******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/NRF1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr7:6487613-6487633 1.0000 20 chr2:61372152-61372172 1.0000 20 chr10:27389461-27389481 1.0000 20 chr20:35580164-35580184 1.0000 20 chr17:8103576-8103596 1.0000 20 chr17:27169848-27169868 1.0000 20 chr19:46406089-46406109 1.0000 20 chr2:113012704-113012724 1.0000 20 chr9:139685764-139685784 1.0000 20 chr5:130501006-130501026 1.0000 20 chr22:28315399-28315419 1.0000 20 chr12:69753468-69753488 1.0000 20 chr6:24403132-24403152 1.0000 20 chr1:46152299-46152319 1.0000 20 chr1:170043863-170043883 1.0000 20 chr19:35615537-35615557 1.0000 20 chr17:47754933-47754953 1.0000 20 chr20:25176256-25176276 1.0000 20 chr22:24200013-24200033 1.0000 20 chr9:124922066-124922086 1.0000 20 chr21:34697246-34697266 1.0000 20 chr17:27278690-27278710 1.0000 20 chr16:27215181-27215201 1.0000 20 chr6:109169606-109169626 1.0000 20 chr7:149571026-149571046 1.0000 20 chr19:19303525-19303545 1.0000 20 chr5:112043153-112043173 1.0000 20 chr20:57618039-57618059 1.0000 20 chr1:231473664-231473684 1.0000 20 chr10:124639132-12463915 1.0000 20 chr1:21113318-21113338 1.0000 20 chr19:56116800-56116820 1.0000 20 chr21:35747700-35747720 1.0000 20 chr19:11071417-11071437 1.0000 20 chr1:167189812-167189832 1.0000 20 chr16:8715493-8715513 1.0000 20 chr20:3185072-3185092 1.0000 20 chr5:133562009-133562029 1.0000 20 chr5:34008272-34008292 1.0000 20 chr11:63448852-63448872 1.0000 20 chr5:132073341-132073361 1.0000 20 chr17:3572032-3572052 1.0000 20 chr13:21348109-21348129 1.0000 20 chr2:101925174-101925194 1.0000 20 chr19:6199673-6199693 1.0000 20 chr5:179105579-179105599 1.0000 20 chr7:44621865-44621885 1.0000 20 chr16:31471236-31471256 1.0000 20 chr18:66382407-66382427 1.0000 20 chr1:16162512-16162532 1.0000 20 chr19:18794388-18794408 1.0000 20 chrX:40506847-40506867 1.0000 20 chr2:3522839-3522859 1.0000 20 chr12:12939959-12939979 1.0000 20 chr11:65101283-65101303 1.0000 20 chr8:117887121-117887141 1.0000 20 chr9:79792406-79792426 1.0000 20 chr13:49106820-49106840 1.0000 20 chr2:33824387-33824407 1.0000 20 chr14:89029288-89029308 1.0000 20 chr4:54243751-54243771 1.0000 20 chr2:71558856-71558876 1.0000 20 chrX:7066248-7066268 1.0000 20 chr11:1330937-1330957 1.0000 20 chr13:40229773-40229793 1.0000 20 chr5:138678083-138678103 1.0000 20 chr2:264880-264900 1.0000 20 chr7:5229815-5229835 1.0000 20 chr16:89574762-89574782 1.0000 20 chr1:16174026-16174046 1.0000 20 chr17:8339029-8339049 1.0000 20 chr16:29984944-29984964 1.0000 20 chr8:94753287-94753307 1.0000 20 chr1:35734245-35734265 1.0000 20 chr6:44095168-44095188 1.0000 20 chr3:111697808-111697828 1.0000 20 chr19:3987911-3987931 1.0000 20 chr5:52095866-52095886 1.0000 20 chr19:34895264-34895284 1.0000 20 chr6:52535860-52535880 1.0000 20 chr4:54958084-54958104 1.0000 20 chr15:75199236-75199256 1.0000 20 chr11:59436574-59436594 1.0000 20 chr14:39583488-39583508 1.0000 20 chr12:120554684-12055470 1.0000 20 chr8:55014672-55014692 1.0000 20 chr4:6717741-6717761 1.0000 20 chr19:40030809-40030829 1.0000 20 chr3:52232100-52232120 1.0000 20 chr7:142985399-142985419 1.0000 20 chrX:152864789-152864809 1.0000 20 chr16:56553971-56553991 1.0000 20 chr16:4234024-4234044 1.0000 20 chr13:108867915-10886793 1.0000 20 chr1:161129221-161129241 1.0000 20 chr5:218318-218338 1.0000 20 chr2:170655305-170655325 1.0000 20 chr12:102224818-10222483 1.0000 20 chr11:65420479-65420499 1.0000 20 chr6:30614775-30614795 1.0000 20 chr19:16582821-16582841 1.0000 20 chr2:216979593-216979613 1.0000 20 chr19:17622365-17622385 1.0000 20 chr12:57623439-57623459 1.0000 20 chr11:65029284-65029304 1.0000 20 chr1:84971910-84971930 1.0000 20 chr1:202858309-202858329 1.0000 20 chr2:19547800-19547820 1.0000 20 chr19:46850200-46850220 1.0000 20 chr5:52405635-52405655 1.0000 20 chr19:5978258-5978278 1.0000 20 chr1:226070086-226070106 1.0000 20 chr2:28974545-28974565 1.0000 20 chr4:6675649-6675669 1.0000 20 chr16:71598874-71598894 1.0000 20 chr21:48055505-48055525 1.0000 20 chr8:145137456-145137476 1.0000 20 chr2:27357516-27357536 1.0000 20 chr12:132568802-13256882 1.0000 20 chr8:142011493-142011513 1.0000 20 chr13:48575440-48575460 1.0000 20 chr19:39340088-39340108 1.0000 20 chr14:102771530-10277155 1.0000 20 chr8:80695840-80695860 1.0000 20 chr11:64085553-64085573 1.0000 20 chr13:50656327-50656347 1.0000 20 chr6:121655638-121655658 1.0000 20 chr17:17739588-17739608 1.0000 20 chr20:37101363-37101383 1.0000 20 chr4:123073449-123073469 1.0000 20 chr15:41952573-41952593 1.0000 20 chr5:137225091-137225111 1.0000 20 chr6:13328813-13328833 1.0000 20 chr6:153304772-153304792 1.0000 20 chr1:1709915-1709935 1.0000 20 chr1:109756518-109756538 1.0000 20 chr6:30881977-30881997 1.0000 20 chr6:10404461-10404481 1.0000 20 chr9:103361200-103361220 1.0000 20 chr17:57297785-57297805 1.0000 20 chr11:76092339-76092359 1.0000 20 chr3:47555240-47555260 1.0000 20 chr16:2933225-2933245 1.0000 20 chr16:67694241-67694261 1.0000 20 chr20:35402238-35402258 1.0000 20 chr3:14166465-14166485 1.0000 20 chr17:18087073-18087093 1.0000 20 chr21:33651479-33651499 1.0000 20 chr3:106959512-106959532 1.0000 20 chr19:2785385-2785405 1.0000 20 chr19:42721988-42722008 1.0000 20 chr12:111021243-11102126 1.0000 20 chrX:48456512-48456532 1.0000 20 chr1:32671214-32671234 1.0000 20 chr8:26435403-26435423 1.0000 20 chr19:3762992-3763012 1.0000 20 chr11:134094465-13409448 1.0000 20 chr10:50747156-50747176 1.0000 20 chr9:131843660-131843680 1.0000 20 chr4:26862265-26862285 1.0000 20 chr11:60681577-60681597 1.0000 20 chr10:86088286-86088306 1.0000 20 chr16:3661611-3661631 1.0000 20 chr16:66586432-66586452 1.0000 20 chr10:120967017-12096703 1.0000 20 chr16:67753290-67753310 1.0000 20 chr9:139010816-139010836 1.0000 20 chr3:12525876-12525896 1.0000 20 chr16:4401343-4401363 1.0000 20 chr9:115142220-115142240 1.0000 20 chr10:73976074-73976094 1.0000 20 chr4:2243901-2243921 1.0000 20 chr6:88118331-88118351 1.0000 20 chr9:116139251-116139271 1.0000 20 chr17:29421866-29421886 1.0000 20 chr17:6927067-6927087 1.0000 20 chr13:50510695-50510715 1.0000 20 chr10:133795539-13379555 1.0000 20 chr7:116502490-116502510 1.0000 20 chr4:44728626-44728646 1.0000 20 chr16:188729-188749 1.0000 20 chr11:118901617-11890163 1.0000 20 chr15:101142419-10114243 1.0000 20 chr2:103353358-103353378 1.0000 20 chr17:66244174-66244194 1.0000 20 chr8:23103952-23103972 1.0000 20 chr6:39082964-39082984 1.0000 20 chr18:48556564-48556584 1.0000 20 chr19:48867310-48867330 1.0000 20 chr5:141704664-141704684 1.0000 20 chr19:39138232-39138252 1.0000 20 chr12:27090943-27090963 1.0000 20 chr11:64072815-64072835 1.0000 20 chr7:56131926-56131946 1.0000 20 chr17:9479918-9479938 1.0000 20 chr5:10441935-10441955 1.0000 20 chr7:6388667-6388687 1.0000 20 chrX:48901348-48901368 1.0000 20 chr19:40023528-40023548 1.0000 20 chr19:16940155-16940175 1.0000 20 chr7:128502818-128502838 1.0000 20 chr19:34850279-34850299 1.0000 20 chr3:49591869-49591889 1.0000 20 chr22:21356088-21356108 1.0000 20 chr17:36714571-36714591 1.0000 20 chr10:38146598-38146618 1.0000 20 chr15:29562058-29562078 1.0000 20 chr15:65321963-65321983 1.0000 20 chr18:10525867-10525887 1.0000 20 chr2:37311548-37311568 1.0000 20 chr17:37213278-37213298 1.0000 20 chr3:157816014-157816034 1.0000 20 chr6:57087096-57087116 1.0000 20 chr5:1594661-1594681 1.0000 20 chr10:70231720-70231740 1.0000 20 chr10:22629301-22629321 1.0000 20 chr19:40324915-40324935 1.0000 20 chr1:40349183-40349203 1.0000 20 chr1:85742444-85742464 1.0000 20 chr4:1242507-1242527 1.0000 20 chr8:9912215-9912235 1.0000 20 chr11:66512171-66512191 1.0000 20 chr1:109756981-109757001 1.0000 20 chr11:47664276-47664296 1.0000 20 chr20:62526400-62526420 1.0000 20 chr17:57970323-57970343 1.0000 20 chr19:44259100-44259120 1.0000 20 chr13:52158425-52158445 1.0000 20 chr19:19144403-19144423 1.0000 20 chr2:70056727-70056747 1.0000 20 chr15:42787808-42787828 1.0000 20 chr3:47017977-47017997 1.0000 20 chr7:156433278-156433298 1.0000 20 chr19:42829546-42829566 1.0000 20 chr2:118771751-118771771 1.0000 20 chr8:97247842-97247862 1.0000 20 chr7:12250816-12250836 1.0000 20 chr14:96968658-96968678 1.0000 20 chr3:156807002-156807022 1.0000 20 chr6:117923700-117923720 1.0000 20 chr19:797902-797922 1.0000 20 chr17:73105984-73106004 1.0000 20 chr19:44079745-44079765 1.0000 20 chr1:200379202-200379222 1.0000 20 chr21:30257695-30257715 1.0000 20 chrX:348003-348023 1.0000 20 chr1:24306954-24306974 1.0000 20 chr16:27561242-27561262 1.0000 20 chr1:91966393-91966413 1.0000 20 chr9:6008639-6008659 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_NRF1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/NRF1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.144 C 0.346 G 0.376 T 0.134 Background letter frequencies (from file dataset with add-one prior applied): A 0.144 C 0.346 G 0.375 T 0.134 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CMTGCGCA MEME-1 width = 8 sites = 81 llr = 522 E-value = 9.8e-049 ******************************************************************************** -------------------------------------------------------------------------------- Motif CMTGCGCA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 15:::::7 pos.-specific C 832:a:a1 probability G 121a:a:1 matrix T :17::::: bits 2.9 2.6 2.3 2.0 Relative 1.7 Entropy 1.4 **** (9.3 bits) 1.2 ****** 0.9 ****** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel CATGCGCA consensus CC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMTGCGCA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr21:30257695-30257715 13 1.62e-05 AGGGCGTGCG CATGCGCA chr20:62526400-62526420 1 1.62e-05 . CATGCGCA GCCGGTCCCA chr4:1242507-1242527 3 1.62e-05 CG CATGCGCA AGACCCTTCC chr12:111021243-11102126 7 1.62e-05 GTTGAA CATGCGCA GAGGGT chr8:80695840-80695860 9 1.62e-05 GCCAGGCG CATGCGCA CGGG chr1:226070086-226070106 10 1.62e-05 CCTCCTGCA CATGCGCA GAG chr2:3522839-3522859 1 1.62e-05 . CATGCGCA GCACACCACA chr5:133562009-133562029 9 1.62e-05 AGCTGGAG CATGCGCA GTGC chr2:61372152-61372172 9 1.62e-05 CCTTGGAG CATGCGCA CACA chr7:128502818-128502838 1 2.29e-05 . AATGCGCA TGTCCCGGAA chr1:24306954-24306974 1 6.18e-05 . CCTGCGCA TGCGGAGGGC chr15:65321963-65321983 12 6.18e-05 GGCGGCCGGC CCTGCGCA G chr2:103353358-103353378 2 6.18e-05 G CCTGCGCA GAGAGAGGGG chr13:50510695-50510715 5 6.18e-05 TGCG CCTGCGCA CCAGCTGG chr11:64085553-64085573 11 6.18e-05 GCCGCTCGCG CCTGCGCA GT chr19:46850200-46850220 9 6.18e-05 GAAAGGGA CCTGCGCA GGCG chr8:55014672-55014692 4 6.18e-05 CAG CCTGCGCA TGCTCAGTG chr17:8339029-8339049 11 6.18e-05 CAAGAGGACG CCTGCGCA AG chr19:18794388-18794408 10 6.18e-05 gccggcgcg cctgcgca cTG chr21:35747700-35747720 12 6.18e-05 GCCCACTGCG CCTGCGCA C chr10:120967017-12096703 3 7.69e-05 CG CTTGCGCA GTGCGGCCGC chr12:120554684-12055470 4 7.69e-05 CGC CTTGCGCA GCCGCAGCC chr8:94753287-94753307 7 7.69e-05 ACCAAG CTTGCGCA CGCGCG chr12:69753468-69753488 5 1.19e-04 ACTG CGTGCGCA TACGCGAG chr10:27389461-27389481 1 1.19e-04 . CGTGCGCA CGAAGGCCCA chr13:52158425-52158445 9 1.61e-04 GACTGACG CACGCGCA TTGG chr10:38146598-38146618 1 1.61e-04 . CACGCGCA CAACAAACGT chr17:36714571-36714591 2 1.61e-04 A CACGCGCA TGCTCAGCTC chr4:26862265-26862285 1 1.61e-04 . CACGCGCA GTACAGCAGC chr17:18087073-18087093 10 1.61e-04 GCCTGCACG CACGCGCA TGC chr6:121655638-121655658 6 1.61e-04 ACGCG CACGCGCA CCCCCAC chr5:138678083-138678103 4 1.61e-04 CGC CACGCGCA GCCCCTACT chr2:101925174-101925194 2 1.61e-04 G CACGCGCA CCTGGCGGAG chr11:65029284-65029304 6 1.85e-04 CCGCT GATGCGCA CGCGCCC chr10:70231720-70231740 8 2.24e-04 TCGCGCG CATGCGCC AACCC chr6:57087096-57087116 7 2.24e-04 GCGGAG CATGCGCC GTGCTT chr10:50747156-50747176 13 2.24e-04 GCCCGTGGCG CATGCGCC chr19:3987911-3987931 1 2.24e-04 . CATGCGCC TGCTGCGGCG chr16:188729-188749 5 3.27e-04 ggcg caggcgca ggcAGCGG chr16:66586432-66586452 3 3.27e-04 CG CATGCGCG AGAGCGAACG chr13:48575440-48575460 1 3.27e-04 . CAGGCGCA CAGGCGACAG chr8:142011493-142011513 8 3.27e-04 GACTGGG CATGCGCG CCGCC chrX:152864789-152864809 9 3.27e-04 CGCAGGCG CAGGCGCA GGCG chr15:75199236-75199256 3 3.27e-04 CG CAGGCGCA GGTAGTCCCC chr6:52535860-52535880 3 3.27e-04 CG CATGCGCG CGGCAGGGAG chr17:8103576-8103596 13 3.27e-04 ttcggtgaac actgcgca chr17:9479918-9479938 13 3.48e-04 AGCTGGAGCG CATGCGCT chr10:124639132-12463915 12 3.66e-04 AGGGCCTGCC AGTGCGCA T chr6:109169606-109169626 6 4.84e-04 CGGGA CCCGCGCA GGCCCAG chrX:7066248-7066268 9 4.99e-04 GGGGTCGC TCTGCGCA CGCG chr3:47017977-47017997 13 5.38e-04 GCGCCGTCTT CTCGCGCA chr17:27278690-27278710 6 5.38e-04 GAGGT CTCGCGCA GGCGCTT chr3:47555240-47555260 12 6.02e-04 CGATGGGACC GCTGCGCA C chr6:30881977-30881997 12 6.02e-04 AAAGCCAGCT GCTGCGCA T chr18:48556564-48556584 12 8.41e-04 GTGGTCCCCG CGCGCGCA T chr20:35402238-35402258 8 8.41e-04 GGGCACG CGCGCGCA GAACG chr9:79792406-79792426 8 8.41e-04 CTCCAGC CGCGCGCA GACTT chrX:40506847-40506867 13 8.41e-04 GGCAGCGGCG CCTGCGCC chr19:39138232-39138252 8 1.08e-03 TCGGCGC TGTGCgca ggcgc chr21:48055505-48055525 8 1.08e-03 GACTGCG CCTgcgcg gggcg chr2:19547800-19547820 6 1.08e-03 TTGCG CCTGCGCG TGGCGCT chr19:44259100-44259120 12 1.14e-03 TCGAGAACTG AATGCGCT C chr11:63448852-63448872 12 1.14e-03 AGGAGCGGTT CTTGCGCC T chr16:67753290-67753310 3 1.26e-03 GG CCTGCGCT GGGAGGGGCC chr9:116139251-116139271 13 1.31e-03 CTCGGGCGGA GGTGCGCA chr1:84971910-84971930 13 1.31e-03 CTCCACCCTC GGTGCGCA chr11:66512171-66512191 10 1.79e-03 tgggcgggg cgtgcgcg ggc chr3:106959512-106959532 5 1.79e-03 TGCG CACGCGCC GGTCGGCT chr15:41952573-41952593 11 1.79e-03 GGTAGGAGCG CGTGCGCG GT chr6:30614775-30614795 9 1.79e-03 CGAGCCCG CGGGCGCA GGCG chr14:89029288-89029308 9 1.79e-03 CGCGGACA CGGGCGCA TGCG chr17:73105984-73106004 6 1.96e-03 CCGCG CACGCGCG CCAAGGA chr19:40030809-40030829 7 2.03e-03 GGGCGC TATGCGCG CTGTAA chr19:35615537-35615557 7 2.23e-03 GCGCAA GAGGCGCA AAAGGC chr4:6717741-6717761 13 2.42e-03 cgtgagcgtg agcgcgca chr16:89574762-89574782 12 2.42e-03 CCCCGCCGCG CAGGCGCC G chr7:5229815-5229835 2 2.42e-03 G ACTGCGCC GCTCGAGGCC chr5:218318-218338 3 2.65e-03 CG CAGGCGCG ATGTCCCCCA chr17:3572032-3572052 12 2.65e-03 CGGGGCGCCC ACGGCGCA G chr1:231473664-231473684 10 2.66e-03 AGCGCAGAC ATTGCGCC TGC chr16:67694241-67694261 11 3.39e-03 CCACGTACAC CCCGCGCC TG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMTGCGCA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr21:30257695-30257715 1.6e-05 12_[+1] chr20:62526400-62526420 1.6e-05 [+1]_12 chr4:1242507-1242527 1.6e-05 2_[+1]_10 chr12:111021243-11102126 1.6e-05 6_[+1]_6 chr8:80695840-80695860 1.6e-05 8_[+1]_4 chr1:226070086-226070106 1.6e-05 9_[+1]_3 chr2:3522839-3522859 1.6e-05 [+1]_12 chr5:133562009-133562029 1.6e-05 8_[+1]_4 chr2:61372152-61372172 1.6e-05 8_[+1]_4 chr7:128502818-128502838 2.3e-05 [+1]_12 chr1:24306954-24306974 6.2e-05 [+1]_12 chr15:65321963-65321983 6.2e-05 11_[+1]_1 chr2:103353358-103353378 6.2e-05 1_[+1]_11 chr13:50510695-50510715 6.2e-05 4_[+1]_8 chr11:64085553-64085573 6.2e-05 10_[+1]_2 chr19:46850200-46850220 6.2e-05 8_[+1]_4 chr8:55014672-55014692 6.2e-05 3_[+1]_9 chr17:8339029-8339049 6.2e-05 10_[+1]_2 chr19:18794388-18794408 6.2e-05 9_[+1]_3 chr21:35747700-35747720 6.2e-05 11_[+1]_1 chr10:120967017-12096703 7.7e-05 2_[+1]_10 chr12:120554684-12055470 7.7e-05 3_[+1]_9 chr8:94753287-94753307 7.7e-05 6_[+1]_6 chr12:69753468-69753488 0.00012 4_[+1]_8 chr10:27389461-27389481 0.00012 [+1]_12 chr13:52158425-52158445 0.00016 8_[+1]_4 chr10:38146598-38146618 0.00016 [+1]_12 chr17:36714571-36714591 0.00016 1_[+1]_11 chr4:26862265-26862285 0.00016 [+1]_12 chr17:18087073-18087093 0.00016 9_[+1]_3 chr6:121655638-121655658 0.00016 5_[+1]_7 chr5:138678083-138678103 0.00016 3_[+1]_9 chr2:101925174-101925194 0.00016 1_[+1]_11 chr11:65029284-65029304 0.00018 5_[+1]_7 chr10:70231720-70231740 0.00022 7_[+1]_5 chr6:57087096-57087116 0.00022 6_[+1]_6 chr10:50747156-50747176 0.00022 12_[+1] chr19:3987911-3987931 0.00022 [+1]_12 chr16:188729-188749 0.00033 4_[+1]_8 chr16:66586432-66586452 0.00033 2_[+1]_10 chr13:48575440-48575460 0.00033 [+1]_12 chr8:142011493-142011513 0.00033 7_[+1]_5 chrX:152864789-152864809 0.00033 8_[+1]_4 chr15:75199236-75199256 0.00033 2_[+1]_10 chr6:52535860-52535880 0.00033 2_[+1]_10 chr17:8103576-8103596 0.00033 12_[+1] chr17:9479918-9479938 0.00035 12_[+1] chr10:124639132-12463915 0.00037 11_[+1]_1 chr6:109169606-109169626 0.00048 5_[+1]_7 chrX:7066248-7066268 0.0005 8_[+1]_4 chr3:47017977-47017997 0.00054 12_[+1] chr17:27278690-27278710 0.00054 5_[+1]_7 chr3:47555240-47555260 0.0006 11_[+1]_1 chr6:30881977-30881997 0.0006 11_[+1]_1 chr18:48556564-48556584 0.00084 11_[+1]_1 chr20:35402238-35402258 0.00084 7_[+1]_5 chr9:79792406-79792426 0.00084 7_[+1]_5 chrX:40506847-40506867 0.00084 12_[+1] chr19:39138232-39138252 0.0011 7_[+1]_5 chr21:48055505-48055525 0.0011 7_[+1]_5 chr2:19547800-19547820 0.0011 5_[+1]_7 chr19:44259100-44259120 0.0011 11_[+1]_1 chr11:63448852-63448872 0.0011 11_[+1]_1 chr16:67753290-67753310 0.0013 2_[+1]_10 chr9:116139251-116139271 0.0013 12_[+1] chr1:84971910-84971930 0.0013 12_[+1] chr11:66512171-66512191 0.0018 9_[+1]_3 chr3:106959512-106959532 0.0018 4_[+1]_8 chr15:41952573-41952593 0.0018 10_[+1]_2 chr6:30614775-30614795 0.0018 8_[+1]_4 chr14:89029288-89029308 0.0018 8_[+1]_4 chr17:73105984-73106004 0.002 5_[+1]_7 chr19:40030809-40030829 0.002 6_[+1]_6 chr19:35615537-35615557 0.0022 6_[+1]_6 chr4:6717741-6717761 0.0024 12_[+1] chr16:89574762-89574782 0.0024 11_[+1]_1 chr7:5229815-5229835 0.0024 1_[+1]_11 chr5:218318-218338 0.0026 2_[+1]_10 chr17:3572032-3572052 0.0026 11_[+1]_1 chr1:231473664-231473684 0.0027 9_[+1]_3 chr16:67694241-67694261 0.0034 10_[+1]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMTGCGCA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CMTGCGCA width=8 seqs=81 chr21:30257695-30257715 ( 13) CATGCGCA 1 chr20:62526400-62526420 ( 1) CATGCGCA 1 chr4:1242507-1242527 ( 3) CATGCGCA 1 chr12:111021243-11102126 ( 7) CATGCGCA 1 chr8:80695840-80695860 ( 9) CATGCGCA 1 chr1:226070086-226070106 ( 10) CATGCGCA 1 chr2:3522839-3522859 ( 1) CATGCGCA 1 chr5:133562009-133562029 ( 9) CATGCGCA 1 chr2:61372152-61372172 ( 9) CATGCGCA 1 chr7:128502818-128502838 ( 1) AATGCGCA 1 chr1:24306954-24306974 ( 1) CCTGCGCA 1 chr15:65321963-65321983 ( 12) CCTGCGCA 1 chr2:103353358-103353378 ( 2) CCTGCGCA 1 chr13:50510695-50510715 ( 5) CCTGCGCA 1 chr11:64085553-64085573 ( 11) CCTGCGCA 1 chr19:46850200-46850220 ( 9) CCTGCGCA 1 chr8:55014672-55014692 ( 4) CCTGCGCA 1 chr17:8339029-8339049 ( 11) CCTGCGCA 1 chr19:18794388-18794408 ( 10) CCTGCGCA 1 chr21:35747700-35747720 ( 12) CCTGCGCA 1 chr10:120967017-12096703 ( 3) CTTGCGCA 1 chr12:120554684-12055470 ( 4) CTTGCGCA 1 chr8:94753287-94753307 ( 7) CTTGCGCA 1 chr12:69753468-69753488 ( 5) CGTGCGCA 1 chr10:27389461-27389481 ( 1) CGTGCGCA 1 chr13:52158425-52158445 ( 9) CACGCGCA 1 chr10:38146598-38146618 ( 1) CACGCGCA 1 chr17:36714571-36714591 ( 2) CACGCGCA 1 chr4:26862265-26862285 ( 1) CACGCGCA 1 chr17:18087073-18087093 ( 10) CACGCGCA 1 chr6:121655638-121655658 ( 6) CACGCGCA 1 chr5:138678083-138678103 ( 4) CACGCGCA 1 chr2:101925174-101925194 ( 2) CACGCGCA 1 chr11:65029284-65029304 ( 6) GATGCGCA 1 chr10:70231720-70231740 ( 8) CATGCGCC 1 chr6:57087096-57087116 ( 7) CATGCGCC 1 chr10:50747156-50747176 ( 13) CATGCGCC 1 chr19:3987911-3987931 ( 1) CATGCGCC 1 chr16:188729-188749 ( 5) CAGGCGCA 1 chr16:66586432-66586452 ( 3) CATGCGCG 1 chr13:48575440-48575460 ( 1) CAGGCGCA 1 chr8:142011493-142011513 ( 8) CATGCGCG 1 chrX:152864789-152864809 ( 9) CAGGCGCA 1 chr15:75199236-75199256 ( 3) CAGGCGCA 1 chr6:52535860-52535880 ( 3) CATGCGCG 1 chr17:8103576-8103596 ( 13) ACTGCGCA 1 chr17:9479918-9479938 ( 13) CATGCGCT 1 chr10:124639132-12463915 ( 12) AGTGCGCA 1 chr6:109169606-109169626 ( 6) CCCGCGCA 1 chrX:7066248-7066268 ( 9) TCTGCGCA 1 chr3:47017977-47017997 ( 13) CTCGCGCA 1 chr17:27278690-27278710 ( 6) CTCGCGCA 1 chr3:47555240-47555260 ( 12) GCTGCGCA 1 chr6:30881977-30881997 ( 12) GCTGCGCA 1 chr18:48556564-48556584 ( 12) CGCGCGCA 1 chr20:35402238-35402258 ( 8) CGCGCGCA 1 chr9:79792406-79792426 ( 8) CGCGCGCA 1 chrX:40506847-40506867 ( 13) CCTGCGCC 1 chr19:39138232-39138252 ( 8) TGTGCGCA 1 chr21:48055505-48055525 ( 8) CCTGCGCG 1 chr2:19547800-19547820 ( 6) CCTGCGCG 1 chr19:44259100-44259120 ( 12) AATGCGCT 1 chr11:63448852-63448872 ( 12) CTTGCGCC 1 chr16:67753290-67753310 ( 3) CCTGCGCT 1 chr9:116139251-116139271 ( 13) GGTGCGCA 1 chr1:84971910-84971930 ( 13) GGTGCGCA 1 chr11:66512171-66512191 ( 10) CGTGCGCG 1 chr3:106959512-106959532 ( 5) CACGCGCC 1 chr15:41952573-41952593 ( 11) CGTGCGCG 1 chr6:30614775-30614795 ( 9) CGGGCGCA 1 chr14:89029288-89029308 ( 9) CGGGCGCA 1 chr17:73105984-73106004 ( 6) CACGCGCG 1 chr19:40030809-40030829 ( 7) TATGCGCG 1 chr19:35615537-35615557 ( 7) GAGGCGCA 1 chr4:6717741-6717761 ( 13) AGCGCGCA 1 chr16:89574762-89574782 ( 12) CAGGCGCC 1 chr7:5229815-5229835 ( 2) ACTGCGCC 1 chr5:218318-218338 ( 3) CAGGCGCG 1 chr17:3572032-3572052 ( 12) ACGGCGCA 1 chr1:231473664-231473684 ( 10) ATTGCGCC 1 chr16:67694241-67694261 ( 11) CCCGCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMTGCGCA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 6.79531 E= 9.8e-049 -54 119 -234 -186 170 -35 -112 -64 -1298 -64 -160 228 -1298 -1298 141 -1298 -1298 153 -1298 -1298 -1298 -1298 141 -1298 -1298 153 -1298 -1298 229 -135 -160 -186 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMTGCGCA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 81 E= 9.8e-049 0.098765 0.790123 0.074074 0.037037 0.469136 0.271605 0.172840 0.086420 0.000000 0.222222 0.123457 0.654321 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.703704 0.135802 0.123457 0.037037 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMTGCGCA MEME-1 regular expression -------------------------------------------------------------------------------- C[AC][TC]GCGCA -------------------------------------------------------------------------------- Time 2.55 secs. ******************************************************************************** ******************************************************************************** MOTIF KCTTTTTG MEME-2 width = 8 sites = 2 llr = 26 E-value = 5.0e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif KCTTTTTG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :a:::::: probability G 5::::::a matrix T 5:aaaaa: bits 2.9 ***** 2.6 ***** 2.3 ***** 2.0 ***** Relative 1.7 ***** Entropy 1.4 ******* (18.6 bits) 1.2 ******** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GCTTTTTG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCTTTTTG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:6388667-6388687 2 7.51e-07 T TCTTTTTG GCAGGTAAGA chr11:65420479-65420499 6 2.85e-06 CCAGC GCTTTTTG CTGCTGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCTTTTTG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:6388667-6388687 7.5e-07 1_[+2]_11 chr11:65420479-65420499 2.9e-06 5_[+2]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCTTTTTG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KCTTTTTG width=8 seqs=2 chr7:6388667-6388687 ( 2) TCTTTTTG 1 chr11:65420479-65420499 ( 6) GCTTTTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCTTTTTG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.6653 E= 5.0e+002 -765 -765 41 189 -765 153 -765 -765 -765 -765 -765 289 -765 -765 -765 289 -765 -765 -765 289 -765 -765 -765 289 -765 -765 -765 289 -765 -765 141 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCTTTTTG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 5.0e+002 0.000000 0.000000 0.500000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCTTTTTG MEME-2 regular expression -------------------------------------------------------------------------------- [GT]CTTTTTG -------------------------------------------------------------------------------- Time 5.57 secs. ******************************************************************************** ******************************************************************************** MOTIF TCTYSYTT MEME-3 width = 8 sites = 6 llr = 55 E-value = 1.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTYSYTT MEME-3 Description -------------------------------------------------------------------------------- Simplified A 2:::::22 pos.-specific C :a:555:: probability G ::::52:: matrix T 8:a5:388 bits 2.9 * 2.6 * 2.3 * * ** 2.0 * * ** Relative 1.7 * * ** Entropy 1.4 *** ** (13.3 bits) 1.2 **** ** 0.9 **** ** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel TCTCCCTT consensus TGT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYSYTT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr5:52095866-52095886 3 6.96e-06 CC TCTCCTTT GGGGACGGGA chr13:50656327-50656347 11 1.35e-05 GGTGCACGGC TCTCCCTT TG chr19:42721988-42722008 12 2.72e-05 AACCGAAGCA TCTTGGTT C chr1:170043863-170043883 12 2.72e-05 GCTCTGCACC TCTTGTAT G chr1:16162512-16162532 3 3.30e-05 CC ACTTCCTT GGCCTTTGAG chr13:21348109-21348129 8 9.28e-05 TAGCCAG TCTCGCTA GCGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYSYTT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:52095866-52095886 7e-06 2_[+3]_10 chr13:50656327-50656347 1.4e-05 10_[+3]_2 chr19:42721988-42722008 2.7e-05 11_[+3]_1 chr1:170043863-170043883 2.7e-05 11_[+3]_1 chr1:16162512-16162532 3.3e-05 2_[+3]_10 chr13:21348109-21348129 9.3e-05 7_[+3]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYSYTT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTYSYTT width=8 seqs=6 chr5:52095866-52095886 ( 3) TCTCCTTT 1 chr13:50656327-50656347 ( 11) TCTCCCTT 1 chr19:42721988-42722008 ( 12) TCTTGGTT 1 chr1:170043863-170043883 ( 12) TCTTGTAT 1 chr1:16162512-16162532 ( 3) ACTTCCTT 1 chr13:21348109-21348129 ( 8) TCTCGCTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYSYTT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.1796 E= 1.9e+003 21 -923 -923 263 -923 153 -923 -923 -923 -923 -923 289 -923 53 -923 189 -923 53 41 -923 -923 53 -117 131 21 -923 -923 263 21 -923 -923 263 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYSYTT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 1.9e+003 0.166667 0.000000 0.000000 0.833333 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.500000 0.500000 0.000000 0.000000 0.500000 0.166667 0.333333 0.166667 0.000000 0.000000 0.833333 0.166667 0.000000 0.000000 0.833333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYSYTT MEME-3 regular expression -------------------------------------------------------------------------------- TCT[CT][CG][CT]TT -------------------------------------------------------------------------------- Time 8.41 secs. ******************************************************************************** ******************************************************************************** MOTIF WWCCTCAA MEME-4 width = 8 sites = 2 llr = 23 E-value = 3.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif WWCCTCAA MEME-4 Description -------------------------------------------------------------------------------- Simplified A 55::::aa pos.-specific C ::aa:a:: probability G :::::::: matrix T 55::a::: bits 2.9 * ** 2.6 * ** 2.3 * ** 2.0 * ** Relative 1.7 ** * ** Entropy 1.4 ******** (16.8 bits) 1.2 ******** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel AACCTCAA consensus TT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WWCCTCAA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:85742444-85742464 7 2.07e-06 GGGCGT TTCCTCAA GCCACG chr17:6927067-6927087 2 8.90e-06 C AACCTCAA CGAGCTGCGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WWCCTCAA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:85742444-85742464 2.1e-06 6_[+4]_6 chr17:6927067-6927087 8.9e-06 1_[+4]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WWCCTCAA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WWCCTCAA width=8 seqs=2 chr1:85742444-85742464 ( 7) TTCCTCAA 1 chr17:6927067-6927087 ( 2) AACCTCAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WWCCTCAA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.6653 E= 3.0e+003 179 -765 -765 189 179 -765 -765 189 -765 153 -765 -765 -765 153 -765 -765 -765 -765 -765 289 -765 153 -765 -765 279 -765 -765 -765 279 -765 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WWCCTCAA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.0e+003 0.500000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WWCCTCAA MEME-4 regular expression -------------------------------------------------------------------------------- [AT][AT]CCTCAA -------------------------------------------------------------------------------- Time 11.01 secs. ******************************************************************************** ******************************************************************************** MOTIF GAMTKWTT MEME-5 width = 8 sites = 2 llr = 24 E-value = 4.7e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAMTKWTT MEME-5 Description -------------------------------------------------------------------------------- Simplified A :a5::5:: pos.-specific C ::5::::: probability G a:::5::: matrix T :::a55aa bits 2.9 * * ** 2.6 * * ** 2.3 * * ** 2.0 * * ** Relative 1.7 * * *** Entropy 1.4 ** * *** (17.1 bits) 1.2 ******** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GAATGATT consensus C TT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAMTKWTT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr20:37101363-37101383 13 6.97e-07 TGTGTCTCGG GAATTATT chr4:2243901-2243921 9 6.58e-06 TGGGGGAT GACTGTTT GCGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAMTKWTT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr20:37101363-37101383 7e-07 12_[+5] chr4:2243901-2243921 6.6e-06 8_[+5]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAMTKWTT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAMTKWTT width=8 seqs=2 chr20:37101363-37101383 ( 13) GAATTATT 1 chr4:2243901-2243921 ( 9) GACTGTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAMTKWTT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.6653 E= 4.7e+003 -765 -765 141 -765 279 -765 -765 -765 179 53 -765 -765 -765 -765 -765 289 -765 -765 41 189 179 -765 -765 189 -765 -765 -765 289 -765 -765 -765 289 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAMTKWTT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 4.7e+003 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.500000 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAMTKWTT MEME-5 regular expression -------------------------------------------------------------------------------- GA[AC]T[GT][AT]TT -------------------------------------------------------------------------------- Time 11.75 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:6487613-6487633 1.00e+00 20 chr2:61372152-61372172 4.20e-03 8_[+1(1.62e-05)]_4 chr10:27389461-27389481 1.21e-01 20 chr20:35580164-35580184 9.86e-02 20 chr17:8103576-8103596 1.28e-02 20 chr17:27169848-27169868 2.43e-01 20 chr19:46406089-46406109 4.28e-01 20 chr2:113012704-113012724 7.04e-01 20 chr9:139685764-139685784 4.85e-01 20 chr5:130501006-130501026 9.93e-02 20 chr22:28315399-28315419 8.27e-01 20 chr12:69753468-69753488 2.20e-02 20 chr6:24403132-24403152 9.85e-01 20 chr1:46152299-46152319 9.24e-02 20 chr1:170043863-170043883 3.29e-04 11_[+3(2.72e-05)]_1 chr19:35615537-35615557 2.03e-01 20 chr17:47754933-47754953 9.34e-01 20 chr20:25176256-25176276 7.85e-01 20 chr22:24200013-24200033 3.65e-02 20 chr9:124922066-124922086 1.57e-02 20 chr21:34697246-34697266 8.78e-01 20 chr17:27278690-27278710 7.33e-02 20 chr16:27215181-27215201 1.82e-01 20 chr6:109169606-109169626 3.38e-01 20 chr7:149571026-149571046 9.04e-02 20 chr19:19303525-19303545 1.36e-01 20 chr5:112043153-112043173 4.47e-01 20 chr20:57618039-57618059 9.37e-01 20 chr1:231473664-231473684 2.02e-01 20 chr10:124639132-12463915 1.87e-01 20 chr1:21113318-21113338 8.19e-01 20 chr19:56116800-56116820 2.67e-02 20 chr21:35747700-35747720 7.24e-02 11_[+1(6.18e-05)]_1 chr19:11071417-11071437 7.05e-01 20 chr1:167189812-167189832 5.19e-01 20 chr16:8715493-8715513 9.91e-01 20 chr20:3185072-3185092 9.18e-01 20 chr5:133562009-133562029 1.01e-02 8_[+1(1.62e-05)]_4 chr5:34008272-34008292 6.20e-01 20 chr11:63448852-63448872 1.61e-03 20 chr5:132073341-132073361 5.21e-02 20 chr17:3572032-3572052 7.09e-01 20 chr13:21348109-21348129 1.15e-02 7_[+3(9.28e-05)]_5 chr2:101925174-101925194 5.19e-02 20 chr19:6199673-6199693 8.56e-01 20 chr5:179105579-179105599 2.81e-01 20 chr7:44621865-44621885 5.55e-01 20 chr16:31471236-31471256 3.26e-01 20 chr18:66382407-66382427 7.11e-01 20 chr1:16162512-16162532 6.87e-04 2_[+3(3.30e-05)]_10 chr19:18794388-18794408 7.24e-02 9_[+1(6.18e-05)]_3 chrX:40506847-40506867 4.70e-01 20 chr2:3522839-3522859 2.47e-02 [+1(1.62e-05)]_12 chr12:12939959-12939979 5.82e-01 20 chr11:65101283-65101303 9.72e-01 20 chr8:117887121-117887141 8.42e-01 20 chr9:79792406-79792426 3.02e-01 20 chr13:49106820-49106840 8.89e-01 20 chr2:33824387-33824407 3.49e-01 20 chr14:89029288-89029308 5.45e-01 20 chr4:54243751-54243771 9.50e-01 20 chr2:71558856-71558876 9.69e-01 20 chrX:7066248-7066268 3.08e-02 20 chr11:1330937-1330957 8.98e-01 20 chr13:40229773-40229793 2.13e-02 20 chr5:138678083-138678103 5.09e-02 20 chr2:264880-264900 9.93e-01 20 chr7:5229815-5229835 2.58e-01 20 chr16:89574762-89574782 6.97e-01 20 chr1:16174026-16174046 4.83e-01 20 chr17:8339029-8339049 2.87e-02 10_[+1(6.18e-05)]_2 chr16:29984944-29984964 4.26e-01 20 chr8:94753287-94753307 1.49e-02 6_[+1(7.69e-05)]_6 chr1:35734245-35734265 9.93e-01 20 chr6:44095168-44095188 9.31e-01 20 chr3:111697808-111697828 2.53e-01 20 chr19:3987911-3987931 3.47e-02 20 chr5:52095866-52095886 4.17e-04 2_[+3(6.96e-06)]_10 chr19:34895264-34895284 2.05e-01 20 chr6:52535860-52535880 2.59e-01 20 chr4:54958084-54958104 1.02e-01 20 chr15:75199236-75199256 1.41e-01 20 chr11:59436574-59436594 9.18e-02 20 chr14:39583488-39583508 2.05e-01 20 chr12:120554684-12055470 1.14e-02 3_[+1(7.69e-05)]_9 chr8:55014672-55014692 7.11e-04 3_[+1(6.18e-05)]_9 chr4:6717741-6717761 4.28e-01 20 chr19:40030809-40030829 2.02e-01 20 chr3:52232100-52232120 7.31e-01 20 chr7:142985399-142985419 5.70e-01 20 chrX:152864789-152864809 2.89e-01 20 chr16:56553971-56553991 6.98e-01 20 chr16:4234024-4234044 7.25e-01 20 chr13:108867915-10886793 9.99e-01 20 chr1:161129221-161129241 9.81e-01 20 chr5:218318-218338 2.18e-01 20 chr2:170655305-170655325 9.52e-01 20 chr12:102224818-10222483 9.19e-01 20 chr11:65420479-65420499 2.37e-05 5_[+2(2.85e-06)]_7 chr6:30614775-30614795 6.62e-01 20 chr19:16582821-16582841 1.00e+00 20 chr2:216979593-216979613 2.16e-01 20 chr19:17622365-17622385 4.02e-01 20 chr12:57623439-57623459 5.61e-02 20 chr11:65029284-65029304 2.99e-02 20 chr1:84971910-84971930 1.01e-01 20 chr1:202858309-202858329 9.99e-01 20 chr2:19547800-19547820 3.24e-01 20 chr19:46850200-46850220 8.67e-02 8_[+1(6.18e-05)]_4 chr5:52405635-52405655 6.76e-01 20 chr19:5978258-5978278 7.93e-01 20 chr1:226070086-226070106 4.68e-03 9_[+1(1.62e-05)]_3 chr2:28974545-28974565 7.86e-01 20 chr4:6675649-6675669 7.02e-01 20 chr16:71598874-71598894 1.36e-01 20 chr21:48055505-48055525 2.98e-01 20 chr8:145137456-145137476 4.81e-01 20 chr2:27357516-27357536 3.20e-01 20 chr12:132568802-13256882 9.81e-01 20 chr8:142011493-142011513 9.25e-02 20 chr13:48575440-48575460 2.84e-01 20 chr19:39340088-39340108 1.13e-01 20 chr14:102771530-10277155 4.60e-01 20 chr8:80695840-80695860 1.04e-02 8_[+1(1.62e-05)]_4 chr11:64085553-64085573 2.89e-02 10_[+1(6.18e-05)]_2 chr13:50656327-50656347 6.05e-04 10_[+3(1.35e-05)]_2 chr6:121655638-121655658 7.66e-02 20 chr17:17739588-17739608 8.97e-01 20 chr20:37101363-37101383 3.14e-05 12_[+5(6.97e-07)] chr4:123073449-123073469 9.01e-01 20 chr15:41952573-41952593 5.56e-01 20 chr5:137225091-137225111 9.94e-01 20 chr6:13328813-13328833 9.40e-01 20 chr6:153304772-153304792 6.84e-01 20 chr1:1709915-1709935 5.39e-01 20 chr1:109756518-109756538 8.67e-01 20 chr6:30881977-30881997 1.80e-01 20 chr6:10404461-10404481 4.50e-01 20 chr9:103361200-103361220 8.98e-01 20 chr17:57297785-57297805 7.75e-02 20 chr11:76092339-76092359 7.70e-01 20 chr3:47555240-47555260 1.27e-01 20 chr16:2933225-2933245 4.96e-02 20 chr16:67694241-67694261 4.40e-01 20 chr20:35402238-35402258 4.61e-01 20 chr3:14166465-14166485 7.52e-02 20 chr17:18087073-18087093 3.54e-02 20 chr21:33651479-33651499 3.16e-01 20 chr3:106959512-106959532 5.08e-01 20 chr19:2785385-2785405 5.63e-01 20 chr19:42721988-42722008 4.04e-04 11_[+3(2.72e-05)]_1 chr12:111021243-11102126 1.39e-02 6_[+1(1.62e-05)]_6 chrX:48456512-48456532 3.86e-01 20 chr1:32671214-32671234 8.62e-01 20 chr8:26435403-26435423 6.57e-01 20 chr19:3762992-3763012 4.15e-02 20 chr11:134094465-13409448 9.62e-01 20 chr10:50747156-50747176 7.11e-02 20 chr9:131843660-131843680 7.95e-01 20 chr4:26862265-26862285 4.75e-02 20 chr11:60681577-60681597 5.15e-01 20 chr10:86088286-86088306 9.92e-01 20 chr16:3661611-3661631 7.86e-01 20 chr16:66586432-66586452 1.29e-01 20 chr10:120967017-12096703 2.89e-02 2_[+1(7.69e-05)]_10 chr16:67753290-67753310 4.02e-01 20 chr9:139010816-139010836 5.27e-01 20 chr3:12525876-12525896 4.28e-01 20 chr16:4401343-4401363 8.10e-01 20 chr9:115142220-115142240 8.17e-01 20 chr10:73976074-73976094 6.95e-01 20 chr4:2243901-2243921 4.44e-04 8_[+5(6.58e-06)]_4 chr6:88118331-88118351 6.51e-02 20 chr9:116139251-116139271 5.14e-01 20 chr17:29421866-29421886 8.40e-01 20 chr17:6927067-6927087 4.57e-03 1_[+4(8.90e-06)]_11 chr13:50510695-50510715 8.70e-02 4_[+1(6.18e-05)]_8 chr10:133795539-13379555 7.43e-01 20 chr7:116502490-116502510 7.17e-01 20 chr4:44728626-44728646 7.02e-01 20 chr16:188729-188749 2.87e-01 20 chr11:118901617-11890163 9.39e-01 20 chr15:101142419-10114243 9.78e-02 20 chr2:103353358-103353378 9.38e-02 1_[+1(6.18e-05)]_11 chr17:66244174-66244194 4.99e-01 20 chr8:23103952-23103972 9.80e-01 20 chr6:39082964-39082984 8.00e-01 20 chr18:48556564-48556584 2.45e-01 20 chr19:48867310-48867330 1.62e-01 20 chr5:141704664-141704684 1.31e-01 20 chr19:39138232-39138252 1.47e-01 20 chr12:27090943-27090963 3.91e-01 20 chr11:64072815-64072835 8.64e-01 20 chr7:56131926-56131946 8.45e-01 20 chr17:9479918-9479938 1.56e-01 20 chr5:10441935-10441955 1.50e-01 20 chr7:6388667-6388687 1.59e-05 1_[+2(7.51e-07)]_11 chrX:48901348-48901368 7.20e-01 20 chr19:40023528-40023548 6.17e-01 20 chr19:16940155-16940175 9.12e-01 20 chr7:128502818-128502838 8.48e-04 [+1(2.29e-05)]_12 chr19:34850279-34850299 6.93e-01 20 chr3:49591869-49591889 9.05e-01 20 chr22:21356088-21356108 8.66e-01 20 chr17:36714571-36714591 5.65e-04 20 chr10:38146598-38146618 3.85e-02 20 chr15:29562058-29562078 9.90e-01 20 chr15:65321963-65321983 8.99e-02 11_[+1(6.18e-05)]_1 chr18:10525867-10525887 1.68e-01 20 chr2:37311548-37311568 7.79e-01 20 chr17:37213278-37213298 4.00e-01 20 chr3:157816014-157816034 9.27e-01 20 chr6:57087096-57087116 3.49e-02 20 chr5:1594661-1594681 7.63e-01 20 chr10:70231720-70231740 4.12e-02 20 chr10:22629301-22629321 5.10e-01 20 chr19:40324915-40324935 8.63e-01 20 chr1:40349183-40349203 4.78e-01 20 chr1:85742444-85742464 2.72e-04 6_[+4(2.07e-06)]_6 chr4:1242507-1242527 3.84e-04 2_[+1(1.62e-05)]_10 chr8:9912215-9912235 1.59e-01 20 chr11:66512171-66512191 6.57e-01 20 chr1:109756981-109757001 3.92e-01 20 chr11:47664276-47664296 4.62e-02 20 chr20:62526400-62526420 2.03e-02 [+1(1.62e-05)]_12 chr17:57970323-57970343 5.42e-01 20 chr19:44259100-44259120 7.77e-03 20 chr13:52158425-52158445 1.57e-03 20 chr19:19144403-19144423 9.96e-01 20 chr2:70056727-70056747 4.71e-01 20 chr15:42787808-42787828 8.70e-01 20 chr3:47017977-47017997 9.16e-04 20 chr7:156433278-156433298 7.30e-01 20 chr19:42829546-42829566 9.73e-01 20 chr2:118771751-118771771 9.37e-01 20 chr8:97247842-97247862 9.85e-01 20 chr7:12250816-12250836 4.13e-01 20 chr14:96968658-96968678 7.56e-01 20 chr3:156807002-156807022 9.60e-01 20 chr6:117923700-117923720 9.38e-01 20 chr19:797902-797922 4.98e-01 20 chr17:73105984-73106004 4.97e-01 20 chr19:44079745-44079765 8.54e-01 20 chr1:200379202-200379222 1.00e+00 20 chr21:30257695-30257715 3.76e-02 12_[+1(1.62e-05)] chrX:348003-348023 8.89e-01 20 chr1:24306954-24306974 5.59e-02 [+1(6.18e-05)]_12 chr16:27561242-27561262 6.44e-01 20 chr1:91966393-91966413 1.46e-01 20 chr9:6008639-6008659 6.65e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n09.farnam.hpc.yale.internal ********************************************************************************