******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/NR2C2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr15:83781902-83781922 1.0000 20 chr19:1068296-1068316 1.0000 20 chr18:54318864-54318884 1.0000 20 chr19:49311197-49311217 1.0000 20 chr22:47158800-47158820 1.0000 20 chr19:11513101-11513121 1.0000 20 chr1:246859930-246859950 1.0000 20 chr15:101874540-10187456 1.0000 20 chr12:48551249-48551269 1.0000 20 chr16:30392419-30392439 1.0000 20 chr10:103815544-10381556 1.0000 20 chr4:8703492-8703512 1.0000 20 chr18:55578239-55578259 1.0000 20 chr1:202594011-202594031 1.0000 20 chr20:633059-633079 1.0000 20 chr2:61244763-61244783 1.0000 20 chr12:117566080-11756610 1.0000 20 chr18:22006534-22006554 1.0000 20 chr9:97845738-97845758 1.0000 20 chr19:35168186-35168206 1.0000 20 chr9:134378345-134378365 1.0000 20 chr19:17490188-17490208 1.0000 20 chr19:2328604-2328624 1.0000 20 chr12:96252692-96252712 1.0000 20 chr3:37217881-37217901 1.0000 20 chr16:30198551-30198571 1.0000 20 chr7:1015184-1015204 1.0000 20 chr20:49198739-49198759 1.0000 20 chr15:63413897-63413917 1.0000 20 chr1:8613167-8613187 1.0000 20 chr6:31927108-31927128 1.0000 20 chr2:27603210-27603230 1.0000 20 chr16:30710529-30710549 1.0000 20 chr12:133527848-13352786 1.0000 20 chr19:39616700-39616720 1.0000 20 chr17:58213153-58213173 1.0000 20 chr1:27675502-27675522 1.0000 20 chr10:103348022-10334804 1.0000 20 chr21:30375091-30375111 1.0000 20 chr2:4727138-4727158 1.0000 20 chr18:77342098-77342118 1.0000 20 chr16:67700677-67700697 1.0000 20 chr19:633192-633212 1.0000 20 chr17:75446657-75446677 1.0000 20 chr1:206911883-206911903 1.0000 20 chr17:40318605-40318625 1.0000 20 chr4:668055-668075 1.0000 20 chr1:18458755-18458775 1.0000 20 chr20:44486383-44486403 1.0000 20 chr19:1905791-1905811 1.0000 20 chr19:10887703-10887723 1.0000 20 chr20:42087889-42087909 1.0000 20 chr12:132027826-13202784 1.0000 20 chr1:11862842-11862862 1.0000 20 chr2:27994598-27994618 1.0000 20 chr4:84198507-84198527 1.0000 20 chr11:32605342-32605362 1.0000 20 chr1:26615093-26615113 1.0000 20 chr12:70637161-70637181 1.0000 20 chr11:71639504-71639524 1.0000 20 chr11:118868835-11886885 1.0000 20 chr20:32398890-32398910 1.0000 20 chr3:194024060-194024080 1.0000 20 chr3:12705704-12705724 1.0000 20 chr16:27214799-27214819 1.0000 20 chr3:39149123-39149143 1.0000 20 chr12:56401107-56401127 1.0000 20 chr2:219433476-219433496 1.0000 20 chr13:41837678-41837698 1.0000 20 chr11:415456-415476 1.0000 20 chr22:37260190-37260210 1.0000 20 chr21:46221736-46221756 1.0000 20 chr1:32860014-32860034 1.0000 20 chr1:171711246-171711266 1.0000 20 chr19:49713442-49713462 1.0000 20 chr17:37027865-37027885 1.0000 20 chr9:36258465-36258485 1.0000 20 chr19:19745204-19745224 1.0000 20 chr17:1371249-1371269 1.0000 20 chr8:21867711-21867731 1.0000 20 chr6:53534573-53534593 1.0000 20 chrX:1511462-1511482 1.0000 20 chr13:103046896-10304691 1.0000 20 chr5:94206712-94206732 1.0000 20 chr15:31196009-31196029 1.0000 20 chr11:45939752-45939772 1.0000 20 chr5:176981622-176981642 1.0000 20 chr1:53480539-53480559 1.0000 20 chrX:48455861-48455881 1.0000 20 chr1:213224543-213224563 1.0000 20 chr2:64246992-64247012 1.0000 20 chr3:125153761-125153781 1.0000 20 chr10:73467362-73467382 1.0000 20 chr15:41408601-41408621 1.0000 20 chr7:144533120-144533140 1.0000 20 chr2:232826443-232826463 1.0000 20 chr16:47007613-47007633 1.0000 20 chr19:15543652-15543672 1.0000 20 chr11:111957588-11195760 1.0000 20 chr10:75541800-75541820 1.0000 20 chr9:138666270-138666290 1.0000 20 chr12:53497957-53497977 1.0000 20 chr1:28415064-28415084 1.0000 20 chr5:1801529-1801549 1.0000 20 chr12:498809-498829 1.0000 20 chr1:45452342-45452362 1.0000 20 chr2:26694896-26694916 1.0000 20 chr4:1634667-1634687 1.0000 20 chr2:109065612-109065632 1.0000 20 chr2:39103062-39103082 1.0000 20 chr14:75643336-75643356 1.0000 20 chr17:61920576-61920596 1.0000 20 chr7:100178473-100178493 1.0000 20 chr4:57333734-57333754 1.0000 20 chr5:64920809-64920829 1.0000 20 chr18:72798633-72798653 1.0000 20 chr2:203776408-203776428 1.0000 20 chr11:118889067-11888908 1.0000 20 chr2:20365805-20365825 1.0000 20 chr19:37064202-37064222 1.0000 20 chr4:47916855-47916875 1.0000 20 chr3:49195721-49195741 1.0000 20 chr17:34842376-34842396 1.0000 20 chr12:113438430-11343845 1.0000 20 chr19:14682879-14682899 1.0000 20 chr17:37769342-37769362 1.0000 20 chr2:209130820-209130840 1.0000 20 chr14:75593766-75593786 1.0000 20 chr19:50919434-50919454 1.0000 20 chr16:11590877-11590897 1.0000 20 chr20:20033128-20033148 1.0000 20 chr19:10197331-10197351 1.0000 20 chr20:33103442-33103462 1.0000 20 chr7:158649152-158649172 1.0000 20 chr12:89919989-89920009 1.0000 20 chr3:52485759-52485779 1.0000 20 chr6:169326406-169326426 1.0000 20 chr20:48532263-48532283 1.0000 20 chr6:42185606-42185626 1.0000 20 chr2:70528440-70528460 1.0000 20 chr16:70669430-70669450 1.0000 20 chr1:1342693-1342713 1.0000 20 chr18:72922741-72922761 1.0000 20 chr16:2255451-2255471 1.0000 20 chr6:693137-693157 1.0000 20 chr10:1738177-1738197 1.0000 20 chr9:74526538-74526558 1.0000 20 chr20:60962115-60962135 1.0000 20 chrX:74742913-74742933 1.0000 20 chr19:18335119-18335139 1.0000 20 chr20:16710608-16710628 1.0000 20 chr12:29944562-29944582 1.0000 20 chr3:183602674-183602694 1.0000 20 chr19:965286-965306 1.0000 20 chr1:109633314-109633334 1.0000 20 chr8:120845046-120845066 1.0000 20 chr3:119395965-119395985 1.0000 20 chr5:126309154-126309174 1.0000 20 chr9:140513123-140513143 1.0000 20 chr4:123844216-123844236 1.0000 20 chr22:36725965-36725985 1.0000 20 chr8:145653958-145653978 1.0000 20 chr8:124053878-124053898 1.0000 20 chr16:30933927-30933947 1.0000 20 chr3:157827808-157827828 1.0000 20 chr11:46615635-46615655 1.0000 20 chr10:119806485-11980650 1.0000 20 chr20:30431266-30431286 1.0000 20 chr20:54967654-54967674 1.0000 20 chr6:30524691-30524711 1.0000 20 chr12:113525978-11352599 1.0000 20 chr3:100119991-100120011 1.0000 20 chr17:1933406-1933426 1.0000 20 chr1:23991519-23991539 1.0000 20 chr1:1175321-1175341 1.0000 20 chr2:153573971-153573991 1.0000 20 chr9:126985391-126985411 1.0000 20 chr8:80942466-80942486 1.0000 20 chr1:162602750-162602770 1.0000 20 chr8:144689842-144689862 1.0000 20 chr20:18118440-18118460 1.0000 20 chr22:35653425-35653445 1.0000 20 chr3:113465052-113465072 1.0000 20 chr7:98116209-98116229 1.0000 20 chr8:105601564-105601584 1.0000 20 chr19:1935678-1935698 1.0000 20 chr20:62339226-62339246 1.0000 20 chr21:30446058-30446078 1.0000 20 chr14:31889918-31889938 1.0000 20 chr1:25877631-25877651 1.0000 20 chr4:3600433-3600453 1.0000 20 chr17:80709893-80709913 1.0000 20 chr1:178062802-178062822 1.0000 20 chr1:249185010-249185030 1.0000 20 chr3:118959221-118959241 1.0000 20 chr19:2236850-2236870 1.0000 20 chr7:102937835-102937855 1.0000 20 chr2:74699778-74699798 1.0000 20 chr12:69080726-69080746 1.0000 20 chr1:36929990-36930010 1.0000 20 chr6:13615535-13615555 1.0000 20 chr3:124847846-124847866 1.0000 20 chr14:95623979-95623999 1.0000 20 chr20:62019337-62019357 1.0000 20 chr9:19998326-19998346 1.0000 20 chr9:94474046-94474066 1.0000 20 chr3:48481514-48481534 1.0000 20 chr1:33282983-33283003 1.0000 20 chr8:96037217-96037237 1.0000 20 chr17:55927549-55927569 1.0000 20 chr1:229923819-229923839 1.0000 20 chr19:10363211-10363231 1.0000 20 chr7:157091807-157091827 1.0000 20 chr20:35918065-35918085 1.0000 20 chr16:58121060-58121080 1.0000 20 chr7:99679353-99679373 1.0000 20 chr19:1205294-1205314 1.0000 20 chr20:34287267-34287287 1.0000 20 chr7:25990826-25990846 1.0000 20 chr12:49961921-49961941 1.0000 20 chr1:226374424-226374444 1.0000 20 chr8:142171197-142171217 1.0000 20 chr12:82752229-82752249 1.0000 20 chr2:200820445-200820465 1.0000 20 chr5:93954313-93954333 1.0000 20 chr6:96025690-96025710 1.0000 20 chr6:367713-367733 1.0000 20 chr16:23652702-23652722 1.0000 20 chr17:38137014-38137034 1.0000 20 chr3:15140676-15140696 1.0000 20 chr12:6665308-6665328 1.0000 20 chr10:30287089-30287109 1.0000 20 chr3:142720344-142720364 1.0000 20 chr16:86065046-86065066 1.0000 20 chr16:19729555-19729575 1.0000 20 chr14:105885730-10588575 1.0000 20 chr8:110552369-110552389 1.0000 20 chr9:136890530-136890550 1.0000 20 chr10:7860398-7860418 1.0000 20 chr2:152266332-152266352 1.0000 20 chr12:2113690-2113710 1.0000 20 chr7:123197901-123197921 1.0000 20 chr10:62580445-62580465 1.0000 20 chr21:27107394-27107414 1.0000 20 chr11:64765799-64765819 1.0000 20 chr19:42422988-42423008 1.0000 20 chr11:14541925-14541945 1.0000 20 chr16:12897839-12897859 1.0000 20 chr19:49015811-49015831 1.0000 20 chr1:6761867-6761887 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_NR2C2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/NR2C2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.204 C 0.309 G 0.295 T 0.192 Background letter frequencies (from file dataset with add-one prior applied): A 0.204 C 0.309 G 0.295 T 0.192 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF KCAGAGGT MEME-1 width = 8 sites = 23 llr = 193 E-value = 1.5e-011 ******************************************************************************** -------------------------------------------------------------------------------- Motif KCAGAGGT MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::a39::: pos.-specific C :a:::::1 probability G 4::71aa1 matrix T 6::::::8 bits 2.4 2.1 * 1.9 * 1.7 ** * Relative 1.4 ** **** Entropy 1.2 *** **** (12.1 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TCAGAGGT consensus G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCAGAGGT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr16:70669430-70669450 9 1.22e-05 GTCAGAGG TCAGAGGT CGGA chr2:70528440-70528460 7 1.22e-05 TGGGGT TCAGAGGT CAGCAA chr13:103046896-10304691 12 1.22e-05 CGCCCTAGGG TCAGAGGT C chr4:8703492-8703512 1 1.22e-05 . TCAGAGGT CGGAGGTCAG chr16:30392419-30392439 9 1.22e-05 GTCAAAGG TCAGAGGT CATC chr3:118959221-118959241 2 2.06e-05 G TCAAAGGT CGCCGGCCCC chr20:30431266-30431286 11 2.06e-05 TCAGAGAAGG TCAAAGGT CA chr19:10197331-10197351 11 2.06e-05 GGCTGCAGGG TCAAAGGT CA chr19:19745204-19745224 12 2.06e-05 AAAACACAGG TCAAAGGT C chr12:6665308-6665328 7 3.93e-05 AGCGGG GCAGAGGT CAGGGG chr12:498809-498829 2 3.93e-05 G GCAGAGGT TGTGCTTCCG chr18:55578239-55578259 3 3.93e-05 GG GCAGAGGT GCCCAACGGA chr19:37064202-37064222 9 5.22e-05 AAAAGGAA GCAAAGGT CGAA chr19:11513101-11513121 3 6.98e-05 GG TCAGGGGT CAAGGGTCAG chr18:54318864-54318884 8 6.98e-05 GTGGAGG TCAGGGGT CAGGG chr11:118868835-11886885 11 1.36e-04 GGGGTCAGGG TCAGAGGC CG chr1:26615093-26615113 13 1.36e-04 aggagtaagg tcagaggg chr6:30524691-30524711 5 2.12e-04 GAGG TCAAAGGG CACGAAGT chr1:162602750-162602770 4 3.22e-04 ATT GCAGAGTT AGTTTCAGG chr3:119395965-119395985 1 3.22e-04 . gcagaggc cgtagggcag chr6:53534573-53534593 4 3.22e-04 GTT GCAGATGT ATGGACAGT chr2:61244763-61244783 11 3.22e-04 TGTCCTGACT GCAAGGGT GG chr12:48551249-48551269 4 3.39e-04 TGG GCTGAGGT GGGGGTTGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCAGAGGT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:70669430-70669450 1.2e-05 8_[+1]_4 chr2:70528440-70528460 1.2e-05 6_[+1]_6 chr13:103046896-10304691 1.2e-05 11_[+1]_1 chr4:8703492-8703512 1.2e-05 [+1]_12 chr16:30392419-30392439 1.2e-05 8_[+1]_4 chr3:118959221-118959241 2.1e-05 1_[+1]_11 chr20:30431266-30431286 2.1e-05 10_[+1]_2 chr19:10197331-10197351 2.1e-05 10_[+1]_2 chr19:19745204-19745224 2.1e-05 11_[+1]_1 chr12:6665308-6665328 3.9e-05 6_[+1]_6 chr12:498809-498829 3.9e-05 1_[+1]_11 chr18:55578239-55578259 3.9e-05 2_[+1]_10 chr19:37064202-37064222 5.2e-05 8_[+1]_4 chr19:11513101-11513121 7e-05 2_[+1]_10 chr18:54318864-54318884 7e-05 7_[+1]_5 chr11:118868835-11886885 0.00014 10_[+1]_2 chr1:26615093-26615113 0.00014 12_[+1] chr6:30524691-30524711 0.00021 4_[+1]_8 chr1:162602750-162602770 0.00032 3_[+1]_9 chr3:119395965-119395985 0.00032 [+1]_12 chr6:53534573-53534593 0.00032 3_[+1]_9 chr2:61244763-61244783 0.00032 10_[+1]_2 chr12:48551249-48551269 0.00034 3_[+1]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCAGAGGT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KCAGAGGT width=8 seqs=23 chr16:70669430-70669450 ( 9) TCAGAGGT 1 chr2:70528440-70528460 ( 7) TCAGAGGT 1 chr13:103046896-10304691 ( 12) TCAGAGGT 1 chr4:8703492-8703512 ( 1) TCAGAGGT 1 chr16:30392419-30392439 ( 9) TCAGAGGT 1 chr3:118959221-118959241 ( 2) TCAAAGGT 1 chr20:30431266-30431286 ( 11) TCAAAGGT 1 chr19:10197331-10197351 ( 11) TCAAAGGT 1 chr19:19745204-19745224 ( 12) TCAAAGGT 1 chr12:6665308-6665328 ( 7) GCAGAGGT 1 chr12:498809-498829 ( 2) GCAGAGGT 1 chr18:55578239-55578259 ( 3) GCAGAGGT 1 chr19:37064202-37064222 ( 9) GCAAAGGT 1 chr19:11513101-11513121 ( 3) TCAGGGGT 1 chr18:54318864-54318884 ( 8) TCAGGGGT 1 chr11:118868835-11886885 ( 11) TCAGAGGC 1 chr1:26615093-26615113 ( 13) TCAGAGGG 1 chr6:30524691-30524711 ( 5) TCAAAGGG 1 chr1:162602750-162602770 ( 4) GCAGAGTT 1 chr3:119395965-119395985 ( 1) GCAGAGGC 1 chr6:53534573-53534593 ( 4) GCAGATGT 1 chr2:61244763-61244783 ( 11) GCAAGGGT 1 chr12:48551249-48551269 ( 4) GCTGAGGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCAGAGGT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.53746 E= 1.5e-011 -1117 -1117 41 166 -1117 170 -1117 -1117 223 -1117 -1117 -214 58 -1117 124 -1117 209 -1117 -117 -1117 -1117 -1117 170 -214 -1117 -1117 170 -214 -1117 -183 -176 210 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCAGAGGT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 1.5e-011 0.000000 0.000000 0.391304 0.608696 0.000000 1.000000 0.000000 0.000000 0.956522 0.000000 0.000000 0.043478 0.304348 0.000000 0.695652 0.000000 0.869565 0.000000 0.130435 0.000000 0.000000 0.000000 0.956522 0.043478 0.000000 0.000000 0.956522 0.043478 0.000000 0.086957 0.086957 0.826087 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCAGAGGT MEME-1 regular expression -------------------------------------------------------------------------------- [TG]CA[GA]AGGT -------------------------------------------------------------------------------- Time 3.75 secs. ******************************************************************************** ******************************************************************************** MOTIF TGACCTCT MEME-2 width = 8 sites = 17 llr = 154 E-value = 1.2e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGACCTCT MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::a1::11 pos.-specific C :1:9a:62 probability G :9:::::1 matrix T a::::a36 bits 2.4 * * * 2.1 * * * 1.9 * * * 1.7 * * ** Relative 1.4 ****** Entropy 1.2 ****** (13.1 bits) 1.0 ****** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGACCTCT consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACCTCT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:226374424-226374444 11 1.26e-05 GACTTCCTGC TGACCTCT GA chr3:125153761-125153781 4 1.26e-05 CCC TGACCTCT AACCCCTGA chr19:49713442-49713462 5 1.26e-05 CCTT TGACCTCT GGCCTTTG chr20:633059-633079 5 1.26e-05 CCCT TGACCTCT CCCACTTC chr15:83781902-83781922 12 1.26e-05 CAGCATGCTT TGACCTCT G chr20:44486383-44486403 10 2.04e-05 CTCATAGTG TGACCTTT GAC chr1:27675502-27675522 7 2.04e-05 CCAATA TGACCTTT GACCTC chr16:30198551-30198571 12 2.04e-05 CCATCTACCC TGACCTTT G chr2:74699778-74699798 12 5.40e-05 GCTGCCATGG TGACCTCC G chr8:21867711-21867731 13 5.40e-05 CCACCTGGCC TGACCTCC chr19:2328604-2328624 7 5.40e-05 GCCCTT TGACCTCC CCCACG chr19:49311197-49311217 3 5.40e-05 TT TGACCTCA CAAGGCCTCT chr1:18458755-18458775 7 6.22e-05 ACACAC TGACCTAT GACAAG chr20:42087889-42087909 12 8.31e-05 ACCCTTTGGC TGACCTTA C chr19:50919434-50919454 7 9.14e-05 CCCTTG TGAACTCT GACCCT chr14:75643336-75643356 12 1.29e-04 CCCACGTGAC TCACCTCT G chr1:246859930-246859950 1 1.49e-04 . TGACCTTG TCTCAGCAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACCTCT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:226374424-226374444 1.3e-05 10_[+2]_2 chr3:125153761-125153781 1.3e-05 3_[+2]_9 chr19:49713442-49713462 1.3e-05 4_[+2]_8 chr20:633059-633079 1.3e-05 4_[+2]_8 chr15:83781902-83781922 1.3e-05 11_[+2]_1 chr20:44486383-44486403 2e-05 9_[+2]_3 chr1:27675502-27675522 2e-05 6_[+2]_6 chr16:30198551-30198571 2e-05 11_[+2]_1 chr2:74699778-74699798 5.4e-05 11_[+2]_1 chr8:21867711-21867731 5.4e-05 12_[+2] chr19:2328604-2328624 5.4e-05 6_[+2]_6 chr19:49311197-49311217 5.4e-05 2_[+2]_10 chr1:18458755-18458775 6.2e-05 6_[+2]_6 chr20:42087889-42087909 8.3e-05 11_[+2]_1 chr19:50919434-50919454 9.1e-05 6_[+2]_6 chr14:75643336-75643356 0.00013 11_[+2]_1 chr1:246859930-246859950 0.00015 [+2]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACCTCT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGACCTCT width=8 seqs=17 chr1:226374424-226374444 ( 11) TGACCTCT 1 chr3:125153761-125153781 ( 4) TGACCTCT 1 chr19:49713442-49713462 ( 5) TGACCTCT 1 chr20:633059-633079 ( 5) TGACCTCT 1 chr15:83781902-83781922 ( 12) TGACCTCT 1 chr20:44486383-44486403 ( 10) TGACCTTT 1 chr1:27675502-27675522 ( 7) TGACCTTT 1 chr16:30198551-30198571 ( 12) TGACCTTT 1 chr2:74699778-74699798 ( 12) TGACCTCC 1 chr8:21867711-21867731 ( 13) TGACCTCC 1 chr19:2328604-2328624 ( 7) TGACCTCC 1 chr19:49311197-49311217 ( 3) TGACCTCA 1 chr1:18458755-18458775 ( 7) TGACCTAT 1 chr20:42087889-42087909 ( 12) TGACCTTA 1 chr19:50919434-50919454 ( 7) TGAACTCT 1 chr14:75643336-75643356 ( 12) TCACCTCT 1 chr1:246859930-246859950 ( 1) TGACCTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACCTCT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.36909 E= 1.2e-008 -1073 -1073 -1073 238 -1073 -239 168 -1073 229 -1073 -1073 -1073 -179 161 -1073 -1073 -1073 169 -1073 -1073 -1073 -1073 -1073 238 -179 107 -1073 61 -80 -81 -232 175 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACCTCT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 1.2e-008 0.000000 0.000000 0.000000 1.000000 0.000000 0.058824 0.941176 0.000000 1.000000 0.000000 0.000000 0.000000 0.058824 0.941176 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.058824 0.647059 0.000000 0.294118 0.117647 0.176471 0.058824 0.647059 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACCTCT MEME-2 regular expression -------------------------------------------------------------------------------- TGACCT[CT]T -------------------------------------------------------------------------------- Time 6.54 secs. ******************************************************************************** ******************************************************************************** MOTIF CACACACA MEME-3 width = 8 sites = 19 llr = 165 E-value = 1.2e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACACACA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 1a:a19:8 pos.-specific C 9:9:6:9: probability G ::1:1112 matrix T ::::2::: bits 2.4 * * 2.1 * * 1.9 * * * 1.7 * * * * Relative 1.4 *** *** Entropy 1.2 **** *** (12.5 bits) 1.0 **** *** 0.7 **** *** 0.5 **** *** 0.2 ******** 0.0 -------- Multilevel CACACACA consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:367713-367733 13 1.58e-05 GACTCACATA CACACACA chr8:144689842-144689862 13 1.58e-05 TAcacacacg cacacaca chr2:20365805-20365825 7 1.58e-05 actcac cacacaca acacac chr7:100178473-100178493 5 1.58e-05 acaa cacacaca tacacaaa chr12:133527848-13352786 7 1.58e-05 gtacat cacacaca gataca chr20:62019337-62019357 8 2.56e-05 atgtatg cacataca agcac chr2:26694896-26694916 8 2.56e-05 gcatgca cacataca tgcac chr2:203776408-203776428 1 3.60e-05 . CACAAACA TCGACTACCT chr1:8613167-8613187 10 3.60e-05 CAGTACATC CACAAACA ATC chr19:49015811-49015831 10 6.15e-05 CAGCAATTG cacagaca cac chr10:30287089-30287109 8 6.15e-05 AGCTTAC AACACACA TGACA chr4:1634667-1634687 10 6.15e-05 acacacgtg cacagaca tac chr16:58121060-58121080 5 8.44e-05 cact cacacacg cacactca chr12:113438430-11343845 3 8.44e-05 tg cacacacg tactcacacc chr18:72798633-72798653 9 8.44e-05 aacgtgtg cacacacg tgtg chr1:249185010-249185030 5 9.08e-05 acac aacataca ccacacac chr19:14682879-14682899 8 1.35e-04 CCTCAGT CAGACACA GCTTC chr9:97845738-97845758 4 1.35e-04 cac cacacaga gcacacgcg chr18:77342098-77342118 3 2.60e-04 ct cacatgca cagtgcacac -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:367713-367733 1.6e-05 12_[+3] chr8:144689842-144689862 1.6e-05 12_[+3] chr2:20365805-20365825 1.6e-05 6_[+3]_6 chr7:100178473-100178493 1.6e-05 4_[+3]_8 chr12:133527848-13352786 1.6e-05 6_[+3]_6 chr20:62019337-62019357 2.6e-05 7_[+3]_5 chr2:26694896-26694916 2.6e-05 7_[+3]_5 chr2:203776408-203776428 3.6e-05 [+3]_12 chr1:8613167-8613187 3.6e-05 9_[+3]_3 chr19:49015811-49015831 6.2e-05 9_[+3]_3 chr10:30287089-30287109 6.2e-05 7_[+3]_5 chr4:1634667-1634687 6.2e-05 9_[+3]_3 chr16:58121060-58121080 8.4e-05 4_[+3]_8 chr12:113438430-11343845 8.4e-05 2_[+3]_10 chr18:72798633-72798653 8.4e-05 8_[+3]_4 chr1:249185010-249185030 9.1e-05 4_[+3]_8 chr19:14682879-14682899 0.00014 7_[+3]_5 chr9:97845738-97845758 0.00014 3_[+3]_9 chr18:77342098-77342118 0.00026 2_[+3]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACACACA width=8 seqs=19 chr6:367713-367733 ( 13) CACACACA 1 chr8:144689842-144689862 ( 13) CACACACA 1 chr2:20365805-20365825 ( 7) CACACACA 1 chr7:100178473-100178493 ( 5) CACACACA 1 chr12:133527848-13352786 ( 7) CACACACA 1 chr20:62019337-62019357 ( 8) CACATACA 1 chr2:26694896-26694916 ( 8) CACATACA 1 chr2:203776408-203776428 ( 1) CACAAACA 1 chr1:8613167-8613187 ( 10) CACAAACA 1 chr19:49015811-49015831 ( 10) CACAGACA 1 chr10:30287089-30287109 ( 8) AACACACA 1 chr4:1634667-1634687 ( 10) CACAGACA 1 chr16:58121060-58121080 ( 5) CACACACG 1 chr12:113438430-11343845 ( 3) CACACACG 1 chr18:72798633-72798653 ( 9) CACACACG 1 chr1:249185010-249185030 ( 5) AACATACA 1 chr19:14682879-14682899 ( 8) CAGACACA 1 chr9:97845738-97845758 ( 4) CACACAGA 1 chr18:77342098-77342118 ( 3) CACATGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.85576 E= 1.2e-008 -96 153 -1089 -1089 229 -1089 -1089 -1089 -1089 162 -248 -1089 229 -1089 -1089 -1089 -96 91 -148 13 221 -1089 -248 -1089 -1089 162 -248 -1089 204 -1089 -90 -1089 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 1.2e-008 0.105263 0.894737 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.947368 0.052632 0.000000 1.000000 0.000000 0.000000 0.000000 0.105263 0.578947 0.105263 0.210526 0.947368 0.000000 0.052632 0.000000 0.000000 0.947368 0.052632 0.000000 0.842105 0.000000 0.157895 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-3 regular expression -------------------------------------------------------------------------------- CACA[CT]ACA -------------------------------------------------------------------------------- Time 9.31 secs. ******************************************************************************** ******************************************************************************** MOTIF TSTGTGTK MEME-4 width = 8 sites = 12 llr = 103 E-value = 1.2e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TSTGTGTK MEME-4 Description -------------------------------------------------------------------------------- Simplified A :2:::2:: pos.-specific C :3:::::: probability G :4:a:835 matrix T a1a:a185 bits 2.4 * * * 2.1 * * * 1.9 * * * 1.7 * *** Relative 1.4 * *** * Entropy 1.2 * *** ** (12.3 bits) 1.0 * ****** 0.7 * ****** 0.5 * ****** 0.2 * ****** 0.0 -------- Multilevel TGTGTGTG consensus C GT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSTGTGTK MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:53480539-53480559 4 1.37e-05 TGC TCTGTGTT CGATTTGTT chr1:229923819-229923839 5 2.40e-05 tgtc tgtgtgtg catgcctg chr10:1738177-1738197 7 2.40e-05 catgca tgtgtgtg gggtgt chr16:11590877-11590897 12 3.94e-05 tgtgtgtagg tctgtgtg t chr7:98116209-98116229 10 4.65e-05 aggtacaca tatgtgtg cat chr19:1205294-1205314 2 5.55e-05 C TTTGTGTT ACTTTTTGAC chr9:94474046-94474066 11 8.45e-05 gtgtgtgcag tgtgtatg ag chr9:138666270-138666290 4 8.45e-05 tgt tgtgtggt gtgtctgtg chr1:202594011-202594031 3 8.45e-05 cc tgtgtggt atgtggcgtg chr7:157091807-157091827 7 1.10e-04 gtgtgt tctgtggt gtatgg chr12:69080726-69080746 2 1.31e-04 G TCTGTTTT AGGGACAGAC chr12:132027826-13202784 4 1.43e-04 gtg tatgtatg cacctgtgt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSTGTGTK MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:53480539-53480559 1.4e-05 3_[+4]_9 chr1:229923819-229923839 2.4e-05 4_[+4]_8 chr10:1738177-1738197 2.4e-05 6_[+4]_6 chr16:11590877-11590897 3.9e-05 11_[+4]_1 chr7:98116209-98116229 4.7e-05 9_[+4]_3 chr19:1205294-1205314 5.6e-05 1_[+4]_11 chr9:94474046-94474066 8.4e-05 10_[+4]_2 chr9:138666270-138666290 8.4e-05 3_[+4]_9 chr1:202594011-202594031 8.4e-05 2_[+4]_10 chr7:157091807-157091827 0.00011 6_[+4]_6 chr12:69080726-69080746 0.00013 1_[+4]_11 chr12:132027826-13202784 0.00014 3_[+4]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSTGTGTK MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TSTGTGTK width=8 seqs=12 chr1:53480539-53480559 ( 4) TCTGTGTT 1 chr1:229923819-229923839 ( 5) TGTGTGTG 1 chr10:1738177-1738197 ( 7) TGTGTGTG 1 chr16:11590877-11590897 ( 12) TCTGTGTG 1 chr7:98116209-98116229 ( 10) TATGTGTG 1 chr19:1205294-1205314 ( 2) TTTGTGTT 1 chr9:94474046-94474066 ( 11) TGTGTATG 1 chr9:138666270-138666290 ( 4) TGTGTGGT 1 chr1:202594011-202594031 ( 3) TGTGTGGT 1 chr7:157091807-157091827 ( 7) TCTGTGGT 1 chr12:69080726-69080746 ( 2) TCTGTTTT 1 chr12:132027826-13202784 ( 4) TATGTATG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSTGTGTK MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.52481 E= 1.2e+001 -1023 -1023 -1023 238 -29 11 50 -121 -1023 -1023 -1023 238 -1023 -1023 176 -1023 -1023 -1023 -1023 238 -29 -1023 135 -121 -1023 -1023 -24 196 -1023 -1023 76 138 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSTGTGTK MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 1.2e+001 0.000000 0.000000 0.000000 1.000000 0.166667 0.333333 0.416667 0.083333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.166667 0.000000 0.750000 0.083333 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 0.500000 0.500000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSTGTGTK MEME-4 regular expression -------------------------------------------------------------------------------- T[GC]TGTG[TG][GT] -------------------------------------------------------------------------------- Time 12.39 secs. ******************************************************************************** ******************************************************************************** MOTIF AAGTTKTT MEME-5 width = 8 sites = 2 llr = 23 E-value = 2.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAGTTKTT MEME-5 Description -------------------------------------------------------------------------------- Simplified A aa:::::: pos.-specific C :::::::: probability G ::a::5:: matrix T :::aa5aa bits 2.4 ** ** ** 2.1 ** ** ** 1.9 ** ** ** 1.7 ***** ** Relative 1.4 ***** ** Entropy 1.2 ******** (16.9 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AAGTTGTT consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGTTKTT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr4:123844216-123844236 9 3.20e-06 TGCCCCGG AAGTTTTT CTCT chr15:101874540-10187456 8 8.12e-06 ACACAGG AAGTTGTT CTCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGTTKTT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:123844216-123844236 3.2e-06 8_[+5]_4 chr15:101874540-10187456 8.1e-06 7_[+5]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGTTKTT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAGTTKTT width=8 seqs=2 chr4:123844216-123844236 ( 9) AAGTTTTT 1 chr15:101874540-10187456 ( 8) AAGTTGTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGTTKTT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.6653 E= 2.5e+003 229 -765 -765 -765 229 -765 -765 -765 -765 -765 176 -765 -765 -765 -765 237 -765 -765 -765 237 -765 -765 76 137 -765 -765 -765 237 -765 -765 -765 237 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGTTKTT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.5e+003 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGTTKTT MEME-5 regular expression -------------------------------------------------------------------------------- AAGTT[GT]TT -------------------------------------------------------------------------------- Time 13.60 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:83781902-83781922 4.92e-03 11_[+2(1.26e-05)]_1 chr19:1068296-1068316 3.41e-02 20 chr18:54318864-54318884 5.21e-02 7_[+1(6.98e-05)]_5 chr19:49311197-49311217 1.15e-02 2_[+2(5.40e-05)]_10 chr22:47158800-47158820 3.82e-01 20 chr19:11513101-11513121 5.15e-02 2_[+1(6.98e-05)]_10 chr1:246859930-246859950 1.44e-02 20 chr15:101874540-10187456 6.38e-04 7_[+5(8.12e-06)]_5 chr12:48551249-48551269 7.28e-02 20 chr16:30392419-30392439 8.93e-03 8_[+1(1.22e-05)]_4 chr10:103815544-10381556 4.89e-01 20 chr4:8703492-8703512 1.54e-02 [+1(1.22e-05)]_12 chr18:55578239-55578259 2.20e-02 2_[+1(3.93e-05)]_10 chr1:202594011-202594031 6.45e-02 2_[+4(8.45e-05)]_10 chr20:633059-633079 4.63e-02 4_[+2(1.26e-05)]_8 chr2:61244763-61244783 7.38e-02 20 chr12:117566080-11756610 1.53e-01 20 chr18:22006534-22006554 6.57e-01 20 chr9:97845738-97845758 1.32e-01 20 chr19:35168186-35168206 1.82e-02 20 chr9:134378345-134378365 3.46e-01 20 chr19:17490188-17490208 3.05e-01 20 chr19:2328604-2328624 5.75e-02 6_[+2(5.40e-05)]_6 chr12:96252692-96252712 4.63e-01 20 chr3:37217881-37217901 9.42e-01 20 chr16:30198551-30198571 4.00e-02 11_[+2(2.04e-05)]_1 chr7:1015184-1015204 9.25e-01 20 chr20:49198739-49198759 6.00e-01 20 chr15:63413897-63413917 6.60e-01 20 chr1:8613167-8613187 5.01e-02 9_[+3(3.60e-05)]_3 chr6:31927108-31927128 9.02e-01 20 chr2:27603210-27603230 2.67e-01 20 chr16:30710529-30710549 5.11e-02 20 chr12:133527848-13352786 3.32e-02 6_[+3(1.58e-05)]_6 chr19:39616700-39616720 2.32e-01 20 chr17:58213153-58213173 7.49e-01 20 chr1:27675502-27675522 2.93e-02 6_[+2(2.04e-05)]_6 chr10:103348022-10334804 7.03e-01 20 chr21:30375091-30375111 8.49e-01 20 chr2:4727138-4727158 3.44e-01 20 chr18:77342098-77342118 4.69e-02 20 chr16:67700677-67700697 5.45e-01 20 chr19:633192-633212 3.27e-01 20 chr17:75446657-75446677 9.78e-01 20 chr1:206911883-206911903 3.56e-01 20 chr17:40318605-40318625 8.30e-01 20 chr4:668055-668075 7.69e-01 20 chr1:18458755-18458775 1.96e-02 6_[+2(6.22e-05)]_6 chr20:44486383-44486403 2.96e-03 9_[+2(2.04e-05)]_3 chr19:1905791-1905811 8.66e-01 20 chr19:10887703-10887723 8.52e-01 20 chr20:42087889-42087909 2.98e-02 11_[+2(8.31e-05)]_1 chr12:132027826-13202784 3.38e-02 20 chr1:11862842-11862862 6.89e-01 20 chr2:27994598-27994618 6.89e-01 20 chr4:84198507-84198527 3.39e-01 20 chr11:32605342-32605362 4.77e-01 20 chr1:26615093-26615113 5.08e-02 20 chr12:70637161-70637181 8.91e-01 20 chr11:71639504-71639524 4.09e-01 20 chr11:118868835-11886885 6.18e-02 20 chr20:32398890-32398910 9.47e-01 20 chr3:194024060-194024080 7.61e-01 20 chr3:12705704-12705724 9.22e-01 20 chr16:27214799-27214819 9.37e-01 20 chr3:39149123-39149143 9.45e-01 20 chr12:56401107-56401127 3.39e-01 20 chr2:219433476-219433496 6.06e-01 20 chr13:41837678-41837698 7.30e-01 20 chr11:415456-415476 6.43e-01 20 chr22:37260190-37260210 5.29e-01 20 chr21:46221736-46221756 9.29e-01 20 chr1:32860014-32860034 3.33e-01 20 chr1:171711246-171711266 5.37e-01 20 chr19:49713442-49713462 2.02e-02 4_[+2(1.26e-05)]_8 chr17:37027865-37027885 6.21e-01 20 chr9:36258465-36258485 9.93e-01 20 chr19:19745204-19745224 3.23e-03 11_[+1(2.06e-05)]_1 chr17:1371249-1371269 9.64e-01 20 chr8:21867711-21867731 1.13e-01 12_[+2(5.40e-05)] chr6:53534573-53534593 5.53e-03 20 chrX:1511462-1511482 4.99e-01 20 chr13:103046896-10304691 1.10e-02 11_[+1(1.22e-05)]_1 chr5:94206712-94206732 4.45e-01 20 chr15:31196009-31196029 5.91e-01 20 chr11:45939752-45939772 9.19e-01 20 chr5:176981622-176981642 9.89e-01 20 chr1:53480539-53480559 7.06e-04 3_[+4(1.37e-05)]_9 chrX:48455861-48455881 2.78e-01 20 chr1:213224543-213224563 8.68e-01 20 chr2:64246992-64247012 1.97e-01 20 chr3:125153761-125153781 4.06e-02 3_[+2(1.26e-05)]_9 chr10:73467362-73467382 2.99e-01 20 chr15:41408601-41408621 9.80e-01 20 chr7:144533120-144533140 9.93e-01 20 chr2:232826443-232826463 9.95e-01 20 chr16:47007613-47007633 3.48e-01 20 chr19:15543652-15543672 9.09e-01 20 chr11:111957588-11195760 3.12e-01 20 chr10:75541800-75541820 6.33e-01 20 chr9:138666270-138666290 5.05e-02 3_[+4(8.45e-05)]_9 chr12:53497957-53497977 6.89e-01 20 chr1:28415064-28415084 9.94e-01 20 chr5:1801529-1801549 9.72e-01 20 chr12:498809-498829 9.99e-04 1_[+1(3.93e-05)]_11 chr1:45452342-45452362 8.68e-01 20 chr2:26694896-26694916 3.91e-02 7_[+3(2.56e-05)]_5 chr4:1634667-1634687 4.84e-02 9_[+3(6.15e-05)]_3 chr2:109065612-109065632 9.75e-01 20 chr2:39103062-39103082 1.33e-01 20 chr14:75643336-75643356 9.51e-02 20 chr17:61920576-61920596 1.22e-01 20 chr7:100178473-100178493 4.85e-02 4_[+3(1.58e-05)]_8 chr4:57333734-57333754 8.52e-01 20 chr5:64920809-64920829 1.10e-01 20 chr18:72798633-72798653 8.88e-03 8_[+3(8.44e-05)]_4 chr2:203776408-203776428 2.60e-02 [+3(3.60e-05)]_12 chr11:118889067-11888908 9.71e-01 20 chr2:20365805-20365825 1.27e-02 6_[+3(1.58e-05)]_6 chr19:37064202-37064222 3.18e-02 8_[+1(5.22e-05)]_4 chr4:47916855-47916875 9.61e-01 20 chr3:49195721-49195741 4.73e-01 20 chr17:34842376-34842396 6.06e-01 20 chr12:113438430-11343845 4.84e-02 2_[+3(8.44e-05)]_10 chr19:14682879-14682899 5.59e-02 20 chr17:37769342-37769362 3.77e-01 20 chr2:209130820-209130840 9.39e-01 20 chr14:75593766-75593786 2.35e-01 20 chr19:50919434-50919454 2.57e-02 6_[+2(9.14e-05)]_6 chr16:11590877-11590897 1.56e-02 11_[+4(3.94e-05)]_1 chr20:20033128-20033148 9.54e-01 20 chr19:10197331-10197351 3.20e-02 10_[+1(2.06e-05)]_2 chr20:33103442-33103462 9.47e-01 20 chr7:158649152-158649172 6.79e-01 20 chr12:89919989-89920009 7.20e-01 20 chr3:52485759-52485779 1.83e-01 20 chr6:169326406-169326426 6.43e-01 20 chr20:48532263-48532283 7.26e-01 20 chr6:42185606-42185626 2.86e-01 20 chr2:70528440-70528460 1.45e-02 6_[+1(1.22e-05)]_6 chr16:70669430-70669450 1.45e-02 1_[+1(1.22e-05)]_11 chr1:1342693-1342713 9.18e-01 20 chr18:72922741-72922761 3.82e-01 20 chr16:2255451-2255471 7.82e-01 20 chr6:693137-693157 9.63e-01 20 chr10:1738177-1738197 6.10e-03 6_[+4(2.40e-05)]_6 chr9:74526538-74526558 2.00e-01 20 chr20:60962115-60962135 8.52e-01 20 chrX:74742913-74742933 9.47e-01 20 chr19:18335119-18335139 8.55e-01 20 chr20:16710608-16710628 6.50e-01 20 chr12:29944562-29944582 2.46e-01 20 chr3:183602674-183602694 1.54e-01 20 chr19:965286-965306 3.35e-01 20 chr1:109633314-109633334 9.88e-01 20 chr8:120845046-120845066 9.73e-01 20 chr3:119395965-119395985 7.44e-02 20 chr5:126309154-126309174 9.36e-01 20 chr9:140513123-140513143 3.95e-01 20 chr4:123844216-123844236 2.05e-03 8_[+5(3.20e-06)]_4 chr22:36725965-36725985 5.05e-01 20 chr8:145653958-145653978 8.93e-01 20 chr8:124053878-124053898 9.72e-01 20 chr16:30933927-30933947 8.64e-01 20 chr3:157827808-157827828 9.31e-01 20 chr11:46615635-46615655 9.02e-01 20 chr10:119806485-11980650 7.86e-01 20 chr20:30431266-30431286 1.14e-02 10_[+1(2.06e-05)]_2 chr20:54967654-54967674 2.76e-01 20 chr6:30524691-30524711 1.85e-01 20 chr12:113525978-11352599 6.31e-02 20 chr3:100119991-100120011 5.03e-01 20 chr17:1933406-1933426 9.61e-02 20 chr1:23991519-23991539 4.87e-02 20 chr1:1175321-1175341 5.95e-01 20 chr2:153573971-153573991 5.59e-01 20 chr9:126985391-126985411 4.07e-01 20 chr8:80942466-80942486 9.91e-01 20 chr1:162602750-162602770 2.13e-02 20 chr8:144689842-144689862 6.40e-02 4_[+3(8.44e-05)]_[+3(1.58e-05)] chr20:18118440-18118460 7.81e-01 20 chr22:35653425-35653445 9.64e-01 20 chr3:113465052-113465072 8.52e-01 20 chr7:98116209-98116229 2.98e-03 9_[+4(4.65e-05)]_3 chr8:105601564-105601584 1.87e-01 20 chr19:1935678-1935698 4.10e-01 20 chr20:62339226-62339246 8.39e-01 20 chr21:30446058-30446078 2.65e-01 20 chr14:31889918-31889938 9.03e-01 20 chr1:25877631-25877651 1.82e-01 20 chr4:3600433-3600453 8.15e-02 20 chr17:80709893-80709913 9.71e-01 20 chr1:178062802-178062822 9.35e-01 20 chr1:249185010-249185030 1.13e-01 4_[+3(9.08e-05)]_8 chr3:118959221-118959241 2.48e-02 1_[+1(2.06e-05)]_11 chr19:2236850-2236870 8.47e-01 20 chr7:102937835-102937855 1.74e-01 20 chr2:74699778-74699798 5.63e-02 11_[+2(5.40e-05)]_1 chr12:69080726-69080746 1.09e-02 20 chr1:36929990-36930010 7.50e-01 20 chr6:13615535-13615555 6.18e-01 20 chr3:124847846-124847866 2.56e-01 20 chr14:95623979-95623999 5.02e-01 20 chr20:62019337-62019357 2.08e-02 7_[+3(2.56e-05)]_5 chr9:19998326-19998346 1.14e-02 20 chr9:94474046-94474066 1.71e-02 10_[+4(8.45e-05)]_2 chr3:48481514-48481534 7.88e-01 20 chr1:33282983-33283003 8.79e-01 20 chr8:96037217-96037237 8.83e-01 20 chr17:55927549-55927569 5.05e-01 20 chr1:229923819-229923839 2.34e-02 4_[+4(2.40e-05)]_8 chr19:10363211-10363231 7.24e-01 20 chr7:157091807-157091827 1.56e-02 20 chr20:35918065-35918085 9.97e-01 20 chr16:58121060-58121080 1.04e-01 4_[+3(8.44e-05)]_8 chr7:99679353-99679373 4.66e-01 20 chr19:1205294-1205314 9.88e-04 1_[+4(5.55e-05)]_11 chr20:34287267-34287287 4.42e-01 20 chr7:25990826-25990846 9.72e-01 20 chr12:49961921-49961941 5.56e-01 20 chr1:226374424-226374444 1.42e-02 10_[+2(1.26e-05)]_2 chr8:142171197-142171217 3.05e-02 20 chr12:82752229-82752249 7.82e-02 20 chr2:200820445-200820465 8.05e-02 20 chr5:93954313-93954333 3.34e-01 20 chr6:96025690-96025710 9.15e-01 20 chr6:367713-367733 1.05e-02 12_[+3(1.58e-05)] chr16:23652702-23652722 9.33e-01 20 chr17:38137014-38137034 2.82e-01 20 chr3:15140676-15140696 9.24e-01 20 chr12:6665308-6665328 5.95e-02 6_[+1(3.93e-05)]_6 chr10:30287089-30287109 9.54e-02 7_[+3(6.15e-05)]_5 chr3:142720344-142720364 9.61e-01 20 chr16:86065046-86065066 4.34e-01 20 chr16:19729555-19729575 4.61e-01 20 chr14:105885730-10588575 6.94e-01 20 chr8:110552369-110552389 9.22e-01 20 chr9:136890530-136890550 5.60e-01 20 chr10:7860398-7860418 1.88e-01 20 chr2:152266332-152266352 5.22e-01 20 chr12:2113690-2113710 5.76e-01 20 chr7:123197901-123197921 8.84e-01 20 chr10:62580445-62580465 7.67e-01 20 chr21:27107394-27107414 8.33e-01 20 chr11:64765799-64765819 3.99e-01 20 chr19:42422988-42423008 9.98e-01 20 chr11:14541925-14541945 1.85e-02 20 chr16:12897839-12897859 8.45e-01 20 chr19:49015811-49015831 3.15e-02 9_[+3(6.15e-05)]_3 chr1:6761867-6761887 7.29e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n10.farnam.hpc.yale.internal ********************************************************************************