******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/PAX5.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr5:148521027-148521047 1.0000 20 chr5:150590720-150590740 1.0000 20 chr2:10554268-10554288 1.0000 20 chr1:116272611-116272631 1.0000 20 chr7:111721284-111721304 1.0000 20 chr1:110890000-110890020 1.0000 20 chr15:60971033-60971053 1.0000 20 chr7:4729512-4729532 1.0000 20 chr7:105409743-105409763 1.0000 20 chr3:186371018-186371038 1.0000 20 chr4:153516840-153516860 1.0000 20 chr7:98271537-98271557 1.0000 20 chr17:76362715-76362735 1.0000 20 chr2:27886271-27886291 1.0000 20 chr15:76196887-76196907 1.0000 20 chr12:12867239-12867259 1.0000 20 chrX:40029279-40029299 1.0000 20 chr14:25602177-25602197 1.0000 20 chr7:130583068-130583088 1.0000 20 chr6:2750402-2750422 1.0000 20 chr19:1263444-1263464 1.0000 20 chr10:44755942-44755962 1.0000 20 chr11:72533746-72533766 1.0000 20 chr8:70468665-70468685 1.0000 20 chr19:42708071-42708091 1.0000 20 chr16:74486365-74486385 1.0000 20 chr15:100296143-10029616 1.0000 20 chr2:152719399-152719419 1.0000 20 chr22:35876261-35876281 1.0000 20 chr20:17940424-17940444 1.0000 20 chr2:96899740-96899760 1.0000 20 chr8:104186115-104186135 1.0000 20 chr8:144461995-144462015 1.0000 20 chr10:131350521-13135054 1.0000 20 chr11:16635347-16635367 1.0000 20 chr21:44789138-44789158 1.0000 20 chr6:146284981-146285001 1.0000 20 chr2:224760196-224760216 1.0000 20 chr15:84649591-84649611 1.0000 20 chr20:40302353-40302373 1.0000 20 chr2:206546671-206546691 1.0000 20 chr9:87624328-87624348 1.0000 20 chr19:17009283-17009303 1.0000 20 chr20:33543166-33543186 1.0000 20 chr16:49563736-49563756 1.0000 20 chr20:3780605-3780625 1.0000 20 chr11:74661627-74661647 1.0000 20 chr19:55767070-55767090 1.0000 20 chr16:87796083-87796103 1.0000 20 chr13:114812945-11481296 1.0000 20 chr9:132032602-132032622 1.0000 20 chr17:80818157-80818177 1.0000 20 chr8:129005635-129005655 1.0000 20 chr1:206899103-206899123 1.0000 20 chr3:196750316-196750336 1.0000 20 chr15:90775506-90775526 1.0000 20 chr14:73736911-73736931 1.0000 20 chr11:118741591-11874161 1.0000 20 chr19:344962-344982 1.0000 20 chr1:109655427-109655447 1.0000 20 chr2:20778736-20778756 1.0000 20 chr5:10284254-10284274 1.0000 20 chrX:100603737-100603757 1.0000 20 chr4:26863138-26863158 1.0000 20 chr14:59741847-59741867 1.0000 20 chr17:63175713-63175733 1.0000 20 chr5:40571012-40571032 1.0000 20 chr22:36499214-36499234 1.0000 20 chr19:38469670-38469690 1.0000 20 chr10:72639943-72639963 1.0000 20 chr5:79783822-79783842 1.0000 20 chr11:8555037-8555057 1.0000 20 chr3:16416360-16416380 1.0000 20 chr6:2659343-2659363 1.0000 20 chr5:6188634-6188654 1.0000 20 chr19:30164034-30164054 1.0000 20 chr6:4789606-4789626 1.0000 20 chr2:55275069-55275089 1.0000 20 chr10:11491050-11491070 1.0000 20 chr10:80063341-80063361 1.0000 20 chr7:152038307-152038327 1.0000 20 chr1:24863180-24863200 1.0000 20 chr16:28943201-28943221 1.0000 20 chr3:98731071-98731091 1.0000 20 chr12:123122563-12312258 1.0000 20 chr19:18209778-18209798 1.0000 20 chr1:20539604-20539624 1.0000 20 chr1:167772706-167772726 1.0000 20 chr22:37908259-37908279 1.0000 20 chr21:43956164-43956184 1.0000 20 chr14:51256654-51256674 1.0000 20 chr10:5882420-5882440 1.0000 20 chr3:122824626-122824646 1.0000 20 chr6:41702109-41702129 1.0000 20 chr6:2232943-2232963 1.0000 20 chr3:130612928-130612948 1.0000 20 chr2:15282380-15282400 1.0000 20 chr2:238578316-238578336 1.0000 20 chrX:106709374-106709394 1.0000 20 chr15:86127486-86127506 1.0000 20 chr15:86236271-86236291 1.0000 20 chr9:79008734-79008754 1.0000 20 chr17:43380163-43380183 1.0000 20 chr9:5439015-5439035 1.0000 20 chr20:44728312-44728332 1.0000 20 chr4:2834450-2834470 1.0000 20 chr1:151224302-151224322 1.0000 20 chr3:45637989-45638009 1.0000 20 chr1:186051618-186051638 1.0000 20 chr16:28204670-28204690 1.0000 20 chr19:57954840-57954860 1.0000 20 chr7:28610053-28610073 1.0000 20 chr19:2086729-2086749 1.0000 20 chr13:41163985-41164005 1.0000 20 chr13:100028530-10002855 1.0000 20 chr9:95900781-95900801 1.0000 20 chr1:31203332-31203352 1.0000 20 chr11:111288023-11128804 1.0000 20 chr9:129173951-129173971 1.0000 20 chr2:235409224-235409244 1.0000 20 chr2:12256497-12256517 1.0000 20 chr22:33695759-33695779 1.0000 20 chr12:111074503-11107452 1.0000 20 chr17:28256976-28256996 1.0000 20 chr1:211433620-211433640 1.0000 20 chr7:16685307-16685327 1.0000 20 chr10:111716965-11171698 1.0000 20 chr16:4896655-4896675 1.0000 20 chr12:131917258-13191727 1.0000 20 chr7:97829853-97829873 1.0000 20 chr15:82158661-82158681 1.0000 20 chr19:16557127-16557147 1.0000 20 chr15:31618818-31618838 1.0000 20 chr6:107150470-107150490 1.0000 20 chr19:18280576-18280596 1.0000 20 chr15:44487550-44487570 1.0000 20 chr10:120790338-12079035 1.0000 20 chr22:35485302-35485322 1.0000 20 chr2:33431239-33431259 1.0000 20 chr15:89164922-89164942 1.0000 20 chr20:49454108-49454128 1.0000 20 chr16:55505577-55505597 1.0000 20 chr15:68055321-68055341 1.0000 20 chr11:8958842-8958862 1.0000 20 chr12:53718666-53718686 1.0000 20 chr7:121081116-121081136 1.0000 20 chr16:1764195-1764215 1.0000 20 chr2:169568773-169568793 1.0000 20 chr15:99619485-99619505 1.0000 20 chr18:10685700-10685720 1.0000 20 chr16:11402884-11402904 1.0000 20 chr12:49741289-49741309 1.0000 20 chr10:94517155-94517175 1.0000 20 chr11:118972545-11897256 1.0000 20 chr13:50145841-50145861 1.0000 20 chr19:45240763-45240783 1.0000 20 chr1:2343721-2343741 1.0000 20 chr16:84674958-84674978 1.0000 20 chr19:40864792-40864812 1.0000 20 chr18:21003257-21003277 1.0000 20 chrX:149369313-149369333 1.0000 20 chr2:103126400-103126420 1.0000 20 chr16:67469223-67469243 1.0000 20 chr10:22888184-22888204 1.0000 20 chr13:111364699-11136471 1.0000 20 chr8:128707325-128707345 1.0000 20 chr9:112185075-112185095 1.0000 20 chr4:154006487-154006507 1.0000 20 chr12:51318249-51318269 1.0000 20 chr3:59232672-59232692 1.0000 20 chr6:18122903-18122923 1.0000 20 chr1:161146754-161146774 1.0000 20 chr8:101484939-101484959 1.0000 20 chr2:231122664-231122684 1.0000 20 chr22:41024885-41024905 1.0000 20 chr19:10213617-10213637 1.0000 20 chr21:45626836-45626856 1.0000 20 chr17:76705310-76705330 1.0000 20 chr2:187351423-187351443 1.0000 20 chr17:47271562-47271582 1.0000 20 chr22:38055318-38055338 1.0000 20 chr5:54198780-54198800 1.0000 20 chr7:102049070-102049090 1.0000 20 chr19:11877698-11877718 1.0000 20 chr14:96128381-96128401 1.0000 20 chr10:82223174-82223194 1.0000 20 chr17:65571214-65571234 1.0000 20 chr3:59248132-59248152 1.0000 20 chr14:68751807-68751827 1.0000 20 chr2:98644237-98644257 1.0000 20 chr11:116934001-11693402 1.0000 20 chr2:8685232-8685252 1.0000 20 chr14:78915003-78915023 1.0000 20 chr7:65670214-65670234 1.0000 20 chr22:44460071-44460091 1.0000 20 chr6:15359185-15359205 1.0000 20 chr6:34856999-34857019 1.0000 20 chr21:45627345-45627365 1.0000 20 chr21:38929805-38929825 1.0000 20 chr19:18518961-18518981 1.0000 20 chr7:139912536-139912556 1.0000 20 chr6:16238733-16238753 1.0000 20 chr12:28343735-28343755 1.0000 20 chr1:168473874-168473894 1.0000 20 chr11:130724576-13072459 1.0000 20 chr7:6676876-6676896 1.0000 20 chr5:77590543-77590563 1.0000 20 chr3:183967533-183967553 1.0000 20 chr7:150148373-150148393 1.0000 20 chr17:76286023-76286043 1.0000 20 chr19:1269041-1269061 1.0000 20 chr4:8194638-8194658 1.0000 20 chr6:106551752-106551772 1.0000 20 chr20:61733777-61733797 1.0000 20 chr15:99525758-99525778 1.0000 20 chr6:33561004-33561024 1.0000 20 chr12:9800970-9800990 1.0000 20 chr3:169650047-169650067 1.0000 20 chr5:141489730-141489750 1.0000 20 chr5:132441649-132441669 1.0000 20 chr12:68513665-68513685 1.0000 20 chr12:47750255-47750275 1.0000 20 chr4:8200663-8200683 1.0000 20 chr10:114602813-11460283 1.0000 20 chr22:36851314-36851334 1.0000 20 chr8:97198968-97198988 1.0000 20 chr10:121452978-12145299 1.0000 20 chr6:32657524-32657544 1.0000 20 chr11:102604136-10260415 1.0000 20 chr11:134098673-13409869 1.0000 20 chr15:41099750-41099770 1.0000 20 chr1:12128710-12128730 1.0000 20 chr20:25039020-25039040 1.0000 20 chr3:194412895-194412915 1.0000 20 chr2:151467391-151467411 1.0000 20 chr12:4300999-4301019 1.0000 20 chr8:142046299-142046319 1.0000 20 chr7:137602206-137602226 1.0000 20 chr22:26169094-26169114 1.0000 20 chr12:3861539-3861559 1.0000 20 chr11:61495994-61496014 1.0000 20 chr21:42803906-42803926 1.0000 20 chr16:88878518-88878538 1.0000 20 chr12:54144866-54144886 1.0000 20 chr20:20447297-20447317 1.0000 20 chr21:45775390-45775410 1.0000 20 chr7:112758715-112758735 1.0000 20 chr22:47131095-47131115 1.0000 20 chr11:1876377-1876397 1.0000 20 chr8:29087155-29087175 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_PAX5/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/PAX5.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.206 C 0.293 G 0.294 T 0.207 Background letter frequencies (from file dataset with add-one prior applied): A 0.206 C 0.293 G 0.294 T 0.207 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CAGSCAWG MEME-1 width = 8 sites = 31 llr = 215 E-value = 1.3e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGSCAWG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :a:::54: pos.-specific C a:25a2:: probability G ::64:2:a matrix T ::21:16: bits 2.3 * 2.1 * 1.8 ** * * 1.6 ** * * Relative 1.4 ** * ** Entropy 1.1 ** * ** (10.0 bits) 0.9 ** * ** 0.7 ** * ** 0.5 ***** ** 0.2 ******** 0.0 -------- Multilevel CAGCCATG consensus TG GA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGSCAWG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr13:100028530-10002855 5 1.91e-05 CAGC CAGCCATG TGGAAGTG chr21:43956164-43956184 2 1.91e-05 G CAGCCATG CATGGCGGGT chr13:111364699-11136471 12 5.73e-05 GAAAAGCAGG CAGCCAAG C chr18:21003257-21003277 11 5.73e-05 ttcactgacc cagccaag cA chr19:18209778-18209798 10 5.73e-05 TAGAGGAGG CAGCCAAG GGT chr7:152038307-152038327 11 5.73e-05 cagaactgcc cagccaag cc chr7:130583068-130583088 12 5.73e-05 CTTGCTTGGG CAGCCAAG C chr3:169650047-169650067 9 1.03e-04 GGGGCAAT CATGCATG CCAT chr21:45627345-45627365 9 2.04e-04 TGGCTGCC CAGGCGTG GGTT chr6:18122903-18122923 1 2.04e-04 . CAGTCATG GTCACGGGGT chr2:15282380-15282400 11 2.04e-04 TGAGAGCAGC CAGCCTTG AC chr1:12128710-12128730 9 2.36e-04 TTTGGTGA CATGCAAG TATT chr5:141489730-141489750 1 2.83e-04 . CAGGCTTG GACTCCCAAA chr10:94517155-94517175 3 2.83e-04 CC CAGCCCTG CTGCACTAGG chr19:17009283-17009303 11 3.29e-04 TGTGTGTGTG CACGCATG GC chr8:144461995-144462015 8 3.29e-04 CAGGTGG CAGCCGAG TACAG chr16:87796083-87796103 5 3.56e-04 AGCC CAGGCCTG GGCCGTCA chr20:61733777-61733797 5 4.35e-04 CCAC CAGGCGAG ACGGTCAC chr1:211433620-211433640 4 4.35e-04 AGG CATCCGTG GCGGGGAGG chr17:63175713-63175733 9 4.35e-04 GGGTCACC CATCCGTG ACCC chr2:152719399-152719419 12 4.35e-04 CATGGATGCA CAGTCAAG T chr10:121452978-12145299 7 4.54e-04 cgcctc cacccaag gcatgg chr4:8200663-8200683 2 5.43e-04 g catgcgtg tgtgtgtgtg chr11:72533746-72533766 10 5.43e-04 AGGAGCCTG CATGCGTG ACC chr1:116272611-116272631 9 5.43e-04 AGTGGAAC CATCCTTG GCCC chr19:1269041-1269061 12 6.21e-04 TTCCCCGCCG CAGGCCAG G chr20:40302353-40302373 4 6.21e-04 ccg caggccag aagttccgc chr7:28610053-28610073 7 8.68e-04 GCTGCC CAACCATG ACACCA chr5:6188634-6188654 12 8.68e-04 GGAGCGAGAC CACTCATG A chr7:4729512-4729532 9 9.85e-04 GGGTGGGT CACGCTTG GCTG chr15:68055321-68055341 5 1.07e-03 ttgt cacgcctg gcagccca -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGSCAWG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr13:100028530-10002855 1.9e-05 4_[+1]_8 chr21:43956164-43956184 1.9e-05 1_[+1]_11 chr13:111364699-11136471 5.7e-05 11_[+1]_1 chr18:21003257-21003277 5.7e-05 10_[+1]_2 chr19:18209778-18209798 5.7e-05 9_[+1]_3 chr7:152038307-152038327 5.7e-05 10_[+1]_2 chr7:130583068-130583088 5.7e-05 11_[+1]_1 chr3:169650047-169650067 0.0001 8_[+1]_4 chr21:45627345-45627365 0.0002 8_[+1]_4 chr6:18122903-18122923 0.0002 [+1]_12 chr2:15282380-15282400 0.0002 10_[+1]_2 chr1:12128710-12128730 0.00024 8_[+1]_4 chr5:141489730-141489750 0.00028 [+1]_12 chr10:94517155-94517175 0.00028 2_[+1]_10 chr19:17009283-17009303 0.00033 10_[+1]_2 chr8:144461995-144462015 0.00033 7_[+1]_5 chr16:87796083-87796103 0.00036 4_[+1]_8 chr20:61733777-61733797 0.00044 4_[+1]_8 chr1:211433620-211433640 0.00044 3_[+1]_9 chr17:63175713-63175733 0.00044 8_[+1]_4 chr2:152719399-152719419 0.00044 11_[+1]_1 chr10:121452978-12145299 0.00045 6_[+1]_6 chr4:8200663-8200683 0.00054 1_[+1]_11 chr11:72533746-72533766 0.00054 9_[+1]_3 chr1:116272611-116272631 0.00054 8_[+1]_4 chr19:1269041-1269061 0.00062 11_[+1]_1 chr20:40302353-40302373 0.00062 3_[+1]_9 chr7:28610053-28610073 0.00087 6_[+1]_6 chr5:6188634-6188654 0.00087 11_[+1]_1 chr7:4729512-4729532 0.00098 8_[+1]_4 chr15:68055321-68055341 0.0011 4_[+1]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGSCAWG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGSCAWG width=8 seqs=31 chr13:100028530-10002855 ( 5) CAGCCATG 1 chr21:43956164-43956184 ( 2) CAGCCATG 1 chr13:111364699-11136471 ( 12) CAGCCAAG 1 chr18:21003257-21003277 ( 11) CAGCCAAG 1 chr19:18209778-18209798 ( 10) CAGCCAAG 1 chr7:152038307-152038327 ( 11) CAGCCAAG 1 chr7:130583068-130583088 ( 12) CAGCCAAG 1 chr3:169650047-169650067 ( 9) CATGCATG 1 chr21:45627345-45627365 ( 9) CAGGCGTG 1 chr6:18122903-18122923 ( 1) CAGTCATG 1 chr2:15282380-15282400 ( 11) CAGCCTTG 1 chr1:12128710-12128730 ( 9) CATGCAAG 1 chr5:141489730-141489750 ( 1) CAGGCTTG 1 chr10:94517155-94517175 ( 3) CAGCCCTG 1 chr19:17009283-17009303 ( 11) CACGCATG 1 chr8:144461995-144462015 ( 8) CAGCCGAG 1 chr16:87796083-87796103 ( 5) CAGGCCTG 1 chr20:61733777-61733797 ( 5) CAGGCGAG 1 chr1:211433620-211433640 ( 4) CATCCGTG 1 chr17:63175713-63175733 ( 9) CATCCGTG 1 chr2:152719399-152719419 ( 12) CAGTCAAG 1 chr10:121452978-12145299 ( 7) CACCCAAG 1 chr4:8200663-8200683 ( 2) CATGCGTG 1 chr11:72533746-72533766 ( 10) CATGCGTG 1 chr1:116272611-116272631 ( 9) CATCCTTG 1 chr19:1269041-1269061 ( 12) CAGGCCAG 1 chr20:40302353-40302373 ( 4) CAGGCCAG 1 chr7:28610053-28610073 ( 7) CAACCATG 1 chr5:6188634-6188654 ( 12) CACTCATG 1 chr7:4729512-4729532 ( 9) CACGCTTG 1 chr15:68055321-68055341 ( 5) CACGCCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGSCAWG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.42938 E= 1.3e-003 -1160 177 -1160 -1160 228 -1160 -1160 -1160 -267 -86 98 12 -1160 72 51 -110 -1160 177 -1160 -1160 123 -86 -38 -68 91 -1160 -1160 156 -1160 -1160 177 -1160 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGSCAWG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 31 E= 1.3e-003 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.032258 0.161290 0.580645 0.225806 0.000000 0.483871 0.419355 0.096774 0.000000 1.000000 0.000000 0.000000 0.483871 0.161290 0.225806 0.129032 0.387097 0.000000 0.000000 0.612903 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGSCAWG MEME-1 regular expression -------------------------------------------------------------------------------- CA[GT][CG]C[AG][TA]G -------------------------------------------------------------------------------- Time 2.10 secs. ******************************************************************************** ******************************************************************************** MOTIF CASAWGTG MEME-2 width = 8 sites = 18 llr = 139 E-value = 1.3e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CASAWGTG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :a1942:: pos.-specific C a:6112:: probability G ::3:27:9 matrix T ::::3:a1 bits 2.3 * * 2.1 * * * 1.8 ** * * 1.6 ** * * Relative 1.4 ** * ** Entropy 1.1 ** * ** (11.1 bits) 0.9 ** * ** 0.7 **** *** 0.5 **** *** 0.2 ******** 0.0 -------- Multilevel CACAAGTG consensus G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASAWGTG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr10:111716965-11171698 3 1.34e-05 TG CACAAGTG CTACTGAGGT chr3:98731071-98731091 10 1.34e-05 TCTTCTCGT CACAAGTG GCT chr2:224760196-224760216 8 1.34e-05 CCACCCC CACAAGTG GTCAC chr19:57954840-57954860 12 2.69e-05 AAGGGCTGTA CACATGTG C chrX:106709374-106709394 12 6.33e-05 CACCTTGCTG CACAAATG A chr12:123122563-12312258 3 6.33e-05 AA CAGATGTG ATGGACTGTC chr10:44755942-44755962 2 6.33e-05 C CAGATGTG CCTATTTGGC chr7:97829853-97829873 10 8.25e-05 cttagtatg cacaggtg tgg chr14:51256654-51256674 12 8.25e-05 TTCCTGCATA CACAGGTG T chr16:88878518-88878538 7 1.99e-04 ACCGGA CAAAAGTG CGAGTC chr15:86236271-86236291 9 1.99e-04 GCCACTGC CAGAACTG TTCC chr7:152038307-152038327 1 1.99e-04 . cagaactg cccagccaag chr12:47750255-47750275 12 2.60e-04 AGcttctggt cacagatg g chr2:98644237-98644257 5 3.32e-04 cggt cacacatg gctaaact chr10:82223174-82223194 6 3.32e-04 GTCAC CAGATGTT CAGTGCC chr2:169568773-169568793 1 3.32e-04 . CAGATGTT CAGCTTGGCT chr19:55767070-55767090 3 4.13e-04 gt cacacctg actgccctca chr19:1263444-1263464 2 4.13e-04 G CACCAGTG ATCCTCCGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASAWGTG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:111716965-11171698 1.3e-05 2_[+2]_10 chr3:98731071-98731091 1.3e-05 9_[+2]_3 chr2:224760196-224760216 1.3e-05 7_[+2]_5 chr19:57954840-57954860 2.7e-05 11_[+2]_1 chrX:106709374-106709394 6.3e-05 11_[+2]_1 chr12:123122563-12312258 6.3e-05 2_[+2]_10 chr10:44755942-44755962 6.3e-05 1_[+2]_11 chr7:97829853-97829873 8.3e-05 9_[+2]_3 chr14:51256654-51256674 8.3e-05 11_[+2]_1 chr16:88878518-88878538 0.0002 6_[+2]_6 chr15:86236271-86236291 0.0002 8_[+2]_4 chr7:152038307-152038327 0.0002 [+2]_12 chr12:47750255-47750275 0.00026 11_[+2]_1 chr2:98644237-98644257 0.00033 4_[+2]_8 chr10:82223174-82223194 0.00033 5_[+2]_7 chr2:169568773-169568793 0.00033 [+2]_12 chr19:55767070-55767090 0.00041 2_[+2]_10 chr19:1263444-1263464 0.00041 1_[+2]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASAWGTG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CASAWGTG width=8 seqs=18 chr10:111716965-11171698 ( 3) CACAAGTG 1 chr3:98731071-98731091 ( 10) CACAAGTG 1 chr2:224760196-224760216 ( 8) CACAAGTG 1 chr19:57954840-57954860 ( 12) CACATGTG 1 chrX:106709374-106709394 ( 12) CACAAATG 1 chr12:123122563-12312258 ( 3) CAGATGTG 1 chr10:44755942-44755962 ( 2) CAGATGTG 1 chr7:97829853-97829873 ( 10) CACAGGTG 1 chr14:51256654-51256674 ( 12) CACAGGTG 1 chr16:88878518-88878538 ( 7) CAAAAGTG 1 chr15:86236271-86236291 ( 9) CAGAACTG 1 chr7:152038307-152038327 ( 1) CAGAACTG 1 chr12:47750255-47750275 ( 12) CACAGATG 1 chr2:98644237-98644257 ( 5) CACACATG 1 chr10:82223174-82223194 ( 6) CAGATGTT 1 chr2:169568773-169568793 ( 1) CAGATGTT 1 chr19:55767070-55767090 ( 3) CACACCTG 1 chr19:1263444-1263464 ( 2) CACCAGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASAWGTG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 6.78531 E= 1.3e+001 -1081 177 -1081 -1081 228 -1081 -1081 -1081 -189 106 18 -1081 220 -240 -1081 -1081 111 -140 -82 42 -30 -81 118 -1081 -1081 -1081 -1081 227 -1081 -1081 160 -90 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASAWGTG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 1.3e+001 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.055556 0.611111 0.333333 0.000000 0.944444 0.055556 0.000000 0.000000 0.444444 0.111111 0.166667 0.277778 0.166667 0.166667 0.666667 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.888889 0.111111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASAWGTG MEME-2 regular expression -------------------------------------------------------------------------------- CA[CG]A[AT]GTG -------------------------------------------------------------------------------- Time 3.21 secs. ******************************************************************************** ******************************************************************************** MOTIF ATAAAWTA MEME-3 width = 8 sites = 2 llr = 24 E-value = 2.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATAAAWTA MEME-3 Description -------------------------------------------------------------------------------- Simplified A a:aaa5:a pos.-specific C :::::::: probability G :::::::: matrix T :a:::5a: bits 2.3 ***** ** 2.1 ***** ** 1.8 ***** ** 1.6 ***** ** Relative 1.4 ******** Entropy 1.1 ******** (17.2 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ATAAAATA consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATAAAWTA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:116934001-11693402 12 6.56e-06 CACTGAAACC ATAAATTA G chr8:101484939-101484959 1 6.56e-06 . ATAAAATA GAGGTCACAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATAAAWTA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:116934001-11693402 6.6e-06 11_[+3]_1 chr8:101484939-101484959 6.6e-06 [+3]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATAAAWTA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATAAAWTA width=8 seqs=2 chr11:116934001-11693402 ( 12) ATAAATTA 1 chr8:101484939-101484959 ( 1) ATAAAATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATAAAWTA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.6653 E= 2.2e+003 227 -765 -765 -765 -765 -765 -765 226 227 -765 -765 -765 227 -765 -765 -765 227 -765 -765 -765 128 -765 -765 127 -765 -765 -765 226 227 -765 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATAAAWTA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.2e+003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATAAAWTA MEME-3 regular expression -------------------------------------------------------------------------------- ATAAA[AT]TA -------------------------------------------------------------------------------- Time 6.52 secs. ******************************************************************************** ******************************************************************************** MOTIF ACACAGAA MEME-4 width = 8 sites = 2 llr = 23 E-value = 4.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACACAGAA MEME-4 Description -------------------------------------------------------------------------------- Simplified A a:a:a:aa pos.-specific C :a:a:::: probability G :::::a:: matrix T :::::::: bits 2.3 * * * ** 2.1 * * * ** 1.8 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.1 ******** (16.7 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ACACAGAA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACAGAA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr16:4896655-4896675 3 9.36e-06 GG ACACAGAA GCAGACCGCG chr7:111721284-111721304 13 9.36e-06 TGGAggagac acacagaa -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACAGAA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:4896655-4896675 9.4e-06 2_[+4]_10 chr7:111721284-111721304 9.4e-06 12_[+4] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACAGAA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACACAGAA width=8 seqs=2 chr16:4896655-4896675 ( 3) ACACAGAA 1 chr7:111721284-111721304 ( 13) ACACAGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACAGAA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.6653 E= 4.9e+003 227 -765 -765 -765 -765 177 -765 -765 227 -765 -765 -765 -765 177 -765 -765 227 -765 -765 -765 -765 -765 176 -765 227 -765 -765 -765 227 -765 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACAGAA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 4.9e+003 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACAGAA MEME-4 regular expression -------------------------------------------------------------------------------- ACACAGAA -------------------------------------------------------------------------------- Time 9.65 secs. ******************************************************************************** ******************************************************************************** MOTIF GCTYCTGG MEME-5 width = 8 sites = 6 llr = 58 E-value = 1.2e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCTYCTGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 2a:3a::: probability G 8:::::aa matrix T ::a7:a:: bits 2.3 * * 2.1 * * 1.8 ** **** 1.6 ** **** Relative 1.4 ** **** Entropy 1.1 ******** (13.9 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCTTCTGG consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTYCTGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:47750255-47750275 3 1.94e-05 AA Gcttctgg tcacagatgg chr19:344962-344982 3 1.94e-05 CG GCTTCTGG CGAGCTTGCG chr7:105409743-105409763 7 1.94e-05 GAAGTG GCTTCTGG AAGCGT chr6:4789606-4789626 2 4.67e-05 T GCTCCTGG GTTTCAGTTG chr10:72639943-72639963 4 4.67e-05 TGG GCTCCTGG TGAGAGATT chr2:151467391-151467411 8 6.60e-05 AGCACCA CCTTCTGG AGGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTYCTGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:47750255-47750275 1.9e-05 2_[+5]_10 chr19:344962-344982 1.9e-05 2_[+5]_10 chr7:105409743-105409763 1.9e-05 6_[+5]_6 chr6:4789606-4789626 4.7e-05 1_[+5]_11 chr10:72639943-72639963 4.7e-05 3_[+5]_9 chr2:151467391-151467411 6.6e-05 7_[+5]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTYCTGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCTYCTGG width=8 seqs=6 chr12:47750255-47750275 ( 3) GCTTCTGG 1 chr19:344962-344982 ( 3) GCTTCTGG 1 chr7:105409743-105409763 ( 7) GCTTCTGG 1 chr6:4789606-4789626 ( 2) GCTCCTGG 1 chr10:72639943-72639963 ( 4) GCTCCTGG 1 chr2:151467391-151467411 ( 8) CCTTCTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTYCTGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.73685 E= 1.2e+004 -923 -81 150 -923 -923 177 -923 -923 -923 -923 -923 227 -923 19 -923 168 -923 177 -923 -923 -923 -923 -923 227 -923 -923 177 -923 -923 -923 177 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTYCTGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 1.2e+004 0.000000 0.166667 0.833333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.333333 0.000000 0.666667 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTYCTGG MEME-5 regular expression -------------------------------------------------------------------------------- GCT[TC]CTGG -------------------------------------------------------------------------------- Time 12.66 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:148521027-148521047 4.76e-01 20 chr5:150590720-150590740 9.94e-01 20 chr2:10554268-10554288 3.66e-01 20 chr1:116272611-116272631 1.40e-01 20 chr7:111721284-111721304 1.74e-02 12_[+4(9.36e-06)] chr1:110890000-110890020 9.23e-01 20 chr15:60971033-60971053 7.56e-01 20 chr7:4729512-4729532 2.49e-01 20 chr7:105409743-105409763 7.37e-02 6_[+5(1.94e-05)]_6 chr3:186371018-186371038 8.18e-01 20 chr4:153516840-153516860 4.88e-01 20 chr7:98271537-98271557 9.89e-01 20 chr17:76362715-76362735 1.54e-01 20 chr2:27886271-27886291 8.55e-01 20 chr15:76196887-76196907 9.69e-01 20 chr12:12867239-12867259 2.63e-01 20 chrX:40029279-40029299 3.75e-01 20 chr14:25602177-25602197 9.92e-01 20 chr7:130583068-130583088 2.22e-02 11_[+1(5.73e-05)]_1 chr6:2750402-2750422 4.23e-01 20 chr19:1263444-1263464 5.84e-02 20 chr10:44755942-44755962 5.15e-02 1_[+2(6.33e-05)]_11 chr11:72533746-72533766 1.34e-01 20 chr8:70468665-70468685 2.47e-01 20 chr19:42708071-42708091 8.30e-01 20 chr16:74486365-74486385 1.83e-02 20 chr15:100296143-10029616 5.47e-01 20 chr2:152719399-152719419 5.60e-02 20 chr22:35876261-35876281 1.03e-01 20 chr20:17940424-17940444 7.63e-02 20 chr2:96899740-96899760 1.42e-01 20 chr8:104186115-104186135 7.20e-01 20 chr8:144461995-144462015 1.19e-01 20 chr10:131350521-13135054 6.66e-01 20 chr11:16635347-16635367 9.94e-01 20 chr21:44789138-44789158 1.31e-01 20 chr6:146284981-146285001 7.28e-01 20 chr2:224760196-224760216 8.58e-03 7_[+2(1.34e-05)]_5 chr15:84649591-84649611 5.85e-01 20 chr20:40302353-40302373 1.75e-03 20 chr2:206546671-206546691 4.36e-01 20 chr9:87624328-87624348 3.13e-01 20 chr19:17009283-17009303 4.94e-02 20 chr20:33543166-33543186 8.90e-01 20 chr16:49563736-49563756 6.31e-01 20 chr20:3780605-3780625 4.99e-01 20 chr11:74661627-74661647 2.95e-01 20 chr19:55767070-55767090 2.44e-02 20 chr16:87796083-87796103 6.95e-02 20 chr13:114812945-11481296 2.44e-01 20 chr9:132032602-132032622 1.58e-01 20 chr17:80818157-80818177 4.18e-01 20 chr8:129005635-129005655 1.54e-01 20 chr1:206899103-206899123 7.45e-01 20 chr3:196750316-196750336 2.43e-01 20 chr15:90775506-90775526 7.39e-01 20 chr14:73736911-73736931 7.84e-01 20 chr11:118741591-11874161 1.02e-01 20 chr19:344962-344982 1.75e-02 2_[+5(1.94e-05)]_10 chr1:109655427-109655447 1.29e-02 20 chr2:20778736-20778756 9.13e-01 20 chr5:10284254-10284274 5.21e-01 20 chrX:100603737-100603757 5.93e-01 20 chr4:26863138-26863158 5.53e-01 20 chr14:59741847-59741867 8.07e-01 20 chr17:63175713-63175733 7.96e-02 20 chr5:40571012-40571032 3.54e-01 20 chr22:36499214-36499234 6.94e-01 20 chr19:38469670-38469690 6.98e-01 20 chr10:72639943-72639963 1.53e-02 3_[+5(4.67e-05)]_9 chr5:79783822-79783842 8.43e-01 20 chr11:8555037-8555057 1.49e-01 20 chr3:16416360-16416380 5.61e-01 20 chr6:2659343-2659363 3.74e-01 20 chr5:6188634-6188654 3.08e-02 20 chr19:30164034-30164054 8.20e-01 20 chr6:4789606-4789626 7.77e-02 1_[+5(4.67e-05)]_11 chr2:55275069-55275089 5.60e-01 20 chr10:11491050-11491070 1.50e-01 20 chr10:80063341-80063361 5.22e-01 20 chr7:152038307-152038327 1.46e-03 10_[+1(5.73e-05)]_2 chr1:24863180-24863200 2.81e-02 20 chr16:28943201-28943221 8.58e-01 20 chr3:98731071-98731091 1.72e-03 9_[+2(1.34e-05)]_3 chr12:123122563-12312258 2.23e-02 2_[+2(6.33e-05)]_10 chr19:18209778-18209798 3.73e-02 9_[+1(5.73e-05)]_3 chr1:20539604-20539624 8.81e-01 20 chr1:167772706-167772726 8.30e-02 20 chr22:37908259-37908279 4.84e-02 20 chr21:43956164-43956184 4.23e-03 1_[+1(1.91e-05)]_11 chr14:51256654-51256674 3.95e-03 11_[+2(8.25e-05)]_1 chr10:5882420-5882440 5.13e-01 20 chr3:122824626-122824646 8.63e-01 20 chr6:41702109-41702129 4.83e-01 20 chr6:2232943-2232963 7.02e-02 20 chr3:130612928-130612948 5.14e-01 20 chr2:15282380-15282400 5.48e-02 20 chr2:238578316-238578336 2.99e-01 20 chrX:106709374-106709394 7.95e-04 11_[+2(6.33e-05)]_1 chr15:86127486-86127506 3.71e-01 20 chr15:86236271-86236291 2.36e-02 20 chr9:79008734-79008754 5.61e-01 20 chr17:43380163-43380183 1.86e-01 20 chr9:5439015-5439035 4.79e-01 20 chr20:44728312-44728332 7.36e-01 20 chr4:2834450-2834470 8.03e-01 20 chr1:151224302-151224322 3.86e-01 20 chr3:45637989-45638009 1.26e-01 20 chr1:186051618-186051638 5.79e-01 20 chr16:28204670-28204690 8.26e-01 20 chr19:57954840-57954860 1.14e-02 11_[+2(2.69e-05)]_1 chr7:28610053-28610073 3.77e-02 20 chr19:2086729-2086749 7.04e-01 20 chr13:41163985-41164005 1.22e-01 20 chr13:100028530-10002855 8.49e-04 4_[+1(1.91e-05)]_8 chr9:95900781-95900801 9.72e-01 20 chr1:31203332-31203352 9.83e-01 20 chr11:111288023-11128804 9.97e-01 20 chr9:129173951-129173971 2.40e-01 20 chr2:235409224-235409244 6.55e-01 20 chr2:12256497-12256517 9.29e-01 20 chr22:33695759-33695779 1.69e-01 20 chr12:111074503-11107452 7.16e-01 20 chr17:28256976-28256996 6.45e-01 20 chr1:211433620-211433640 8.94e-02 20 chr7:16685307-16685327 5.41e-01 20 chr10:111716965-11171698 2.60e-03 2_[+2(1.34e-05)]_10 chr16:4896655-4896675 2.57e-03 2_[+4(9.36e-06)]_10 chr12:131917258-13191727 9.63e-01 20 chr7:97829853-97829873 8.70e-03 9_[+2(8.25e-05)]_3 chr15:82158661-82158681 6.37e-01 20 chr19:16557127-16557147 4.44e-01 20 chr15:31618818-31618838 7.06e-01 20 chr6:107150470-107150490 4.85e-01 20 chr19:18280576-18280596 1.22e-01 20 chr15:44487550-44487570 8.13e-01 20 chr10:120790338-12079035 7.48e-01 20 chr22:35485302-35485322 4.43e-01 20 chr2:33431239-33431259 2.18e-01 20 chr15:89164922-89164942 7.72e-01 20 chr20:49454108-49454128 2.40e-01 20 chr16:55505577-55505597 3.25e-01 20 chr15:68055321-68055341 5.30e-02 20 chr11:8958842-8958862 1.08e-01 20 chr12:53718666-53718686 3.49e-01 20 chr7:121081116-121081136 6.91e-01 20 chr16:1764195-1764215 8.97e-01 20 chr2:169568773-169568793 1.49e-01 20 chr15:99619485-99619505 3.00e-01 20 chr18:10685700-10685720 9.43e-01 20 chr16:11402884-11402904 5.40e-01 20 chr12:49741289-49741309 7.04e-01 20 chr10:94517155-94517175 4.93e-03 20 chr11:118972545-11897256 2.78e-01 20 chr13:50145841-50145861 8.05e-01 20 chr19:45240763-45240783 1.54e-01 20 chr1:2343721-2343741 5.67e-01 20 chr16:84674958-84674978 3.04e-01 20 chr19:40864792-40864812 8.36e-01 20 chr18:21003257-21003277 2.23e-02 10_[+1(5.73e-05)]_2 chrX:149369313-149369333 8.36e-01 20 chr2:103126400-103126420 2.42e-01 20 chr16:67469223-67469243 2.97e-01 20 chr10:22888184-22888204 8.39e-01 20 chr13:111364699-11136471 1.62e-02 11_[+1(5.73e-05)]_1 chr8:128707325-128707345 4.64e-01 20 chr9:112185075-112185095 5.56e-01 20 chr4:154006487-154006507 3.43e-01 20 chr12:51318249-51318269 2.37e-02 20 chr3:59232672-59232692 3.22e-01 20 chr6:18122903-18122923 4.24e-02 20 chr1:161146754-161146774 4.33e-01 20 chr8:101484939-101484959 3.41e-03 [+3(6.56e-06)]_12 chr2:231122664-231122684 8.81e-01 20 chr22:41024885-41024905 1.76e-01 20 chr19:10213617-10213637 5.82e-01 20 chr21:45626836-45626856 1.32e-01 20 chr17:76705310-76705330 4.45e-01 20 chr2:187351423-187351443 2.53e-01 20 chr17:47271562-47271582 3.56e-01 20 chr22:38055318-38055338 3.22e-01 20 chr5:54198780-54198800 2.83e-01 20 chr7:102049070-102049090 9.50e-01 20 chr19:11877698-11877718 9.48e-01 20 chr14:96128381-96128401 1.77e-01 20 chr10:82223174-82223194 1.87e-01 20 chr17:65571214-65571234 2.74e-01 20 chr3:59248132-59248152 5.38e-01 20 chr14:68751807-68751827 8.34e-01 20 chr2:98644237-98644257 9.56e-03 20 chr11:116934001-11693402 6.81e-05 11_[+3(6.56e-06)]_1 chr2:8685232-8685252 3.76e-01 20 chr14:78915003-78915023 4.56e-01 20 chr7:65670214-65670234 1.76e-01 20 chr22:44460071-44460091 4.71e-01 20 chr6:15359185-15359205 5.26e-01 20 chr6:34856999-34857019 7.51e-01 20 chr21:45627345-45627365 5.07e-02 20 chr21:38929805-38929825 6.07e-01 20 chr19:18518961-18518981 3.93e-01 20 chr7:139912536-139912556 5.48e-01 20 chr6:16238733-16238753 9.59e-01 20 chr12:28343735-28343755 5.21e-01 20 chr1:168473874-168473894 1.34e-01 20 chr11:130724576-13072459 3.09e-01 20 chr7:6676876-6676896 5.39e-01 20 chr5:77590543-77590563 3.26e-01 20 chr3:183967533-183967553 7.61e-01 20 chr7:150148373-150148393 5.09e-01 20 chr17:76286023-76286043 5.42e-01 20 chr19:1269041-1269061 2.12e-01 20 chr4:8194638-8194658 5.06e-01 20 chr6:106551752-106551772 1.38e-02 20 chr20:61733777-61733797 9.92e-02 20 chr15:99525758-99525778 5.45e-01 20 chr6:33561004-33561024 2.72e-01 20 chr12:9800970-9800990 9.83e-01 20 chr3:169650047-169650067 3.96e-02 20 chr5:141489730-141489750 7.73e-02 20 chr5:132441649-132441669 6.77e-01 20 chr12:68513665-68513685 9.10e-01 20 chr12:47750255-47750275 4.73e-05 2_[+5(1.94e-05)]_10 chr4:8200663-8200683 1.65e-01 20 chr10:114602813-11460283 2.03e-01 20 chr22:36851314-36851334 9.98e-01 20 chr8:97198968-97198988 4.68e-01 20 chr10:121452978-12145299 6.10e-02 20 chr6:32657524-32657544 1.23e-01 20 chr11:102604136-10260415 7.24e-01 20 chr11:134098673-13409869 8.92e-01 20 chr15:41099750-41099770 7.40e-01 20 chr1:12128710-12128730 1.57e-02 20 chr20:25039020-25039040 2.72e-01 20 chr3:194412895-194412915 1.41e-01 20 chr2:151467391-151467411 5.69e-02 7_[+5(6.60e-05)]_5 chr12:4300999-4301019 3.68e-01 20 chr8:142046299-142046319 2.46e-01 20 chr7:137602206-137602226 4.33e-01 20 chr22:26169094-26169114 1.27e-01 20 chr12:3861539-3861559 1.26e-01 20 chr11:61495994-61496014 3.67e-01 20 chr21:42803906-42803926 9.00e-01 20 chr16:88878518-88878538 2.21e-02 20 chr12:54144866-54144886 1.75e-01 20 chr20:20447297-20447317 7.09e-01 20 chr21:45775390-45775410 6.88e-01 20 chr7:112758715-112758735 7.56e-01 20 chr22:47131095-47131115 6.79e-01 20 chr11:1876377-1876397 3.83e-01 20 chr8:29087155-29087175 4.12e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n10.farnam.hpc.yale.internal ********************************************************************************