******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/PAX8.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr4:117922372-117922392 1.0000 20 chr7:18461314-18461334 1.0000 20 chr2:172245954-172245974 1.0000 20 chr17:25789842-25789862 1.0000 20 chr2:99776176-99776196 1.0000 20 chr9:92100101-92100121 1.0000 20 chr8:127126507-127126527 1.0000 20 chr4:190779775-190779795 1.0000 20 chr10:90493141-90493161 1.0000 20 chr14:70174894-70174914 1.0000 20 chr1:15857745-15857765 1.0000 20 chr9:69137836-69137856 1.0000 20 chr14:21727758-21727778 1.0000 20 chr1:6499531-6499551 1.0000 20 chr16:21377011-21377031 1.0000 20 chr6:130065550-130065570 1.0000 20 chr9:132795753-132795773 1.0000 20 chr6:167538476-167538496 1.0000 20 chr15:91207052-91207072 1.0000 20 chr21:20813338-20813358 1.0000 20 chr12:99029898-99029918 1.0000 20 chr14:93678920-93678940 1.0000 20 chr10:105241878-10524189 1.0000 20 chr4:185188510-185188530 1.0000 20 chr6:38378244-38378264 1.0000 20 chr3:195774654-195774674 1.0000 20 chr1:25563508-25563528 1.0000 20 chr3:23561209-23561229 1.0000 20 chr21:46579081-46579101 1.0000 20 chr2:64994687-64994707 1.0000 20 chr2:188268905-188268925 1.0000 20 chr10:72172319-72172339 1.0000 20 chr6:3125075-3125095 1.0000 20 chr7:129016467-129016487 1.0000 20 chr2:201985266-201985286 1.0000 20 chr1:150186328-150186348 1.0000 20 chr9:132655451-132655471 1.0000 20 chr5:142739616-142739636 1.0000 20 chr21:30450166-30450186 1.0000 20 chr9:132798890-132798910 1.0000 20 chr9:86578696-86578716 1.0000 20 chr11:108090296-10809031 1.0000 20 chr14:75081728-75081748 1.0000 20 chr5:156570277-156570297 1.0000 20 chr22:41033663-41033683 1.0000 20 chr9:74888503-74888523 1.0000 20 chr7:42909540-42909560 1.0000 20 chr6:33394954-33394974 1.0000 20 chr4:165813444-165813464 1.0000 20 chr2:187350416-187350436 1.0000 20 chr10:82223174-82223194 1.0000 20 chr14:25602177-25602197 1.0000 20 chr11:19850091-19850111 1.0000 20 chr12:12655845-12655865 1.0000 20 chr12:129296056-12929607 1.0000 20 chr13:21714149-21714169 1.0000 20 chr7:65958153-65958173 1.0000 20 chr11:74661615-74661635 1.0000 20 chr12:123209355-12320937 1.0000 20 chr5:158247636-158247656 1.0000 20 chr8:101235395-101235415 1.0000 20 chr13:80001571-80001591 1.0000 20 chr3:186371012-186371032 1.0000 20 chr2:16807206-16807226 1.0000 20 chr19:55767059-55767079 1.0000 20 chr12:105138096-10513811 1.0000 20 chr16:28985710-28985730 1.0000 20 chr12:118335712-11833573 1.0000 20 chr14:48398760-48398780 1.0000 20 chr1:183439931-183439951 1.0000 20 chr5:88376724-88376744 1.0000 20 chr1:109644383-109644403 1.0000 20 chr1:78470913-78470933 1.0000 20 chr17:43140185-43140205 1.0000 20 chr5:115869151-115869171 1.0000 20 chr3:174992564-174992584 1.0000 20 chr20:50145009-50145029 1.0000 20 chr7:24883847-24883867 1.0000 20 chr14:51223255-51223275 1.0000 20 chr15:52312982-52313002 1.0000 20 chr1:200066135-200066155 1.0000 20 chr3:56592110-56592130 1.0000 20 chr22:42320081-42320101 1.0000 20 chr7:76221409-76221429 1.0000 20 chr7:99088955-99088975 1.0000 20 chr1:168139972-168139992 1.0000 20 chr19:59090198-59090218 1.0000 20 chr17:60571592-60571612 1.0000 20 chr2:113299207-113299227 1.0000 20 chr10:62537763-62537783 1.0000 20 chr7:92251280-92251300 1.0000 20 chr17:56495511-56495531 1.0000 20 chr5:102083628-102083648 1.0000 20 chr15:101833493-10183351 1.0000 20 chr3:27401820-27401840 1.0000 20 chr12:21138563-21138583 1.0000 20 chr19:6537999-6538019 1.0000 20 chr9:132725504-132725524 1.0000 20 chr15:93447135-93447155 1.0000 20 chr10:33231193-33231213 1.0000 20 chr6:26045207-26045227 1.0000 20 chr2:99099438-99099458 1.0000 20 chr2:158279648-158279668 1.0000 20 chr7:90053994-90054014 1.0000 20 chr3:174985438-174985458 1.0000 20 chr9:37343003-37343023 1.0000 20 chr6:1940734-1940754 1.0000 20 chr1:100731389-100731409 1.0000 20 chr7:128742839-128742859 1.0000 20 chr2:162762334-162762354 1.0000 20 chr18:3261510-3261530 1.0000 20 chr3:52272663-52272683 1.0000 20 chr12:32834074-32834094 1.0000 20 chr3:121722140-121722160 1.0000 20 chr3:121265243-121265263 1.0000 20 chr14:58894799-58894819 1.0000 20 chr15:58843484-58843504 1.0000 20 chr4:174291034-174291054 1.0000 20 chr6:24936648-24936668 1.0000 20 chr1:32481120-32481140 1.0000 20 chr6:42739537-42739557 1.0000 20 chr8:11346970-11346990 1.0000 20 chr12:46754789-46754809 1.0000 20 chr9:123884374-123884394 1.0000 20 chr15:85951715-85951735 1.0000 20 chr3:7333024-7333044 1.0000 20 chr2:70417441-70417461 1.0000 20 chr22:24408268-24408288 1.0000 20 chr20:4800027-4800047 1.0000 20 chr1:198512994-198513014 1.0000 20 chr19:46210777-46210797 1.0000 20 chr14:32571730-32571750 1.0000 20 chr3:58860219-58860239 1.0000 20 chr13:115046269-11504628 1.0000 20 chr1:85467631-85467651 1.0000 20 chr17:29136394-29136414 1.0000 20 chr17:75184983-75185003 1.0000 20 chr17:47865619-47865639 1.0000 20 chr2:69663833-69663853 1.0000 20 chr8:26487647-26487667 1.0000 20 chr12:14956961-14956981 1.0000 20 chr11:65893339-65893359 1.0000 20 chr2:55278221-55278241 1.0000 20 chr14:50102304-50102324 1.0000 20 chr17:36189860-36189880 1.0000 20 chr2:61372523-61372543 1.0000 20 chr8:101951168-101951188 1.0000 20 chr9:114903011-114903031 1.0000 20 chr1:116654483-116654503 1.0000 20 chr7:50346576-50346596 1.0000 20 chr1:150335761-150335781 1.0000 20 chr18:805115-805135 1.0000 20 chr1:155826606-155826626 1.0000 20 chr12:25158905-25158925 1.0000 20 chr7:140625177-140625197 1.0000 20 chr19:47802737-47802757 1.0000 20 chr1:46798922-46798942 1.0000 20 chr2:157313420-157313440 1.0000 20 chr1:155818328-155818348 1.0000 20 chr8:59508976-59508996 1.0000 20 chr5:57758166-57758186 1.0000 20 chr4:54232542-54232562 1.0000 20 chr3:52321306-52321326 1.0000 20 chr10:14498721-14498741 1.0000 20 chr9:129173947-129173967 1.0000 20 chr11:16759748-16759768 1.0000 20 chrX:123622307-123622327 1.0000 20 chr2:208007990-208008010 1.0000 20 chr1:32397306-32397326 1.0000 20 chr6:74362720-74362740 1.0000 20 chr9:140533985-140534005 1.0000 20 chr3:128995084-128995104 1.0000 20 chr16:27279711-27279731 1.0000 20 chr5:180478170-180478190 1.0000 20 chr2:224760228-224760248 1.0000 20 chr2:64957705-64957725 1.0000 20 chr6:44220754-44220774 1.0000 20 chr5:36877995-36878015 1.0000 20 chr7:130583107-130583127 1.0000 20 chr1:198650660-198650680 1.0000 20 chr7:141349396-141349416 1.0000 20 chr4:156561228-156561248 1.0000 20 chr5:149788389-149788409 1.0000 20 chr3:169650027-169650047 1.0000 20 chr3:37035584-37035604 1.0000 20 chr21:26796557-26796577 1.0000 20 chr9:6894378-6894398 1.0000 20 chr6:34623581-34623601 1.0000 20 chr9:88555454-88555474 1.0000 20 chr4:166176791-166176811 1.0000 20 chr1:43919941-43919961 1.0000 20 chr7:134833242-134833262 1.0000 20 chr5:56825770-56825790 1.0000 20 chr21:42803898-42803918 1.0000 20 chr6:26365763-26365783 1.0000 20 chr17:40439968-40439988 1.0000 20 chr3:46228743-46228763 1.0000 20 chr12:92416076-92416096 1.0000 20 chr16:30082940-30082960 1.0000 20 chr14:70241061-70241081 1.0000 20 chr19:2069985-2070005 1.0000 20 chr4:54101962-54101982 1.0000 20 chr9:5628198-5628218 1.0000 20 chr1:24863182-24863202 1.0000 20 chr4:103750000-103750020 1.0000 20 chr3:5233823-5233843 1.0000 20 chr14:23479149-23479169 1.0000 20 chr12:4324439-4324459 1.0000 20 chr8:128707312-128707332 1.0000 20 chr1:205597682-205597702 1.0000 20 chr12:69204944-69204964 1.0000 20 chr12:125424041-12542406 1.0000 20 chr12:104682209-10468222 1.0000 20 chr5:611216-611236 1.0000 20 chr3:48196837-48196857 1.0000 20 chr13:95879510-95879530 1.0000 20 chr22:32225626-32225646 1.0000 20 chr13:74542037-74542057 1.0000 20 chr6:170821510-170821530 1.0000 20 chr2:238578279-238578299 1.0000 20 chr1:234859470-234859490 1.0000 20 chr2:198369272-198369292 1.0000 20 chr3:43934208-43934228 1.0000 20 chrX:77150613-77150633 1.0000 20 chr7:22862858-22862878 1.0000 20 chr1:28970169-28970189 1.0000 20 chr8:58333589-58333609 1.0000 20 chr15:45490454-45490474 1.0000 20 chr6:89326400-89326420 1.0000 20 chr3:156893321-156893341 1.0000 20 chr2:158270602-158270622 1.0000 20 chr8:23279071-23279091 1.0000 20 chr17:38020894-38020914 1.0000 20 chr10:65115162-65115182 1.0000 20 chr5:138743431-138743451 1.0000 20 chr16:10071611-10071631 1.0000 20 chr3:129119090-129119110 1.0000 20 chr10:94351022-94351042 1.0000 20 chr6:26224650-26224670 1.0000 20 chr17:76692513-76692533 1.0000 20 chr2:8716300-8716320 1.0000 20 chr18:28786793-28786813 1.0000 20 chr8:6590762-6590782 1.0000 20 chr11:65193452-65193472 1.0000 20 chr18:56428913-56428933 1.0000 20 chr2:182451473-182451493 1.0000 20 chr18:4639384-4639404 1.0000 20 chr5:158758354-158758374 1.0000 20 chr15:86127502-86127522 1.0000 20 chr1:32400404-32400424 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_PAX8/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/PAX8.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.276 C 0.218 G 0.22 T 0.286 Background letter frequencies (from file dataset with add-one prior applied): A 0.276 C 0.218 G 0.22 T 0.286 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TGCACACA MEME-1 width = 8 sites = 17 llr = 140 E-value = 5.5e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGCACACA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 11:a:9:9 pos.-specific C ::7:9:8: probability G :9:::::: matrix T 9:3:1121 bits 2.2 2.0 1.8 * 1.5 * **** Relative 1.3 ** ***** Entropy 1.1 ******** (11.9 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGCACACA consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCACACA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr5:611216-611236 11 1.37e-05 GTGCATCCTC TGCACACA CC chr7:50346576-50346596 5 1.37e-05 CATA TGCACACA GAGCGTGC chr5:88376724-88376744 2 1.37e-05 A TGCACACA AGTCATCTGG chr8:127126507-127126527 4 1.37e-05 aca tgcacaca cacatgtac chr8:26487647-26487667 10 3.17e-05 acgcatagg tgtacaca cac chr12:118335712-11833573 2 3.17e-05 T TGTACACA CCGTCTGTGT chr6:26365763-26365783 10 4.97e-05 ACTCGCACA TGCACATA TGG chr2:8716300-8716320 3 6.29e-05 tg agcacaca ccagctacac chr17:36189860-36189880 9 7.71e-05 AGGCTGAA TGCACACT GAGG chr16:10071611-10071631 4 9.43e-05 aca tacacaca cacTTCAAT chr6:167538476-167538496 7 9.43e-05 cctata tacacaca tgcata chr4:54101962-54101982 7 1.12e-04 cgtgtg tgcataca tacgtg chr3:46228743-46228763 6 1.50e-04 TGTCT TGTACATA AGAGTAC chr15:58843484-58843504 9 1.50e-04 CTGGAAAG TGCACTCA TGCG chr17:76692513-76692533 13 1.67e-04 tatacccatg agtacaca chr7:65958153-65958173 11 1.86e-04 CCCTCCCTGT TGTACACT TG chr17:25789842-25789862 12 3.47e-04 ttcctgcatt tgcatata a -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCACACA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:611216-611236 1.4e-05 10_[+1]_2 chr7:50346576-50346596 1.4e-05 4_[+1]_8 chr5:88376724-88376744 1.4e-05 1_[+1]_11 chr8:127126507-127126527 1.4e-05 3_[+1]_9 chr8:26487647-26487667 3.2e-05 9_[+1]_3 chr12:118335712-11833573 3.2e-05 1_[+1]_11 chr6:26365763-26365783 5e-05 9_[+1]_3 chr2:8716300-8716320 6.3e-05 2_[+1]_10 chr17:36189860-36189880 7.7e-05 8_[+1]_4 chr16:10071611-10071631 9.4e-05 3_[+1]_9 chr6:167538476-167538496 9.4e-05 6_[+1]_6 chr4:54101962-54101982 0.00011 6_[+1]_6 chr3:46228743-46228763 0.00015 5_[+1]_7 chr15:58843484-58843504 0.00015 8_[+1]_4 chr17:76692513-76692533 0.00017 12_[+1] chr7:65958153-65958173 0.00019 10_[+1]_2 chr17:25789842-25789862 0.00035 11_[+1]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCACACA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGCACACA width=8 seqs=17 chr5:611216-611236 ( 11) TGCACACA 1 chr7:50346576-50346596 ( 5) TGCACACA 1 chr5:88376724-88376744 ( 2) TGCACACA 1 chr8:127126507-127126527 ( 4) TGCACACA 1 chr8:26487647-26487667 ( 10) TGTACACA 1 chr12:118335712-11833573 ( 2) TGTACACA 1 chr6:26365763-26365783 ( 10) TGCACATA 1 chr2:8716300-8716320 ( 3) AGCACACA 1 chr17:36189860-36189880 ( 9) TGCACACT 1 chr16:10071611-10071631 ( 4) TACACACA 1 chr6:167538476-167538496 ( 7) TACACACA 1 chr4:54101962-54101982 ( 7) TGCATACA 1 chr3:46228743-46228763 ( 6) TGTACATA 1 chr15:58843484-58843504 ( 9) TGCACTCA 1 chr17:76692513-76692533 ( 13) AGTACACA 1 chr7:65958153-65958173 ( 11) TGTACACT 1 chr17:25789842-25789862 ( 12) TGCATATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCACACA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.34207 E= 5.5e-003 -123 -1073 -1073 162 -123 -1073 200 -1073 -1073 169 -1073 4 186 -1073 -1073 -1073 -1073 201 -1073 -128 177 -1073 -1073 -228 -1073 191 -1073 -70 168 -1073 -1073 -128 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCACACA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 5.5e-003 0.117647 0.000000 0.000000 0.882353 0.117647 0.000000 0.882353 0.000000 0.000000 0.705882 0.000000 0.294118 1.000000 0.000000 0.000000 0.000000 0.000000 0.882353 0.000000 0.117647 0.941176 0.000000 0.000000 0.058824 0.000000 0.823529 0.000000 0.176471 0.882353 0.000000 0.000000 0.117647 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCACACA MEME-1 regular expression -------------------------------------------------------------------------------- TG[CT]ACACA -------------------------------------------------------------------------------- Time 1.92 secs. ******************************************************************************** ******************************************************************************** MOTIF YTCAGTGA MEME-2 width = 8 sites = 14 llr = 122 E-value = 1.2e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif YTCAGTGA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::a:::a pos.-specific C 4:9:3::: probability G 111:7:a: matrix T 69:::a:: bits 2.2 * 2.0 * 1.8 * *** 1.5 ** *** Relative 1.3 ******* Entropy 1.1 ******* (12.6 bits) 0.9 ******* 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTCAGTGA consensus C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCAGTGA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr17:43140185-43140205 6 1.88e-05 tgacg ttcagtga agcatga chr1:15857745-15857765 11 1.88e-05 ACTGTTCTGC TTCAGTGA AC chr10:90493141-90493161 5 1.88e-05 ACGG TTCAGTGA TTTCAATG chr4:190779775-190779795 1 1.88e-05 . ttcagtga ctccagcttt chr2:172245954-172245974 9 1.88e-05 ggtgaagg ttcagtga accg chr13:74542037-74542057 13 3.31e-05 tgtatcgagg ctcagtga chr13:115046269-11504628 13 3.31e-05 GTGTTCACGC CTCAGTGA chr2:162762334-162762354 5 3.31e-05 TGAA CTCAGTGA AGCATATC chr6:130065550-130065570 4 5.18e-05 CAC TTCACTGA GCAATTACT chr2:201985266-201985286 3 8.04e-05 TC TGCAGTGA ACTCTTAAGT chr1:150335761-150335781 9 1.10e-04 GGCATGGC CGCAGTGA GGAG chr6:3125075-3125095 1 1.83e-04 . TTGACTGA GCCTCAGCGG chr10:62537763-62537783 9 1.98e-04 TTCTTAAG GTCACTGA AATG chr3:52321306-52321326 4 2.12e-04 CTG CTGACTGA CCGTACAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCAGTGA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:43140185-43140205 1.9e-05 5_[+2]_7 chr1:15857745-15857765 1.9e-05 10_[+2]_2 chr10:90493141-90493161 1.9e-05 4_[+2]_8 chr4:190779775-190779795 1.9e-05 [+2]_12 chr2:172245954-172245974 1.9e-05 8_[+2]_4 chr13:74542037-74542057 3.3e-05 12_[+2] chr13:115046269-11504628 3.3e-05 12_[+2] chr2:162762334-162762354 3.3e-05 4_[+2]_8 chr6:130065550-130065570 5.2e-05 3_[+2]_9 chr2:201985266-201985286 8e-05 2_[+2]_10 chr1:150335761-150335781 0.00011 8_[+2]_4 chr6:3125075-3125095 0.00018 [+2]_12 chr10:62537763-62537783 0.0002 8_[+2]_4 chr3:52321306-52321326 0.00021 3_[+2]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCAGTGA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YTCAGTGA width=8 seqs=14 chr17:43140185-43140205 ( 6) TTCAGTGA 1 chr1:15857745-15857765 ( 11) TTCAGTGA 1 chr10:90493141-90493161 ( 5) TTCAGTGA 1 chr4:190779775-190779795 ( 1) TTCAGTGA 1 chr2:172245954-172245974 ( 9) TTCAGTGA 1 chr13:74542037-74542057 ( 13) CTCAGTGA 1 chr13:115046269-11504628 ( 13) CTCAGTGA 1 chr2:162762334-162762354 ( 5) CTCAGTGA 1 chr6:130065550-130065570 ( 4) TTCACTGA 1 chr2:201985266-201985286 ( 3) TGCAGTGA 1 chr1:150335761-150335781 ( 9) CGCAGTGA 1 chr6:3125075-3125095 ( 1) TTGACTGA 1 chr10:62537763-62537783 ( 9) GTCACTGA 1 chr3:52321306-52321326 ( 4) CTGACTGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCAGTGA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.4605 E= 1.2e-002 -1045 71 -162 100 -1045 -1045 -62 158 -1045 197 -62 -1045 186 -1045 -1045 -1045 -1045 39 170 -1045 -1045 -1045 -1045 180 -1045 -1045 218 -1045 186 -1045 -1045 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCAGTGA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 1.2e-002 0.000000 0.357143 0.071429 0.571429 0.000000 0.000000 0.142857 0.857143 0.000000 0.857143 0.142857 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.285714 0.714286 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCAGTGA MEME-2 regular expression -------------------------------------------------------------------------------- [TC]TCA[GC]TGA -------------------------------------------------------------------------------- Time 2.68 secs. ******************************************************************************** ******************************************************************************** MOTIF CATGCATG MEME-3 width = 8 sites = 11 llr = 97 E-value = 8.3e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif CATGCATG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :9:::9:: pos.-specific C 813:81:1 probability G 2::a2::9 matrix T ::7:::a: bits 2.2 * 2.0 * 1.8 * ** 1.5 ** ***** Relative 1.3 ** ***** Entropy 1.1 ******** (12.7 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CATGCATG consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATGCATG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:25158905-25158925 4 1.43e-05 aac catgcatg tgacaaaag chr10:33231193-33231213 6 1.43e-05 TCATT CATGCATG ACTGTTT chr1:200066135-200066155 1 1.43e-05 . CATGCATG AGTAATTATG chr12:12655845-12655865 9 1.43e-05 CACCGCCC CATGCATG CACA chr15:86127502-86127522 4 5.42e-05 AGT GATGCATG ACTGAGCCA chr11:19850091-19850111 3 5.42e-05 at gatgcatg acggctcact chr3:58860219-58860239 11 7.68e-05 cccgcaaaac cctgcatg tt chr3:48196837-48196857 12 9.89e-05 CAAAGTGAGT CACGGATG A chr7:18461314-18461334 2 9.89e-05 T CACGGATG AGTGAGTTTA chr14:51223255-51223275 4 1.13e-04 AGT CATGCATC ATTGCCTTc chr17:60571592-60571612 6 1.30e-04 gccgt cacgcctg gctaatt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATGCATG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:25158905-25158925 1.4e-05 3_[+3]_9 chr10:33231193-33231213 1.4e-05 5_[+3]_7 chr1:200066135-200066155 1.4e-05 [+3]_12 chr12:12655845-12655865 1.4e-05 8_[+3]_4 chr15:86127502-86127522 5.4e-05 3_[+3]_9 chr11:19850091-19850111 5.4e-05 2_[+3]_10 chr3:58860219-58860239 7.7e-05 10_[+3]_2 chr3:48196837-48196857 9.9e-05 11_[+3]_1 chr7:18461314-18461334 9.9e-05 1_[+3]_11 chr14:51223255-51223275 0.00011 3_[+3]_9 chr17:60571592-60571612 0.00013 5_[+3]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATGCATG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CATGCATG width=8 seqs=11 chr12:25158905-25158925 ( 4) CATGCATG 1 chr10:33231193-33231213 ( 6) CATGCATG 1 chr1:200066135-200066155 ( 1) CATGCATG 1 chr12:12655845-12655865 ( 9) CATGCATG 1 chr15:86127502-86127522 ( 4) GATGCATG 1 chr11:19850091-19850111 ( 3) GATGCATG 1 chr3:58860219-58860239 ( 11) CCTGCATG 1 chr3:48196837-48196857 ( 12) CACGGATG 1 chr7:18461314-18461334 ( 2) CACGGATG 1 chr14:51223255-51223275 ( 4) CATGCATC 1 chr17:60571592-60571612 ( 6) CACGCCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATGCATG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.23087 E= 8.3e+000 -1010 190 -27 -1010 172 -126 -1010 -1010 -1010 32 -1010 134 -1010 -1010 218 -1010 -1010 190 -27 -1010 172 -126 -1010 -1010 -1010 -1010 -1010 180 -1010 -126 205 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATGCATG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 8.3e+000 0.000000 0.818182 0.181818 0.000000 0.909091 0.090909 0.000000 0.000000 0.000000 0.272727 0.000000 0.727273 0.000000 0.000000 1.000000 0.000000 0.000000 0.818182 0.181818 0.000000 0.909091 0.090909 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.090909 0.909091 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATGCATG MEME-3 regular expression -------------------------------------------------------------------------------- CA[TC]GCATG -------------------------------------------------------------------------------- Time 4.64 secs. ******************************************************************************** ******************************************************************************** MOTIF GSGCGCCC MEME-4 width = 8 sites = 2 llr = 23 E-value = 4.7e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSGCGCCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :5:a:aaa probability G a5a:a::: matrix T :::::::: bits 2.2 * ****** 2.0 * ****** 1.8 * ****** 1.5 * ****** Relative 1.3 * ****** Entropy 1.1 ******** (16.5 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCGCGCCC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGCGCCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr4:174291034-174291054 7 1.05e-05 acacgc gcgcgccc gcgaac chr1:150186328-150186348 1 1.05e-05 . GGGCGCCC TGTTGTAAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGCGCCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:174291034-174291054 1.1e-05 6_[+4]_6 chr1:150186328-150186348 1.1e-05 [+4]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGCGCCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSGCGCCC width=8 seqs=2 chr4:174291034-174291054 ( 7) GCGCGCCC 1 chr1:150186328-150186348 ( 1) GGGCGCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGCGCCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.6653 E= 4.7e+003 -765 -765 218 -765 -765 119 118 -765 -765 -765 218 -765 -765 219 -765 -765 -765 -765 218 -765 -765 219 -765 -765 -765 219 -765 -765 -765 219 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGCGCCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 4.7e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGCGCCC MEME-4 regular expression -------------------------------------------------------------------------------- G[CG]GCGCCC -------------------------------------------------------------------------------- Time 7.58 secs. ******************************************************************************** ******************************************************************************** MOTIF AVAGVCAC MEME-5 width = 8 sites = 8 llr = 71 E-value = 8.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AVAGVCAC MEME-5 Description -------------------------------------------------------------------------------- Simplified A 93a:4:a: pos.-specific C 15::3a:a probability G :3:a4::: matrix T :::::::: bits 2.2 * * * 2.0 * * * 1.8 ** *** 1.5 ** *** Relative 1.3 * ** *** Entropy 1.1 * ** *** (12.8 bits) 0.9 * ** *** 0.7 **** *** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ACAGACAC consensus A G sequence G C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AVAGVCAC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr10:94351022-94351042 9 2.38e-05 agctcatt acagacac ccct chr2:198369272-198369292 5 3.42e-05 GAAA ACAGCCAC ATGCTCAC chr4:54232542-54232562 1 3.42e-05 . ACAGCCAC CTTCTCAATC chr3:37035584-37035604 3 7.15e-05 CC AAAGGCAC AATTCATTTT chr3:169650027-169650047 5 7.15e-05 GTGA AGAGACAC CAGAGCTG chr5:180478170-180478190 8 7.15e-05 GATTACA AAAGGCAC GTCCA chr6:1940734-1940754 6 7.15e-05 AAAGA AGAGACAC TGAGAAG chr1:155826606-155826626 1 1.20e-04 . CCAGGCAC CTCAAACACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AVAGVCAC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:94351022-94351042 2.4e-05 8_[+5]_4 chr2:198369272-198369292 3.4e-05 4_[+5]_8 chr4:54232542-54232562 3.4e-05 [+5]_12 chr3:37035584-37035604 7.2e-05 2_[+5]_10 chr3:169650027-169650047 7.2e-05 4_[+5]_8 chr5:180478170-180478190 7.2e-05 7_[+5]_5 chr6:1940734-1940754 7.2e-05 5_[+5]_7 chr1:155826606-155826626 0.00012 [+5]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AVAGVCAC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AVAGVCAC width=8 seqs=8 chr10:94351022-94351042 ( 9) ACAGACAC 1 chr2:198369272-198369292 ( 5) ACAGCCAC 1 chr4:54232542-54232562 ( 1) ACAGCCAC 1 chr3:37035584-37035604 ( 3) AAAGGCAC 1 chr3:169650027-169650047 ( 5) AGAGACAC 1 chr5:180478170-180478190 ( 8) AAAGGCAC 1 chr6:1940734-1940754 ( 6) AGAGACAC 1 chr1:155826606-155826626 ( 1) CCAGGCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AVAGVCAC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.98673 E= 8.6e+003 167 -80 -965 -965 -14 119 19 -965 186 -965 -965 -965 -965 -965 218 -965 44 19 77 -965 -965 219 -965 -965 186 -965 -965 -965 -965 219 -965 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AVAGVCAC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 8.6e+003 0.875000 0.125000 0.000000 0.000000 0.250000 0.500000 0.250000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.375000 0.250000 0.375000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AVAGVCAC MEME-5 regular expression -------------------------------------------------------------------------------- A[CAG]AG[AGC]CAC -------------------------------------------------------------------------------- Time 10.52 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:117922372-117922392 3.48e-01 20 chr7:18461314-18461334 1.41e-02 1_[+3(9.89e-05)]_11 chr2:172245954-172245974 1.87e-02 8_[+2(1.88e-05)]_4 chr17:25789842-25789862 3.79e-02 20 chr2:99776176-99776196 2.29e-01 20 chr9:92100101-92100121 9.37e-01 20 chr8:127126507-127126527 1.26e-05 3_[+1(1.37e-05)]_9 chr4:190779775-190779795 2.50e-03 [+2(1.88e-05)]_12 chr10:90493141-90493161 4.13e-02 4_[+2(1.88e-05)]_8 chr14:70174894-70174914 4.03e-01 20 chr1:15857745-15857765 3.55e-02 10_[+2(1.88e-05)]_2 chr9:69137836-69137856 3.48e-01 20 chr14:21727758-21727778 2.43e-01 20 chr1:6499531-6499551 7.23e-01 20 chr16:21377011-21377031 2.86e-01 20 chr6:130065550-130065570 2.44e-02 3_[+2(5.18e-05)]_9 chr9:132795753-132795773 9.64e-01 20 chr6:167538476-167538496 1.17e-03 6_[+1(9.43e-05)]_6 chr15:91207052-91207072 9.15e-01 20 chr21:20813338-20813358 6.89e-01 20 chr12:99029898-99029918 1.91e-01 20 chr14:93678920-93678940 4.92e-01 20 chr10:105241878-10524189 9.06e-01 20 chr4:185188510-185188530 1.76e-01 20 chr6:38378244-38378264 5.30e-01 20 chr3:195774654-195774674 4.17e-01 20 chr1:25563508-25563528 5.74e-01 20 chr3:23561209-23561229 3.05e-01 20 chr21:46579081-46579101 1.09e-01 20 chr2:64994687-64994707 7.50e-01 20 chr2:188268905-188268925 5.43e-01 20 chr10:72172319-72172339 2.71e-01 20 chr6:3125075-3125095 3.72e-02 20 chr7:129016467-129016487 5.18e-01 20 chr2:201985266-201985286 2.36e-02 2_[+2(8.04e-05)]_10 chr1:150186328-150186348 6.34e-03 [+4(1.05e-05)]_12 chr9:132655451-132655471 8.63e-01 20 chr5:142739616-142739636 3.54e-01 20 chr21:30450166-30450186 3.99e-01 20 chr9:132798890-132798910 8.54e-01 20 chr9:86578696-86578716 8.43e-02 20 chr11:108090296-10809031 3.78e-01 20 chr14:75081728-75081748 6.64e-01 20 chr5:156570277-156570297 1.77e-01 20 chr22:41033663-41033683 6.37e-01 20 chr9:74888503-74888523 4.16e-01 20 chr7:42909540-42909560 1.61e-01 20 chr6:33394954-33394974 6.09e-01 20 chr4:165813444-165813464 5.32e-01 20 chr2:187350416-187350436 2.74e-01 20 chr10:82223174-82223194 1.65e-01 20 chr14:25602177-25602197 4.29e-01 20 chr11:19850091-19850111 1.91e-02 2_[+3(5.42e-05)]_10 chr12:12655845-12655865 1.80e-04 8_[+3(1.43e-05)]_4 chr12:129296056-12929607 1.74e-01 20 chr13:21714149-21714169 9.86e-01 20 chr7:65958153-65958173 1.67e-02 20 chr11:74661615-74661635 6.39e-01 20 chr12:123209355-12320937 5.60e-01 20 chr5:158247636-158247656 3.72e-01 20 chr8:101235395-101235415 6.69e-01 20 chr13:80001571-80001591 6.19e-01 20 chr3:186371012-186371032 4.07e-01 20 chr2:16807206-16807226 7.79e-01 20 chr19:55767059-55767079 5.82e-02 20 chr12:105138096-10513811 9.83e-01 20 chr16:28985710-28985730 3.05e-01 20 chr12:118335712-11833573 7.88e-03 1_[+1(3.17e-05)]_11 chr14:48398760-48398780 2.88e-01 20 chr1:183439931-183439951 9.50e-01 20 chr5:88376724-88376744 1.88e-03 1_[+1(1.37e-05)]_11 chr1:109644383-109644403 1.94e-01 20 chr1:78470913-78470933 6.36e-01 20 chr17:43140185-43140205 2.44e-03 5_[+2(1.88e-05)]_7 chr5:115869151-115869171 6.34e-01 20 chr3:174992564-174992584 3.18e-01 20 chr20:50145009-50145029 6.96e-02 20 chr7:24883847-24883867 9.47e-01 20 chr14:51223255-51223275 5.81e-02 20 chr15:52312982-52313002 9.10e-01 20 chr1:200066135-200066155 8.60e-03 [+3(1.43e-05)]_12 chr3:56592110-56592130 9.56e-01 20 chr22:42320081-42320101 2.17e-01 20 chr7:76221409-76221429 6.41e-02 20 chr7:99088955-99088975 3.23e-01 20 chr1:168139972-168139992 7.49e-01 20 chr19:59090198-59090218 7.41e-01 20 chr17:60571592-60571612 2.95e-02 20 chr2:113299207-113299227 2.62e-01 20 chr10:62537763-62537783 3.55e-02 20 chr7:92251280-92251300 2.19e-01 20 chr17:56495511-56495531 3.97e-01 20 chr5:102083628-102083648 3.38e-01 20 chr15:101833493-10183351 1.85e-01 20 chr3:27401820-27401840 6.07e-02 20 chr12:21138563-21138583 2.84e-01 20 chr19:6537999-6538019 4.66e-01 20 chr9:132725504-132725524 3.82e-01 20 chr15:93447135-93447155 5.85e-01 20 chr10:33231193-33231213 7.96e-03 5_[+3(1.43e-05)]_7 chr6:26045207-26045227 9.93e-01 20 chr2:99099438-99099458 5.35e-01 20 chr2:158279648-158279668 7.41e-01 20 chr7:90053994-90054014 4.37e-01 20 chr3:174985438-174985458 2.74e-01 20 chr9:37343003-37343023 9.71e-01 20 chr6:1940734-1940754 1.27e-02 5_[+5(7.15e-05)]_7 chr1:100731389-100731409 6.11e-02 20 chr7:128742839-128742859 2.76e-01 20 chr2:162762334-162762354 3.69e-03 4_[+2(3.31e-05)]_8 chr18:3261510-3261530 9.96e-01 20 chr3:52272663-52272683 5.88e-02 20 chr12:32834074-32834094 8.94e-01 20 chr3:121722140-121722160 6.44e-01 20 chr3:121265243-121265263 7.94e-01 20 chr14:58894799-58894819 6.64e-01 20 chr15:58843484-58843504 9.27e-05 20 chr4:174291034-174291054 2.11e-03 6_[+4(1.05e-05)]_6 chr6:24936648-24936668 1.00e+00 20 chr1:32481120-32481140 8.93e-01 20 chr6:42739537-42739557 8.40e-01 20 chr8:11346970-11346990 8.59e-01 20 chr12:46754789-46754809 3.96e-01 20 chr9:123884374-123884394 6.14e-01 20 chr15:85951715-85951735 3.73e-01 20 chr3:7333024-7333044 2.10e-01 20 chr2:70417441-70417461 8.99e-01 20 chr22:24408268-24408288 1.13e-01 20 chr20:4800027-4800047 7.52e-02 20 chr1:198512994-198513014 1.65e-01 20 chr19:46210777-46210797 1.52e-01 20 chr14:32571730-32571750 9.82e-02 20 chr3:58860219-58860239 2.22e-02 10_[+3(7.68e-05)]_2 chr13:115046269-11504628 1.37e-04 12_[+2(3.31e-05)] chr1:85467631-85467651 6.20e-01 20 chr17:29136394-29136414 5.95e-01 20 chr17:75184983-75185003 7.17e-01 20 chr17:47865619-47865639 5.15e-01 20 chr2:69663833-69663853 7.41e-01 20 chr8:26487647-26487667 6.33e-04 9_[+1(3.17e-05)]_3 chr12:14956961-14956981 4.78e-01 20 chr11:65893339-65893359 6.32e-01 20 chr2:55278221-55278241 9.99e-01 20 chr14:50102304-50102324 5.49e-02 20 chr17:36189860-36189880 2.14e-04 8_[+1(7.71e-05)]_4 chr2:61372523-61372543 5.96e-01 20 chr8:101951168-101951188 3.28e-01 20 chr9:114903011-114903031 8.21e-01 20 chr1:116654483-116654503 6.74e-01 20 chr7:50346576-50346596 2.25e-04 4_[+1(1.37e-05)]_8 chr1:150335761-150335781 6.74e-03 20 chr18:805115-805135 2.02e-01 20 chr1:155826606-155826626 1.53e-02 20 chr12:25158905-25158925 9.68e-03 3_[+3(1.43e-05)]_9 chr7:140625177-140625197 7.68e-01 20 chr19:47802737-47802757 6.34e-02 20 chr1:46798922-46798942 3.58e-01 20 chr2:157313420-157313440 1.27e-01 20 chr1:155818328-155818348 6.01e-01 20 chr8:59508976-59508996 9.03e-01 20 chr5:57758166-57758186 9.20e-01 20 chr4:54232542-54232562 2.95e-02 [+5(3.42e-05)]_12 chr3:52321306-52321326 1.68e-02 20 chr10:14498721-14498741 2.89e-01 20 chr9:129173947-129173967 5.06e-01 20 chr11:16759748-16759768 5.75e-01 20 chrX:123622307-123622327 4.81e-01 20 chr2:208007990-208008010 9.00e-01 20 chr1:32397306-32397326 7.71e-01 20 chr6:74362720-74362740 7.30e-01 20 chr9:140533985-140534005 4.72e-01 20 chr3:128995084-128995104 3.45e-01 20 chr16:27279711-27279731 9.53e-01 20 chr5:180478170-180478190 9.41e-03 7_[+5(7.15e-05)]_5 chr2:224760228-224760248 2.37e-01 20 chr2:64957705-64957725 2.79e-02 20 chr6:44220754-44220774 7.72e-01 20 chr5:36877995-36878015 9.95e-01 20 chr7:130583107-130583127 3.28e-01 20 chr1:198650660-198650680 8.49e-01 20 chr7:141349396-141349416 8.75e-01 20 chr4:156561228-156561248 3.44e-01 20 chr5:149788389-149788409 2.25e-01 20 chr3:169650027-169650047 1.29e-02 4_[+5(7.15e-05)]_8 chr3:37035584-37035604 3.54e-02 2_[+5(7.15e-05)]_10 chr21:26796557-26796577 9.80e-01 20 chr9:6894378-6894398 2.50e-01 20 chr6:34623581-34623601 4.43e-01 20 chr9:88555454-88555474 8.93e-01 20 chr4:166176791-166176811 2.93e-01 20 chr1:43919941-43919961 8.79e-01 20 chr7:134833242-134833262 7.27e-01 20 chr5:56825770-56825790 8.34e-01 20 chr21:42803898-42803918 1.00e+00 20 chr6:26365763-26365783 2.02e-04 9_[+1(4.97e-05)]_3 chr17:40439968-40439988 5.07e-01 20 chr3:46228743-46228763 1.76e-01 20 chr12:92416076-92416096 1.15e-01 20 chr16:30082940-30082960 9.76e-01 20 chr14:70241061-70241081 9.42e-01 20 chr19:2069985-2070005 2.38e-01 20 chr4:54101962-54101982 1.24e-02 20 chr9:5628198-5628218 9.29e-01 20 chr1:24863182-24863202 5.02e-02 20 chr4:103750000-103750020 7.38e-01 20 chr3:5233823-5233843 9.63e-01 20 chr14:23479149-23479169 9.41e-01 20 chr12:4324439-4324459 9.78e-01 20 chr8:128707312-128707332 3.21e-01 20 chr1:205597682-205597702 7.94e-01 20 chr12:69204944-69204964 5.93e-01 20 chr12:125424041-12542406 5.23e-01 20 chr12:104682209-10468222 3.71e-01 20 chr5:611216-611236 3.97e-04 10_[+1(1.37e-05)]_2 chr3:48196837-48196857 2.72e-03 11_[+3(9.89e-05)]_1 chr13:95879510-95879530 9.21e-01 20 chr22:32225626-32225646 3.19e-01 20 chr13:74542037-74542057 3.98e-03 12_[+2(3.31e-05)] chr6:170821510-170821530 3.88e-01 20 chr2:238578279-238578299 5.90e-01 20 chr1:234859470-234859490 9.92e-01 20 chr2:198369272-198369292 8.06e-03 4_[+5(3.42e-05)]_8 chr3:43934208-43934228 7.85e-01 20 chrX:77150613-77150633 4.83e-01 20 chr7:22862858-22862878 9.98e-01 20 chr1:28970169-28970189 1.34e-01 20 chr8:58333589-58333609 7.36e-01 20 chr15:45490454-45490474 5.52e-01 20 chr6:89326400-89326420 2.45e-01 20 chr3:156893321-156893341 5.63e-01 20 chr2:158270602-158270622 9.12e-01 20 chr8:23279071-23279091 3.73e-01 20 chr17:38020894-38020914 6.68e-01 20 chr10:65115162-65115182 7.58e-01 20 chr5:138743431-138743451 4.95e-01 20 chr16:10071611-10071631 2.96e-03 3_[+1(9.43e-05)]_9 chr3:129119090-129119110 4.55e-02 20 chr10:94351022-94351042 2.19e-03 8_[+5(2.38e-05)]_4 chr6:26224650-26224670 3.57e-01 20 chr17:76692513-76692533 2.58e-02 20 chr2:8716300-8716320 1.32e-03 2_[+1(6.29e-05)]_10 chr18:28786793-28786813 1.88e-01 20 chr8:6590762-6590782 8.27e-01 20 chr11:65193452-65193472 8.99e-01 20 chr18:56428913-56428933 1.38e-01 20 chr2:182451473-182451493 8.64e-01 20 chr18:4639384-4639404 3.71e-01 20 chr5:158758354-158758374 8.15e-01 20 chr15:86127502-86127522 6.36e-03 3_[+3(5.42e-05)]_9 chr1:32400404-32400424 9.16e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n09.farnam.hpc.yale.internal ********************************************************************************