10e-06 CGGCCTGCCT GTCAATCA C chr7:99798060-99798080 2 7.10e-06 T GTCAATCA TCACAGTTCT chr14:91882412-91882432 4 7.10e-06 GCT GTCAATCA GGCCGTGCA chr4:149363796-149363816 9 1.91e-05 TCCAGGCT GTCAGTCA CCAG chr12:6663465-6663485 11 1.91e-05 ACCAAAGCCT GTCAGTCA CC chr2:76643111-76643131 9 3.11e-05 ATCATTCT GTCACTCA AACA chr19:12175428-12175448 13 3.11e-05 GACTTCTGCT GTCACTCA chr19:12098344-12098364 12 3.11e-05 GGCTTCTGCT GTCACTCA G chr19:18414408-18414428 6 3.11e-05 CTCAT GTCACTCA GGGCCCA chr8:38243939-38243959 13 3.11e-05 TGGCGATGTC GTCACTCA chr4:184580394-184580414 11 3.11e-05 GTAGAGCGCG GTCACTCA GG chr19:12075740-12075760 13 3.11e-05 GGCTTCCGCT GTCACTCA chr12:50101446-50101466 6 4.24e-05 CGTCT GCCAATCA CAGCGCC chr10:104261951-10426197 1 4.24e-05 . GCCAATCA CCGCAGAGGC chr8:144513040-144513060 5 4.99e-05 AGCT GTCAATCT CCTGCGGG chr10:45474300-45474320 3 7.32e-05 CT ATCAATCA CTGTCACGAG chr10:102790975-10279099 4 7.32e-05 GCC GCCAGTCA TTCTATTCC chr1:232766000-232766020 7 1.05e-04 GACGCC GTCAGTCT CACCGT chr15:78799613-78799633 2 1.05e-04 T GCCACTCA AGAGCCGAAA chr17:37321271-37321291 7 1.05e-04 CTGCCT GTCAGTCT GGTGGG chr15:43785396-43785416 13 1.05e-04 GCCGCCGCCC GCCACTCA chr13:44716203-44716223 8 1.05e-04 TGCACCT GCCACTCA GCCGC chr12:2994638-2994658 3 1.44e-04 CC ATCACTCA CACTCGACAG chr1:11444415-11444435 4 1.44e-04 gcc atcactca ctgtcatcc chr1:17446021-17446041 13 1.76e-04 CTGCGGGCCT GTCCGTCA chr14:94492667-94492687 10 1.76e-04 GCCTGAGAC GTCAATCG CAG chr3:107241735-107241755 9 1.76e-04 CGCGGCCT GTCCGTCA CTGC chr22:23412339-23412359 7 1.76e-04 TGGCCC GTCCGTCA GCTGCC chr5:96144123-96144143 8 1.76e-04 GCTGGGT GTCCGTCA TCTCG chr19:4153549-4153569 13 2.23e-04 CACCCTGTCC ACCAATCA chr5:179719089-179719109 12 2.23e-04 CCTCGCGCCG ACCAATCA G chr11:535668-535688 7 2.80e-04 CGGCCC GTCTGTCA GGAGCC chr2:9563092-9563112 5 2.80e-04 ACCT GTCTGTCA CCGTGATG chr2:241497449-241497469 3 3.84e-04 CT GCCACTCT CCGGCTCCGC chr4:16122601-16122621 1 3.84e-04 . GCCACTCT CTGGGGAGAC chr9:128508977-128508997 7 3.84e-04 CAGCCT GTCAATCC CTCGGC chr20:17662988-17663008 6 3.84e-04 ACCCC GCCACTCT GCCGGTC chr2:219824269-219824289 5 3.84e-04 AGCT GCCCATCA GGAGTGCA chr9:104295778-104295798 12 5.09e-04 GGGACCGTCA GCCAATCG G chr15:70392096-70392116 1 5.09e-04 . GTCAGTCC GCGGCCAGAG chr19:45873931-45873951 13 5.09e-04 CTAGGGCAGA GCCAATCG chr3:42544046-42544066 11 5.09e-04 TAGATCCGCC GCCCGTCA GA chr15:44487567-44487587 7 5.09e-04 CGAAAA GCCAATCG AGATAG chrX:14057685-14057705 8 5.33e-04 TTAATCT CTCAGTCA TAGGC chr14:51561957-51561977 6 6.07e-04 GACCC GTCCGTCT CCTCGTC chr2:10953001-10953021 12 6.27e-04 GCGGACATCG CTCACTCA C chr1:109940654-109940674 3 6.99e-04 CT GTCCCTCT TCCCCGGCCC chr12:7282936-7282956 2 6.99e-04 C ATCAATCG TTGCCCGGCT chr12:14927243-14927263 10 7.38e-04 GCGGAGCCT GCCTGTCA TTG chr17:33570001-33570021 7 8.47e-04 ACCTCT GTCTGTCT CCTGCG chr1:161228437-161228457 9 8.99e-04 AAGAGGCT GTCATTCT ACGG chr1:22345712-22345732 3 9.63e-04 GA GTCAGACA GACAGTGCCT chr2:43864360-43864380 11 1.07e-03 TACACCGGCT GCCAGTCC CT chr1:10270511-10270531 7 1.12e-03 GCCCGT GTCCGTCG CGGGCG chr5:65892133-65892153 7 1.21e-03 CGGGCT GCCCGTCT CCTTGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCAVTCA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:9142381-9142401 7.1e-06 5_[+2]_7 chr3:127555483-127555503 7.1e-06 2_[+2]_10 chr22:37582468-37582488 7.1e-06 8_[+2]_4 chr1:200379255-200379275 7.1e-06 11_[+2]_1 chr7:99798060-99798080 7.1e-06 1_[+2]_11 chr14:91882412-91882432 7.1e-06 3_[+2]_9 chr4:149363796-149363816 1.9e-05 8_[+2]_4 chr12:6663465-6663485 1.9e-05 10_[+2]_2 chr2:76643111-76643131 3.1e-05 8_[+2]_4 chr19:12175428-12175448 3.1e-05 12_[+2] chr19:12098344-12098364 3.1e-05 11_[+2]_1 chr19:18414408-18414428 3.1e-05 5_[+2]_7 chr8:38243939-38243959 3.1e-05 12_[+2] chr4:184580394-184580414 3.1e-05 10_[+2]_2 chr19:12075740-12075760 3.1e-05 12_[+2] chr12:50101446-50101466 4.2e-05 5_[+2]_7 chr10:104261951-10426197 4.2e-05 [+2]_12 chr8:144513040-144513060 5e-05 4_[+2]_8 chr10:45474300-45474320 7.3e-05 2_[+2]_10 chr10:102790975-10279099 7.3e-05 3_[+2]_9 chr1:232766000-232766020 0.00011 6_[+2]_6 chr15:78799613-78799633 0.00011 1_[+2]_11 chr17:37321271-37321291 0.00011 6_[+2]_6 chr15:43785396-43785416 0.00011 12_[+2] chr13:44716203-44716223 0.00011 7_[+2]_5 chr12:2994638-2994658 0.00014 2_[+2]_10 chr1:11444415-11444435 0.00014 3_[+2]_9 chr1:17446021-17446041 0.00018 12_[+2] chr14:94492667-94492687 0.00018 9_[+2]_3 chr3:107241735-107241755 0.00018 8_[+2]_4 chr22:23412339-23412359 0.00018 6_[+2]_6 chr5:96144123-96144143 0.00018 7_[+2]_5 chr19:4153549-4153569 0.00022 12_[+2] chr5:179719089-179719109 0.00022 11_[+2]_1 chr11:535668-535688 0.00028 6_[+2]_6 chr2:9563092-9563112 0.00028 4_[+2]_8 chr2:241497449-241497469 0.00038 2_[+2]_10 chr4:16122601-16122621 0.00038 [+2]_12 chr9:128508977-128508997 0.00038 6_[+2]_6 chr20:17662988-17663008 0.00038 5_[+2]_7 chr2:219824269-219824289 0.00038 4_[+2]_8 chr9:104295778-104295798 0.00051 11_[+2]_1 chr15:70392096-70392116 0.00051 [+2]_12 chr19:45873931-45873951 0.00051 12_[+2] chr3:42544046-42544066 0.00051 10_[+2]_2 chr15:44487567-44487587 0.00051 6_[+2]_6 chrX:14057685-14057705 0.00053 7_[+2]_5 chr14:51561957-51561977 0.00061 5_[+2]_7 chr2:10953001-10953021 0.00063 11_[+2]_1 chr1:109940654-109940674 0.0007 2_[+2]_10 chr12:7282936-7282956 0.0007 1_[+2]_11 chr12:14927243-14927263 0.00074 9_[+2]_3 chr17:33570001-33570021 0.00085 6_[+2]_6 chr1:161228437-161228457 0.0009 8_[+2]_4 chr1:22345712-22345732 0.00096 2_[+2]_10 chr2:43864360-43864380 0.0011 10_[+2]_2 chr1:10270511-10270531 0.0011 6_[+2]_6 chr5:65892133-65892153 0.0012 6_[+2]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCAVTCA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTCAVTCA width=8 seqs=58 chr3:9142381-9142401 ( 6) GTCAATCA 1 chr3:127555483-127555503 ( 3) GTCAATCA 1 chr22:37582468-37582488 ( 9) GTCAATCA 1 chr1:200379255-200379275 ( 12) GTCAATCA 1 chr7:99798060-99798080 ( 2) GTCAATCA 1 chr14:91882412-91882432 ( 4) GTCAATCA 1 chr4:149363796-149363816 ( 9) GTCAGTCA 1 chr12:6663465-6663485 ( 11) GTCAGTCA 1 chr2:76643111-76643131 ( 9) GTCACTCA 1 chr19:12175428-12175448 ( 13) GTCACTCA 1 chr19:12098344-12098364 ( 12) GTCACTCA 1 chr19:18414408-18414428 ( 6) GTCACTCA 1 chr8:38243939-38243959 ( 13) GTCACTCA 1 chr4:184580394-184580414 ( 11) GTCACTCA 1 chr19:12075740-12075760 ( 13) GTCACTCA 1 chr12:50101446-50101466 ( 6) GCCAATCA 1 chr10:104261951-10426197 ( 1) GCCAATCA 1 chr8:144513040-144513060 ( 5) GTCAATCT 1 chr10:45474300-45474320 ( 3) ATCAATCA 1 chr10:102790975-10279099 ( 4) GCCAGTCA 1 chr1:232766000-232766020 ( 7) GTCAGTCT 1 chr15:78799613-78799633 ( 2) GCCACTCA 1 chr17:37321271-37321291 ( 7) GTCAGTCT 1 chr15:43785396-43785416 ( 13) GCCACTCA 1 chr13:44716203-44716223 ( 8) GCCACTCA 1 chr12:2994638-2994658 ( 3) ATCACTCA 1 chr1:11444415-11444435 ( 4) ATCACTCA 1 chr1:17446021-17446041 ( 13) GTCCGTCA 1 chr14:94492667-94492687 ( 10) GTCAATCG 1 chr3:107241735-107241755 ( 9) GTCCGTCA 1 chr22:23412339-23412359 ( 7) GTCCGTCA 1 chr5:96144123-96144143 ( 8) GTCCGTCA 1 chr19:4153549-4153569 ( 13) ACCAATCA 1 chr5:179719089-179719109 ( 12) ACCAATCA 1 chr11:535668-535688 ( 7) GTCTGTCA 1 chr2:9563092-9563112 ( 5) GTCTGTCA 1 chr2:241497449-241497469 ( 3) GCCACTCT 1 chr4:16122601-16122621 ( 1) GCCACTCT 1 chr9:128508977-128508997 ( 7) GTCAATCC 1 chr20:17662988-17663008 ( 6) GCCACTCT 1 chr2:219824269-219824289 ( 5) GCCCATCA 1 chr9:104295778-104295798 ( 12) GCCAATCG 1 chr15:70392096-70392116 ( 1) GTCAGTCC 1 chr19:45873931-45873951 ( 13) GCCAATCG 1 chr3:42544046-42544066 ( 11) GCCCGTCA 1 chr15:44487567-44487587 ( 7) GCCAATCG 1 chrX:14057685-14057705 ( 8) CTCAGTCA 1 chr14:51561957-51561977 ( 6) GTCCGTCT 1 chr2:10953001-10953021 ( 12) CTCACTCA 1 chr1:109940654-109940674 ( 3) GTCCCTCT 1 chr12:7282936-7282956 ( 2) ATCAATCG 1 chr12:14927243-14927263 ( 10) GCCTGTCA 1 chr17:33570001-33570021 ( 7) GTCTGTCT 1 chr1:161228437-161228457 ( 9) GTCATTCT 1 chr1:22345712-22345732 ( 3) GTCAGACA 1 chr2:43864360-43864380 ( 11) GCCAGTCC 1 chr1:10270511-10270531 ( 7) GTCCGTCG 1 chr5:65892133-65892153 ( 7) GCCCGTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCAVTCA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 6.43238 E= 2.2e-040 -83 -317 148 -1250 -1250 8 -1250 179 -1250 169 -1250 -1250 204 -85 -1250 -150 83 -8 23 -350 -342 -1250 -1250 233 -1250 169 -1250 -1250 183 -259 -158 -4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCAVTCA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 58 E= 2.2e-040 0.103448 0.034483 0.862069 0.000000 0.000000 0.327586 0.000000 0.672414 0.000000 1.000000 0.000000 0.000000 0.758621 0.172414 0.000000 0.068966 0.327586 0.293103 0.362069 0.017241 0.017241 0.000000 0.000000 0.982759 0.000000 1.000000 0.000000 0.000000 0.655172 0.051724 0.103448 0.189655 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCAVTCA MEME-2 regular expression -------------------------------------------------------------------------------- G[TC]CA[GAC]TCA -------------------------------------------------------------------------------- Time 3.90 secs. ******************************************************************************** ******************************************************************************** MOTIF CRGCCAAT MEME-3 width = 8 sites = 10 llr = 90 E-value = 7.6e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CRGCCAAT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :61::aa: pos.-specific C 8::9a::1 probability G 2491:::: matrix T :::::::9 bits 2.4 ** 2.2 ** 2.0 ** 1.7 **** Relative 1.5 **** Entropy 1.2 ******* (13.0 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CAGCCAAT consensus GG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRGCCAAT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:198128273-198128293 13 1.13e-05 ACGGCCTTCG CAGCCAAT chr6:36165097-36165117 9 1.13e-05 AGGTGACG CAGCCAAT GGGT chr1:54872133-54872153 13 3.04e-05 ATGGCCGCCT CGGCCAAT chr17:73390041-73390061 5 3.04e-05 CTGC CGGCCAAT GGCACAGC chr13:41240832-41240852 8 3.04e-05 GCCCGCG CGGCCAAT GGGCA chr3:57261690-57261710 11 4.17e-05 GCGTCCCCGG GAGCCAAT GG chr19:19143362-19143382 10 4.84e-05 CGGGACCCC CAACCAAT GAC chr5:139780735-139780755 12 5.97e-05 CTCCTCCAAC CAGGCAAT G chr19:13944567-13944587 13 7.87e-05 CCGCTCGAGT GGGCCAAT chr19:8408200-8408220 5 1.08e-04 ACGC CAGCCAAC CAGCACCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRGCCAAT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:198128273-198128293 1.1e-05 12_[+3] chr6:36165097-36165117 1.1e-05 8_[+3]_4 chr1:54872133-54872153 3e-05 12_[+3] chr17:73390041-73390061 3e-05 4_[+3]_8 chr13:41240832-41240852 3e-05 7_[+3]_5 chr3:57261690-57261710 4.2e-05 10_[+3]_2 chr19:19143362-19143382 4.8e-05 9_[+3]_3 chr5:139780735-139780755 6e-05 11_[+3]_1 chr19:13944567-13944587 7.9e-05 12_[+3] chr19:8408200-8408220 0.00011 4_[+3]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRGCCAAT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CRGCCAAT width=8 seqs=10 chr1:198128273-198128293 ( 13) CAGCCAAT 1 chr6:36165097-36165117 ( 9) CAGCCAAT 1 chr1:54872133-54872153 ( 13) CGGCCAAT 1 chr17:73390041-73390061 ( 5) CGGCCAAT 1 chr13:41240832-41240852 ( 8) CGGCCAAT 1 chr3:57261690-57261710 ( 11) GAGCCAAT 1 chr19:19143362-19143382 ( 10) CAACCAAT 1 chr5:139780735-139780755 ( 12) CAGGCAAT 1 chr19:13944567-13944587 ( 13) GGGCCAAT 1 chr19:8408200-8408220 ( 5) CAGCCAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRGCCAAT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.5921 E= 7.6e+001 -997 136 -63 -997 170 -997 37 -997 -88 -997 154 -997 -997 153 -163 -997 -997 169 -997 -997 244 -997 -997 -997 244 -997 -997 -997 -997 -163 -997 220 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRGCCAAT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 7.6e+001 0.000000 0.800000 0.200000 0.000000 0.600000 0.000000 0.400000 0.000000 0.100000 0.000000 0.900000 0.000000 0.000000 0.900000 0.100000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.100000 0.000000 0.900000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRGCCAAT MEME-3 regular expression -------------------------------------------------------------------------------- [CG][AG]GCCAAT -------------------------------------------------------------------------------- Time 4.57 secs. ******************************************************************************** ******************************************************************************** MOTIF ATTGGCCV MEME-4 width = 8 sites = 12 llr = 98 E-value = 2.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATTGGCCV MEME-4 Description -------------------------------------------------------------------------------- Simplified A a:1::113 pos.-specific C :::::784 probability G :::aa3:3 matrix T :a9:::2: bits 2.4 ** 2.2 ** 2.0 *** 1.7 ***** Relative 1.5 ***** Entropy 1.2 ***** (11.8 bits) 1.0 ***** 0.7 ***** * 0.5 ******* 0.2 ******** 0.0 -------- Multilevel ATTGGCCC consensus G G sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTGGCCV MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:32930602-32930622 1 3.22e-05 . ATTGGCCA GCCGCCCCGC chr18:48405397-48405417 9 3.22e-05 TGCCTCCA ATTGGCCC GCGA chr16:4852985-4853005 2 5.24e-05 C ATTGGCCG GCAGGACAGT chr1:205196993-205197013 3 5.24e-05 CC ATTGGCCG GTTGCCGCTG chr21:32931479-32931499 1 8.44e-05 . ATTGGGCC GCCTGACAAT chr17:79196875-79196895 2 8.44e-05 C ATTGGGCC GCTCGGCTGT chr22:20004471-20004491 9 8.44e-05 GGCTTGCC ATTGGGCC TCCG chr1:40157165-40157185 9 1.05e-04 GCACGGCT ATTGGCTC CTCT chr22:21400118-21400138 11 1.37e-04 GCGCGTCGCT ATTGGCTG TG chr1:31231807-31231827 2 1.56e-04 G ATTGGACA CTGCTGCAGC chrX:63425674-63425694 1 1.99e-04 . ATTGGCAG GCATATGGCC chr2:240322715-240322735 4 2.62e-04 GCG ATAGGCCA CCCCGCACG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTGGCCV MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:32930602-32930622 3.2e-05 [+4]_12 chr18:48405397-48405417 3.2e-05 8_[+4]_4 chr16:4852985-4853005 5.2e-05 1_[+4]_11 chr1:205196993-205197013 5.2e-05 2_[+4]_10 chr21:32931479-32931499 8.4e-05 [+4]_12 chr17:79196875-79196895 8.4e-05 1_[+4]_11 chr22:20004471-20004491 8.4e-05 8_[+4]_4 chr1:40157165-40157185 0.0001 8_[+4]_4 chr22:21400118-21400138 0.00014 10_[+4]_2 chr1:31231807-31231827 0.00016 1_[+4]_11 chrX:63425674-63425694 0.0002 [+4]_12 chr2:240322715-240322735 0.00026 3_[+4]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTGGCCV MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATTGGCCV width=8 seqs=12 chr1:32930602-32930622 ( 1) ATTGGCCA 1 chr18:48405397-48405417 ( 9) ATTGGCCC 1 chr16:4852985-4853005 ( 2) ATTGGCCG 1 chr1:205196993-205197013 ( 3) ATTGGCCG 1 chr21:32931479-32931499 ( 1) ATTGGGCC 1 chr17:79196875-79196895 ( 2) ATTGGGCC 1 chr22:20004471-20004491 ( 9) ATTGGGCC 1 chr1:40157165-40157185 ( 9) ATTGGCTC 1 chr22:21400118-21400138 ( 11) ATTGGCTG 1 chr1:31231807-31231827 ( 2) ATTGGACA 1 chrX:63425674-63425694 ( 1) ATTGGCAG 1 chr2:240322715-240322735 ( 4) ATAGGCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTGGCCV MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.52481 E= 2.2e+003 244 -1023 -1023 -1023 -1023 -1023 -1023 236 -114 -1023 -1023 223 -1023 -1023 169 -1023 -1023 -1023 169 -1023 -114 110 -31 -1023 -114 127 -1023 -23 44 42 11 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTGGCCV MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 2.2e+003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.083333 0.000000 0.000000 0.916667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.083333 0.666667 0.250000 0.000000 0.083333 0.750000 0.000000 0.166667 0.250000 0.416667 0.333333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTGGCCV MEME-4 regular expression -------------------------------------------------------------------------------- ATTGG[CG]C[CGA] -------------------------------------------------------------------------------- Time 5.44 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTWTSAA MEME-5 width = 8 sites = 2 llr = 23 E-value = 1.2e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTWTSAA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::5::aa pos.-specific C :::::5:: probability G :::::5:: matrix T aaa5a::: bits 2.4 *** * ** 2.2 *** * ** 2.0 *** * ** 1.7 *** * ** Relative 1.5 ***** ** Entropy 1.2 ***** ** (16.4 bits) 1.0 ***** ** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTTATCAA consensus T G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTWTSAA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr17:15796163-15796183 10 5.59e-06 ATTGATGTC TTTATGAA ATG chr2:227666004-227666024 10 1.15e-05 GATGGCCTG TTTTTCAA GCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTWTSAA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:15796163-15796183 5.6e-06 9_[+5]_3 chr2:227666004-227666024 1.2e-05 9_[+5]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTWTSAA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTWTSAA width=8 seqs=2 chr17:15796163-15796183 ( 10) TTTATGAA 1 chr2:227666004-227666024 ( 10) TTTTTCAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTWTSAA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.81663 E= 1.2e+004 -765 -765 -765 235 -765 -765 -765 235 -765 -765 -765 235 143 -765 -765 135 -765 -765 -765 235 -765 68 69 -765 243 -765 -765 -765 243 -765 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTWTSAA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.2e+004 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTWTSAA MEME-5 regular expression -------------------------------------------------------------------------------- TTT[AT]T[CG]AA -------------------------------------------------------------------------------- Time 6.10 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:47220376-47220396 2.05e-01 20 chr6:94129353-94129373 1.90e-02 6_[+1(6.88e-05)]_6 chr4:102268860-102268880 3.55e-01 20 chr5:139780735-139780755 1.12e-02 11_[+3(5.97e-05)]_1 chr17:79008681-79008701 4.45e-01 20 chr1:155057902-155057922 7.04e-01 20 chr14:91882412-91882432 5.66e-04 3_[+2(7.10e-06)]_9 chr2:9563092-9563112 5.88e-02 20 chr1:247242169-247242189 1.55e-02 1_[+1(1.94e-05)]_11 chr19:12075740-12075760 2.96e-02 12_[+2(3.11e-05)] chrX:1611065-1611085 4.42e-01 20 chrX:14057685-14057705 5.32e-02 20 chr9:119449530-119449550 6.14e-02 20 chr6:109330822-109330842 3.26e-01 20 chr17:58679464-58679484 1.90e-04 2_[+1(7.50e-06)]_10 chr19:12267632-12267652 6.47e-03 10_[+1(1.94e-05)]_2 chr1:7843989-7844009 5.86e-01 20 chr2:219824269-219824289 1.54e-02 20 chr22:25632025-25632045 7.62e-03 20 chr2:222437071-222437091 7.08e-01 20 chrX:74493842-74493862 1.29e-01 20 chr11:118799359-11879937 3.31e-04 20 chr2:43864360-43864380 6.23e-02 20 chr2:196941701-196941721 1.93e-01 20 chr15:44487567-44487587 1.18e-02 20 chr17:33570001-33570021 2.82e-01 20 chr16:84538290-84538310 1.99e-02 20 chr19:19143362-19143382 1.81e-02 9_[+3(4.84e-05)]_3 chrX:47497053-47497073 6.73e-01 20 chr8:80680168-80680188 7.04e-04 10_[+1(3.21e-05)]_2 chr19:56623125-56623145 3.75e-02 20 chr12:6663465-6663485 6.07e-03 10_[+2(1.91e-05)]_2 chr5:179719089-179719109 3.06e-03 20 chr10:102790975-10279099 1.36e-02 3_[+2(7.32e-05)]_9 chr5:96144123-96144143 2.68e-02 20 chr21:32931813-32931833 6.75e-01 20 chr19:19843991-19844011 3.16e-02 20 chr6:116937495-116937515 2.82e-01 20 chr5:65892133-65892153 2.05e-01 20 chr7:99798060-99798080 3.48e-03 1_[+2(7.10e-06)]_11 chr19:4867718-4867738 4.63e-01 20 chrX:80377256-80377276 1.74e-02 20 chr1:164528105-164528125 6.25e-01 20 chr1:167691130-167691150 2.42e-01 20 chr19:1041093-1041113 5.11e-01 20 chr2:45168751-45168771 6.47e-04 8_[+1(3.21e-05)]_4 chr1:185285424-185285444 8.09e-01 20 chr1:200379255-200379275 9.57e-04 11_[+2(7.10e-06)]_1 chr11:64490722-64490742 2.57e-01 20 chr2:240322715-240322735 4.53e-02 20 chr6:15399027-15399047 5.23e-03 10_[+1(1.94e-05)]_2 chr19:18654433-18654453 9.78e-02 20 chr10:102802618-10280263 7.34e-01 20 chr6:62996217-62996237 4.11e-01 20 chr20:17662988-17663008 8.69e-02 20 chr13:44716203-44716223 4.41e-02 20 chr19:11909282-11909302 9.36e-01 20 chr6:32143905-32143925 5.48e-01 20 chr15:43785396-43785416 6.32e-02 20 chr17:15796163-15796183 3.49e-03 9_[+5(5.59e-06)]_3 chr6:132834315-132834335 1.45e-02 4_[+1(1.94e-05)]_8 chr1:10270511-10270531 2.71e-01 20 chr13:110439028-11043904 5.24e-02 20 chr22:37582468-37582488 1.53e-04 8_[+2(7.10e-06)]_4 chr11:86666467-86666487 9.98e-01 20 chr3:100211350-100211370 3.13e-01 20 chr22:50682996-50683016 1.31e-01 20 chr5:14581829-14581849 6.50e-04 3_[+1(3.21e-05)]_9 chr19:8408200-8408220 5.61e-02 20 chr22:23412339-23412359 1.15e-01 20 chr6:79943674-79943694 9.70e-03 12_[+1(7.50e-06)] chr11:119066575-11906659 1.56e-01 20 chr13:41240832-41240852 2.05e-03 7_[+3(3.04e-05)]_5 chr12:53473246-53473266 2.10e-01 20 chr2:98280019-98280039 8.67e-01 20 chr17:17566781-17566801 1.01e-02 3_[+1(6.88e-05)]_9 chr11:32197958-32197978 5.80e-03 11_[+1(1.94e-05)]_1 chr11:613712-613732 4.26e-01 20 chr2:12856905-12856925 6.81e-02 20 chr15:33487008-33487028 6.57e-01 20 chr19:29768244-29768264 3.24e-02 20 chr19:14640075-14640095 8.86e-01 20 chr1:145477009-145477029 4.20e-01 20 chr7:21467651-21467671 4.02e-01 20 chr12:56123506-56123526 9.75e-01 20 chr19:33166158-33166178 8.13e-02 20 chr17:76628195-76628215 9.90e-01 20 chr3:142838578-142838598 3.43e-01 20 chr6:6685769-6685789 6.97e-01 20 chr3:107241735-107241755 4.88e-02 20 chr1:31231807-31231827 4.65e-02 20 chr11:45168761-45168781 1.44e-01 20 chr19:55592108-55592128 6.03e-01 20 chr3:42544046-42544066 1.19e-01 20 chr17:37321271-37321291 6.75e-02 20 chr4:124317869-124317889 9.73e-04 5_[+1(7.50e-06)]_7 chr14:89882544-89882564 3.96e-03 20 chr8:144513040-144513060 6.48e-03 4_[+2(4.99e-05)]_8 chr18:74204988-74205008 5.23e-04 3_[+4(3.22e-05)]_9 chr11:34272880-34272900 1.74e-02 9_[+1(1.94e-05)]_3 chrX:47931291-47931311 6.37e-01 20 chr19:45873931-45873951 6.81e-04 10_[+3(4.17e-05)]_2 chr4:160024173-160024193 2.97e-01 20 chr1:25757271-25757291 4.56e-04 4_[+4(5.24e-05)]_8 chr16:89238027-89238047 7.54e-01 20 chr16:639861-639881 2.10e-01 20 chr12:14927243-14927263 1.62e-01 20 chr9:34989559-34989579 4.33e-01 20 chr10:42863559-42863579 3.17e-02 20 chr20:57580399-57580419 8.04e-01 20 chr13:73633055-73633075 6.86e-01 20 chr1:117664777-117664797 1.34e-01 20 chr20:40247125-40247145 5.24e-01 20 chr21:35014559-35014579 7.04e-05 [+1(3.21e-05)]_12 chr15:37393938-37393958 8.43e-01 20 chr22:29468842-29468862 8.93e-01 20 chr19:7739405-7739425 4.10e-01 20 chr3:9885737-9885757 1.76e-03 20 chr1:11444415-11444435 1.86e-02 20 chr19:4153549-4153569 5.55e-03 20 chr14:94492667-94492687 4.56e-02 20 chr4:78741386-78741406 4.40e-03 8_[+1(7.50e-06)]_4 chr10:104263617-10426363 8.49e-01 20 chr15:86338201-86338221 2.99e-01 20 chr8:145239876-145239896 4.19e-02 12_[+1(1.94e-05)] chr10:28966333-28966353 2.04e-02 3_[+1(9.53e-05)]_9 chr22:30723140-30723160 8.04e-01 20 chr6:27219707-27219727 5.62e-01 20 chr16:67927019-67927039 4.74e-01 20 chr7:150929542-150929562 2.44e-02 8_[+1(6.88e-05)]_4 chr10:45474300-45474320 1.38e-03 2_[+2(7.32e-05)]_10 chr6:36165097-36165117 1.04e-02 8_[+3(1.13e-05)]_4 chr18:48405397-48405417 6.45e-03 8_[+4(3.22e-05)]_4 chr19:13906067-13906087 4.75e-01 20 chr17:73390041-73390061 2.85e-03 4_[+3(3.04e-05)]_8 chr1:27320141-27320161 3.05e-01 20 chr19:39034781-39034801 4.57e-03 12_[+1(3.68e-05)] chr10:80713045-80713065 1.70e-01 20 chr15:78799613-78799633 3.51e-02 20 chr9:128508977-128508997 1.87e-02 20 chr1:198128273-198128293 1.95e-03 12_[+3(1.13e-05)] chr2:198669248-198669268 2.63e-01 20 chr4:16122601-16122621 1.15e-01 20 chr13:20532721-20532741 6.49e-01 20 chr18:11149590-11149610 4.34e-01 20 chr6:474933-474953 9.46e-01 20 chr6:119670974-119670994 1.39e-01 20 chr17:27139553-27139573 4.21e-01 20 chr1:232766000-232766020 7.12e-02 20 chr11:71094705-71094725 2.89e-03 20 chr1:112938791-112938811 1.19e-01 20 chr3:185826987-185827007 4.77e-01 20 chr10:71211196-71211216 1.13e-01 20 chr4:6271467-6271487 1.72e-03 1_[+1(3.21e-05)]_11 chr1:205196993-205197013 1.12e-02 2_[+4(5.24e-05)]_10 chr2:227666004-227666024 5.83e-03 9_[+5(1.15e-05)]_3 chr4:184580394-184580414 1.01e-02 10_[+2(3.11e-05)]_2 chr19:3094326-3094346 2.53e-01 20 chr4:175204403-175204423 7.81e-01 20 chr1:17446021-17446041 8.54e-02 20 chr9:131940625-131940645 1.66e-02 2_[+1(1.94e-05)]_10 chr3:127555483-127555503 6.30e-05 2_[+2(7.10e-06)]_10 chr8:38243939-38243959 1.72e-02 12_[+2(3.11e-05)] chr4:149363796-149363816 5.27e-03 8_[+2(1.91e-05)]_4 chr8:25242933-25242953 7.85e-03 10_[+1(3.68e-05)]_2 chr12:7282936-7282956 6.36e-02 20 chr19:2841343-2841363 5.07e-01 20 chr19:19249322-19249342 2.09e-01 20 chr16:4852985-4853005 6.57e-02 1_[+4(5.24e-05)]_11 chr8:25316019-25316039 2.87e-02 20 chr1:109940654-109940674 3.75e-01 20 chr20:34360218-34360238 8.32e-01 20 chr20:45035332-45035352 9.78e-02 20 chr10:112624560-11262458 3.47e-05 6_[+2(7.10e-06)]_6 chr14:103588550-10358857 2.25e-02 20 chrX:200072-200092 2.71e-02 20 chr19:4065982-4066002 6.88e-01 20 chr3:57261690-57261710 4.10e-02 10_[+3(4.17e-05)]_2 chr15:34657781-34657801 8.02e-01 20 chr4:148764563-148764583 1.81e-01 20 chr6:32862469-32862489 1.07e-02 5_[+1(7.50e-06)]_7 chr11:19138637-19138657 1.56e-02 20 chr3:101497996-101498016 6.99e-01 20 chr10:104261951-10426197 1.70e-02 [+2(4.24e-05)]_12 chr1:161228437-161228457 1.92e-02 20 chr11:535668-535688 2.59e-02 20 chr21:44394750-44394770 4.46e-04 20 chr1:205782365-205782385 7.47e-01 20 chr2:232646056-232646076 1.49e-01 20 chr6:108879811-108879831 1.24e-02 4_[+1(1.94e-05)]_8 chr14:51561957-51561977 4.31e-01 20 chr19:18414408-18414428 1.25e-02 5_[+2(3.11e-05)]_7 chr19:12098344-12098364 3.62e-02 11_[+2(3.11e-05)]_1 chr22:40440284-40440304 2.78e-02 20 chr12:2994638-2994658 3.85e-02 20 chr22:20004471-20004491 3.14e-02 8_[+4(8.44e-05)]_4 chr4:111544352-111544372 1.56e-01 20 chr19:11924997-11925017 8.94e-01 20 chr9:130533746-130533766 5.42e-01 20 chr6:37282847-37282867 5.58e-01 20 chrX:63425674-63425694 5.72e-02 20 chr8:145159270-145159290 3.81e-01 20 chr19:12175428-12175448 2.06e-02 12_[+2(3.11e-05)] chr17:41323141-41323161 1.63e-02 20 chr1:94210306-94210326 2.18e-02 20 chr15:70392096-70392116 1.27e-01 20 chr19:41221059-41221079 9.04e-03 20 chr10:22972427-22972447 1.80e-01 20 chr9:84304874-84304894 7.81e-01 20 chr19:13944567-13944587 5.82e-03 12_[+3(7.87e-05)] chr1:22345712-22345732 3.33e-02 20 chr9:104295778-104295798 5.93e-04 9_[+3(1.13e-05)]_3 chr14:37130982-37131002 7.12e-01 20 chr1:54872133-54872153 3.02e-03 12_[+3(3.04e-05)] chr22:21400118-21400138 5.54e-02 20 chr2:73298497-73298517 3.37e-02 20 chr19:33864531-33864551 6.08e-01 20 chr8:144450906-144450926 3.52e-01 20 chr19:48112004-48112024 7.55e-01 20 chr19:42498469-42498489 5.86e-01 20 chr12:50101446-50101466 5.05e-04 5_[+2(4.24e-05)]_7 chr2:10953001-10953021 8.91e-02 20 chr17:79196875-79196895 1.47e-02 1_[+4(8.44e-05)]_11 chr22:39190223-39190243 1.45e-04 4_[+2(7.32e-05)]_8 chr2:38119575-38119595 9.91e-01 20 chr4:48782464-48782484 1.90e-01 20 chr2:241497449-241497469 9.46e-02 20 chr8:101965160-101965180 2.04e-01 20 chr4:124247-124267 4.53e-01 20 chr16:30959634-30959654 5.79e-01 20 chr19:17400490-17400510 5.50e-01 20 chr4:13546693-13546713 1.68e-02 3_[+1(1.94e-05)]_9 chr7:98594088-98594108 7.20e-03 2_[+1(8.34e-05)]_10 chr19:6372598-6372618 3.06e-02 20 chr10:80733415-80733435 8.73e-01 20 chr19:41082679-41082699 4.42e-02 20 chr14:24740395-24740415 8.26e-01 20 chr2:20412390-20412410 3.22e-04 20 chr4:468066-468086 2.60e-01 20 chr3:9142381-9142401 1.58e-04 5_[+2(7.10e-06)]_7 chr21:32931479-32931499 2.32e-03 [+4(8.44e-05)]_12 chr12:121342481-12134250 1.33e-01 20 chr2:76643111-76643131 4.96e-03 8_[+2(3.11e-05)]_4 chr3:13521639-13521659 1.07e-01 20 chr1:40157165-40157185 1.33e-02 20 chr1:32930602-32930622 1.39e-02 [+4(3.22e-05)]_12 chr5:32313304-32313324 2.20e-02 20 chr6:112194695-112194715 7.91e-02 20 chr4:124318602-124318622 4.02e-01 20 chr16:22386001-22386021 7.56e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n04.farnam.hpc.yale.internal ********************************************************************************