******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/NFYA.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr19:40728046-40728066 1.0000 20 chr16:82685565-82685585 1.0000 20 chr19:1041109-1041129 1.0000 20 chr5:96144108-96144128 1.0000 20 chr3:100211351-100211371 1.0000 20 chr19:46148958-46148978 1.0000 20 chr5:32313330-32313350 1.0000 20 chr4:175204424-175204444 1.0000 20 chr1:24740328-24740348 1.0000 20 chr12:124594469-12459448 1.0000 20 chr13:26795971-26795991 1.0000 20 chr19:2841392-2841412 1.0000 20 chr19:4342962-4342982 1.0000 20 chr3:119813861-119813881 1.0000 20 chr19:17377900-17377920 1.0000 20 chr11:13299064-13299084 1.0000 20 chr19:2945043-2945063 1.0000 20 chr11:107798902-10779892 1.0000 20 chr12:14927192-14927212 1.0000 20 chr19:12405714-12405734 1.0000 20 chr17:37321248-37321268 1.0000 20 chr14:68161594-68161614 1.0000 20 chr10:101190539-10119055 1.0000 20 chr12:122028268-12202828 1.0000 20 chr15:44487611-44487631 1.0000 20 chr14:23755495-23755515 1.0000 20 chr1:22755315-22755335 1.0000 20 chr19:19249346-19249366 1.0000 20 chr9:37465737-37465757 1.0000 20 chr14:75530768-75530788 1.0000 20 chr22:35696192-35696212 1.0000 20 chr12:6960537-6960557 1.0000 20 chr19:21182625-21182645 1.0000 20 chr19:3035701-3035721 1.0000 20 chr20:48951880-48951900 1.0000 20 chr1:150669778-150669798 1.0000 20 chr19:6372627-6372647 1.0000 20 chr17:2952325-2952345 1.0000 20 chr1:62902175-62902195 1.0000 20 chr8:145159284-145159304 1.0000 20 chr15:83478259-83478279 1.0000 20 chr14:20801482-20801502 1.0000 20 chr19:15947939-15947959 1.0000 20 chr6:167000435-167000455 1.0000 20 chr13:103451404-10345142 1.0000 20 chr2:183943499-183943519 1.0000 20 chr22:42342786-42342806 1.0000 20 chr19:41082730-41082750 1.0000 20 chr13:20532753-20532773 1.0000 20 chr19:38495263-38495283 1.0000 20 chr6:159495543-159495563 1.0000 20 chr14:94492623-94492643 1.0000 20 chr9:131940611-131940631 1.0000 20 chr16:57683101-57683121 1.0000 20 chr3:50605205-50605225 1.0000 20 chr19:17420224-17420244 1.0000 20 chr20:45985496-45985516 1.0000 20 chr16:30621749-30621769 1.0000 20 chr20:40247116-40247136 1.0000 20 chr19:37808625-37808645 1.0000 20 chr17:74667911-74667931 1.0000 20 chr19:50269723-50269743 1.0000 20 chr17:38574292-38574312 1.0000 20 chr1:150601729-150601749 1.0000 20 chr19:18133136-18133156 1.0000 20 chr16:4852972-4852992 1.0000 20 chr17:32527071-32527091 1.0000 20 chr11:62495474-62495494 1.0000 20 chr16:74729908-74729928 1.0000 20 chr16:70323514-70323534 1.0000 20 chr15:64673776-64673796 1.0000 20 chr9:73029330-73029350 1.0000 20 chr6:46097595-46097615 1.0000 20 chr19:19174436-19174456 1.0000 20 chr20:42718793-42718813 1.0000 20 chr17:73452648-73452668 1.0000 20 chr3:126423031-126423051 1.0000 20 chr11:129872876-12987289 1.0000 20 chr12:109535823-10953584 1.0000 20 chr6:27099737-27099757 1.0000 20 chr4:467969-467989 1.0000 20 chr6:32145979-32145999 1.0000 20 chr6:26199636-26199656 1.0000 20 chr1:197115840-197115860 1.0000 20 chr6:159527964-159527984 1.0000 20 chr1:160991019-160991039 1.0000 20 chr7:23053819-23053839 1.0000 20 chr6:26045503-26045523 1.0000 20 chr19:1133724-1133744 1.0000 20 chr1:44115667-44115687 1.0000 20 chr1:31231823-31231843 1.0000 20 chr1:153940252-153940272 1.0000 20 chr5:162864484-162864504 1.0000 20 chr21:40684410-40684430 1.0000 20 chr16:58663938-58663958 1.0000 20 chr1:85527944-85527964 1.0000 20 chrX:154444621-154444641 1.0000 20 chr19:3344343-3344363 1.0000 20 chr19:54641368-54641388 1.0000 20 chr2:62081789-62081809 1.0000 20 chr5:14145535-14145555 1.0000 20 chr11:67275752-67275772 1.0000 20 chr22:20004439-20004459 1.0000 20 chr16:2264966-2264986 1.0000 20 chr14:91527383-91527403 1.0000 20 chr19:20959076-20959096 1.0000 20 chr9:135905948-135905968 1.0000 20 chr17:58755151-58755171 1.0000 20 chr4:48782490-48782510 1.0000 20 chr20:44441155-44441175 1.0000 20 chr15:90118664-90118684 1.0000 20 chr6:80247227-80247247 1.0000 20 chr19:18303738-18303758 1.0000 20 chr6:31126265-31126285 1.0000 20 chr9:139780775-139780795 1.0000 20 chrX:46988625-46988645 1.0000 20 chr15:89631522-89631542 1.0000 20 chr15:75744162-75744182 1.0000 20 chr17:7307530-7307550 1.0000 20 chr10:102241439-10224145 1.0000 20 chr12:49076125-49076145 1.0000 20 chr2:232646071-232646091 1.0000 20 chr19:18315126-18315146 1.0000 20 chr13:20437861-20437881 1.0000 20 chr9:104295809-104295829 1.0000 20 chr2:73298554-73298574 1.0000 20 chr3:107241724-107241744 1.0000 20 chr11:119205077-11920509 1.0000 20 chr15:99395698-99395718 1.0000 20 chr14:78083280-78083300 1.0000 20 chr12:56211736-56211756 1.0000 20 chr2:201828482-201828502 1.0000 20 chr15:90895404-90895424 1.0000 20 chr16:3054023-3054043 1.0000 20 chr6:42897036-42897056 1.0000 20 chr16:16002074-16002094 1.0000 20 chr19:33166158-33166178 1.0000 20 chr12:8179346-8179366 1.0000 20 chr2:30934637-30934657 1.0000 20 chr9:130159135-130159155 1.0000 20 chr11:47789140-47789160 1.0000 20 chr17:4870723-4870743 1.0000 20 chr1:207996182-207996202 1.0000 20 chr1:153895610-153895630 1.0000 20 chr19:12662434-12662454 1.0000 20 chr15:43213102-43213122 1.0000 20 chr2:24270358-24270378 1.0000 20 chr17:80416502-80416522 1.0000 20 chr14:58765160-58765180 1.0000 20 chr15:75491185-75491205 1.0000 20 chr17:37778379-37778399 1.0000 20 chr10:101380323-10138034 1.0000 20 chr9:139743726-139743746 1.0000 20 chr1:149858357-149858377 1.0000 20 chr14:23938578-23938598 1.0000 20 chr1:10270472-10270492 1.0000 20 chr20:45323366-45323386 1.0000 20 chr19:51182807-51182827 1.0000 20 chr19:47551917-47551937 1.0000 20 chr2:27008668-27008688 1.0000 20 chr2:10262809-10262829 1.0000 20 chr13:73633008-73633028 1.0000 20 chr19:14228714-14228734 1.0000 20 chr11:66405978-66405998 1.0000 20 chr9:131843135-131843155 1.0000 20 chr15:40697848-40697868 1.0000 20 chr1:221915530-221915550 1.0000 20 chr12:510708-510728 1.0000 20 chrX:47415656-47415676 1.0000 20 chr11:4629568-4629588 1.0000 20 chr19:45873937-45873957 1.0000 20 chr14:106873683-10687370 1.0000 20 chr14:68286436-68286456 1.0000 20 chr8:30506115-30506135 1.0000 20 chr1:53168787-53168807 1.0000 20 chr6:153304234-153304254 1.0000 20 chr10:102790939-10279095 1.0000 20 chr7:100184097-100184117 1.0000 20 chr19:42901211-42901231 1.0000 20 chr13:107188087-10718810 1.0000 20 chr1:86965924-86965944 1.0000 20 chr5:137549057-137549077 1.0000 20 chr2:46771301-46771321 1.0000 20 chr1:28562560-28562580 1.0000 20 chr21:44772711-44772731 1.0000 20 chr22:40440657-40440677 1.0000 20 chr1:20988071-20988091 1.0000 20 chr17:17653454-17653474 1.0000 20 chrX:70585845-70585865 1.0000 20 chr6:82957516-82957536 1.0000 20 chr7:44887950-44887970 1.0000 20 chr5:33441006-33441026 1.0000 20 chr19:36193347-36193367 1.0000 20 chr14:21905439-21905459 1.0000 20 chr5:145583073-145583093 1.0000 20 chr20:40293408-40293428 1.0000 20 chr14:107147799-10714781 1.0000 20 chr1:227127821-227127841 1.0000 20 chr6:27100732-27100752 1.0000 20 chr6:147523644-147523664 1.0000 20 chr3:114866186-114866206 1.0000 20 chr11:94801928-94801948 1.0000 20 chr17:57232687-57232707 1.0000 20 chr22:38054397-38054417 1.0000 20 chr19:10362528-10362548 1.0000 20 chr17:47866558-47866578 1.0000 20 chr12:21654576-21654596 1.0000 20 chr3:4516761-4516781 1.0000 20 chr19:11849846-11849866 1.0000 20 chr14:24584425-24584445 1.0000 20 chr17:47270293-47270313 1.0000 20 chr11:124981559-12498157 1.0000 20 chr15:49103399-49103419 1.0000 20 chr12:51632963-51632983 1.0000 20 chr11:31531227-31531247 1.0000 20 chr17:26646056-26646076 1.0000 20 chr19:36248928-36248948 1.0000 20 chr3:42543931-42543951 1.0000 20 chr22:37172283-37172303 1.0000 20 chr3:179280620-179280640 1.0000 20 chr5:137667549-137667569 1.0000 20 chr3:149530927-149530947 1.0000 20 chr12:27676999-27677019 1.0000 20 chr19:58892651-58892671 1.0000 20 chr19:54663640-54663660 1.0000 20 chr12:54674408-54674428 1.0000 20 chr2:20251516-20251536 1.0000 20 chr3:25706474-25706494 1.0000 20 chr6:53213871-53213891 1.0000 20 chr7:30544486-30544506 1.0000 20 chr3:195163959-195163979 1.0000 20 chr9:34329427-34329447 1.0000 20 chr17:79650836-79650856 1.0000 20 chr11:22647425-22647445 1.0000 20 chr1:41174918-41174938 1.0000 20 chr1:154947017-154947037 1.0000 20 chr6:43142511-43142531 1.0000 20 chr20:44509746-44509766 1.0000 20 chr12:98909322-98909342 1.0000 20 chr1:54665767-54665787 1.0000 20 chr6:150067653-150067673 1.0000 20 chr17:46018847-46018867 1.0000 20 chr11:63953412-63953432 1.0000 20 chr17:39943130-39943150 1.0000 20 chr7:132937749-132937769 1.0000 20 chr20:44486102-44486122 1.0000 20 chr15:74890771-74890791 1.0000 20 chrX:48595678-48595698 1.0000 20 chr19:13906101-13906121 1.0000 20 chr1:167691154-167691174 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_NFYA/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/NFYA.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.214 C 0.29 G 0.283 T 0.213 Background letter frequencies (from file dataset with add-one prior applied): A 0.214 C 0.29 G 0.283 T 0.213 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CYRATTGG MEME-1 width = 8 sites = 52 llr = 351 E-value = 1.4e-021 ******************************************************************************** -------------------------------------------------------------------------------- Motif CYRATTGG MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::5a:13: pos.-specific C 872::2:: probability G ::3:117a matrix T 131:96:: bits 2.2 * 2.0 * 1.8 ** * 1.6 ** * Relative 1.3 ** * Entropy 1.1 ** ** * (9.7 bits) 0.9 ** ** ** 0.7 ** ** ** 0.4 ** ***** 0.2 ******** 0.0 -------- Multilevel CCAATTGG consensus TG CA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYRATTGG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:4629568-4629588 13 1.40e-05 GTACCCCTAG CCAATTGG chr11:62495474-62495494 6 1.40e-05 TTTTT CCAATTGG CGAAGCT chr22:20004439-20004459 6 4.28e-05 CGGCG CCGATTGG GCGGATG chr1:160991019-160991039 2 4.28e-05 T CCGATTGG TGTAAGGAAC chr3:50605205-50605225 9 4.28e-05 CCCGGCCT CCGATTGG CTGT chr7:30544486-30544506 5 6.70e-05 TCTC CTGATTGG CTGCCGGT chr2:20251516-20251536 4 6.70e-05 CTT CTGATTGG AAGAACTTG chr19:11849846-11849866 10 6.70e-05 CCCTCATCC CTGATTGG ATA chr14:68286436-68286456 12 6.70e-05 CTGCCGGCCT CTGATTGG A chr14:78083280-78083300 13 6.70e-05 GGCCTGGCAC CTGATTGG chr14:20801482-20801502 1 6.70e-05 . CTGATTGG CTAATGAGTT chr19:2945043-2945063 3 6.70e-05 CC CTGATTGG AGAATTCTCC chr20:40293408-40293428 8 9.37e-05 aaatgct cccattgg tcaga chr12:510708-510728 3 9.37e-05 TT CCCATTGG TGCGCATTCC chr20:40247116-40247136 6 9.37e-05 ACAGA CCCATTGG TCATCCC chr5:96144108-96144128 4 9.37e-05 ACG CCCATTGG ACTCGCTGG chr19:45873937-45873957 8 1.13e-04 GGCAGAG CCAATCGG GATAC chr17:73452648-73452668 4 1.13e-04 TGA CCAATCGG TGGCCTGAA chr6:46097595-46097615 2 1.13e-04 A CCAATCGG AAAGAAAGTT chr16:4852972-4852992 12 1.51e-04 CTCGCGCTCA CTCATTGG C chr15:74890771-74890791 6 1.94e-04 CAGAG CCAATGGG AGCGAGG chr13:20532753-20532773 7 1.94e-04 TCGGAG CCAATGGG CGTGCC chr3:126423031-126423051 2 2.69e-04 G CCAATAGG ACGTGGCTTT chr19:18315126-18315146 10 2.83e-04 GCGAAGTAG CCAATCAG AGA chr17:38574292-38574312 12 2.83e-04 TTTGAATAAA CCAATCAG G chr22:42342786-42342806 9 2.83e-04 GGAACTCG CCAATCAG AAGC chr19:19249346-19249366 1 2.83e-04 . CCAATCAG TGTGTCTTGA chr19:1041109-1041129 6 2.83e-04 GGCAG CCAATCAG ATGCGAG chr16:82685565-82685585 6 2.83e-04 GCCAT CCAATCAG AACAAGT chr19:4342962-4342982 2 3.11e-04 A TCGATTGG TTGAGGGTGA chr17:47270293-47270313 10 3.93e-04 GTCATGCTT CTTATTGG CTA chr11:124981559-12498157 13 4.29e-04 TTAAGATTCA CTAATCAG chr6:153304234-153304254 6 4.72e-04 GCGGT CCAATGAG ACGCGTC chr8:30506115-30506135 1 4.72e-04 . ccaatgag ctgtgagagg chr1:149858357-149858377 10 4.72e-04 ACTCTTGAC TTGATTGG CCG chr14:58765160-58765180 4 4.72e-04 CAT CCAATGAG GACGGCAGG chr19:3344343-3344363 10 4.72e-04 ATGTCCTGG CCAATGAG AAT chr19:12405714-12405734 10 4.72e-04 CCCACGACT TTGATTGG GTA chr1:154947017-154947037 6 5.60e-04 GCCCT CCAATAAG GATCCGA chr5:33441006-33441026 12 5.60e-04 TCCCCCGTTA TCCATTGG C chr19:6372627-6372647 11 5.60e-04 GAGGTGGCGC CCAATAAG CT chr13:103451404-10345142 8 6.85e-04 GCCTTCT CCAAGTGG ATGGC chr16:30621749-30621769 11 7.70e-04 AATACGCGCG TTCATTGG AC chr20:44509746-44509766 1 8.43e-04 . ACGATTGG TCCGTGGTGC chrX:70585845-70585865 11 8.43e-04 AGCCACTGCT CTAATTCG GT chr13:73633008-73633028 7 1.04e-03 TCCCTG CTCATAGG CTGGCC chr14:23755495-23755515 4 1.04e-03 TCA TCTATTGG ATGCGTGGG chr1:153895610-153895630 7 1.09e-03 GAAGTG ATGATTGG CGTGCT chr1:53168787-53168807 13 1.31e-03 CCCGATCTTT CTGAGTGG chr3:149530927-149530947 10 1.49e-03 ACCATGTTG CCCAGTGG GTT chr19:10362528-10362548 9 1.49e-03 ACTGCCCA CTTATGGG CGGG chr12:109535823-10953584 9 1.49e-03 CCATGGCG CCAATCCG CGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYRATTGG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:4629568-4629588 1.4e-05 12_[+1] chr11:62495474-62495494 1.4e-05 5_[+1]_7 chr22:20004439-20004459 4.3e-05 5_[+1]_7 chr1:160991019-160991039 4.3e-05 1_[+1]_11 chr3:50605205-50605225 4.3e-05 8_[+1]_4 chr7:30544486-30544506 6.7e-05 4_[+1]_8 chr2:20251516-20251536 6.7e-05 3_[+1]_9 chr19:11849846-11849866 6.7e-05 9_[+1]_3 chr14:68286436-68286456 6.7e-05 11_[+1]_1 chr14:78083280-78083300 6.7e-05 12_[+1] chr14:20801482-20801502 6.7e-05 [+1]_12 chr19:2945043-2945063 6.7e-05 2_[+1]_10 chr20:40293408-40293428 9.4e-05 7_[+1]_5 chr12:510708-510728 9.4e-05 2_[+1]_10 chr20:40247116-40247136 9.4e-05 5_[+1]_7 chr5:96144108-96144128 9.4e-05 3_[+1]_9 chr19:45873937-45873957 0.00011 7_[+1]_5 chr17:73452648-73452668 0.00011 3_[+1]_9 chr6:46097595-46097615 0.00011 1_[+1]_11 chr16:4852972-4852992 0.00015 11_[+1]_1 chr15:74890771-74890791 0.00019 5_[+1]_7 chr13:20532753-20532773 0.00019 6_[+1]_6 chr3:126423031-126423051 0.00027 1_[+1]_11 chr19:18315126-18315146 0.00028 9_[+1]_3 chr17:38574292-38574312 0.00028 11_[+1]_1 chr22:42342786-42342806 0.00028 8_[+1]_4 chr19:19249346-19249366 0.00028 [+1]_12 chr19:1041109-1041129 0.00028 5_[+1]_7 chr16:82685565-82685585 0.00028 5_[+1]_7 chr19:4342962-4342982 0.00031 1_[+1]_11 chr17:47270293-47270313 0.00039 9_[+1]_3 chr11:124981559-12498157 0.00043 12_[+1] chr6:153304234-153304254 0.00047 5_[+1]_7 chr8:30506115-30506135 0.00047 [+1]_12 chr1:149858357-149858377 0.00047 9_[+1]_3 chr14:58765160-58765180 0.00047 3_[+1]_9 chr19:3344343-3344363 0.00047 9_[+1]_3 chr19:12405714-12405734 0.00047 9_[+1]_3 chr1:154947017-154947037 0.00056 5_[+1]_7 chr5:33441006-33441026 0.00056 11_[+1]_1 chr19:6372627-6372647 0.00056 10_[+1]_2 chr13:103451404-10345142 0.00069 7_[+1]_5 chr16:30621749-30621769 0.00077 10_[+1]_2 chr20:44509746-44509766 0.00084 [+1]_12 chrX:70585845-70585865 0.00084 10_[+1]_2 chr13:73633008-73633028 0.001 6_[+1]_6 chr14:23755495-23755515 0.001 3_[+1]_9 chr1:153895610-153895630 0.0011 6_[+1]_6 chr1:53168787-53168807 0.0013 12_[+1] chr3:149530927-149530947 0.0015 9_[+1]_3 chr19:10362528-10362548 0.0015 8_[+1]_4 chr12:109535823-10953584 0.0015 8_[+1]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYRATTGG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CYRATTGG width=8 seqs=52 chr11:4629568-4629588 ( 13) CCAATTGG 1 chr11:62495474-62495494 ( 6) CCAATTGG 1 chr22:20004439-20004459 ( 6) CCGATTGG 1 chr1:160991019-160991039 ( 2) CCGATTGG 1 chr3:50605205-50605225 ( 9) CCGATTGG 1 chr7:30544486-30544506 ( 5) CTGATTGG 1 chr2:20251516-20251536 ( 4) CTGATTGG 1 chr19:11849846-11849866 ( 10) CTGATTGG 1 chr14:68286436-68286456 ( 12) CTGATTGG 1 chr14:78083280-78083300 ( 13) CTGATTGG 1 chr14:20801482-20801502 ( 1) CTGATTGG 1 chr19:2945043-2945063 ( 3) CTGATTGG 1 chr20:40293408-40293428 ( 8) CCCATTGG 1 chr12:510708-510728 ( 3) CCCATTGG 1 chr20:40247116-40247136 ( 6) CCCATTGG 1 chr5:96144108-96144128 ( 4) CCCATTGG 1 chr19:45873937-45873957 ( 8) CCAATCGG 1 chr17:73452648-73452668 ( 4) CCAATCGG 1 chr6:46097595-46097615 ( 2) CCAATCGG 1 chr16:4852972-4852992 ( 12) CTCATTGG 1 chr15:74890771-74890791 ( 6) CCAATGGG 1 chr13:20532753-20532773 ( 7) CCAATGGG 1 chr3:126423031-126423051 ( 2) CCAATAGG 1 chr19:18315126-18315146 ( 10) CCAATCAG 1 chr17:38574292-38574312 ( 12) CCAATCAG 1 chr22:42342786-42342806 ( 9) CCAATCAG 1 chr19:19249346-19249366 ( 1) CCAATCAG 1 chr19:1041109-1041129 ( 6) CCAATCAG 1 chr16:82685565-82685585 ( 6) CCAATCAG 1 chr19:4342962-4342982 ( 2) TCGATTGG 1 chr17:47270293-47270313 ( 10) CTTATTGG 1 chr11:124981559-12498157 ( 13) CTAATCAG 1 chr6:153304234-153304254 ( 6) CCAATGAG 1 chr8:30506115-30506135 ( 1) CCAATGAG 1 chr1:149858357-149858377 ( 10) TTGATTGG 1 chr14:58765160-58765180 ( 4) CCAATGAG 1 chr19:3344343-3344363 ( 10) CCAATGAG 1 chr19:12405714-12405734 ( 10) TTGATTGG 1 chr1:154947017-154947037 ( 6) CCAATAAG 1 chr5:33441006-33441026 ( 12) TCCATTGG 1 chr19:6372627-6372647 ( 11) CCAATAAG 1 chr13:103451404-10345142 ( 8) CCAAGTGG 1 chr16:30621749-30621769 ( 11) TTCATTGG 1 chr20:44509746-44509766 ( 1) ACGATTGG 1 chrX:70585845-70585865 ( 11) CTAATTCG 1 chr13:73633008-73633028 ( 7) CTCATAGG 1 chr14:23755495-23755515 ( 4) TCTATTGG 1 chr1:153895610-153895630 ( 7) ATGATTGG 1 chr1:53168787-53168807 ( 13) CTGAGTGG 1 chr3:149530927-149530947 ( 10) CCCAGTGG 1 chr19:10362528-10362548 ( 9) CTTATGGG 1 chr12:109535823-10953584 ( 9) CCAATCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYRATTGG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.11984 E= 1.4e-021 -247 155 -1234 -89 -1234 117 -1234 70 111 -74 12 -189 223 -1234 -1234 -1234 -1234 -1234 -229 214 -147 -45 -107 143 23 -291 133 -1234 -1234 -1234 182 -1234 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYRATTGG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 52 E= 1.4e-021 0.038462 0.846154 0.000000 0.115385 0.000000 0.653846 0.000000 0.346154 0.461538 0.173077 0.307692 0.057692 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.057692 0.942308 0.076923 0.211538 0.134615 0.576923 0.250000 0.038462 0.711538 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYRATTGG MEME-1 regular expression -------------------------------------------------------------------------------- C[CT][AG]AT[TC][GA]G -------------------------------------------------------------------------------- Time 1.87 secs. ******************************************************************************** ******************************************************************************** MOTIF CRGCCAAT MEME-2 width = 8 sites = 16 llr = 134 E-value = 7.9e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CRGCCAAT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :53::9a: pos.-specific C 61:aa::: probability G 248::::: matrix T 3::::1:a bits 2.2 ** 2.0 ** 1.8 ***** 1.6 ***** Relative 1.3 ***** Entropy 1.1 ****** (12.1 bits) 0.9 ****** 0.7 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAGCCAAT consensus TGA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRGCCAAT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:21654576-21654596 13 1.44e-05 TCGGTCCGTT CAGCCAAT chr11:47789140-47789160 3 1.44e-05 TC CAGCCAAT AGTGCGGTAG chr19:1133724-1133744 6 1.44e-05 CCTAG CAGCCAAT CACAGCC chr6:26045503-26045523 13 1.44e-05 GGTCACTCTT CAGCCAAT chr1:207996182-207996202 12 6.89e-05 AGCCCTCCCC TGGCCAAT G chr19:17420224-17420244 12 6.89e-05 GGAGGCGTGG CAACCAAT G chr6:167000435-167000455 10 6.89e-05 gactagccc tggccaat gga chr1:22755315-22755335 11 6.89e-05 gactgagttc tggccaat ag chr5:32313330-32313350 12 6.89e-05 ATGTTTCCTC CAACCAAT C chr19:36193347-36193367 12 1.24e-04 ACGAGCCTTA GGGCCAAT C chr16:16002074-16002094 13 1.24e-04 acactcagaa gggccaat chr2:73298554-73298574 11 1.35e-04 CCCGCCCCGT TGACCAAT GG chr15:90895404-90895424 4 1.49e-04 TAT CAGCCTAT GGACAGAGA chr19:41082730-41082750 6 1.49e-04 ATGAG CAGCCTAT GGAGGCG chr12:98909322-98909342 11 2.12e-04 CTCCCGTCGC CCGCCAAT GG chr15:75491185-75491205 13 2.12e-04 ttgtgggagg ggaccaat -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRGCCAAT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:21654576-21654596 1.4e-05 12_[+2] chr11:47789140-47789160 1.4e-05 2_[+2]_10 chr19:1133724-1133744 1.4e-05 5_[+2]_7 chr6:26045503-26045523 1.4e-05 12_[+2] chr1:207996182-207996202 6.9e-05 11_[+2]_1 chr19:17420224-17420244 6.9e-05 11_[+2]_1 chr6:167000435-167000455 6.9e-05 9_[+2]_3 chr1:22755315-22755335 6.9e-05 10_[+2]_2 chr5:32313330-32313350 6.9e-05 11_[+2]_1 chr19:36193347-36193367 0.00012 11_[+2]_1 chr16:16002074-16002094 0.00012 12_[+2] chr2:73298554-73298574 0.00013 10_[+2]_2 chr15:90895404-90895424 0.00015 3_[+2]_9 chr19:41082730-41082750 0.00015 5_[+2]_7 chr12:98909322-98909342 0.00021 10_[+2]_2 chr15:75491185-75491205 0.00021 12_[+2] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRGCCAAT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CRGCCAAT width=8 seqs=16 chr12:21654576-21654596 ( 13) CAGCCAAT 1 chr11:47789140-47789160 ( 3) CAGCCAAT 1 chr19:1133724-1133744 ( 6) CAGCCAAT 1 chr6:26045503-26045523 ( 13) CAGCCAAT 1 chr1:207996182-207996202 ( 12) TGGCCAAT 1 chr19:17420224-17420244 ( 12) CAACCAAT 1 chr6:167000435-167000455 ( 10) TGGCCAAT 1 chr1:22755315-22755335 ( 11) TGGCCAAT 1 chr5:32313330-32313350 ( 12) CAACCAAT 1 chr19:36193347-36193367 ( 12) GGGCCAAT 1 chr16:16002074-16002094 ( 13) GGGCCAAT 1 chr2:73298554-73298574 ( 11) TGACCAAT 1 chr15:90895404-90895424 ( 4) CAGCCTAT 1 chr19:41082730-41082750 ( 6) CAGCCTAT 1 chr12:98909322-98909342 ( 11) CCGCCAAT 1 chr15:75491185-75491205 ( 13) GGACCAAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRGCCAAT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.98531 E= 7.9e-002 -1064 96 -59 23 122 -221 63 -1064 23 -1064 140 -1064 -1064 179 -1064 -1064 -1064 179 -1064 -1064 203 -1064 -1064 -77 222 -1064 -1064 -1064 -1064 -1064 -1064 223 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRGCCAAT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 7.9e-002 0.000000 0.562500 0.187500 0.250000 0.500000 0.062500 0.437500 0.000000 0.250000 0.000000 0.750000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.875000 0.000000 0.000000 0.125000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRGCCAAT MEME-2 regular expression -------------------------------------------------------------------------------- [CT][AG][GA]CCAAT -------------------------------------------------------------------------------- Time 3.17 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTCCTGA MEME-3 width = 8 sites = 9 llr = 82 E-value = 4.7e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTCCTGA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :1:::::8 pos.-specific C :1:a9::1 probability G :81:::a1 matrix T a:9:1a:: bits 2.2 * * 2.0 * * 1.8 * ** ** 1.6 * ** ** Relative 1.3 * ***** Entropy 1.1 * ****** (13.1 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGTCCTGA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTCCTGA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:94801928-94801948 5 1.39e-05 GCCT TGTCCTGA AGAACAAA chr14:107147799-10714781 9 1.39e-05 CCCCCTGC TGTCCTGA GTGC chr14:106873683-10687370 6 1.39e-05 CCTAG TGTCCTGA GCGCCCC chr1:54665767-54665787 13 2.45e-05 AAGACAAGAA TATCCTGA chr19:19249346-19249366 11 3.47e-05 CCAATCAGTG TGTCTTGA GC chr9:131940611-131940631 12 4.90e-05 GCTCTGAGAG TCTCCTGA G chr19:3344343-3344363 2 8.63e-05 A TGTCCTGG CCAATGAGAA chr1:153940252-153940272 7 8.63e-05 GCTCGA TGTCCTGC CCCTCC chr17:73452648-73452668 12 1.05e-04 GACCAATCGG TGGCCTGA A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTCCTGA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:94801928-94801948 1.4e-05 4_[+3]_8 chr14:107147799-10714781 1.4e-05 8_[+3]_4 chr14:106873683-10687370 1.4e-05 5_[+3]_7 chr1:54665767-54665787 2.4e-05 12_[+3] chr19:19249346-19249366 3.5e-05 10_[+3]_2 chr9:131940611-131940631 4.9e-05 11_[+3]_1 chr19:3344343-3344363 8.6e-05 1_[+3]_11 chr1:153940252-153940272 8.6e-05 6_[+3]_6 chr17:73452648-73452668 0.0001 11_[+3]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTCCTGA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTCCTGA width=8 seqs=9 chr11:94801928-94801948 ( 5) TGTCCTGA 1 chr14:107147799-10714781 ( 9) TGTCCTGA 1 chr14:106873683-10687370 ( 6) TGTCCTGA 1 chr1:54665767-54665787 ( 13) TATCCTGA 1 chr19:19249346-19249366 ( 11) TGTCTTGA 1 chr9:131940611-131940631 ( 12) TCTCCTGA 1 chr19:3344343-3344363 ( 2) TGTCCTGG 1 chr1:153940252-153940272 ( 7) TGTCCTGC 1 chr17:73452648-73452668 ( 12) TGGCCTGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTCCTGA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.34207 E= 4.7e+002 -982 -982 -982 223 -94 -138 146 -982 -982 -982 -135 206 -982 179 -982 -982 -982 162 -982 -94 -982 -982 -982 223 -982 -982 182 -982 186 -138 -135 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTCCTGA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 4.7e+002 0.000000 0.000000 0.000000 1.000000 0.111111 0.111111 0.777778 0.000000 0.000000 0.000000 0.111111 0.888889 0.000000 1.000000 0.000000 0.000000 0.000000 0.888889 0.000000 0.111111 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.777778 0.111111 0.111111 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTCCTGA MEME-3 regular expression -------------------------------------------------------------------------------- TGTCCTGA -------------------------------------------------------------------------------- Time 6.38 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCCTCTR MEME-4 width = 8 sites = 7 llr = 63 E-value = 1.2e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCCTCTR MEME-4 Description -------------------------------------------------------------------------------- Simplified A 1::::::3 pos.-specific C 9:aa:a:1 probability G :a:::::4 matrix T ::::a:a1 bits 2.2 * * 2.0 * * 1.8 ****** 1.6 ****** Relative 1.3 ******* Entropy 1.1 ******* (13.0 bits) 0.9 ******* 0.7 ******* 0.4 ******* 0.2 ******** 0.0 -------- Multilevel CGCCTCTG consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCTCTR MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:132937749-132937769 1 2.57e-05 . CGCCTCTG GAATTCTCTT chr17:39943130-39943150 1 2.57e-05 . CGCCTCTG TTTATCCGCT chr5:137667549-137667569 6 4.51e-05 CCGCT CGCCTCTA AGCTGCG chr4:48782490-48782510 1 4.51e-05 . CGCCTCTA ACGTTGCTTT chr19:54663640-54663660 5 6.45e-05 CAAC CGCCTCTT GTCACAGA chr11:119205077-11920509 11 9.08e-05 TTTAATCTGT CGCCTCTC CT chr2:46771301-46771321 2 1.10e-04 C AGCCTCTG TCTGGTCCCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCTCTR MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:132937749-132937769 2.6e-05 [+4]_12 chr17:39943130-39943150 2.6e-05 [+4]_12 chr5:137667549-137667569 4.5e-05 5_[+4]_7 chr4:48782490-48782510 4.5e-05 [+4]_12 chr19:54663640-54663660 6.4e-05 4_[+4]_8 chr11:119205077-11920509 9.1e-05 10_[+4]_2 chr2:46771301-46771321 0.00011 1_[+4]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCTCTR MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCCTCTR width=8 seqs=7 chr7:132937749-132937769 ( 1) CGCCTCTG 1 chr17:39943130-39943150 ( 1) CGCCTCTG 1 chr5:137667549-137667569 ( 6) CGCCTCTA 1 chr4:48782490-48782510 ( 1) CGCCTCTA 1 chr19:54663640-54663660 ( 5) CGCCTCTT 1 chr11:119205077-11920509 ( 11) CGCCTCTC 1 chr2:46771301-46771321 ( 2) AGCCTCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCTCTR MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.69928 E= 1.2e+004 -58 156 -945 -945 -945 -945 182 -945 -945 179 -945 -945 -945 179 -945 -945 -945 -945 -945 223 -945 179 -945 -945 -945 -945 -945 223 42 -102 60 -58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCTCTR MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.2e+004 0.142857 0.857143 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.285714 0.142857 0.428571 0.142857 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCTCTR MEME-4 regular expression -------------------------------------------------------------------------------- CGCCTCT[GA] -------------------------------------------------------------------------------- Time 9.40 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAATATC MEME-5 width = 8 sites = 2 llr = 24 E-value = 1.4e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAATATC MEME-5 Description -------------------------------------------------------------------------------- Simplified A aaaa:a:: pos.-specific C :::::::a probability G :::::::: matrix T ::::a:a: bits 2.2 ******* 2.0 ******* 1.8 ******** 1.6 ******** Relative 1.3 ******** Entropy 1.1 ******** (17.4 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAATATC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAATATC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:44887950-44887970 1 5.91e-06 . AAAATATC GCCCGCGAGC chr5:137549057-137549077 7 5.91e-06 GCACCA AAAATATC TGCCTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAATATC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:44887950-44887970 5.9e-06 [+5]_12 chr5:137549057-137549077 5.9e-06 6_[+5]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAATATC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAATATC width=8 seqs=2 chr7:44887950-44887970 ( 1) AAAATATC 1 chr5:137549057-137549077 ( 7) AAAATATC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAATATC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.6653 E= 1.4e+004 222 -765 -765 -765 222 -765 -765 -765 222 -765 -765 -765 222 -765 -765 -765 -765 -765 -765 222 222 -765 -765 -765 -765 -765 -765 222 -765 178 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAATATC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.4e+004 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAATATC MEME-5 regular expression -------------------------------------------------------------------------------- AAAATATC -------------------------------------------------------------------------------- Time 10.29 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:40728046-40728066 6.07e-01 20 chr16:82685565-82685585 9.89e-03 20 chr19:1041109-1041129 2.72e-04 2_[+2(1.44e-05)]_10 chr5:96144108-96144128 1.11e-02 3_[+1(9.37e-05)]_9 chr3:100211351-100211371 9.66e-01 20 chr19:46148958-46148978 9.68e-01 20 chr5:32313330-32313350 9.27e-03 11_[+2(6.89e-05)]_1 chr4:175204424-175204444 3.53e-01 20 chr1:24740328-24740348 9.00e-01 20 chr12:124594469-12459448 6.50e-01 20 chr13:26795971-26795991 9.78e-01 20 chr19:2841392-2841412 9.12e-01 20 chr19:4342962-4342982 1.23e-01 20 chr3:119813861-119813881 7.14e-01 20 chr19:17377900-17377920 3.70e-01 20 chr11:13299064-13299084 7.38e-01 20 chr19:2945043-2945063 1.68e-02 2_[+1(6.70e-05)]_10 chr11:107798902-10779892 8.38e-01 20 chr12:14927192-14927212 9.91e-01 20 chr19:12405714-12405734 3.63e-02 20 chr17:37321248-37321268 2.80e-01 20 chr14:68161594-68161614 2.00e-01 20 chr10:101190539-10119055 2.20e-01 20 chr12:122028268-12202828 8.85e-01 20 chr15:44487611-44487631 3.96e-01 20 chr14:23755495-23755515 1.86e-02 20 chr1:22755315-22755335 3.08e-02 10_[+2(6.89e-05)]_2 chr19:19249346-19249366 4.08e-04 10_[+3(3.47e-05)]_2 chr9:37465737-37465757 2.88e-01 20 chr14:75530768-75530788 6.89e-01 20 chr22:35696192-35696212 9.83e-01 20 chr12:6960537-6960557 8.08e-01 20 chr19:21182625-21182645 8.26e-01 20 chr19:3035701-3035721 5.54e-01 20 chr20:48951880-48951900 3.68e-01 20 chr1:150669778-150669798 8.81e-01 20 chr19:6372627-6372647 1.57e-02 20 chr17:2952325-2952345 9.90e-01 20 chr1:62902175-62902195 4.86e-01 20 chr8:145159284-145159304 9.79e-01 20 chr15:83478259-83478279 1.84e-01 20 chr14:20801482-20801502 7.42e-03 [+1(6.70e-05)]_12 chr19:15947939-15947959 3.75e-01 20 chr6:167000435-167000455 1.00e-02 9_[+2(6.89e-05)]_3 chr13:103451404-10345142 1.30e-01 20 chr2:183943499-183943519 3.18e-01 20 chr22:42342786-42342806 2.79e-03 20 chr19:41082730-41082750 2.64e-03 20 chr13:20532753-20532773 6.88e-04 3_[+2(8.30e-05)]_9 chr19:38495263-38495283 2.08e-02 20 chr6:159495543-159495563 5.14e-01 20 chr14:94492623-94492643 4.51e-01 20 chr9:131940611-131940631 9.55e-03 11_[+3(4.90e-05)]_1 chr16:57683101-57683121 5.50e-01 20 chr3:50605205-50605225 6.55e-03 8_[+1(4.28e-05)]_4 chr19:17420224-17420244 4.07e-02 11_[+2(6.89e-05)]_1 chr20:45985496-45985516 4.95e-01 20 chr16:30621749-30621769 2.61e-01 20 chr20:40247116-40247136 4.64e-02 5_[+1(9.37e-05)]_7 chr19:37808625-37808645 3.43e-01 20 chr17:74667911-74667931 3.10e-01 20 chr19:50269723-50269743 2.66e-01 20 chr17:38574292-38574312 7.65e-03 20 chr1:150601729-150601749 1.24e-01 20 chr19:18133136-18133156 9.85e-01 20 chr16:4852972-4852992 1.40e-01 20 chr17:32527071-32527091 1.18e-02 20 chr11:62495474-62495494 1.17e-02 5_[+1(1.40e-05)]_7 chr16:74729908-74729928 8.62e-01 20 chr16:70323514-70323534 2.44e-01 20 chr15:64673776-64673796 2.25e-01 20 chr9:73029330-73029350 7.28e-01 20 chr6:46097595-46097615 1.18e-01 20 chr19:19174436-19174456 8.30e-01 20 chr20:42718793-42718813 3.58e-01 20 chr17:73452648-73452668 8.46e-06 20 chr3:126423031-126423051 2.43e-02 20 chr11:129872876-12987289 1.10e-01 20 chr12:109535823-10953584 1.20e-02 20 chr6:27099737-27099757 6.25e-01 20 chr4:467969-467989 2.54e-01 20 chr6:32145979-32145999 1.72e-01 20 chr6:26199636-26199656 9.91e-01 20 chr1:197115840-197115860 7.91e-01 20 chr6:159527964-159527984 4.48e-02 20 chr1:160991019-160991039 6.22e-02 1_[+1(4.28e-05)]_11 chr7:23053819-23053839 7.44e-01 20 chr6:26045503-26045523 6.90e-03 12_[+2(1.44e-05)] chr19:1133724-1133744 3.41e-03 5_[+2(1.44e-05)]_7 chr1:44115667-44115687 8.32e-01 20 chr1:31231823-31231843 3.20e-01 20 chr1:153940252-153940272 3.44e-02 6_[+3(8.63e-05)]_6 chr5:162864484-162864504 9.14e-01 20 chr21:40684410-40684430 9.84e-01 20 chr16:58663938-58663958 4.08e-01 20 chr1:85527944-85527964 2.31e-01 20 chrX:154444621-154444641 8.29e-01 20 chr19:3344343-3344363 1.67e-05 6_[+2(6.89e-05)]_6 chr19:54641368-54641388 9.59e-01 20 chr2:62081789-62081809 6.59e-01 20 chr5:14145535-14145555 4.35e-01 20 chr11:67275752-67275772 2.72e-01 20 chr22:20004439-20004459 2.86e-03 5_[+1(4.28e-05)]_7 chr16:2264966-2264986 9.61e-01 20 chr14:91527383-91527403 6.44e-01 20 chr19:20959076-20959096 8.73e-01 20 chr9:135905948-135905968 8.49e-01 20 chr17:58755151-58755171 6.16e-01 20 chr4:48782490-48782510 3.96e-02 [+4(4.51e-05)]_12 chr20:44441155-44441175 4.75e-01 20 chr15:90118664-90118684 1.04e-01 20 chr6:80247227-80247247 1.45e-01 20 chr19:18303738-18303758 9.91e-01 20 chr6:31126265-31126285 9.97e-01 20 chr9:139780775-139780795 9.00e-01 20 chrX:46988625-46988645 1.66e-01 20 chr15:89631522-89631542 5.77e-02 20 chr15:75744162-75744182 2.13e-01 20 chr17:7307530-7307550 5.47e-02 20 chr10:102241439-10224145 8.93e-01 20 chr12:49076125-49076145 1.58e-01 20 chr2:232646071-232646091 9.33e-01 20 chr19:18315126-18315146 3.63e-04 6_[+2(4.40e-05)]_6 chr13:20437861-20437881 2.89e-01 20 chr9:104295809-104295829 8.08e-01 20 chr2:73298554-73298574 3.79e-02 20 chr3:107241724-107241744 7.65e-01 20 chr11:119205077-11920509 2.68e-03 10_[+4(9.08e-05)]_2 chr15:99395698-99395718 3.99e-01 20 chr14:78083280-78083300 9.97e-03 12_[+1(6.70e-05)] chr12:56211736-56211756 3.96e-01 20 chr2:201828482-201828502 3.19e-01 20 chr15:90895404-90895424 2.36e-03 20 chr16:3054023-3054043 5.95e-01 20 chr6:42897036-42897056 3.09e-02 20 chr16:16002074-16002094 2.79e-02 20 chr19:33166158-33166178 9.41e-01 20 chr12:8179346-8179366 4.42e-01 20 chr2:30934637-30934657 5.76e-01 20 chr9:130159135-130159155 5.29e-01 20 chr11:47789140-47789160 3.46e-03 2_[+2(1.44e-05)]_10 chr17:4870723-4870743 9.43e-01 20 chr1:207996182-207996202 5.56e-03 11_[+2(6.89e-05)]_1 chr1:153895610-153895630 9.05e-02 20 chr19:12662434-12662454 9.74e-01 20 chr15:43213102-43213122 3.40e-01 20 chr2:24270358-24270378 3.98e-01 20 chr17:80416502-80416522 3.11e-01 20 chr14:58765160-58765180 1.64e-02 20 chr15:75491185-75491205 2.33e-01 20 chr17:37778379-37778399 1.07e-01 20 chr10:101380323-10138034 6.29e-01 20 chr9:139743726-139743746 3.31e-01 20 chr1:149858357-149858377 3.80e-02 20 chr14:23938578-23938598 1.93e-01 20 chr1:10270472-10270492 4.75e-01 20 chr20:45323366-45323386 7.76e-01 20 chr19:51182807-51182827 4.89e-01 20 chr19:47551917-47551937 1.47e-01 20 chr2:27008668-27008688 8.73e-01 20 chr2:10262809-10262829 9.83e-01 20 chr13:73633008-73633028 9.93e-02 20 chr19:14228714-14228734 7.91e-01 20 chr11:66405978-66405998 4.82e-01 20 chr9:131843135-131843155 7.44e-01 20 chr15:40697848-40697868 6.67e-01 20 chr1:221915530-221915550 9.91e-01 20 chr12:510708-510728 1.08e-01 2_[+1(9.37e-05)]_10 chrX:47415656-47415676 3.38e-01 20 chr11:4629568-4629588 9.04e-05 12_[+1(1.40e-05)] chr19:45873937-45873957 5.95e-04 4_[+2(8.30e-05)]_8 chr14:106873683-10687370 2.10e-02 5_[+3(1.39e-05)]_7 chr14:68286436-68286456 1.84e-04 11_[+1(6.70e-05)]_1 chr8:30506115-30506135 1.65e-01 20 chr1:53168787-53168807 1.22e-01 20 chr6:153304234-153304254 3.83e-02 20 chr10:102790939-10279095 8.80e-01 20 chr7:100184097-100184117 9.70e-01 20 chr19:42901211-42901231 4.98e-01 20 chr13:107188087-10718810 6.06e-01 20 chr1:86965924-86965944 4.08e-01 20 chr5:137549057-137549077 2.95e-03 6_[+5(5.91e-06)]_6 chr2:46771301-46771321 7.62e-03 20 chr1:28562560-28562580 3.07e-01 20 chr21:44772711-44772731 4.19e-01 20 chr22:40440657-40440677 8.83e-01 20 chr1:20988071-20988091 7.96e-01 20 chr17:17653454-17653474 6.83e-01 20 chrX:70585845-70585865 3.68e-02 20 chr6:82957516-82957536 3.46e-01 20 chr7:44887950-44887970 4.73e-03 [+5(5.91e-06)]_12 chr5:33441006-33441026 6.20e-02 20 chr19:36193347-36193367 3.65e-02 20 chr14:21905439-21905459 9.06e-01 20 chr5:145583073-145583093 5.45e-02 20 chr20:40293408-40293428 1.29e-02 7_[+1(9.37e-05)]_5 chr14:107147799-10714781 1.54e-02 8_[+3(1.39e-05)]_4 chr1:227127821-227127841 1.02e-01 20 chr6:27100732-27100752 4.05e-01 20 chr6:147523644-147523664 4.14e-01 20 chr3:114866186-114866206 2.26e-01 20 chr11:94801928-94801948 2.13e-02 4_[+3(1.39e-05)]_8 chr17:57232687-57232707 1.83e-01 20 chr22:38054397-38054417 4.36e-01 20 chr19:10362528-10362548 4.88e-02 20 chr17:47866558-47866578 2.03e-01 20 chr12:21654576-21654596 1.90e-02 12_[+2(1.44e-05)] chr3:4516761-4516781 2.63e-01 20 chr19:11849846-11849866 6.70e-02 9_[+1(6.70e-05)]_3 chr14:24584425-24584445 9.16e-01 20 chr17:47270293-47270313 8.88e-02 20 chr11:124981559-12498157 5.55e-02 20 chr15:49103399-49103419 5.31e-01 20 chr12:51632963-51632983 8.92e-01 20 chr11:31531227-31531247 8.75e-01 20 chr17:26646056-26646076 4.40e-01 20 chr19:36248928-36248948 1.23e-01 20 chr3:42543931-42543951 6.38e-01 20 chr22:37172283-37172303 7.21e-01 20 chr3:179280620-179280640 7.29e-01 20 chr5:137667549-137667569 5.59e-03 5_[+4(4.51e-05)]_7 chr3:149530927-149530947 1.23e-01 20 chr12:27676999-27677019 8.52e-01 20 chr19:58892651-58892671 7.72e-01 20 chr19:54663640-54663660 1.43e-02 4_[+4(6.45e-05)]_8 chr12:54674408-54674428 3.48e-01 20 chr2:20251516-20251536 7.26e-02 3_[+1(6.70e-05)]_9 chr3:25706474-25706494 4.66e-01 20 chr6:53213871-53213891 1.34e-01 20 chr7:30544486-30544506 5.74e-04 [+3(4.90e-05)]_12 chr3:195163959-195163979 6.96e-01 20 chr9:34329427-34329447 2.21e-01 20 chr17:79650836-79650856 8.94e-02 20 chr11:22647425-22647445 2.63e-01 20 chr1:41174918-41174938 5.77e-02 20 chr1:154947017-154947037 1.75e-02 20 chr6:43142511-43142531 2.47e-01 20 chr20:44509746-44509766 3.41e-01 20 chr12:98909322-98909342 1.55e-02 20 chr1:54665767-54665787 5.66e-04 12_[+3(2.45e-05)] chr6:150067653-150067673 8.84e-01 20 chr17:46018847-46018867 3.98e-01 20 chr11:63953412-63953432 1.74e-01 20 chr17:39943130-39943150 4.34e-03 [+4(2.57e-05)]_12 chr7:132937749-132937769 2.93e-03 [+4(2.57e-05)]_12 chr20:44486102-44486122 4.86e-01 20 chr15:74890771-74890791 1.30e-03 2_[+2(8.30e-05)]_10 chrX:48595678-48595698 5.91e-01 20 chr19:13906101-13906121 7.55e-01 20 chr1:167691154-167691174 8.40e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n10.farnam.hpc.yale.internal ********************************************************************************