******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/NFIC.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr1:67637837-67637857 1.0000 20 chr18:43593688-43593708 1.0000 20 chr7:124533384-124533404 1.0000 20 chr2:136422298-136422318 1.0000 20 chr12:65271305-65271325 1.0000 20 chr13:79578277-79578297 1.0000 20 chr7:137580440-137580460 1.0000 20 chr8:60027887-60027907 1.0000 20 chr4:101744679-101744699 1.0000 20 chr3:178232052-178232072 1.0000 20 chr13:24368910-24368930 1.0000 20 chr9:71192939-71192959 1.0000 20 chr2:105931969-105931989 1.0000 20 chr4:86623326-86623346 1.0000 20 chr6:20900931-20900951 1.0000 20 chr4:123463761-123463781 1.0000 20 chr15:57252461-57252481 1.0000 20 chr5:120735695-120735715 1.0000 20 chr6:16670942-16670962 1.0000 20 chr8:59053703-59053723 1.0000 20 chr2:13645086-13645106 1.0000 20 chr11:123253050-12325307 1.0000 20 chr8:78103830-78103850 1.0000 20 chr14:40381723-40381743 1.0000 20 chr3:101022106-101022126 1.0000 20 chr1:182592422-182592442 1.0000 20 chr4:37717653-37717673 1.0000 20 chr10:61846802-61846822 1.0000 20 chr1:97625100-97625120 1.0000 20 chr5:143138497-143138517 1.0000 20 chr5:1313247-1313267 1.0000 20 chr3:178495680-178495700 1.0000 20 chr1:219638780-219638800 1.0000 20 chr1:160424359-160424379 1.0000 20 chr10:92753300-92753320 1.0000 20 chr9:37403180-37403200 1.0000 20 chr20:40091201-40091221 1.0000 20 chr7:80267841-80267861 1.0000 20 chr9:71193228-71193248 1.0000 20 chr22:46075356-46075376 1.0000 20 chr11:112043257-11204327 1.0000 20 chr6:110423779-110423799 1.0000 20 chr3:118491748-118491768 1.0000 20 chr7:76895932-76895952 1.0000 20 chr3:185829331-185829351 1.0000 20 chr17:68295499-68295519 1.0000 20 chr10:93861680-93861700 1.0000 20 chr5:95616059-95616079 1.0000 20 chr8:42712243-42712263 1.0000 20 chr10:4174056-4174076 1.0000 20 chr15:52305440-52305460 1.0000 20 chr10:65467265-65467285 1.0000 20 chr1:174784698-174784718 1.0000 20 chr2:36473613-36473633 1.0000 20 chr1:66865732-66865752 1.0000 20 chr2:158169547-158169567 1.0000 20 chr11:90434387-90434407 1.0000 20 chr7:148610390-148610410 1.0000 20 chr13:96231828-96231848 1.0000 20 chr15:83501464-83501484 1.0000 20 chr3:189807681-189807701 1.0000 20 chr8:59881618-59881638 1.0000 20 chr3:150502330-150502350 1.0000 20 chr6:38284416-38284436 1.0000 20 chr5:15442090-15442110 1.0000 20 chr7:120042671-120042691 1.0000 20 chr1:117087618-117087638 1.0000 20 chr2:197065492-197065512 1.0000 20 chr14:65676952-65676972 1.0000 20 chr1:79506540-79506560 1.0000 20 chr18:51777428-51777448 1.0000 20 chr2:157753016-157753036 1.0000 20 chr1:89506900-89506920 1.0000 20 chr1:184915344-184915364 1.0000 20 chr12:78389419-78389439 1.0000 20 chr4:122200110-122200130 1.0000 20 chr10:8175246-8175266 1.0000 20 chr1:83974275-83974295 1.0000 20 chr16:71642372-71642392 1.0000 20 chr9:119714196-119714216 1.0000 20 chr10:22597493-22597513 1.0000 20 chr4:80098717-80098737 1.0000 20 chr21:35956664-35956684 1.0000 20 chr14:36403909-36403929 1.0000 20 chr10:64591296-64591316 1.0000 20 chr3:189923706-189923726 1.0000 20 chr11:106914514-10691453 1.0000 20 chr3:188027700-188027720 1.0000 20 chr11:123252804-12325282 1.0000 20 chr13:46646230-46646250 1.0000 20 chr1:183811811-183811831 1.0000 20 chr4:104419619-104419639 1.0000 20 chr7:83428029-83428049 1.0000 20 chr16:75413427-75413447 1.0000 20 chr1:161714079-161714099 1.0000 20 chr8:30932072-30932092 1.0000 20 chr6:3209844-3209864 1.0000 20 chr11:57583145-57583165 1.0000 20 chr12:27374769-27374789 1.0000 20 chr12:24975221-24975241 1.0000 20 chr4:26733131-26733151 1.0000 20 chr3:23078441-23078461 1.0000 20 chr14:71990959-71990979 1.0000 20 chr2:99330297-99330317 1.0000 20 chr6:145671418-145671438 1.0000 20 chr5:143139814-143139834 1.0000 20 chr13:99934718-99934738 1.0000 20 chr7:92271646-92271666 1.0000 20 chr8:102806009-102806029 1.0000 20 chr2:181993114-181993134 1.0000 20 chr5:55067198-55067218 1.0000 20 chr13:50649190-50649210 1.0000 20 chr12:26901857-26901877 1.0000 20 chrX:99881065-99881085 1.0000 20 chr8:60060385-60060405 1.0000 20 chr18:56658822-56658842 1.0000 20 chr6:135703389-135703409 1.0000 20 chr1:117370013-117370033 1.0000 20 chr2:137013369-137013389 1.0000 20 chr8:116439996-116440016 1.0000 20 chr2:188941565-188941585 1.0000 20 chr3:46411544-46411564 1.0000 20 chr4:170214666-170214686 1.0000 20 chr6:16475337-16475357 1.0000 20 chr21:45565231-45565251 1.0000 20 chr7:92443071-92443091 1.0000 20 chr15:60928135-60928155 1.0000 20 chr4:146729633-146729653 1.0000 20 chr3:177069805-177069825 1.0000 20 chr6:129812265-129812285 1.0000 20 chr9:92714885-92714905 1.0000 20 chr20:23625085-23625105 1.0000 20 chr4:113120866-113120886 1.0000 20 chr7:92264380-92264400 1.0000 20 chr3:105903882-105903902 1.0000 20 chr3:71136896-71136916 1.0000 20 chr1:246493378-246493398 1.0000 20 chr1:187955510-187955530 1.0000 20 chr6:122744212-122744232 1.0000 20 chr13:78293464-78293484 1.0000 20 chr3:58860653-58860673 1.0000 20 chr4:185455945-185455965 1.0000 20 chr2:158103095-158103115 1.0000 20 chr2:7898435-7898455 1.0000 20 chr2:201994108-201994128 1.0000 20 chr5:118873652-118873672 1.0000 20 chr4:122177720-122177740 1.0000 20 chr3:159682324-159682344 1.0000 20 chr12:102253605-10225362 1.0000 20 chr5:33300693-33300713 1.0000 20 chr4:76979689-76979709 1.0000 20 chr8:128197025-128197045 1.0000 20 chr5:157030573-157030593 1.0000 20 chr20:47400925-47400945 1.0000 20 chr5:71778014-71778034 1.0000 20 chr2:53161891-53161911 1.0000 20 chr4:140780089-140780109 1.0000 20 chr14:65929224-65929244 1.0000 20 chr3:189305099-189305119 1.0000 20 chr1:101644530-101644550 1.0000 20 chr18:42305810-42305830 1.0000 20 chr3:170350800-170350820 1.0000 20 chr6:2111614-2111634 1.0000 20 chr17:72510594-72510614 1.0000 20 chr6:80045075-80045095 1.0000 20 chr11:58292653-58292673 1.0000 20 chr9:112864037-112864057 1.0000 20 chr10:8173464-8173484 1.0000 20 chr4:37717878-37717898 1.0000 20 chr8:128569472-128569492 1.0000 20 chr1:26909343-26909363 1.0000 20 chr6:70295520-70295540 1.0000 20 chr14:70939175-70939195 1.0000 20 chr3:170966815-170966835 1.0000 20 chr2:32940760-32940780 1.0000 20 chr2:61061583-61061603 1.0000 20 chr4:6966410-6966430 1.0000 20 chr10:26661995-26662015 1.0000 20 chr1:110359201-110359221 1.0000 20 chr1:101665117-101665137 1.0000 20 chr3:16551820-16551840 1.0000 20 chr12:24872544-24872564 1.0000 20 chr8:59080447-59080467 1.0000 20 chr12:13052632-13052652 1.0000 20 chr5:157038817-157038837 1.0000 20 chrX:13023913-13023933 1.0000 20 chr14:90147659-90147679 1.0000 20 chr9:114799961-114799981 1.0000 20 chr2:38161983-38162003 1.0000 20 chr13:114833037-11483305 1.0000 20 chr14:54037320-54037340 1.0000 20 chr4:106113093-106113113 1.0000 20 chr3:45902792-45902812 1.0000 20 chr10:6100817-6100837 1.0000 20 chr9:2055398-2055418 1.0000 20 chr2:192515804-192515824 1.0000 20 chr13:99974635-99974655 1.0000 20 chr12:111057457-11105747 1.0000 20 chr2:146351040-146351060 1.0000 20 chr1:149969712-149969732 1.0000 20 chr4:146984420-146984440 1.0000 20 chr3:189112545-189112565 1.0000 20 chr3:106018299-106018319 1.0000 20 chr6:157990764-157990784 1.0000 20 chr3:170352594-170352614 1.0000 20 chr5:58476518-58476538 1.0000 20 chr11:75773951-75773971 1.0000 20 chr5:108497941-108497961 1.0000 20 chr11:95289977-95289997 1.0000 20 chr3:197561384-197561404 1.0000 20 chr12:90159909-90159929 1.0000 20 chr3:41878406-41878426 1.0000 20 chr9:123694020-123694040 1.0000 20 chr1:243759832-243759852 1.0000 20 chr15:44600737-44600757 1.0000 20 chr10:88609420-88609440 1.0000 20 chr3:121813222-121813242 1.0000 20 chr12:102028737-10202875 1.0000 20 chr13:42987052-42987072 1.0000 20 chr5:118733493-118733513 1.0000 20 chr17:38717313-38717333 1.0000 20 chr12:76577455-76577475 1.0000 20 chr6:14877529-14877549 1.0000 20 chr3:131433861-131433881 1.0000 20 chr4:40230398-40230418 1.0000 20 chr1:28471171-28471191 1.0000 20 chr15:76867838-76867858 1.0000 20 chr5:39784021-39784041 1.0000 20 chr6:140908115-140908135 1.0000 20 chr4:120159433-120159453 1.0000 20 chr17:39071743-39071763 1.0000 20 chr8:103209513-103209533 1.0000 20 chr7:8005966-8005986 1.0000 20 chr21:36346721-36346741 1.0000 20 chr6:53096658-53096678 1.0000 20 chr8:77512079-77512099 1.0000 20 chr10:114306436-11430645 1.0000 20 chr14:65673222-65673242 1.0000 20 chr6:155492630-155492650 1.0000 20 chr18:57594652-57594672 1.0000 20 chr3:143255016-143255036 1.0000 20 chr5:138783179-138783199 1.0000 20 chr10:58079326-58079346 1.0000 20 chr12:95482297-95482317 1.0000 20 chr1:181906009-181906029 1.0000 20 chr3:171065430-171065450 1.0000 20 chr6:75308263-75308283 1.0000 20 chr15:56664139-56664159 1.0000 20 chr3:16631622-16631642 1.0000 20 chr13:45780678-45780698 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_NFIC/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/NFIC.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.307 C 0.19 G 0.195 T 0.308 Background letter frequencies (from file dataset with add-one prior applied): A 0.307 C 0.19 G 0.195 T 0.308 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TGASTCAK MEME-1 width = 8 sites = 24 llr = 186 E-value = 2.5e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGASTCAK MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::a::1a: pos.-specific C :::4:9:2 probability G :8:5:::3 matrix T a2:1a::5 bits 2.4 2.2 1.9 * 1.7 * * ** Relative 1.4 *** *** Entropy 1.2 *** *** (11.2 bits) 1.0 ******* 0.7 ******* 0.5 ******* 0.2 ******** 0.0 -------- Multilevel TGAGTCAT consensus T C G sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAK MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:14877529-14877549 4 6.41e-05 CGG TGAGTCAT TTCAACTTC chr12:76577455-76577475 10 6.41e-05 AGTGCCAGG TGACTCAG AGC chr2:7898435-7898455 12 6.41e-05 GATTCTTAAA TGACTCAG A chr3:58860653-58860673 11 6.41e-05 TTAAATGAAA TGAGTCAG AA chr7:92264380-92264400 8 6.41e-05 AGAGGGA TGACTCAT TGCAT chr4:26733131-26733151 11 6.41e-05 agggaggtgg tgagtcat tt chr4:104419619-104419639 7 6.41e-05 AGTACA TGACTCAT GGCAGT chr10:65467265-65467285 7 6.41e-05 TAGTCC TGACTCAG TTCCCA chr15:57252461-57252481 8 6.41e-05 TTTAGTT TGAGTCAT TTTTG chr7:124533384-124533404 2 6.41e-05 T TGAGTCAT AAATGGTATA chr10:64591296-64591316 12 8.84e-05 CAAGCTGCAG TGAGTCAC C chr16:71642372-71642392 7 8.84e-05 GAACAA TGAGTCAC TGATGG chr2:53161891-53161911 7 1.40e-04 CAAATC TGATTCAG TATTCT chr4:76979689-76979709 9 1.40e-04 ATCACTGC TGATTCAT ATGT chr10:92753300-92753320 11 1.40e-04 tctgtaggat tgattcat tt chr5:39784021-39784041 9 2.41e-04 tagattta ttagtcat tagg chr12:13052632-13052652 8 2.41e-04 attattC TTACTCAT AATTA chr9:92714885-92714905 2 2.41e-04 a ttagtcag agtggactaa chr3:189807681-189807701 13 2.99e-04 ACATCACATT TTAGTCAC chr11:112043257-11204327 13 2.99e-04 AAACCAGAAA TTACTCAC chr9:71192939-71192959 12 3.38e-04 AGGTGAGAAT TGACTCAA A chr15:44600737-44600757 5 4.96e-04 tgtt tgagtccc tggtttca chr2:192515804-192515824 13 4.96e-04 acctaaggat tgactaag chr6:129812265-129812285 11 4.96e-04 CTAATGCTTA TGACTAAT AG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAK MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:14877529-14877549 6.4e-05 3_[+1]_9 chr12:76577455-76577475 6.4e-05 9_[+1]_3 chr2:7898435-7898455 6.4e-05 11_[+1]_1 chr3:58860653-58860673 6.4e-05 10_[+1]_2 chr7:92264380-92264400 6.4e-05 7_[+1]_5 chr4:26733131-26733151 6.4e-05 10_[+1]_2 chr4:104419619-104419639 6.4e-05 6_[+1]_6 chr10:65467265-65467285 6.4e-05 6_[+1]_6 chr15:57252461-57252481 6.4e-05 7_[+1]_5 chr7:124533384-124533404 6.4e-05 1_[+1]_11 chr10:64591296-64591316 8.8e-05 11_[+1]_1 chr16:71642372-71642392 8.8e-05 6_[+1]_6 chr2:53161891-53161911 0.00014 6_[+1]_6 chr4:76979689-76979709 0.00014 8_[+1]_4 chr10:92753300-92753320 0.00014 10_[+1]_2 chr5:39784021-39784041 0.00024 8_[+1]_4 chr12:13052632-13052652 0.00024 7_[+1]_5 chr9:92714885-92714905 0.00024 1_[+1]_11 chr3:189807681-189807701 0.0003 12_[+1] chr11:112043257-11204327 0.0003 12_[+1] chr9:71192939-71192959 0.00034 11_[+1]_1 chr15:44600737-44600757 0.0005 4_[+1]_8 chr2:192515804-192515824 0.0005 12_[+1] chr6:129812265-129812285 0.0005 10_[+1]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAK MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGASTCAK width=8 seqs=24 chr6:14877529-14877549 ( 4) TGAGTCAT 1 chr12:76577455-76577475 ( 10) TGACTCAG 1 chr2:7898435-7898455 ( 12) TGACTCAG 1 chr3:58860653-58860673 ( 11) TGAGTCAG 1 chr7:92264380-92264400 ( 8) TGACTCAT 1 chr4:26733131-26733151 ( 11) TGAGTCAT 1 chr4:104419619-104419639 ( 7) TGACTCAT 1 chr10:65467265-65467285 ( 7) TGACTCAG 1 chr15:57252461-57252481 ( 8) TGAGTCAT 1 chr7:124533384-124533404 ( 2) TGAGTCAT 1 chr10:64591296-64591316 ( 12) TGAGTCAC 1 chr16:71642372-71642392 ( 7) TGAGTCAC 1 chr2:53161891-53161911 ( 7) TGATTCAG 1 chr4:76979689-76979709 ( 9) TGATTCAT 1 chr10:92753300-92753320 ( 11) TGATTCAT 1 chr5:39784021-39784041 ( 9) TTAGTCAT 1 chr12:13052632-13052652 ( 8) TTACTCAT 1 chr9:92714885-92714905 ( 2) TTAGTCAG 1 chr3:189807681-189807701 ( 13) TTAGTCAC 1 chr11:112043257-11204327 ( 13) TTACTCAC 1 chr9:71192939-71192959 ( 12) TGACTCAA 1 chr15:44600737-44600757 ( 5) TGAGTCCC 1 chr2:192515804-192515824 ( 13) TGACTAAG 1 chr6:129812265-129812285 ( 11) TGACTAAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAK MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.52089 E= 2.5e-006 -1123 -1123 -1123 170 -1123 -1123 202 -57 170 -1123 -1123 -1123 -1123 113 123 -130 -1123 -1123 -1123 170 -188 227 -1123 -1123 164 -219 -1123 -1123 -288 13 58 57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAK MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 2.5e-006 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.791667 0.208333 1.000000 0.000000 0.000000 0.000000 0.000000 0.416667 0.458333 0.125000 0.000000 0.000000 0.000000 1.000000 0.083333 0.916667 0.000000 0.000000 0.958333 0.041667 0.000000 0.000000 0.041667 0.208333 0.291667 0.458333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAK MEME-1 regular expression -------------------------------------------------------------------------------- T[GT]A[GC]TCA[TGC] -------------------------------------------------------------------------------- Time 4.98 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTCWGTG MEME-2 width = 8 sites = 17 llr = 136 E-value = 2.7e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTCWGTG MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::6::: pos.-specific C 21:a:3:1 probability G :::::7:7 matrix T 89a:4:a2 bits 2.4 * 2.2 * 1.9 * 1.7 ** * Relative 1.4 ** ** Entropy 1.2 **** *** (11.5 bits) 1.0 **** *** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTTCAGTG consensus TC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCWGTG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:148610390-148610410 13 2.00e-05 ATTTCTGTAC TTTCAGTG chr1:174784698-174784718 13 2.00e-05 TAACCAGTGA TTTCAGTG chr10:4174056-4174076 4 2.00e-05 TAC TTTCAGTG GAATTTTAA chr6:155492630-155492650 2 4.00e-05 C TTTCTGTG GCAGTGAGTG chr12:90159909-90159929 5 4.00e-05 ttac tttctgtg gtagactt chr14:54037320-54037340 3 4.00e-05 TC TTTCTGTG ATTAAGTTCA chr20:40091201-40091221 4 5.94e-05 ggc tttcactg ttggagaag chr5:1313247-1313267 12 7.17e-05 GCCACGGCAG CTTCAGTG A chr6:122744212-122744232 4 1.04e-04 ACC TTTCTCTG TTTTGGTCA chr8:42712243-42712263 12 1.04e-04 CCTCTGGTCA TTTCTCTG C chr11:95289977-95289997 10 1.67e-04 GCACTGGGG TTTCAGTT GAT chr13:50649190-50649210 12 1.67e-04 AAAGTGGTTT TTTCAGTT T chr2:181993114-181993134 6 1.67e-04 AGTAA TTTCAGTT ATGTTCT chr15:76867838-76867858 1 2.93e-04 . tttcactc atcttcttct chr8:102806009-102806029 5 2.93e-04 TATT TTTCACTC TTTGTAAA chr14:71990959-71990979 5 2.93e-04 ctag cctcagtg tctattat chr3:189305099-189305119 10 4.06e-04 ctgtgtcaa cCTCTGTG TAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCWGTG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:148610390-148610410 2e-05 12_[+2] chr1:174784698-174784718 2e-05 12_[+2] chr10:4174056-4174076 2e-05 3_[+2]_9 chr6:155492630-155492650 4e-05 1_[+2]_11 chr12:90159909-90159929 4e-05 4_[+2]_8 chr14:54037320-54037340 4e-05 2_[+2]_10 chr20:40091201-40091221 5.9e-05 3_[+2]_9 chr5:1313247-1313267 7.2e-05 11_[+2]_1 chr6:122744212-122744232 0.0001 3_[+2]_9 chr8:42712243-42712263 0.0001 11_[+2]_1 chr11:95289977-95289997 0.00017 9_[+2]_3 chr13:50649190-50649210 0.00017 11_[+2]_1 chr2:181993114-181993134 0.00017 5_[+2]_7 chr15:76867838-76867858 0.00029 [+2]_12 chr8:102806009-102806029 0.00029 4_[+2]_8 chr14:71990959-71990979 0.00029 4_[+2]_8 chr3:189305099-189305119 0.00041 9_[+2]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCWGTG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTCWGTG width=8 seqs=17 chr7:148610390-148610410 ( 13) TTTCAGTG 1 chr1:174784698-174784718 ( 13) TTTCAGTG 1 chr10:4174056-4174076 ( 4) TTTCAGTG 1 chr6:155492630-155492650 ( 2) TTTCTGTG 1 chr12:90159909-90159929 ( 5) TTTCTGTG 1 chr14:54037320-54037340 ( 3) TTTCTGTG 1 chr20:40091201-40091221 ( 4) TTTCACTG 1 chr5:1313247-1313267 ( 12) CTTCAGTG 1 chr6:122744212-122744232 ( 4) TTTCTCTG 1 chr8:42712243-42712263 ( 12) TTTCTCTG 1 chr11:95289977-95289997 ( 10) TTTCAGTT 1 chr13:50649190-50649210 ( 12) TTTCAGTT 1 chr2:181993114-181993134 ( 6) TTTCAGTT 1 chr15:76867838-76867858 ( 1) TTTCACTC 1 chr8:102806009-102806029 ( 5) TTTCACTC 1 chr14:71990959-71990979 ( 5) CCTCAGTG 1 chr3:189305099-189305119 ( 10) CCTCTGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCWGTG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.64109 E= 2.7e+000 -1073 -11 -1073 142 -1073 -69 -1073 152 -1073 -1073 -1073 170 -1073 239 -1073 -1073 108 -1073 -1073 19 -1073 63 186 -1073 -1073 -1073 -1073 170 -1073 -69 186 -80 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCWGTG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 2.7e+000 0.000000 0.176471 0.000000 0.823529 0.000000 0.117647 0.000000 0.882353 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.647059 0.000000 0.000000 0.352941 0.000000 0.294118 0.705882 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.117647 0.705882 0.176471 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCWGTG MEME-2 regular expression -------------------------------------------------------------------------------- TTTC[AT][GC]TG -------------------------------------------------------------------------------- Time 8.33 secs. ******************************************************************************** ******************************************************************************** MOTIF ACCACASA MEME-3 width = 8 sites = 10 llr = 91 E-value = 1.4e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACCACASA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 9::9:a28 pos.-specific C 1aa:a:31 probability G ::::::51 matrix T :::1:::: bits 2.4 ** * 2.2 ** * 1.9 ** * 1.7 ** ** Relative 1.4 ** ** Entropy 1.2 ****** (13.1 bits) 1.0 ****** * 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ACCACAGA consensus C sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCACASA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:188027700-188027720 5 1.19e-05 GCAG ACCACAGA GAGTAAAA chr2:157753016-157753036 2 1.19e-05 A ACCACAGA ATGTTTCCTG chr22:46075356-46075376 10 1.19e-05 GGTCAACAT ACCACAGA GGT chr7:80267841-80267861 13 2.35e-05 CTGGCAACAA ACCACACA chr12:78389419-78389439 4 4.22e-05 TTG ACCACAAA GACTGCGTC chr2:36473613-36473633 1 4.22e-05 . ACCACAAA AGAAATTCTA chr13:99974635-99974655 7 5.71e-05 GTCATT ACCACAGG GATGCA chr3:170350800-170350820 12 9.09e-05 TCAATTAAAA ACCACACC G chr12:24975221-24975241 5 9.09e-05 CTTA ACCTCAGA GATTATTA chr1:243759832-243759852 10 9.80e-05 taacatact cccacaca ctc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCACASA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:188027700-188027720 1.2e-05 4_[+3]_8 chr2:157753016-157753036 1.2e-05 1_[+3]_11 chr22:46075356-46075376 1.2e-05 9_[+3]_3 chr7:80267841-80267861 2.3e-05 12_[+3] chr12:78389419-78389439 4.2e-05 3_[+3]_9 chr2:36473613-36473633 4.2e-05 [+3]_12 chr13:99974635-99974655 5.7e-05 6_[+3]_6 chr3:170350800-170350820 9.1e-05 11_[+3]_1 chr12:24975221-24975241 9.1e-05 4_[+3]_8 chr1:243759832-243759852 9.8e-05 9_[+3]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCACASA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACCACASA width=8 seqs=10 chr3:188027700-188027720 ( 5) ACCACAGA 1 chr2:157753016-157753036 ( 2) ACCACAGA 1 chr22:46075356-46075376 ( 10) ACCACAGA 1 chr7:80267841-80267861 ( 13) ACCACACA 1 chr12:78389419-78389439 ( 4) ACCACAAA 1 chr2:36473613-36473633 ( 1) ACCACAAA 1 chr13:99974635-99974655 ( 7) ACCACAGG 1 chr3:170350800-170350820 ( 12) ACCACACC 1 chr12:24975221-24975241 ( 5) ACCTCAGA 1 chr1:243759832-243759852 ( 10) CCCACACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCACASA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.2854 E= 1.4e+001 155 -93 -997 -997 -997 239 -997 -997 -997 239 -997 -997 155 -997 -997 -162 -997 239 -997 -997 170 -997 -997 -997 -62 66 136 -997 138 -93 -96 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCACASA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 1.4e+001 0.900000 0.100000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.900000 0.000000 0.000000 0.100000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.200000 0.300000 0.500000 0.000000 0.800000 0.100000 0.100000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCACASA MEME-3 regular expression -------------------------------------------------------------------------------- ACCACA[GCA]A -------------------------------------------------------------------------------- Time 11.59 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGTYCCT MEME-4 width = 8 sites = 5 llr = 54 E-value = 7.1e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGTYCCT MEME-4 Description -------------------------------------------------------------------------------- Simplified A :a:::::: pos.-specific C a:::4aa: probability G ::a::::: matrix T :::a6::a bits 2.4 * * ** 2.2 * * ** 1.9 * * ** 1.7 **** *** Relative 1.4 **** *** Entropy 1.2 **** *** (15.7 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CAGTTCCT consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTYCCT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:170352594-170352614 7 7.40e-06 AGACAA CAGTCCCT CTGGTC chr1:79506540-79506560 8 7.40e-06 TCATTTG CAGTCCCT AAATA chr12:95482297-95482317 1 1.94e-05 . cagttcct caaaaagtta chr15:60928135-60928155 1 1.94e-05 . CAGTTCCT GTATTTTCAG chr9:71193228-71193248 1 1.94e-05 . CAGTTCCT TTTATTTCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTYCCT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:170352594-170352614 7.4e-06 6_[+4]_6 chr1:79506540-79506560 7.4e-06 7_[+4]_5 chr12:95482297-95482317 1.9e-05 [+4]_12 chr15:60928135-60928155 1.9e-05 [+4]_12 chr9:71193228-71193248 1.9e-05 [+4]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTYCCT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGTYCCT width=8 seqs=5 chr3:170352594-170352614 ( 7) CAGTCCCT 1 chr1:79506540-79506560 ( 8) CAGTCCCT 1 chr12:95482297-95482317 ( 1) CAGTTCCT 1 chr15:60928135-60928155 ( 1) CAGTTCCT 1 chr9:71193228-71193248 ( 1) CAGTTCCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTYCCT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.77541 E= 7.1e+001 -897 239 -897 -897 170 -897 -897 -897 -897 -897 236 -897 -897 -897 -897 170 -897 107 -897 96 -897 239 -897 -897 -897 239 -897 -897 -897 -897 -897 170 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTYCCT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.1e+001 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.400000 0.000000 0.600000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTYCCT MEME-4 regular expression -------------------------------------------------------------------------------- CAGT[TC]CCT -------------------------------------------------------------------------------- Time 13.12 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGGGAAA MEME-5 width = 8 sites = 5 llr = 55 E-value = 7.5e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGGGAAA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::aa6 pos.-specific C :::::::2 probability G aaaaa::2 matrix T :::::::: bits 2.4 ***** 2.2 ***** 1.9 ***** 1.7 ******* Relative 1.4 ******* Entropy 1.2 ******* (15.8 bits) 1.0 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGGGGAAA consensus C sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGAAA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:24872544-24872564 10 8.16e-06 aggcttcaa gggggaaa acc chr7:92443071-92443091 13 8.16e-06 GAGGAACATG GGGGGAAA chr4:122200110-122200130 10 8.16e-06 GACTATTGT GGGGGAAA TAT chr3:171065430-171065450 9 1.84e-05 AGCAATTT GGGGGAAC TTCA chr3:177069805-177069825 1 1.84e-05 . GGGGGAAG TAAAGTATAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGAAA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:24872544-24872564 8.2e-06 9_[+5]_3 chr7:92443071-92443091 8.2e-06 12_[+5] chr4:122200110-122200130 8.2e-06 9_[+5]_3 chr3:171065430-171065450 1.8e-05 8_[+5]_4 chr3:177069805-177069825 1.8e-05 [+5]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGAAA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGGGAAA width=8 seqs=5 chr12:24872544-24872564 ( 10) GGGGGAAA 1 chr7:92443071-92443091 ( 13) GGGGGAAA 1 chr4:122200110-122200130 ( 10) GGGGGAAA 1 chr3:171065430-171065450 ( 9) GGGGGAAC 1 chr3:177069805-177069825 ( 1) GGGGGAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGAAA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.59397 E= 7.5e+001 -897 -897 236 -897 -897 -897 236 -897 -897 -897 236 -897 -897 -897 236 -897 -897 -897 236 -897 170 -897 -897 -897 170 -897 -897 -897 97 7 4 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGAAA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.5e+001 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.600000 0.200000 0.200000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGAAA MEME-5 regular expression -------------------------------------------------------------------------------- GGGGGAA[ACG] -------------------------------------------------------------------------------- Time 13.81 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:67637837-67637857 5.01e-01 20 chr18:43593688-43593708 9.51e-01 20 chr7:124533384-124533404 7.55e-02 1_[+1(6.41e-05)]_11 chr2:136422298-136422318 1.55e-01 20 chr12:65271305-65271325 7.23e-01 20 chr13:79578277-79578297 7.47e-01 20 chr7:137580440-137580460 6.28e-01 20 chr8:60027887-60027907 1.08e-01 20 chr4:101744679-101744699 6.16e-01 20 chr3:178232052-178232072 5.32e-02 20 chr13:24368910-24368930 2.04e-01 20 chr9:71192939-71192959 2.48e-02 20 chr2:105931969-105931989 9.47e-01 20 chr4:86623326-86623346 9.91e-01 20 chr6:20900931-20900951 8.41e-01 20 chr4:123463761-123463781 9.35e-02 20 chr15:57252461-57252481 1.23e-02 7_[+1(6.41e-05)]_5 chr5:120735695-120735715 6.01e-02 20 chr6:16670942-16670962 7.81e-01 20 chr8:59053703-59053723 5.41e-01 20 chr2:13645086-13645106 9.87e-01 20 chr11:123253050-12325307 1.66e-01 20 chr8:78103830-78103850 9.90e-01 20 chr14:40381723-40381743 1.29e-01 20 chr3:101022106-101022126 7.50e-01 20 chr1:182592422-182592442 6.96e-01 20 chr4:37717653-37717673 6.89e-01 20 chr10:61846802-61846822 8.56e-01 20 chr1:97625100-97625120 5.75e-01 20 chr5:143138497-143138517 1.37e-01 20 chr5:1313247-1313267 8.51e-03 11_[+2(7.17e-05)]_1 chr3:178495680-178495700 2.08e-01 20 chr1:219638780-219638800 1.20e-01 20 chr1:160424359-160424379 9.91e-01 20 chr10:92753300-92753320 6.78e-02 20 chr9:37403180-37403200 3.53e-01 20 chr20:40091201-40091221 1.08e-02 3_[+2(5.94e-05)]_9 chr7:80267841-80267861 3.60e-02 12_[+3(2.35e-05)] chr9:71193228-71193248 2.49e-03 [+4(1.94e-05)]_12 chr22:46075356-46075376 1.81e-02 9_[+3(1.19e-05)]_3 chr11:112043257-11204327 9.23e-03 20 chr6:110423779-110423799 4.85e-01 20 chr3:118491748-118491768 2.90e-01 20 chr7:76895932-76895952 2.63e-01 20 chr3:185829331-185829351 1.98e-01 20 chr17:68295499-68295519 3.11e-01 20 chr10:93861680-93861700 9.19e-01 20 chr5:95616059-95616079 3.41e-01 20 chr8:42712243-42712263 2.01e-02 20 chr10:4174056-4174076 1.19e-02 3_[+2(2.00e-05)]_9 chr15:52305440-52305460 9.27e-01 20 chr10:65467265-65467285 3.47e-04 6_[+1(6.41e-05)]_6 chr1:174784698-174784718 1.84e-03 12_[+2(2.00e-05)] chr2:36473613-36473633 8.38e-02 [+3(4.22e-05)]_12 chr1:66865732-66865752 6.60e-01 20 chr2:158169547-158169567 9.61e-01 20 chr11:90434387-90434407 1.70e-01 20 chr7:148610390-148610410 6.93e-03 12_[+2(2.00e-05)] chr13:96231828-96231848 5.98e-01 20 chr15:83501464-83501484 2.02e-02 20 chr3:189807681-189807701 4.74e-03 20 chr8:59881618-59881638 9.25e-01 20 chr3:150502330-150502350 6.37e-01 20 chr6:38284416-38284436 8.67e-01 20 chr5:15442090-15442110 7.77e-01 20 chr7:120042671-120042691 2.55e-01 20 chr1:117087618-117087638 7.60e-01 20 chr2:197065492-197065512 8.29e-02 20 chr14:65676952-65676972 4.23e-01 20 chr1:79506540-79506560 1.62e-03 7_[+4(7.40e-06)]_5 chr18:51777428-51777448 8.43e-02 20 chr2:157753016-157753036 6.20e-03 1_[+3(1.19e-05)]_11 chr1:89506900-89506920 1.71e-01 20 chr1:184915344-184915364 5.49e-01 20 chr12:78389419-78389439 3.90e-02 3_[+3(4.22e-05)]_9 chr4:122200110-122200130 2.26e-02 9_[+5(8.16e-06)]_3 chr10:8175246-8175266 2.68e-01 20 chr1:83974275-83974295 7.50e-01 20 chr16:71642372-71642392 5.69e-03 6_[+1(8.84e-05)]_6 chr9:119714196-119714216 3.23e-01 20 chr10:22597493-22597513 1.40e-01 20 chr4:80098717-80098737 9.93e-01 20 chr21:35956664-35956684 7.38e-01 20 chr14:36403909-36403929 9.73e-01 20 chr10:64591296-64591316 3.17e-03 11_[+1(8.84e-05)]_1 chr3:189923706-189923726 8.79e-01 20 chr11:106914514-10691453 2.55e-01 20 chr3:188027700-188027720 8.68e-04 4_[+3(1.19e-05)]_8 chr11:123252804-12325282 8.39e-01 20 chr13:46646230-46646250 5.42e-01 20 chr1:183811811-183811831 7.95e-01 20 chr4:104419619-104419639 7.09e-02 6_[+1(6.41e-05)]_6 chr7:83428029-83428049 2.99e-01 20 chr16:75413427-75413447 2.23e-01 20 chr1:161714079-161714099 8.53e-01 20 chr8:30932072-30932092 2.68e-01 20 chr6:3209844-3209864 4.10e-01 20 chr11:57583145-57583165 7.81e-01 20 chr12:27374769-27374789 5.05e-02 20 chr12:24975221-24975241 1.63e-02 4_[+3(9.09e-05)]_8 chr4:26733131-26733151 1.88e-02 10_[+1(6.41e-05)]_2 chr3:23078441-23078461 1.08e-01 20 chr14:71990959-71990979 3.70e-03 20 chr2:99330297-99330317 9.65e-01 20 chr6:145671418-145671438 6.27e-01 20 chr5:143139814-143139834 9.22e-01 20 chr13:99934718-99934738 1.71e-01 20 chr7:92271646-92271666 9.23e-01 20 chr8:102806009-102806029 5.31e-02 20 chr2:181993114-181993134 6.96e-02 20 chr5:55067198-55067218 9.22e-01 20 chr13:50649190-50649210 6.21e-02 20 chr12:26901857-26901877 9.98e-01 20 chrX:99881065-99881085 4.05e-01 20 chr8:60060385-60060405 3.51e-01 20 chr18:56658822-56658842 2.26e-02 20 chr6:135703389-135703409 1.50e-01 20 chr1:117370013-117370033 8.98e-02 20 chr2:137013369-137013389 8.39e-02 20 chr8:116439996-116440016 9.47e-01 20 chr2:188941565-188941585 8.73e-01 20 chr3:46411544-46411564 8.04e-01 20 chr4:170214666-170214686 1.87e-01 20 chr6:16475337-16475357 2.12e-02 20 chr21:45565231-45565251 7.33e-01 20 chr7:92443071-92443091 2.61e-02 12_[+5(8.16e-06)] chr15:60928135-60928155 5.73e-03 [+4(1.94e-05)]_12 chr4:146729633-146729653 3.52e-01 20 chr3:177069805-177069825 6.30e-02 [+5(1.84e-05)]_12 chr6:129812265-129812285 2.10e-01 20 chr9:92714885-92714905 6.63e-02 20 chr20:23625085-23625105 6.61e-01 20 chr4:113120866-113120886 5.36e-01 20 chr7:92264380-92264400 1.72e-03 7_[+1(6.41e-05)]_5 chr3:105903882-105903902 1.98e-01 20 chr3:71136896-71136916 8.32e-01 20 chr1:246493378-246493398 7.90e-01 20 chr1:187955510-187955530 7.51e-01 20 chr6:122744212-122744232 4.49e-02 20 chr13:78293464-78293484 4.45e-01 20 chr3:58860653-58860673 8.53e-02 10_[+1(6.41e-05)]_2 chr4:185455945-185455965 8.56e-01 20 chr2:158103095-158103115 2.89e-01 20 chr2:7898435-7898455 2.02e-02 11_[+1(6.41e-05)]_1 chr2:201994108-201994128 2.89e-01 20 chr5:118873652-118873672 9.09e-01 20 chr4:122177720-122177740 1.59e-01 20 chr3:159682324-159682344 3.57e-01 20 chr12:102253605-10225362 4.93e-02 20 chr5:33300693-33300713 4.45e-01 20 chr4:76979689-76979709 3.87e-02 20 chr8:128197025-128197045 6.46e-01 20 chr5:157030573-157030593 3.04e-02 20 chr20:47400925-47400945 3.81e-02 20 chr5:71778014-71778034 5.18e-01 20 chr2:53161891-53161911 4.85e-02 20 chr4:140780089-140780109 3.38e-01 20 chr14:65929224-65929244 8.37e-01 20 chr3:189305099-189305119 7.40e-03 20 chr1:101644530-101644550 9.91e-01 20 chr18:42305810-42305830 8.02e-01 20 chr3:170350800-170350820 9.67e-02 11_[+3(9.09e-05)]_1 chr6:2111614-2111634 2.12e-01 20 chr17:72510594-72510614 5.99e-01 20 chr6:80045075-80045095 2.73e-01 20 chr11:58292653-58292673 3.86e-01 20 chr9:112864037-112864057 5.82e-02 20 chr10:8173464-8173484 4.55e-01 20 chr4:37717878-37717898 2.16e-01 20 chr8:128569472-128569492 8.10e-01 20 chr1:26909343-26909363 2.73e-02 20 chr6:70295520-70295540 2.83e-01 20 chr14:70939175-70939195 2.24e-01 20 chr3:170966815-170966835 7.82e-01 20 chr2:32940760-32940780 6.00e-01 20 chr2:61061583-61061603 1.09e-01 20 chr4:6966410-6966430 3.99e-01 20 chr10:26661995-26662015 7.84e-01 20 chr1:110359201-110359221 5.77e-01 20 chr1:101665117-101665137 7.95e-02 20 chr3:16551820-16551840 9.43e-02 20 chr12:24872544-24872564 6.82e-03 9_[+5(8.16e-06)]_3 chr8:59080447-59080467 4.64e-01 20 chr12:13052632-13052652 7.32e-02 20 chr5:157038817-157038837 6.50e-01 20 chrX:13023913-13023933 2.66e-01 20 chr14:90147659-90147679 4.82e-01 20 chr9:114799961-114799981 5.04e-01 20 chr2:38161983-38162003 1.87e-01 20 chr13:114833037-11483305 1.43e-01 20 chr14:54037320-54037340 3.68e-03 2_[+2(4.00e-05)]_10 chr4:106113093-106113113 6.54e-01 20 chr3:45902792-45902812 1.71e-01 20 chr10:6100817-6100837 8.34e-01 20 chr9:2055398-2055418 7.29e-01 20 chr2:192515804-192515824 5.58e-02 20 chr13:99974635-99974655 4.07e-03 6_[+3(5.71e-05)]_6 chr12:111057457-11105747 2.72e-02 20 chr2:146351040-146351060 9.76e-01 20 chr1:149969712-149969732 1.58e-01 20 chr4:146984420-146984440 7.66e-01 20 chr3:189112545-189112565 6.94e-01 20 chr3:106018299-106018319 6.44e-02 20 chr6:157990764-157990784 1.91e-01 20 chr3:170352594-170352614 6.98e-04 6_[+4(7.40e-06)]_6 chr5:58476518-58476538 7.54e-02 20 chr11:75773951-75773971 3.13e-01 20 chr5:108497941-108497961 2.22e-02 20 chr11:95289977-95289997 1.11e-02 20 chr3:197561384-197561404 1.88e-01 20 chr12:90159909-90159929 1.52e-02 4_[+2(4.00e-05)]_8 chr3:41878406-41878426 8.10e-01 20 chr9:123694020-123694040 8.45e-01 20 chr1:243759832-243759852 2.13e-02 9_[+3(9.80e-05)]_3 chr15:44600737-44600757 2.12e-03 20 chr10:88609420-88609440 5.77e-01 20 chr3:121813222-121813242 4.90e-01 20 chr12:102028737-10202875 1.25e-01 20 chr13:42987052-42987072 4.13e-01 20 chr5:118733493-118733513 3.22e-01 20 chr17:38717313-38717333 2.92e-01 20 chr12:76577455-76577475 9.34e-03 9_[+1(6.41e-05)]_3 chr6:14877529-14877549 1.36e-02 3_[+1(6.41e-05)]_9 chr3:131433861-131433881 5.25e-01 20 chr4:40230398-40230418 6.18e-01 20 chr1:28471171-28471191 1.74e-01 20 chr15:76867838-76867858 1.70e-02 20 chr5:39784021-39784041 8.91e-02 20 chr6:140908115-140908135 1.48e-01 20 chr4:120159433-120159453 4.94e-01 20 chr17:39071743-39071763 3.79e-01 20 chr8:103209513-103209533 3.61e-01 20 chr7:8005966-8005986 4.41e-01 20 chr21:36346721-36346741 4.32e-02 20 chr6:53096658-53096678 1.60e-01 20 chr8:77512079-77512099 3.03e-01 20 chr10:114306436-11430645 7.16e-01 20 chr14:65673222-65673242 8.93e-01 20 chr6:155492630-155492650 8.83e-03 1_[+2(4.00e-05)]_11 chr18:57594652-57594672 5.16e-01 20 chr3:143255016-143255036 8.06e-01 20 chr5:138783179-138783199 7.63e-01 20 chr10:58079326-58079346 6.99e-01 20 chr12:95482297-95482317 1.56e-03 [+4(1.94e-05)]_12 chr1:181906009-181906029 8.53e-01 20 chr3:171065430-171065450 5.35e-02 8_[+5(1.84e-05)]_4 chr6:75308263-75308283 7.63e-01 20 chr15:56664139-56664159 9.78e-01 20 chr3:16631622-16631642 4.89e-01 20 chr13:45780678-45780698 3.24e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n10.farnam.hpc.yale.internal ********************************************************************************