******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/NFATC3.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2:10232124-10232144 1.0000 20 chr1:17222347-17222367 1.0000 20 chr1:149783956-149783976 1.0000 20 chr21:30449312-30449332 1.0000 20 chr5:77014889-77014909 1.0000 20 chr1:149785334-149785354 1.0000 20 chr1:228645664-228645684 1.0000 20 chr7:148680752-148680772 1.0000 20 chr7:148660289-148660309 1.0000 20 chr10:14227381-14227401 1.0000 20 chr1:149859666-149859686 1.0000 20 chr10:125532101-12553212 1.0000 20 chr7:148684445-148684465 1.0000 20 chr3:124653629-124653649 1.0000 20 chr6:28834074-28834094 1.0000 20 chr6:26183916-26183936 1.0000 20 chr22:23396879-23396899 1.0000 20 chr4:86623299-86623319 1.0000 20 chr6:26044070-26044090 1.0000 20 chr8:109337910-109337930 1.0000 20 chr8:126237817-126237837 1.0000 20 chr10:135192076-13519209 1.0000 20 chr6:26033895-26033915 1.0000 20 chr8:123502165-123502185 1.0000 20 chr1:75214780-75214800 1.0000 20 chr14:70115673-70115693 1.0000 20 chr6:26383038-26383058 1.0000 20 chr19:893367-893387 1.0000 20 chr15:96390374-96390394 1.0000 20 chr14:73763338-73763358 1.0000 20 chr15:80202073-80202093 1.0000 20 chr17:68205613-68205633 1.0000 20 chr8:23021571-23021591 1.0000 20 chr6:140163164-140163184 1.0000 20 chrX:122492043-122492063 1.0000 20 chr7:148638471-148638491 1.0000 20 chr17:39835095-39835115 1.0000 20 chr21:46345378-46345398 1.0000 20 chr6:27782724-27782744 1.0000 20 chr1:149224225-149224245 1.0000 20 chr12:14927156-14927176 1.0000 20 chr2:88316153-88316173 1.0000 20 chr6:26273116-26273136 1.0000 20 chr1:212159149-212159169 1.0000 20 chr18:23747721-23747741 1.0000 20 chr6:27775819-27775839 1.0000 20 chr2:158007491-158007511 1.0000 20 chr1:147735653-147735673 1.0000 20 chr15:50302002-50302022 1.0000 20 chr1:246154049-246154069 1.0000 20 chr14:39735770-39735790 1.0000 20 chr6:109438751-109438771 1.0000 20 chr2:162762207-162762227 1.0000 20 chr11:18791613-18791633 1.0000 20 chr1:46049671-46049691 1.0000 20 chr8:103876401-103876421 1.0000 20 chr5:126084264-126084284 1.0000 20 chr2:165617970-165617990 1.0000 20 chr1:77402553-77402573 1.0000 20 chr14:32672586-32672606 1.0000 20 chr6:5507490-5507510 1.0000 20 chr15:68132487-68132507 1.0000 20 chr2:157394795-157394815 1.0000 20 chr6:26199627-26199647 1.0000 20 chr4:74469311-74469331 1.0000 20 chr11:116933989-11693400 1.0000 20 chr6:15683881-15683901 1.0000 20 chr4:170359435-170359455 1.0000 20 chr1:233809286-233809306 1.0000 20 chr5:14287272-14287292 1.0000 20 chr2:177861992-177862012 1.0000 20 chr3:67705924-67705944 1.0000 20 chr2:238907395-238907415 1.0000 20 chr7:116324019-116324039 1.0000 20 chr1:87082758-87082778 1.0000 20 chr11:55425736-55425756 1.0000 20 chr1:194776821-194776841 1.0000 20 chr9:19174575-19174595 1.0000 20 chr12:104301529-10430154 1.0000 20 chr16:86698320-86698340 1.0000 20 chr1:149858332-149858352 1.0000 20 chr17:18804362-18804382 1.0000 20 chr2:207226363-207226383 1.0000 20 chr9:35658109-35658129 1.0000 20 chr1:146556394-146556414 1.0000 20 chr6:15364256-15364276 1.0000 20 chr19:1021399-1021419 1.0000 20 chr4:156536454-156536474 1.0000 20 chr13:103783306-10378332 1.0000 20 chr1:210547699-210547719 1.0000 20 chr6:27100660-27100680 1.0000 20 chr1:180821247-180821267 1.0000 20 chr10:125532859-12553287 1.0000 20 chr6:119644130-119644150 1.0000 20 chr19:7192183-7192203 1.0000 20 chr15:45019122-45019142 1.0000 20 chr6:52860305-52860325 1.0000 20 chr12:90103467-90103487 1.0000 20 chr11:114495632-11449565 1.0000 20 chr8:9630947-9630967 1.0000 20 chr6:26251759-26251779 1.0000 20 chr6:133194263-133194283 1.0000 20 chr8:101734333-101734353 1.0000 20 chr6:31795463-31795483 1.0000 20 chr8:8353816-8353836 1.0000 20 chr6:154579362-154579382 1.0000 20 chr17:41438806-41438826 1.0000 20 chr11:107550138-10755015 1.0000 20 chr3:46249935-46249955 1.0000 20 chr4:36350324-36350344 1.0000 20 chr10:64933767-64933787 1.0000 20 chr8:11315524-11315544 1.0000 20 chr6:27806238-27806258 1.0000 20 chr19:39901937-39901957 1.0000 20 chr9:74164112-74164132 1.0000 20 chr6:26124264-26124284 1.0000 20 chr6:113964357-113964377 1.0000 20 chr5:53606511-53606531 1.0000 20 chr15:59775027-59775047 1.0000 20 chr6:26158191-26158211 1.0000 20 chr3:122084556-122084576 1.0000 20 chr4:39638592-39638612 1.0000 20 chr19:1269254-1269274 1.0000 20 chr11:67329749-67329769 1.0000 20 chr3:4534996-4535016 1.0000 20 chr17:36642341-36642361 1.0000 20 chr19:14126392-14126412 1.0000 20 chr20:10330987-10331007 1.0000 20 chr19:45982034-45982054 1.0000 20 chr11:61524371-61524391 1.0000 20 chr15:80310185-80310205 1.0000 20 chr12:40620194-40620214 1.0000 20 chr3:149160703-149160723 1.0000 20 chr10:90746483-90746503 1.0000 20 chr3:187546986-187547006 1.0000 20 chr17:46180515-46180535 1.0000 20 chr12:120972086-12097210 1.0000 20 chr14:93234712-93234732 1.0000 20 chr15:45848568-45848588 1.0000 20 chr15:92399095-92399115 1.0000 20 chr2:70121024-70121044 1.0000 20 chr18:67565083-67565103 1.0000 20 chr2:30454364-30454384 1.0000 20 chr1:31975007-31975027 1.0000 20 chr1:17055020-17055040 1.0000 20 chr11:63339712-63339732 1.0000 20 chr5:114545151-114545171 1.0000 20 chr1:45285767-45285787 1.0000 20 chr5:158525810-158525830 1.0000 20 chr3:90085078-90085098 1.0000 20 chr5:43040476-43040496 1.0000 20 chr1:147806974-147806994 1.0000 20 chr15:92401200-92401220 1.0000 20 chr6:27858631-27858651 1.0000 20 chr19:19431377-19431397 1.0000 20 chr17:33700663-33700683 1.0000 20 chr6:27840169-27840189 1.0000 20 chr1:82618450-82618470 1.0000 20 chr7:89872273-89872293 1.0000 20 chr3:72806272-72806292 1.0000 20 chr3:14733104-14733124 1.0000 20 chr13:29149526-29149546 1.0000 20 chr6:27833041-27833061 1.0000 20 chr9:110514323-110514343 1.0000 20 chr3:129035173-129035193 1.0000 20 chr6:52529160-52529180 1.0000 20 chr9:137029774-137029794 1.0000 20 chr11:62432732-62432752 1.0000 20 chr10:52020731-52020751 1.0000 20 chr6:27114743-27114763 1.0000 20 chr2:155393728-155393748 1.0000 20 chr19:42927826-42927846 1.0000 20 chr11:114488961-11448898 1.0000 20 chr19:49468522-49468542 1.0000 20 chr14:93049562-93049582 1.0000 20 chr8:33370916-33370936 1.0000 20 chr1:82693137-82693157 1.0000 20 chr7:44836206-44836226 1.0000 20 chr3:73498098-73498118 1.0000 20 chr12:14374208-14374228 1.0000 20 chr11:114483553-11448357 1.0000 20 chr12:9913516-9913536 1.0000 20 chr13:48861172-48861192 1.0000 20 chr7:37855771-37855791 1.0000 20 chr7:27123393-27123413 1.0000 20 chr1:58570844-58570864 1.0000 20 chr1:226187285-226187305 1.0000 20 chr1:45196909-45196929 1.0000 20 chr6:27777763-27777783 1.0000 20 chr16:30457231-30457251 1.0000 20 chr6:27791735-27791755 1.0000 20 chr6:143141221-143141241 1.0000 20 chr1:168479608-168479628 1.0000 20 chr19:13049321-13049341 1.0000 20 chr2:231501792-231501812 1.0000 20 chr5:122783965-122783985 1.0000 20 chr20:61371751-61371771 1.0000 20 chr2:145276877-145276897 1.0000 20 chr7:134595445-134595465 1.0000 20 chr20:50077600-50077620 1.0000 20 chr21:34757280-34757300 1.0000 20 chr2:25721130-25721150 1.0000 20 chr2:122288371-122288391 1.0000 20 chr6:109196203-109196223 1.0000 20 chr11:122932907-12293292 1.0000 20 chr1:234736424-234736444 1.0000 20 chr7:112090486-112090506 1.0000 20 chr14:76652830-76652850 1.0000 20 chr6:64282324-64282344 1.0000 20 chr6:26056710-26056730 1.0000 20 chr10:45474285-45474305 1.0000 20 chr3:87724101-87724121 1.0000 20 chr16:27285311-27285331 1.0000 20 chr1:247520990-247521010 1.0000 20 chr17:34430946-34430966 1.0000 20 chrX:41193384-41193404 1.0000 20 chr6:27861059-27861079 1.0000 20 chr11:114475053-11447507 1.0000 20 chr6:111195941-111195961 1.0000 20 chr9:30075620-30075640 1.0000 20 chr15:65593030-65593050 1.0000 20 chr1:111742894-111742914 1.0000 20 chr14:77411828-77411848 1.0000 20 chr19:7755856-7755876 1.0000 20 chr8:8869718-8869738 1.0000 20 chr3:152314048-152314068 1.0000 20 chr1:198610881-198610901 1.0000 20 chr15:77003914-77003934 1.0000 20 chr10:15183269-15183289 1.0000 20 chr9:69883167-69883187 1.0000 20 chr17:63911096-63911116 1.0000 20 chr4:87928134-87928154 1.0000 20 chr6:137981555-137981575 1.0000 20 chr18:59619565-59619585 1.0000 20 chr10:3827639-3827659 1.0000 20 chr5:124244888-124244908 1.0000 20 chr12:125412429-12541244 1.0000 20 chr1:17231578-17231598 1.0000 20 chr17:39845064-39845084 1.0000 20 chr17:56736768-56736788 1.0000 20 chr16:18812901-18812921 1.0000 20 chr7:82013489-82013509 1.0000 20 chr19:50850708-50850728 1.0000 20 chr10:104153925-10415394 1.0000 20 chr22:48494275-48494295 1.0000 20 chr1:11970067-11970087 1.0000 20 chr2:232573166-232573186 1.0000 20 chr1:70970265-70970285 1.0000 20 chr3:49449601-49449621 1.0000 20 chr22:43411342-43411362 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_NFATC3/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/NFATC3.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.28 C 0.225 G 0.219 T 0.275 Background letter frequencies (from file dataset with add-one prior applied): A 0.28 C 0.225 G 0.219 T 0.275 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GGGGGSTC MEME-1 width = 8 sites = 13 llr = 109 E-value = 2.8e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGGGSTC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :3::::11 pos.-specific C ::2::519 probability G 877aa5:: matrix T 2:1:::8: bits 2.2 ** 2.0 ** 1.8 ** * 1.5 * ** * Relative 1.3 * ** * Entropy 1.1 ******** (12.1 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGGGGGTC consensus AC C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGSTC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:50850708-50850728 2 6.83e-06 g ggggggtc tctttctctc chr11:55425736-55425756 8 1.38e-05 ggcagca gggggctc aacaa chr11:62432732-62432752 7 2.96e-05 CTCGGG GGCGGGTC CTCGGG chr6:31795463-31795483 3 2.96e-05 AA GGCGGGTC TCCACGACGA chr1:17231578-17231598 9 3.85e-05 AGGGCTAG GAGGGCTC AGGG chr1:147735653-147735673 11 3.85e-05 TCAGGGCTAG GAGGGCTC GG chr20:61371751-61371771 8 6.31e-05 AGGGTTG TGGGGCTC ATTCT chr8:123502165-123502185 2 7.77e-05 T GGGGGGCC AATGTTCAAA chr16:27285311-27285331 11 9.96e-05 TGACTCAGAG GACGGCTC AT chr6:52529160-52529180 11 1.08e-04 GTTTGGGCAA GGTGGGTC CG chr4:39638592-39638612 3 1.15e-04 aa gggggcac tactgTGTAG chr17:68205613-68205633 1 1.33e-04 . GGGGGGTA ACGTTTTTCT chr7:148660289-148660309 6 1.52e-04 TTTTG TAGGGGTC ATATAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGSTC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:50850708-50850728 6.8e-06 1_[+1]_11 chr11:55425736-55425756 1.4e-05 7_[+1]_5 chr11:62432732-62432752 3e-05 6_[+1]_6 chr6:31795463-31795483 3e-05 2_[+1]_10 chr1:17231578-17231598 3.9e-05 8_[+1]_4 chr1:147735653-147735673 3.9e-05 10_[+1]_2 chr20:61371751-61371771 6.3e-05 7_[+1]_5 chr8:123502165-123502185 7.8e-05 1_[+1]_11 chr16:27285311-27285331 0.0001 10_[+1]_2 chr6:52529160-52529180 0.00011 10_[+1]_2 chr4:39638592-39638612 0.00012 2_[+1]_10 chr17:68205613-68205633 0.00013 [+1]_12 chr7:148660289-148660309 0.00015 5_[+1]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGSTC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGGGSTC width=8 seqs=13 chr19:50850708-50850728 ( 2) GGGGGGTC 1 chr11:55425736-55425756 ( 8) GGGGGCTC 1 chr11:62432732-62432752 ( 7) GGCGGGTC 1 chr6:31795463-31795483 ( 3) GGCGGGTC 1 chr1:17231578-17231598 ( 9) GAGGGCTC 1 chr1:147735653-147735673 ( 11) GAGGGCTC 1 chr20:61371751-61371771 ( 8) TGGGGCTC 1 chr8:123502165-123502185 ( 2) GGGGGGCC 1 chr16:27285311-27285331 ( 11) GACGGCTC 1 chr6:52529160-52529180 ( 11) GGTGGGTC 1 chr4:39638592-39638612 ( 3) GGGGGCAC 1 chr17:68205613-68205633 ( 1) GGGGGGTA 1 chr7:148660289-148660309 ( 6) TAGGGGTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGSTC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.59397 E= 2.8e+001 -1035 -1035 195 -84 14 -1035 166 -1035 -1035 3 166 -184 -1035 -1035 219 -1035 -1035 -1035 219 -1035 -1035 103 129 -1035 -186 -155 -1035 162 -186 203 -1035 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGSTC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 2.8e+001 0.000000 0.000000 0.846154 0.153846 0.307692 0.000000 0.692308 0.000000 0.000000 0.230769 0.692308 0.076923 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.461538 0.538462 0.000000 0.076923 0.076923 0.000000 0.846154 0.076923 0.923077 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGSTC MEME-1 regular expression -------------------------------------------------------------------------------- G[GA][GC]GG[GC]TC -------------------------------------------------------------------------------- Time 2.48 secs. ******************************************************************************** ******************************************************************************** MOTIF CARAGTSC MEME-2 width = 8 sites = 14 llr = 115 E-value = 7.5e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CARAGTSC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :a69:::1 pos.-specific C a:::::56 probability G ::41a:3: matrix T :::::a23 bits 2.2 * * 2.0 * ** 1.8 ** ** 1.5 ** ** Relative 1.3 ** *** Entropy 1.1 ****** (11.8 bits) 0.9 ****** * 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAAAGTCC consensus G GT sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARAGTSC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:137981555-137981575 1 1.51e-05 . CAAAGTCC AGAATACCAT chr6:15683881-15683901 6 1.51e-05 AGGGA CAAAGTCC ACATACA chr6:109438751-109438771 7 1.51e-05 CAAGTT CAAAGTCC TGAGTT chr3:124653629-124653649 9 1.51e-05 TTCGGGTA CAAAGTCC AGTC chr15:80202073-80202093 7 5.30e-05 ttttta cagagtgc tgattg chr14:77411828-77411848 8 8.98e-05 TAAGGGA CAAAGTTC AATCA chr3:46249935-46249955 4 8.98e-05 GGA CAAAGTTC TTCTTTTTG chr1:58570844-58570864 1 1.19e-04 . CAGAGTCT AAAGGTCACA chr14:93234712-93234732 4 1.30e-04 TGA CAAGGTCC AACCCCAGA chr13:48861172-48861192 1 1.48e-04 . CAAAGTGT TTGTTTTATT chr18:59619565-59619585 1 1.71e-04 . CAGAGTGT GGGCTGCTTA chr21:30449312-30449332 12 2.14e-04 gagctagaca cagggtgc t chr12:9913516-9913536 1 2.51e-04 . CAGAGTTT ATACTCCCTG chr4:36350324-36350344 6 2.51e-04 AGGTA CAAAGTCA GCCTTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARAGTSC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:137981555-137981575 1.5e-05 [+2]_12 chr6:15683881-15683901 1.5e-05 5_[+2]_7 chr6:109438751-109438771 1.5e-05 6_[+2]_6 chr3:124653629-124653649 1.5e-05 8_[+2]_4 chr15:80202073-80202093 5.3e-05 6_[+2]_6 chr14:77411828-77411848 9e-05 7_[+2]_5 chr3:46249935-46249955 9e-05 3_[+2]_9 chr1:58570844-58570864 0.00012 [+2]_12 chr14:93234712-93234732 0.00013 3_[+2]_9 chr13:48861172-48861192 0.00015 [+2]_12 chr18:59619565-59619585 0.00017 [+2]_12 chr21:30449312-30449332 0.00021 11_[+2]_1 chr12:9913516-9913536 0.00025 [+2]_12 chr4:36350324-36350344 0.00025 5_[+2]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARAGTSC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CARAGTSC width=8 seqs=14 chr6:137981555-137981575 ( 1) CAAAGTCC 1 chr6:15683881-15683901 ( 6) CAAAGTCC 1 chr6:109438751-109438771 ( 7) CAAAGTCC 1 chr3:124653629-124653649 ( 9) CAAAGTCC 1 chr15:80202073-80202093 ( 7) CAGAGTGC 1 chr14:77411828-77411848 ( 8) CAAAGTTC 1 chr3:46249935-46249955 ( 4) CAAAGTTC 1 chr1:58570844-58570864 ( 1) CAGAGTCT 1 chr14:93234712-93234732 ( 4) CAAGGTCC 1 chr13:48861172-48861192 ( 1) CAAAGTGT 1 chr18:59619565-59619585 ( 1) CAGAGTGT 1 chr21:30449312-30449332 ( 12) CAGGGTGC 1 chr12:9913516-9913536 ( 1) CAGAGTTT 1 chr4:36350324-36350344 ( 6) CAAAGTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARAGTSC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.4605 E= 7.5e+001 -1045 215 -1045 -1045 184 -1045 -1045 -1045 120 -1045 70 -1045 161 -1045 -62 -1045 -1045 -1045 219 -1045 -1045 -1045 -1045 186 -1045 115 38 -36 -197 151 -1045 5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARAGTSC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 7.5e+001 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.642857 0.000000 0.357143 0.000000 0.857143 0.000000 0.142857 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.285714 0.214286 0.071429 0.642857 0.000000 0.285714 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARAGTSC MEME-2 regular expression -------------------------------------------------------------------------------- CA[AG]AGT[CGT][CT] -------------------------------------------------------------------------------- Time 3.76 secs. ******************************************************************************** ******************************************************************************** MOTIF GGACTTTG MEME-3 width = 8 sites = 10 llr = 91 E-value = 6.9e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGACTTTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :2a::::2 pos.-specific C :1:9:::: probability G a6:::::8 matrix T :1:1aaa: bits 2.2 * 2.0 * *** 1.8 * ***** 1.5 * ***** Relative 1.3 * ****** Entropy 1.1 * ****** (13.2 bits) 0.9 * ****** 0.7 * ****** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGACTTTG consensus A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGACTTTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr15:45848568-45848588 12 1.38e-05 CAGGCAATCT GGACTTTG C chr19:14126392-14126412 7 1.38e-05 cacatg ggactttg ccctgc chr16:86698320-86698340 3 1.38e-05 GA GGACTTTG CTCCATGACT chr3:122084556-122084576 1 3.14e-05 . GAACTTTG CTCTCCACTA chr10:135192076-13519209 11 3.14e-05 CTCGGCTTCT GAACTTTG TA chr11:18791613-18791633 11 4.90e-05 TTTAAGGAAT GGACTTTA GA chr8:109337910-109337930 3 4.90e-05 ct ggacttta gactctcctc chr1:234736424-234736444 5 6.31e-05 GAAA GCACTTTG GACTTCGG chr4:74469311-74469331 4 8.04e-05 TTT GTACTTTG TGGCCTGAA chr1:149859666-149859686 1 9.72e-05 . GGATTTTG TAAGTATCTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGACTTTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:45848568-45848588 1.4e-05 11_[+3]_1 chr19:14126392-14126412 1.4e-05 6_[+3]_6 chr16:86698320-86698340 1.4e-05 2_[+3]_10 chr3:122084556-122084576 3.1e-05 [+3]_12 chr10:135192076-13519209 3.1e-05 10_[+3]_2 chr11:18791613-18791633 4.9e-05 10_[+3]_2 chr8:109337910-109337930 4.9e-05 2_[+3]_10 chr1:234736424-234736444 6.3e-05 4_[+3]_8 chr4:74469311-74469331 8e-05 3_[+3]_9 chr1:149859666-149859686 9.7e-05 [+3]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGACTTTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGACTTTG width=8 seqs=10 chr15:45848568-45848588 ( 12) GGACTTTG 1 chr19:14126392-14126412 ( 7) GGACTTTG 1 chr16:86698320-86698340 ( 3) GGACTTTG 1 chr3:122084556-122084576 ( 1) GAACTTTG 1 chr10:135192076-13519209 ( 11) GAACTTTG 1 chr11:18791613-18791633 ( 11) GGACTTTA 1 chr8:109337910-109337930 ( 3) GGACTTTA 1 chr1:234736424-234736444 ( 5) GCACTTTG 1 chr4:74469311-74469331 ( 4) GTACTTTG 1 chr1:149859666-149859686 ( 1) GGATTTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGACTTTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.5921 E= 6.9e+000 -997 -997 219 -997 -48 -117 145 -146 184 -997 -997 -997 -997 200 -997 -146 -997 -997 -997 186 -997 -997 -997 186 -997 -997 -997 186 -48 -997 187 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGACTTTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 6.9e+000 0.000000 0.000000 1.000000 0.000000 0.200000 0.100000 0.600000 0.100000 1.000000 0.000000 0.000000 0.000000 0.000000 0.900000 0.000000 0.100000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.200000 0.000000 0.800000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGACTTTG MEME-3 regular expression -------------------------------------------------------------------------------- G[GA]ACTTT[GA] -------------------------------------------------------------------------------- Time 5.31 secs. ******************************************************************************** ******************************************************************************** MOTIF YCTTTTTC MEME-4 width = 8 sites = 19 llr = 140 E-value = 1.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif YCTTTTTC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::1:::: pos.-specific C 5a::3118 probability G 1:11:1:1 matrix T 5:987991 bits 2.2 * 2.0 * 1.8 * 1.5 ** Relative 1.3 ** *** Entropy 1.1 ** **** (10.6 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCTTTTTC consensus T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTTTTTC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:11970067-11970087 13 1.79e-05 TTGACTTCTG CCTTTTTC chr5:126084264-126084284 5 3.98e-05 tctt tctttttc tttctctt chr15:96390374-96390394 7 3.98e-05 tctctc tctttttc tttctt chr6:26044070-26044090 7 3.98e-05 ATGTTA TCTTTTTC TATTGG chr17:36642341-36642361 2 5.45e-05 T CCTTCTTC CGAAAGCTGC chr1:87082758-87082778 5 5.45e-05 gtca ccttcttc acaaggca chr6:27791735-27791755 7 1.20e-04 TTCCCC CCTATTTC GGTTTG chr3:90085078-90085098 7 1.20e-04 GTGTTC CCTATTTC ACACCT chr6:140163164-140163184 2 1.54e-04 T TCTGTTTC ACTTCTCTTC chr4:87928134-87928154 13 2.12e-04 AGAGGCAATT TCTTTTCC chr17:34430946-34430966 5 2.12e-04 TTCA TCTTTTCC TCTGGGGT chr3:46249935-46249955 13 2.33e-04 ACAAAGTTCT TCTTTTTG chr21:34757280-34757300 4 2.74e-04 GGT CCTTTGTC TTCTCTGTC chr9:35658109-35658129 1 2.74e-04 . CCGTTTTC GGGCATAACT chr17:63911096-63911116 5 3.79e-04 cttc ccttcttg gcaacacc chr2:231501792-231501812 4 3.79e-04 cca tctgcttc tttgaactt chr19:50850708-50850728 10 4.33e-04 gggggggtc tctttctc tct chr17:56736768-56736788 2 4.33e-04 C GCTTCTTC GTATGACACA chr7:148680752-148680772 3 4.33e-04 TT CCTTTTTT TTAGCTCCTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTTTTTC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:11970067-11970087 1.8e-05 12_[+4] chr5:126084264-126084284 4e-05 4_[+4]_8 chr15:96390374-96390394 4e-05 6_[+4]_6 chr6:26044070-26044090 4e-05 6_[+4]_6 chr17:36642341-36642361 5.4e-05 1_[+4]_11 chr1:87082758-87082778 5.4e-05 4_[+4]_8 chr6:27791735-27791755 0.00012 6_[+4]_6 chr3:90085078-90085098 0.00012 6_[+4]_6 chr6:140163164-140163184 0.00015 1_[+4]_11 chr4:87928134-87928154 0.00021 12_[+4] chr17:34430946-34430966 0.00021 4_[+4]_8 chr3:46249935-46249955 0.00023 12_[+4] chr21:34757280-34757300 0.00027 3_[+4]_9 chr9:35658109-35658129 0.00027 [+4]_12 chr17:63911096-63911116 0.00038 4_[+4]_8 chr2:231501792-231501812 0.00038 3_[+4]_9 chr19:50850708-50850728 0.00043 9_[+4]_3 chr17:56736768-56736788 0.00043 1_[+4]_11 chr7:148680752-148680772 0.00043 2_[+4]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTTTTTC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YCTTTTTC width=8 seqs=19 chr1:11970067-11970087 ( 13) CCTTTTTC 1 chr5:126084264-126084284 ( 5) TCTTTTTC 1 chr15:96390374-96390394 ( 7) TCTTTTTC 1 chr6:26044070-26044090 ( 7) TCTTTTTC 1 chr17:36642341-36642361 ( 2) CCTTCTTC 1 chr1:87082758-87082778 ( 5) CCTTCTTC 1 chr6:27791735-27791755 ( 7) CCTATTTC 1 chr3:90085078-90085098 ( 7) CCTATTTC 1 chr6:140163164-140163184 ( 2) TCTGTTTC 1 chr4:87928134-87928154 ( 13) TCTTTTCC 1 chr17:34430946-34430966 ( 5) TCTTTTCC 1 chr3:46249935-46249955 ( 13) TCTTTTTG 1 chr21:34757280-34757300 ( 4) CCTTTGTC 1 chr9:35658109-35658129 ( 1) CCGTTTTC 1 chr17:63911096-63911116 ( 5) CCTTCTTG 1 chr2:231501792-231501812 ( 4) TCTGCTTC 1 chr19:50850708-50850728 ( 10) TCTTTCTC 1 chr17:56736768-56736788 ( 2) GCTTCTTC 1 chr7:148680752-148680772 ( 3) CCTTTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTTTTTC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.60572 E= 1.5e+003 -1089 107 -206 78 -1089 215 -1089 -1089 -1089 -1089 -206 178 -141 -1089 -106 152 -1089 22 -1089 142 -1089 -210 -206 170 -1089 -110 -1089 170 -1089 190 -106 -238 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTTTTTC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 1.5e+003 0.000000 0.473684 0.052632 0.473684 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.052632 0.947368 0.105263 0.000000 0.105263 0.789474 0.000000 0.263158 0.000000 0.736842 0.000000 0.052632 0.052632 0.894737 0.000000 0.105263 0.000000 0.894737 0.000000 0.842105 0.105263 0.052632 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTTTTTC MEME-4 regular expression -------------------------------------------------------------------------------- [CT]CTT[TC]TTC -------------------------------------------------------------------------------- Time 6.21 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCYGGCG MEME-5 width = 8 sites = 2 llr = 23 E-value = 3.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCYGGCG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::a5::a: probability G aa::aa:a matrix T :::5:::: bits 2.2 *** **** 2.0 *** **** 1.8 *** **** 1.5 *** **** Relative 1.3 *** **** Entropy 1.1 ******** (16.2 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGCCGGCG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCYGGCG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:49468522-49468542 1 5.74e-06 . GGCCGGCG CACCATAAAA chr1:226187285-226187305 10 1.28e-05 GCTATAAAA GGCTGGCG CTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCYGGCG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:49468522-49468542 5.7e-06 [+5]_12 chr1:226187285-226187305 1.3e-05 9_[+5]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCYGGCG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCYGGCG width=8 seqs=2 chr19:49468522-49468542 ( 1) GGCCGGCG 1 chr1:226187285-226187305 ( 10) GGCTGGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCYGGCG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.81663 E= 3.9e+003 -765 -765 218 -765 -765 -765 218 -765 -765 214 -765 -765 -765 115 -765 86 -765 -765 218 -765 -765 -765 218 -765 -765 214 -765 -765 -765 -765 218 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCYGGCG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.9e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCYGGCG MEME-5 regular expression -------------------------------------------------------------------------------- GGC[CT]GGCG -------------------------------------------------------------------------------- Time 6.95 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:10232124-10232144 3.76e-02 20 chr1:17222347-17222367 6.57e-01 20 chr1:149783956-149783976 4.30e-01 20 chr21:30449312-30449332 2.02e-01 20 chr5:77014889-77014909 7.24e-01 20 chr1:149785334-149785354 9.20e-01 20 chr1:228645664-228645684 4.32e-01 20 chr7:148680752-148680772 1.56e-01 20 chr7:148660289-148660309 9.09e-02 20 chr10:14227381-14227401 7.99e-01 20 chr1:149859666-149859686 1.07e-01 [+3(9.72e-05)]_12 chr10:125532101-12553212 4.24e-01 20 chr7:148684445-148684465 1.00e+00 20 chr3:124653629-124653649 9.04e-03 8_[+2(1.51e-05)]_4 chr6:28834074-28834094 7.21e-01 20 chr6:26183916-26183936 7.42e-01 20 chr22:23396879-23396899 8.76e-01 20 chr4:86623299-86623319 9.81e-01 20 chr6:26044070-26044090 8.86e-02 6_[+4(3.98e-05)]_6 chr8:109337910-109337930 3.64e-02 2_[+3(4.90e-05)]_10 chr8:126237817-126237837 8.86e-01 20 chr10:135192076-13519209 3.00e-03 10_[+3(3.14e-05)]_2 chr6:26033895-26033915 8.77e-01 20 chr8:123502165-123502185 8.96e-04 1_[+1(7.77e-05)]_11 chr1:75214780-75214800 8.36e-01 20 chr14:70115673-70115693 6.41e-01 20 chr6:26383038-26383058 1.00e+00 20 chr19:893367-893387 7.32e-01 20 chr15:96390374-96390394 9.68e-02 6_[+4(3.98e-05)]_6 chr14:73763338-73763358 9.79e-01 20 chr15:80202073-80202093 2.10e-02 6_[+2(5.30e-05)]_6 chr17:68205613-68205633 7.76e-03 20 chr8:23021571-23021591 9.54e-01 20 chr6:140163164-140163184 1.64e-01 20 chrX:122492043-122492063 3.37e-01 20 chr7:148638471-148638491 4.06e-01 20 chr17:39835095-39835115 7.00e-01 20 chr21:46345378-46345398 9.82e-01 20 chr6:27782724-27782744 4.64e-01 20 chr1:149224225-149224245 5.50e-01 20 chr12:14927156-14927176 9.02e-01 20 chr2:88316153-88316173 3.37e-01 20 chr6:26273116-26273136 9.77e-01 20 chr1:212159149-212159169 8.99e-01 20 chr18:23747721-23747741 1.19e-01 20 chr6:27775819-27775839 9.38e-01 20 chr2:158007491-158007511 5.73e-01 20 chr1:147735653-147735673 3.32e-03 10_[+1(3.85e-05)]_2 chr15:50302002-50302022 3.67e-02 20 chr1:246154049-246154069 2.28e-01 20 chr14:39735770-39735790 6.30e-01 20 chr6:109438751-109438771 1.01e-02 6_[+2(1.51e-05)]_6 chr2:162762207-162762227 7.04e-01 20 chr11:18791613-18791633 4.52e-02 10_[+3(4.90e-05)]_2 chr1:46049671-46049691 2.57e-02 20 chr8:103876401-103876421 1.64e-01 20 chr5:126084264-126084284 9.89e-02 4_[+4(3.98e-05)]_8 chr2:165617970-165617990 9.64e-01 20 chr1:77402553-77402573 9.20e-01 20 chr14:32672586-32672606 9.60e-01 20 chr6:5507490-5507510 9.16e-01 20 chr15:68132487-68132507 8.22e-01 20 chr2:157394795-157394815 9.50e-01 20 chr6:26199627-26199647 7.10e-01 20 chr4:74469311-74469331 7.45e-03 3_[+3(8.04e-05)]_9 chr11:116933989-11693400 9.99e-01 20 chr6:15683881-15683901 2.31e-02 5_[+2(1.51e-05)]_7 chr4:170359435-170359455 3.22e-01 20 chr1:233809286-233809306 9.29e-01 20 chr5:14287272-14287292 7.45e-01 20 chr2:177861992-177862012 2.96e-01 20 chr3:67705924-67705944 7.67e-01 20 chr2:238907395-238907415 2.47e-01 20 chr7:116324019-116324039 8.05e-01 20 chr1:87082758-87082778 8.52e-02 4_[+4(5.45e-05)]_8 chr11:55425736-55425756 1.14e-03 7_[+1(1.38e-05)]_5 chr1:194776821-194776841 2.76e-01 20 chr9:19174575-19174595 5.44e-01 20 chr12:104301529-10430154 9.66e-01 20 chr16:86698320-86698340 7.05e-03 2_[+3(1.38e-05)]_10 chr1:149858332-149858352 5.39e-01 20 chr17:18804362-18804382 6.16e-01 20 chr2:207226363-207226383 1.00e+00 20 chr9:35658109-35658129 5.62e-02 20 chr1:146556394-146556414 9.14e-01 20 chr6:15364256-15364276 4.65e-01 20 chr19:1021399-1021419 9.07e-01 20 chr4:156536454-156536474 2.48e-01 20 chr13:103783306-10378332 8.24e-01 20 chr1:210547699-210547719 4.81e-01 20 chr6:27100660-27100680 4.90e-01 20 chr1:180821247-180821267 9.69e-01 20 chr10:125532859-12553287 4.43e-01 20 chr6:119644130-119644150 5.52e-02 20 chr19:7192183-7192203 1.00e+00 20 chr15:45019122-45019142 3.84e-01 20 chr6:52860305-52860325 4.75e-01 20 chr12:90103467-90103487 3.47e-01 20 chr11:114495632-11449565 7.91e-01 20 chr8:9630947-9630967 6.42e-01 20 chr6:26251759-26251779 3.51e-01 20 chr6:133194263-133194283 5.52e-01 20 chr8:101734333-101734353 5.74e-01 20 chr6:31795463-31795483 4.96e-03 2_[+1(2.96e-05)]_10 chr8:8353816-8353836 5.16e-01 20 chr6:154579362-154579382 9.22e-01 20 chr17:41438806-41438826 3.77e-01 20 chr11:107550138-10755015 9.94e-01 20 chr3:46249935-46249955 1.75e-03 3_[+2(8.98e-05)]_9 chr4:36350324-36350344 9.65e-02 20 chr10:64933767-64933787 7.62e-01 20 chr8:11315524-11315544 6.46e-01 20 chr6:27806238-27806258 2.76e-01 20 chr19:39901937-39901957 7.27e-01 20 chr9:74164112-74164132 7.74e-01 20 chr6:26124264-26124284 7.55e-01 20 chr6:113964357-113964377 6.73e-01 20 chr5:53606511-53606531 4.33e-02 20 chr15:59775027-59775047 1.07e-01 20 chr6:26158191-26158211 9.95e-01 20 chr3:122084556-122084576 5.04e-02 [+3(3.14e-05)]_12 chr4:39638592-39638612 2.56e-02 20 chr19:1269254-1269274 9.90e-02 20 chr11:67329749-67329769 2.12e-01 20 chr3:4534996-4535016 6.43e-01 20 chr17:36642341-36642361 4.29e-02 1_[+4(5.45e-05)]_11 chr19:14126392-14126412 3.25e-03 6_[+3(1.38e-05)]_6 chr20:10330987-10331007 7.03e-01 20 chr19:45982034-45982054 3.12e-02 20 chr11:61524371-61524391 5.24e-01 20 chr15:80310185-80310205 6.44e-01 20 chr12:40620194-40620214 5.25e-01 20 chr3:149160703-149160723 9.90e-01 20 chr10:90746483-90746503 8.65e-01 20 chr3:187546986-187547006 8.49e-01 20 chr17:46180515-46180535 3.53e-01 20 chr12:120972086-12097210 7.58e-01 20 chr14:93234712-93234732 8.92e-02 20 chr15:45848568-45848588 1.59e-02 11_[+3(1.38e-05)]_1 chr15:92399095-92399115 2.05e-01 20 chr2:70121024-70121044 3.32e-01 20 chr18:67565083-67565103 2.43e-02 20 chr2:30454364-30454384 4.19e-01 20 chr1:31975007-31975027 4.85e-01 20 chr1:17055020-17055040 7.90e-01 20 chr11:63339712-63339732 9.96e-01 20 chr5:114545151-114545171 3.69e-01 20 chr1:45285767-45285787 6.99e-01 20 chr5:158525810-158525830 9.99e-01 20 chr3:90085078-90085098 9.68e-02 20 chr5:43040476-43040496 7.74e-01 20 chr1:147806974-147806994 8.70e-01 20 chr15:92401200-92401220 9.54e-01 20 chr6:27858631-27858651 8.47e-01 20 chr19:19431377-19431397 4.80e-01 20 chr17:33700663-33700683 6.30e-01 20 chr6:27840169-27840189 1.81e-01 20 chr1:82618450-82618470 8.25e-01 20 chr7:89872273-89872293 8.31e-01 20 chr3:72806272-72806292 3.70e-01 20 chr3:14733104-14733124 7.79e-01 20 chr13:29149526-29149546 3.38e-01 20 chr6:27833041-27833061 7.21e-01 20 chr9:110514323-110514343 5.47e-01 20 chr3:129035173-129035193 8.31e-01 20 chr6:52529160-52529180 1.14e-02 20 chr9:137029774-137029794 9.53e-01 20 chr11:62432732-62432752 3.68e-03 6_[+1(2.96e-05)]_6 chr10:52020731-52020751 1.65e-01 20 chr6:27114743-27114763 1.00e+00 20 chr2:155393728-155393748 8.10e-01 20 chr19:42927826-42927846 3.04e-01 20 chr11:114488961-11448898 4.53e-01 20 chr19:49468522-49468542 3.93e-03 [+5(5.74e-06)]_12 chr14:93049562-93049582 3.00e-01 20 chr8:33370916-33370936 8.68e-01 20 chr1:82693137-82693157 8.89e-01 20 chr7:44836206-44836226 4.88e-01 20 chr3:73498098-73498118 2.37e-01 20 chr12:14374208-14374228 7.25e-01 20 chr11:114483553-11448357 6.28e-01 20 chr12:9913516-9913536 5.85e-02 20 chr13:48861172-48861192 7.48e-02 20 chr7:37855771-37855791 3.22e-01 20 chr7:27123393-27123413 5.26e-02 20 chr1:58570844-58570864 7.80e-02 20 chr1:226187285-226187305 9.27e-03 9_[+5(1.28e-05)]_3 chr1:45196909-45196929 4.53e-01 20 chr6:27777763-27777783 4.19e-01 20 chr16:30457231-30457251 6.19e-01 20 chr6:27791735-27791755 9.73e-02 20 chr6:143141221-143141241 9.06e-01 20 chr1:168479608-168479628 8.03e-02 20 chr19:13049321-13049341 6.56e-01 20 chr2:231501792-231501812 1.31e-01 20 chr5:122783965-122783985 2.25e-01 20 chr20:61371751-61371771 1.68e-02 7_[+1(6.31e-05)]_5 chr2:145276877-145276897 3.59e-01 20 chr7:134595445-134595465 9.51e-01 20 chr20:50077600-50077620 5.40e-01 20 chr21:34757280-34757300 1.94e-02 20 chr2:25721130-25721150 9.40e-01 20 chr2:122288371-122288391 2.41e-01 20 chr6:109196203-109196223 2.73e-01 20 chr11:122932907-12293292 3.44e-01 20 chr1:234736424-234736444 1.17e-02 4_[+3(6.31e-05)]_8 chr7:112090486-112090506 2.19e-01 20 chr14:76652830-76652850 1.17e-01 20 chr6:64282324-64282344 2.67e-02 20 chr6:26056710-26056730 1.37e-01 20 chr10:45474285-45474305 8.04e-01 20 chr3:87724101-87724121 5.91e-01 20 chr16:27285311-27285331 3.16e-03 10_[+1(9.96e-05)]_2 chr1:247520990-247521010 5.95e-01 20 chr17:34430946-34430966 9.93e-02 20 chrX:41193384-41193404 4.02e-01 20 chr6:27861059-27861079 2.51e-01 20 chr11:114475053-11447507 8.03e-01 20 chr6:111195941-111195961 1.82e-01 20 chr9:30075620-30075640 1.57e-01 20 chr15:65593030-65593050 1.51e-01 20 chr1:111742894-111742914 2.46e-01 20 chr14:77411828-77411848 2.45e-02 7_[+2(8.98e-05)]_5 chr19:7755856-7755876 1.40e-01 20 chr8:8869718-8869738 9.43e-01 20 chr3:152314048-152314068 9.84e-01 20 chr1:198610881-198610901 6.04e-01 20 chr15:77003914-77003934 8.18e-01 20 chr10:15183269-15183289 2.35e-01 20 chr9:69883167-69883187 9.34e-01 20 chr17:63911096-63911116 2.00e-01 20 chr4:87928134-87928154 1.39e-02 20 chr6:137981555-137981575 5.08e-02 [+2(1.51e-05)]_12 chr18:59619565-59619585 8.74e-03 20 chr10:3827639-3827659 2.60e-01 20 chr5:124244888-124244908 9.68e-01 20 chr12:125412429-12541244 7.09e-01 20 chr1:17231578-17231598 9.04e-03 8_[+1(3.85e-05)]_4 chr17:39845064-39845084 2.43e-01 20 chr17:56736768-56736788 1.36e-01 20 chr16:18812901-18812921 3.18e-02 20 chr7:82013489-82013509 6.82e-01 20 chr19:50850708-50850728 1.84e-04 1_[+1(6.83e-06)]_11 chr10:104153925-10415394 4.49e-03 20 chr22:48494275-48494295 9.17e-01 20 chr1:11970067-11970087 2.61e-02 12_[+4(1.79e-05)] chr2:232573166-232573186 1.80e-01 20 chr1:70970265-70970285 8.79e-01 20 chr3:49449601-49449621 8.71e-02 20 chr22:43411342-43411362 6.33e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n04.farnam.hpc.yale.internal ********************************************************************************