******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/NBN.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr19:59055580-59055600 1.0000 20 chr1:243265064-243265084 1.0000 20 chr1:10071-10091 1.0000 20 chr7:64541729-64541749 1.0000 20 chr4:119512854-119512874 1.0000 20 chr7:140396462-140396482 1.0000 20 chr2:96068441-96068461 1.0000 20 chr7:65235855-65235875 1.0000 20 chr14:68086471-68086491 1.0000 20 chr7:140624877-140624897 1.0000 20 chr13:49821997-49822017 1.0000 20 chr2:19548143-19548163 1.0000 20 chr5:11571-11591 1.0000 20 chr2:74781560-74781580 1.0000 20 chr16:88658242-88658262 1.0000 20 chr12:64616333-64616353 1.0000 20 chr1:224180340-224180360 1.0000 20 chr3:194871535-194871555 1.0000 20 chr14:69260183-69260203 1.0000 20 chr14:88851962-88851982 1.0000 20 chr6:139456111-139456131 1.0000 20 chr7:45808656-45808676 1.0000 20 chr19:50979543-50979563 1.0000 20 chr20:46102339-46102359 1.0000 20 chr19:56015289-56015309 1.0000 20 chr11:77185454-77185474 1.0000 20 chr8:23386263-23386283 1.0000 20 chr7:100464945-100464965 1.0000 20 chr9:111696391-111696411 1.0000 20 chr8:38627447-38627467 1.0000 20 chr7:65958560-65958580 1.0000 20 chr8:21967248-21967268 1.0000 20 chr19:57831833-57831853 1.0000 20 chr18:2655164-2655184 1.0000 20 chr20:47537965-47537985 1.0000 20 chr19:46009830-46009850 1.0000 20 chr1:714091-714111 1.0000 20 chr14:50053226-50053246 1.0000 20 chr19:47616950-47616970 1.0000 20 chr16:21946488-21946508 1.0000 20 chr7:124569945-124569965 1.0000 20 chr3:185000654-185000674 1.0000 20 chr3:154042325-154042345 1.0000 20 chr3:158288890-158288910 1.0000 20 chr19:9546266-9546286 1.0000 20 chr19:50862239-50862259 1.0000 20 chr15:42840970-42840990 1.0000 20 chr1:201405072-201405092 1.0000 20 chr19:3035710-3035730 1.0000 20 chr7:44646103-44646123 1.0000 20 chr19:36103586-36103606 1.0000 20 chr2:96676259-96676279 1.0000 20 chr4:17578698-17578718 1.0000 20 chr8:141468198-141468218 1.0000 20 chr6:86352895-86352915 1.0000 20 chr1:936263-936283 1.0000 20 chr16:27561380-27561400 1.0000 20 chr16:81041057-81041077 1.0000 20 chr3:134571944-134571964 1.0000 20 chr17:4046960-4046980 1.0000 20 chr2:198152158-198152178 1.0000 20 chr19:6532538-6532558 1.0000 20 chr20:37626358-37626378 1.0000 20 chr2:28114132-28114152 1.0000 20 chr4:170541657-170541677 1.0000 20 chr9:86323117-86323137 1.0000 20 chr16:66637965-66637985 1.0000 20 chr11:95523569-95523589 1.0000 20 chr5:96143846-96143866 1.0000 20 chr6:44355198-44355218 1.0000 20 chr7:66309994-66310014 1.0000 20 chr10:111971059-11197107 1.0000 20 chr6:139613160-139613180 1.0000 20 chr12:120729945-12072996 1.0000 20 chr19:12896100-12896120 1.0000 20 chr17:18528990-18529010 1.0000 20 chr10:70988703-70988723 1.0000 20 chr19:42787520-42787540 1.0000 20 chr16:11171850-11171870 1.0000 20 chr16:85045206-85045226 1.0000 20 chr14:32030592-32030612 1.0000 20 chr2:197791689-197791709 1.0000 20 chr6:53213778-53213798 1.0000 20 chr8:42195983-42196003 1.0000 20 chr7:3018145-3018165 1.0000 20 chr1:109289224-109289244 1.0000 20 chr17:79093581-79093601 1.0000 20 chr17:7835507-7835527 1.0000 20 chr19:19772711-19772731 1.0000 20 chr12:56366904-56366924 1.0000 20 chr3:196189947-196189967 1.0000 20 chr14:105219441-10521946 1.0000 20 chr7:23571673-23571693 1.0000 20 chr11:6633566-6633586 1.0000 20 chr7:129592789-129592809 1.0000 20 chr17:40829306-40829326 1.0000 20 chr7:137687001-137687021 1.0000 20 chr9:87324855-87324875 1.0000 20 chr1:28099542-28099562 1.0000 20 chr2:243153862-243153882 1.0000 20 chrX:9979649-9979669 1.0000 20 chr16:85605806-85605826 1.0000 20 chr6:31939759-31939779 1.0000 20 chr11:108535561-10853558 1.0000 20 chr21:45632069-45632089 1.0000 20 chr15:78177415-78177435 1.0000 20 chr17:80231473-80231493 1.0000 20 chr19:57791799-57791819 1.0000 20 chr22:20850578-20850598 1.0000 20 chr1:12212229-12212249 1.0000 20 chr15:72523035-72523055 1.0000 20 chr10:124740071-12474009 1.0000 20 chrX:7895504-7895524 1.0000 20 chr2:38265255-38265275 1.0000 20 chr19:56826015-56826035 1.0000 20 chr17:1470128-1470148 1.0000 20 chr5:99870989-99871009 1.0000 20 chrX:15693473-15693493 1.0000 20 chr15:76016331-76016351 1.0000 20 chr6:37400950-37400970 1.0000 20 chr6:44228553-44228573 1.0000 20 chr6:34641676-34641696 1.0000 20 chrX:64914937-64914957 1.0000 20 chr4:120375850-120375870 1.0000 20 chr8:101964583-101964603 1.0000 20 chr18:33647519-33647539 1.0000 20 chr2:219745082-219745102 1.0000 20 chr9:114790747-114790767 1.0000 20 chr2:74259540-74259560 1.0000 20 chr19:47987442-47987462 1.0000 20 chr10:99496875-99496895 1.0000 20 chr14:103571582-10357160 1.0000 20 chr9:130746396-130746416 1.0000 20 chr19:48828690-48828710 1.0000 20 chr11:67204074-67204094 1.0000 20 chr6:26342230-26342250 1.0000 20 chr19:54889938-54889958 1.0000 20 chr9:125027145-125027165 1.0000 20 chr16:86588847-86588867 1.0000 20 chr1:228296989-228297009 1.0000 20 chr1:40840290-40840310 1.0000 20 chr8:38626333-38626353 1.0000 20 chr7:6413543-6413563 1.0000 20 chrX:40944253-40944273 1.0000 20 chr6:32164334-32164354 1.0000 20 chr5:150992480-150992500 1.0000 20 chr6:29617933-29617953 1.0000 20 chr12:121454300-12145432 1.0000 20 chr19:57874846-57874866 1.0000 20 chr17:3814599-3814619 1.0000 20 chr19:33237738-33237758 1.0000 20 chr17:33914269-33914289 1.0000 20 chr4:113558062-113558082 1.0000 20 chr18:77439743-77439763 1.0000 20 chr17:38136769-38136789 1.0000 20 chr14:23388160-23388180 1.0000 20 chr17:66508338-66508358 1.0000 20 chr1:169863421-169863441 1.0000 20 chr6:30028963-30028983 1.0000 20 chr9:77643441-77643461 1.0000 20 chr6:236062-236082 1.0000 20 chr21:43430367-43430387 1.0000 20 chr1:156698675-156698695 1.0000 20 chr17:25621086-25621106 1.0000 20 chr12:100660893-10066091 1.0000 20 chr18:2571458-2571478 1.0000 20 chr2:37194118-37194138 1.0000 20 chr2:8144597-8144617 1.0000 20 chr3:107941324-107941344 1.0000 20 chr6:32158106-32158126 1.0000 20 chr11:3819017-3819037 1.0000 20 chr9:33001643-33001663 1.0000 20 chr8:11351120-11351140 1.0000 20 chr1:221928097-221928117 1.0000 20 chr16:3285211-3285231 1.0000 20 chr1:183573572-183573592 1.0000 20 chr4:154409243-154409263 1.0000 20 chr5:175964867-175964887 1.0000 20 chr22:37546200-37546220 1.0000 20 chr8:117768078-117768098 1.0000 20 chr9:100395626-100395646 1.0000 20 chr15:91537915-91537935 1.0000 20 chr3:99536663-99536683 1.0000 20 chr9:35617206-35617226 1.0000 20 chr14:96655787-96655807 1.0000 20 chr1:26496359-26496379 1.0000 20 chr1:209957951-209957971 1.0000 20 chr10:76587036-76587056 1.0000 20 chr4:113558265-113558285 1.0000 20 chr5:70751435-70751455 1.0000 20 chr7:55433973-55433993 1.0000 20 chr2:153574666-153574686 1.0000 20 chr12:31882050-31882070 1.0000 20 chr16:88079768-88079788 1.0000 20 chr1:168147974-168147994 1.0000 20 chr13:34392189-34392209 1.0000 20 chrX:149108467-149108487 1.0000 20 chr3:38206518-38206538 1.0000 20 chr2:241981171-241981191 1.0000 20 chr5:112849381-112849401 1.0000 20 chr6:27440709-27440729 1.0000 20 chr17:38697551-38697571 1.0000 20 chr7:2354484-2354504 1.0000 20 chr4:104119666-104119686 1.0000 20 chr4:146019367-146019387 1.0000 20 chr5:95297772-95297792 1.0000 20 chr7:45026346-45026366 1.0000 20 chr11:10329569-10329589 1.0000 20 chr1:47184867-47184887 1.0000 20 chr18:76829199-76829219 1.0000 20 chr18:43830658-43830678 1.0000 20 chr6:148724-148744 1.0000 20 chr1:183573772-183573792 1.0000 20 chr12:1714426-1714446 1.0000 20 chr1:110527297-110527317 1.0000 20 chr17:47755402-47755422 1.0000 20 chr3:10028550-10028570 1.0000 20 chr3:52322019-52322039 1.0000 20 chr6:41513839-41513859 1.0000 20 chr17:7155546-7155566 1.0000 20 chr11:1872305-1872325 1.0000 20 chr14:60715725-60715745 1.0000 20 chr18:77866865-77866885 1.0000 20 chr19:10514285-10514305 1.0000 20 chr5:78810424-78810444 1.0000 20 chr1:27935342-27935362 1.0000 20 chr19:6393452-6393472 1.0000 20 chr12:56521697-56521717 1.0000 20 chr17:33866411-33866431 1.0000 20 chr6:32939760-32939780 1.0000 20 chr12:16985558-16985578 1.0000 20 chr11:4116003-4116023 1.0000 20 chr2:46456942-46456962 1.0000 20 chr6:41301834-41301854 1.0000 20 chr11:111749964-11174998 1.0000 20 chr8:125486899-125486919 1.0000 20 chr2:105953833-105953853 1.0000 20 chr7:23221576-23221596 1.0000 20 chr2:208394791-208394811 1.0000 20 chr15:45016827-45016847 1.0000 20 chr16:89766746-89766766 1.0000 20 chr3:49466968-49466988 1.0000 20 chr20:35224165-35224185 1.0000 20 chr4:57253654-57253674 1.0000 20 chr19:8454865-8454885 1.0000 20 chr11:73088285-73088305 1.0000 20 chr19:18043789-18043809 1.0000 20 chr20:33146405-33146425 1.0000 20 chr2:114514400-114514420 1.0000 20 chr16:75657193-75657213 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_NBN/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/NBN.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.202 C 0.291 G 0.308 T 0.199 Background letter frequencies (from file dataset with add-one prior applied): A 0.202 C 0.291 G 0.308 T 0.199 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TGACGTCA MEME-1 width = 8 sites = 33 llr = 315 E-value = 4.1e-044 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGACGTCA MEME-1 Description -------------------------------------------------------------------------------- Simplified A :19::1:9 pos.-specific C :2:a::a: probability G :81:a::: matrix T a::::9:1 bits 2.3 2.1 * 1.9 * ** *** 1.6 * ****** Relative 1.4 * ****** Entropy 1.2 * ****** (13.8 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGACGTCA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACGTCA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr16:89766746-89766766 5 1.30e-05 CCAG TGACGTCA TCGGCTTC chr19:6393452-6393472 6 1.30e-05 TCTCG TGACGTCA GCACCCA chr5:95297772-95297792 12 1.30e-05 TAATCATGTC TGACGTCA C chr3:38206518-38206538 12 1.30e-05 GGTTACGCCG TGACGTCA C chr5:175964867-175964887 3 1.30e-05 GA TGACGTCA CCCCCAAGAG chr1:183573572-183573592 7 1.30e-05 CCATGA TGACGTCA TGGCCG chr8:11351120-11351140 12 1.30e-05 AGCAAGACTC TGACGTCA T chr6:30028963-30028983 4 1.30e-05 TTA TGACGTCA CAGCCAATC chr17:33914269-33914289 9 1.30e-05 ACGTTCTC TGACGTCA GAGT chr15:76016331-76016351 1 1.30e-05 . TGACGTCA TCTCCAGCTC chr7:137687001-137687021 3 1.30e-05 TG TGACGTCA CCGAGGAACT chr6:53213778-53213798 11 1.30e-05 GGGCTGACCG TGACGTCA CA chr17:4046960-4046980 6 1.30e-05 GCCGA TGACGTCA CGCTCGG chr3:158288890-158288910 10 1.30e-05 TCGTCCTGG TGACGTCA CAG chr1:714091-714111 2 1.30e-05 G TGACGTCA CAGGGGACTA chr19:57831833-57831853 13 1.30e-05 CTTCGTCGCG TGACGTCA chr7:100464945-100464965 4 1.30e-05 TGG TGACGTCA TCGGAGGCG chr6:139456111-139456131 3 1.30e-05 CG TGACGTCA CGCGGGCGGT chr1:224180340-224180360 6 1.30e-05 CCTTG TGACGTCA CGGAAGG chr13:49821997-49822017 3 1.30e-05 TA TGACGTCA CACGAGGAGC chr4:119512854-119512874 11 1.30e-05 GCGCCCTCCG TGACGTCA CA chr5:78810424-78810444 6 2.52e-05 GCAGC TCACGTCA CCGAGGT chr4:170541657-170541677 2 2.52e-05 T TCACGTCA ACGTAGTGAC chr11:4116003-4116023 1 3.38e-05 . TAACGTCA TTCGAACCCC chr14:23388160-23388180 11 7.95e-05 CACGCATTGG TGACGTCT GG chr17:79093581-79093601 9 7.95e-05 GCCTCCCA TGACGACA CGGG chr19:50862239-50862259 4 7.95e-05 CTA TGGCGTCA TGGTGATGG chr4:120375850-120375870 10 9.85e-05 GCGCTCTTG TGACGCCA CGG chr1:228296989-228297009 2 1.17e-04 A CGACGTCA CTGGCAGGCG chr6:41513839-41513859 10 1.61e-04 TCTGCCGCC TCACGTCT TCT chr1:110527297-110527317 5 1.61e-04 GACG TCACGACA GAGTGCCC chr11:77185454-77185474 6 1.61e-04 TCGCG TCGCGTCA CTGTTCT chr3:154042325-154042345 3 1.91e-04 TT TAGCGTCA CAAGCAGTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACGTCA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:89766746-89766766 1.3e-05 4_[+1]_8 chr19:6393452-6393472 1.3e-05 5_[+1]_7 chr5:95297772-95297792 1.3e-05 11_[+1]_1 chr3:38206518-38206538 1.3e-05 11_[+1]_1 chr5:175964867-175964887 1.3e-05 2_[+1]_10 chr1:183573572-183573592 1.3e-05 6_[+1]_6 chr8:11351120-11351140 1.3e-05 11_[+1]_1 chr6:30028963-30028983 1.3e-05 3_[+1]_9 chr17:33914269-33914289 1.3e-05 8_[+1]_4 chr15:76016331-76016351 1.3e-05 [+1]_12 chr7:137687001-137687021 1.3e-05 2_[+1]_10 chr6:53213778-53213798 1.3e-05 10_[+1]_2 chr17:4046960-4046980 1.3e-05 5_[+1]_7 chr3:158288890-158288910 1.3e-05 9_[+1]_3 chr1:714091-714111 1.3e-05 1_[+1]_11 chr19:57831833-57831853 1.3e-05 12_[+1] chr7:100464945-100464965 1.3e-05 3_[+1]_9 chr6:139456111-139456131 1.3e-05 2_[+1]_10 chr1:224180340-224180360 1.3e-05 5_[+1]_7 chr13:49821997-49822017 1.3e-05 2_[+1]_10 chr4:119512854-119512874 1.3e-05 10_[+1]_2 chr5:78810424-78810444 2.5e-05 5_[+1]_7 chr4:170541657-170541677 2.5e-05 1_[+1]_11 chr11:4116003-4116023 3.4e-05 [+1]_12 chr14:23388160-23388180 8e-05 10_[+1]_2 chr17:79093581-79093601 8e-05 8_[+1]_4 chr19:50862239-50862259 8e-05 3_[+1]_9 chr4:120375850-120375870 9.8e-05 9_[+1]_3 chr1:228296989-228297009 0.00012 1_[+1]_11 chr6:41513839-41513859 0.00016 9_[+1]_3 chr1:110527297-110527317 0.00016 4_[+1]_8 chr11:77185454-77185474 0.00016 5_[+1]_7 chr3:154042325-154042345 0.00019 2_[+1]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACGTCA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGACGTCA width=8 seqs=33 chr16:89766746-89766766 ( 5) TGACGTCA 1 chr19:6393452-6393472 ( 6) TGACGTCA 1 chr5:95297772-95297792 ( 12) TGACGTCA 1 chr3:38206518-38206538 ( 12) TGACGTCA 1 chr5:175964867-175964887 ( 3) TGACGTCA 1 chr1:183573572-183573592 ( 7) TGACGTCA 1 chr8:11351120-11351140 ( 12) TGACGTCA 1 chr6:30028963-30028983 ( 4) TGACGTCA 1 chr17:33914269-33914289 ( 9) TGACGTCA 1 chr15:76016331-76016351 ( 1) TGACGTCA 1 chr7:137687001-137687021 ( 3) TGACGTCA 1 chr6:53213778-53213798 ( 11) TGACGTCA 1 chr17:4046960-4046980 ( 6) TGACGTCA 1 chr3:158288890-158288910 ( 10) TGACGTCA 1 chr1:714091-714111 ( 2) TGACGTCA 1 chr19:57831833-57831853 ( 13) TGACGTCA 1 chr7:100464945-100464965 ( 4) TGACGTCA 1 chr6:139456111-139456131 ( 3) TGACGTCA 1 chr1:224180340-224180360 ( 6) TGACGTCA 1 chr13:49821997-49822017 ( 3) TGACGTCA 1 chr4:119512854-119512874 ( 11) TGACGTCA 1 chr5:78810424-78810444 ( 6) TCACGTCA 1 chr4:170541657-170541677 ( 2) TCACGTCA 1 chr11:4116003-4116023 ( 1) TAACGTCA 1 chr14:23388160-23388180 ( 11) TGACGTCT 1 chr17:79093581-79093601 ( 9) TGACGACA 1 chr19:50862239-50862259 ( 4) TGGCGTCA 1 chr4:120375850-120375870 ( 10) TGACGCCA 1 chr1:228296989-228297009 ( 2) CGACGTCA 1 chr6:41513839-41513859 ( 10) TCACGTCT 1 chr1:110527297-110527317 ( 5) TCACGACA 1 chr11:77185454-77185474 ( 6) TCGCGTCA 1 chr3:154042325-154042345 ( 3) TAGCGTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACGTCA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.96 E= 4.1e-044 -1169 -326 -1169 229 -174 -94 136 -1169 217 -1169 -176 -1169 -1169 178 -1169 -1169 -1169 -1169 170 -1169 -174 -326 -1169 219 -1169 178 -1169 -1169 221 -1169 -1169 -171 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACGTCA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 4.1e-044 0.000000 0.030303 0.000000 0.969697 0.060606 0.151515 0.787879 0.000000 0.909091 0.000000 0.090909 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.060606 0.030303 0.000000 0.909091 0.000000 1.000000 0.000000 0.000000 0.939394 0.000000 0.000000 0.060606 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACGTCA MEME-1 regular expression -------------------------------------------------------------------------------- TGACGTCA -------------------------------------------------------------------------------- Time 1.87 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGTGTGW MEME-2 width = 8 sites = 20 llr = 174 E-value = 1.9e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGTGTGW MEME-2 Description -------------------------------------------------------------------------------- Simplified A :1:::::4 pos.-specific C 2:2::2:: probability G 7:9:a:a: matrix T 1a:a:9:7 bits 2.3 * 2.1 * * 1.9 * * 1.6 * **** Relative 1.4 * ***** Entropy 1.2 ******* (12.5 bits) 0.9 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GTGTGTGT consensus C A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGW MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:16985558-16985578 5 1.41e-05 gtgt gtgtgtgt gtgtgtgt chr1:27935342-27935362 13 1.41e-05 CCAGGCTCgt gtgtgtgt chrX:64914937-64914957 6 1.41e-05 tctgc gtgtgtgt gtgtgtg chr16:11171850-11171870 2 1.41e-05 t gtgtgtgt gtgtgtgtTT chr19:6532538-6532558 2 1.41e-05 t gtgtgtgt tcgtgtttgt chr16:21946488-21946508 4 1.41e-05 tgt gtgtgtgt gtgtgtgtg chr19:33237738-33237758 2 2.84e-05 T GTGTGTGA GAGAAGGAGA chr1:40840290-40840310 1 2.84e-05 . gtgtgtgA GAGAGAGAGA chr20:37626358-37626378 4 2.84e-05 TCC GTGTGTGA GGGGCCTAC chr1:201405072-201405092 1 2.84e-05 . gtgtgtgA agagagagag chr8:38627447-38627467 7 4.18e-05 gtgtga ctgtgtgt atggtg chr16:88658242-88658262 5 5.09e-05 GTGG TTGTGTGT TTCATCTT chr21:45632069-45632089 13 7.78e-05 GAACGAGTGA CTGTGTGA chr11:73088285-73088305 3 1.08e-04 TG GTGTGCGT GTGGGGTCAA chr17:38697551-38697571 7 1.08e-04 atgagt gtgtgcgt gcatgt chr4:154409243-154409263 8 1.08e-04 gagtttt gtgtgcgt gtgtg chr1:183573772-183573792 5 1.69e-04 CTGC CTCTGTGT CTTCCTCA chr12:64616333-64616353 9 1.69e-04 AGGCCCCT CTCTGTGT GGTT chr2:153574666-153574686 3 2.38e-04 AA GAGTGTGA GCGTAGTGGG chr2:37194118-37194138 13 2.66e-04 TTCCTGGCCG TTCTGTGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGW MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:16985558-16985578 1.4e-05 4_[+2]_8 chr1:27935342-27935362 1.4e-05 12_[+2] chrX:64914937-64914957 1.4e-05 5_[+2]_7 chr16:11171850-11171870 1.4e-05 1_[+2]_11 chr19:6532538-6532558 1.4e-05 1_[+2]_11 chr16:21946488-21946508 1.4e-05 3_[+2]_9 chr19:33237738-33237758 2.8e-05 1_[+2]_11 chr1:40840290-40840310 2.8e-05 [+2]_12 chr20:37626358-37626378 2.8e-05 3_[+2]_9 chr1:201405072-201405092 2.8e-05 [+2]_12 chr8:38627447-38627467 4.2e-05 6_[+2]_6 chr16:88658242-88658262 5.1e-05 4_[+2]_8 chr21:45632069-45632089 7.8e-05 12_[+2] chr11:73088285-73088305 0.00011 2_[+2]_10 chr17:38697551-38697571 0.00011 6_[+2]_6 chr4:154409243-154409263 0.00011 7_[+2]_5 chr1:183573772-183573792 0.00017 4_[+2]_8 chr12:64616333-64616353 0.00017 8_[+2]_4 chr2:153574666-153574686 0.00024 2_[+2]_10 chr2:37194118-37194138 0.00027 12_[+2] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGW MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGTGTGW width=8 seqs=20 chr12:16985558-16985578 ( 5) GTGTGTGT 1 chr1:27935342-27935362 ( 13) GTGTGTGT 1 chrX:64914937-64914957 ( 6) GTGTGTGT 1 chr16:11171850-11171870 ( 2) GTGTGTGT 1 chr19:6532538-6532558 ( 2) GTGTGTGT 1 chr16:21946488-21946508 ( 4) GTGTGTGT 1 chr19:33237738-33237758 ( 2) GTGTGTGA 1 chr1:40840290-40840310 ( 1) GTGTGTGA 1 chr20:37626358-37626378 ( 4) GTGTGTGA 1 chr1:201405072-201405092 ( 1) GTGTGTGA 1 chr8:38627447-38627467 ( 7) CTGTGTGT 1 chr16:88658242-88658262 ( 5) TTGTGTGT 1 chr21:45632069-45632089 ( 13) CTGTGTGA 1 chr11:73088285-73088305 ( 3) GTGTGCGT 1 chr17:38697551-38697571 ( 7) GTGTGCGT 1 chr4:154409243-154409263 ( 8) GTGTGCGT 1 chr1:183573772-183573792 ( 5) CTCTGTGT 1 chr12:64616333-64616353 ( 9) CTCTGTGT 1 chr2:153574666-153574686 ( 3) GAGTGTGA 1 chr2:37194118-37194138 ( 13) TTCTGTGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGW MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.17831 E= 1.9e-010 -1097 -54 119 -99 -202 -1097 -1097 226 -1097 -96 147 -1097 -1097 -1097 -1097 233 -1097 -1097 170 -1097 -1097 -96 -1097 210 -1097 -1097 170 -1097 79 -1097 -1097 171 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGW MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 1.9e-010 0.000000 0.200000 0.700000 0.100000 0.050000 0.000000 0.000000 0.950000 0.000000 0.150000 0.850000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.150000 0.000000 0.850000 0.000000 0.000000 1.000000 0.000000 0.350000 0.000000 0.000000 0.650000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGW MEME-2 regular expression -------------------------------------------------------------------------------- [GC]TGTGTG[TA] -------------------------------------------------------------------------------- Time 2.61 secs. ******************************************************************************** ******************************************************************************** MOTIF CACACWCA MEME-3 width = 8 sites = 12 llr = 112 E-value = 6.3e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACACWCA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :a:8:7:8 pos.-specific C a:a:a:a: probability G :::2:::: matrix T :::1:3:3 bits 2.3 * 2.1 * 1.9 *** * * 1.6 *** * * Relative 1.4 *** **** Entropy 1.2 ******** (13.5 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CACACACA consensus T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACWCA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr9:114790747-114790767 10 1.19e-05 acacatacg cacacaca TGT chr6:34641676-34641696 7 1.19e-05 cacata cacacaca cacaca chr6:44228553-44228573 12 1.19e-05 CAAACTACAa cacacaca c chrX:9979649-9979669 4 1.19e-05 aca cacacaca caAagagag chr19:12896100-12896120 11 1.19e-05 acctcttttt cacacaca ca chr3:194871535-194871555 9 1.19e-05 ctcacata cacacaca ctca chr17:47755402-47755422 10 2.37e-05 cggagcgcg cacactca cac chr15:78177415-78177435 10 2.37e-05 acatactct cacactca cac chr18:77866865-77866885 2 4.71e-05 A CACACTCT CCCCACCCCT chr16:85605806-85605826 9 6.53e-05 acacacag cacgcaca cacc chr7:2354484-2354504 8 1.24e-04 gctcacc cacgcact GCATC chr22:20850578-20850598 2 1.65e-04 t cactctct cattccttcc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACWCA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:114790747-114790767 1.2e-05 9_[+3]_3 chr6:34641676-34641696 1.2e-05 6_[+3]_6 chr6:44228553-44228573 1.2e-05 11_[+3]_1 chrX:9979649-9979669 1.2e-05 3_[+3]_9 chr19:12896100-12896120 1.2e-05 10_[+3]_2 chr3:194871535-194871555 1.2e-05 8_[+3]_4 chr17:47755402-47755422 2.4e-05 9_[+3]_3 chr15:78177415-78177435 2.4e-05 9_[+3]_3 chr18:77866865-77866885 4.7e-05 1_[+3]_11 chr16:85605806-85605826 6.5e-05 8_[+3]_4 chr7:2354484-2354504 0.00012 7_[+3]_5 chr22:20850578-20850598 0.00017 1_[+3]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACWCA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACACWCA width=8 seqs=12 chr9:114790747-114790767 ( 10) CACACACA 1 chr6:34641676-34641696 ( 7) CACACACA 1 chr6:44228553-44228573 ( 12) CACACACA 1 chrX:9979649-9979669 ( 4) CACACACA 1 chr19:12896100-12896120 ( 11) CACACACA 1 chr3:194871535-194871555 ( 9) CACACACA 1 chr17:47755402-47755422 ( 10) CACACTCA 1 chr15:78177415-78177435 ( 10) CACACTCA 1 chr18:77866865-77866885 ( 2) CACACTCT 1 chr16:85605806-85605826 ( 9) CACGCACA 1 chr7:2354484-2354504 ( 8) CACGCACT 1 chr22:20850578-20850598 ( 2) CACTCTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACWCA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.52481 E= 6.3e-003 -1023 178 -1023 -1023 230 -1023 -1023 -1023 -1023 178 -1023 -1023 189 -1023 -88 -125 -1023 178 -1023 -1023 172 -1023 -1023 75 -1023 178 -1023 -1023 189 -1023 -1023 33 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACWCA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 6.3e-003 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.000000 0.166667 0.083333 0.000000 1.000000 0.000000 0.000000 0.666667 0.000000 0.000000 0.333333 0.000000 1.000000 0.000000 0.000000 0.750000 0.000000 0.000000 0.250000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACWCA MEME-3 regular expression -------------------------------------------------------------------------------- CACAC[AT]C[AT] -------------------------------------------------------------------------------- Time 4.26 secs. ******************************************************************************** ******************************************************************************** MOTIF GAGARAGA MEME-4 width = 8 sites = 15 llr = 127 E-value = 2.1e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGARAGA MEME-4 Description -------------------------------------------------------------------------------- Simplified A 18:9693a pos.-specific C :::11::: probability G 92a:317: matrix T :::::1:: bits 2.3 * 2.1 * 1.9 * * 1.6 ** * * Relative 1.4 **** * * Entropy 1.2 **** * * (12.2 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GAGAAAGA consensus G G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGARAGA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr14:60715725-60715745 2 9.83e-06 A GAGAAAGA AGCTGGGTAA chr10:70988703-70988723 9 9.83e-06 gaaagaaa gagaaaga agaa chr3:134571944-134571964 5 9.83e-06 ggaa gagaaaga agtagaat chr1:40840290-40840310 9 3.13e-05 gtgtgtgA GAGAGAGA GAGA chr19:48828690-48828710 11 3.13e-05 gagagcgagc gagagaga aa chr6:139613160-139613180 9 3.13e-05 TTACAAGG GAGAGAGA AACC chr1:201405072-201405092 10 3.13e-05 gtgtgtgAa gagagaga gag chrX:149108467-149108487 9 5.61e-05 GGGGCAGT GGGAAAGA GCTG chr12:1714426-1714446 1 9.62e-05 . GAGACAGA GGGTGGTGTG chr8:141468198-141468218 6 9.62e-05 aggga gggaaaaa ggagggg chr19:47616950-47616970 10 9.62e-05 CTACGGAGA GGGAAAAA AAA chr17:33866411-33866431 7 1.23e-04 aaagaa aagaaaaa tgaagg chr19:33237738-33237758 10 1.52e-04 TGTGTGTGA GAGAAGGA GAG chr2:208394791-208394811 2 1.68e-04 A GAGAATAA AACTCCAGCG chr1:221928097-221928117 7 2.78e-04 gtgaca gagcgaga ctccgt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGARAGA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr14:60715725-60715745 9.8e-06 1_[+4]_11 chr10:70988703-70988723 9.8e-06 8_[+4]_4 chr3:134571944-134571964 9.8e-06 4_[+4]_8 chr1:40840290-40840310 3.1e-05 8_[+4]_4 chr19:48828690-48828710 3.1e-05 10_[+4]_2 chr6:139613160-139613180 3.1e-05 8_[+4]_4 chr1:201405072-201405092 3.1e-05 9_[+4]_3 chrX:149108467-149108487 5.6e-05 8_[+4]_4 chr12:1714426-1714446 9.6e-05 [+4]_12 chr8:141468198-141468218 9.6e-05 5_[+4]_7 chr19:47616950-47616970 9.6e-05 9_[+4]_3 chr17:33866411-33866431 0.00012 6_[+4]_6 chr19:33237738-33237758 0.00015 9_[+4]_3 chr2:208394791-208394811 0.00017 1_[+4]_11 chr1:221928097-221928117 0.00028 6_[+4]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGARAGA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGARAGA width=8 seqs=15 chr14:60715725-60715745 ( 2) GAGAAAGA 1 chr10:70988703-70988723 ( 9) GAGAAAGA 1 chr3:134571944-134571964 ( 5) GAGAAAGA 1 chr1:40840290-40840310 ( 9) GAGAGAGA 1 chr19:48828690-48828710 ( 11) GAGAGAGA 1 chr6:139613160-139613180 ( 9) GAGAGAGA 1 chr1:201405072-201405092 ( 10) GAGAGAGA 1 chrX:149108467-149108487 ( 9) GGGAAAGA 1 chr12:1714426-1714446 ( 1) GAGACAGA 1 chr8:141468198-141468218 ( 6) GGGAAAAA 1 chr19:47616950-47616970 ( 10) GGGAAAAA 1 chr17:33866411-33866431 ( 7) AAGAAAAA 1 chr19:33237738-33237758 ( 10) GAGAAGGA 1 chr2:208394791-208394811 ( 2) GAGAATAA 1 chr1:221928097-221928117 ( 7) GAGCGAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGARAGA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.42938 E= 2.1e-001 -160 -1055 160 -1055 198 -1055 -62 -1055 -1055 -1055 170 -1055 220 -212 -1055 -1055 157 -212 12 -1055 210 -1055 -220 -157 40 -1055 125 -1055 230 -1055 -1055 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGARAGA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 2.1e-001 0.066667 0.000000 0.933333 0.000000 0.800000 0.000000 0.200000 0.000000 0.000000 0.000000 1.000000 0.000000 0.933333 0.066667 0.000000 0.000000 0.600000 0.066667 0.333333 0.000000 0.866667 0.000000 0.066667 0.066667 0.266667 0.000000 0.733333 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGARAGA MEME-4 regular expression -------------------------------------------------------------------------------- G[AG]GA[AG]A[GA]A -------------------------------------------------------------------------------- Time 7.24 secs. ******************************************************************************** ******************************************************************************** MOTIF TMTGACGT MEME-5 width = 8 sites = 6 llr = 60 E-value = 2.7e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TMTGACGT MEME-5 Description -------------------------------------------------------------------------------- Simplified A :3::a:2: pos.-specific C :5:::a:: probability G :2:a::8: matrix T a:a::::a bits 2.3 * * * * 2.1 * * * * 1.9 * * ** * 1.6 * **** * Relative 1.4 * **** * Entropy 1.2 * ****** (14.4 bits) 0.9 * ****** 0.7 * ****** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TCTGACGT consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TMTGACGT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr10:111971059-11197107 12 1.28e-05 TCCAGCCTCT TCTGACGT C chr18:2655164-2655184 10 1.28e-05 GAGCGCCCT TCTGACGT TCT chr6:32939760-32939780 12 2.17e-05 AAATGAAGTT TATGACGT C chr19:50979543-50979563 13 2.17e-05 GAGCGGGCTT TATGACGT chr2:105953833-105953853 4 4.36e-05 ACG TCTGACAT CCTCCTCTT chr3:99536663-99536683 12 4.36e-05 GGGGCAGAGG TGTGACGT C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TMTGACGT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:111971059-11197107 1.3e-05 11_[+5]_1 chr18:2655164-2655184 1.3e-05 9_[+5]_3 chr6:32939760-32939780 2.2e-05 11_[+5]_1 chr19:50979543-50979563 2.2e-05 12_[+5] chr2:105953833-105953853 4.4e-05 3_[+5]_9 chr3:99536663-99536683 4.4e-05 11_[+5]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TMTGACGT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TMTGACGT width=8 seqs=6 chr10:111971059-11197107 ( 12) TCTGACGT 1 chr18:2655164-2655184 ( 10) TCTGACGT 1 chr6:32939760-32939780 ( 12) TATGACGT 1 chr19:50979543-50979563 ( 13) TATGACGT 1 chr2:105953833-105953853 ( 4) TCTGACAT 1 chr3:99536663-99536683 ( 12) TGTGACGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TMTGACGT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.73685 E= 2.7e+002 -923 -923 -923 233 72 78 -88 -923 -923 -923 -923 233 -923 -923 170 -923 230 -923 -923 -923 -923 178 -923 -923 -28 -923 144 -923 -923 -923 -923 233 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TMTGACGT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 2.7e+002 0.000000 0.000000 0.000000 1.000000 0.333333 0.500000 0.166667 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.166667 0.000000 0.833333 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TMTGACGT MEME-5 regular expression -------------------------------------------------------------------------------- T[CA]TGACGT -------------------------------------------------------------------------------- Time 10.15 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:59055580-59055600 8.74e-01 20 chr1:243265064-243265084 6.11e-01 20 chr1:10071-10091 7.80e-01 20 chr7:64541729-64541749 8.79e-01 20 chr4:119512854-119512874 2.49e-04 10_[+1(1.30e-05)]_2 chr7:140396462-140396482 9.71e-01 20 chr2:96068441-96068461 6.79e-01 20 chr7:65235855-65235875 9.09e-01 20 chr14:68086471-68086491 7.91e-01 20 chr7:140624877-140624897 5.07e-01 20 chr13:49821997-49822017 5.95e-05 2_[+1(1.30e-05)]_10 chr2:19548143-19548163 3.52e-01 20 chr5:11571-11591 7.80e-01 20 chr2:74781560-74781580 6.69e-01 20 chr16:88658242-88658262 3.95e-02 4_[+2(5.09e-05)]_8 chr12:64616333-64616353 7.23e-03 20 chr1:224180340-224180360 4.42e-05 5_[+1(1.30e-05)]_7 chr3:194871535-194871555 4.38e-02 8_[+3(1.19e-05)]_4 chr14:69260183-69260203 4.26e-01 20 chr14:88851962-88851982 4.48e-01 20 chr6:139456111-139456131 1.77e-03 2_[+1(1.30e-05)]_10 chr7:45808656-45808676 4.54e-01 20 chr19:50979543-50979563 7.51e-03 12_[+5(2.17e-05)] chr20:46102339-46102359 2.07e-01 20 chr19:56015289-56015309 7.69e-01 20 chr11:77185454-77185474 5.82e-02 20 chr8:23386263-23386283 3.97e-01 20 chr7:100464945-100464965 3.40e-03 3_[+1(1.30e-05)]_9 chr9:111696391-111696411 2.81e-01 20 chr8:38627447-38627467 1.70e-02 6_[+2(4.18e-05)]_6 chr7:65958560-65958580 1.51e-01 20 chr8:21967248-21967268 5.51e-02 20 chr19:57831833-57831853 1.13e-03 12_[+1(1.30e-05)] chr18:2655164-2655184 6.23e-03 9_[+5(1.28e-05)]_3 chr20:47537965-47537985 8.83e-01 20 chr19:46009830-46009850 8.76e-01 20 chr1:714091-714111 1.29e-02 1_[+1(1.30e-05)]_11 chr14:50053226-50053246 7.13e-01 20 chr19:47616950-47616970 7.40e-02 9_[+4(9.62e-05)]_3 chr16:21946488-21946508 6.39e-02 1_[+2(1.41e-05)]_[+2(1.41e-05)]_3 chr7:124569945-124569965 5.54e-01 20 chr3:185000654-185000674 6.83e-01 20 chr3:154042325-154042345 5.81e-03 20 chr3:158288890-158288910 2.19e-03 9_[+1(1.30e-05)]_3 chr19:9546266-9546286 2.95e-01 20 chr19:50862239-50862259 2.95e-03 3_[+1(7.95e-05)]_9 chr15:42840970-42840990 2.05e-01 20 chr1:201405072-201405092 2.30e-05 [+2(2.84e-05)]_1_[+4(3.13e-05)]_3 chr19:3035710-3035730 9.72e-01 20 chr7:44646103-44646123 2.99e-01 20 chr19:36103586-36103606 6.74e-01 20 chr2:96676259-96676279 8.27e-01 20 chr4:17578698-17578718 3.66e-01 20 chr8:141468198-141468218 1.47e-01 5_[+4(9.62e-05)]_7 chr6:86352895-86352915 1.49e-01 20 chr1:936263-936283 8.95e-01 20 chr16:27561380-27561400 8.83e-01 20 chr16:81041057-81041077 5.52e-01 20 chr3:134571944-134571964 2.00e-02 4_[+4(9.83e-06)]_8 chr17:4046960-4046980 1.08e-04 5_[+1(1.30e-05)]_7 chr2:198152158-198152178 1.07e-01 20 chr19:6532538-6532558 2.56e-02 1_[+2(1.41e-05)]_11 chr20:37626358-37626378 9.50e-03 3_[+2(2.84e-05)]_9 chr2:28114132-28114152 8.98e-02 20 chr4:170541657-170541677 1.97e-02 1_[+1(2.52e-05)]_11 chr9:86323117-86323137 6.58e-01 20 chr16:66637965-66637985 9.56e-01 20 chr11:95523569-95523589 7.63e-01 20 chr5:96143846-96143866 3.33e-01 20 chr6:44355198-44355218 5.82e-01 20 chr7:66309994-66310014 1.50e-01 20 chr10:111971059-11197107 4.72e-03 11_[+5(1.28e-05)]_1 chr6:139613160-139613180 4.60e-02 8_[+4(3.13e-05)]_4 chr12:120729945-12072996 1.47e-01 20 chr19:12896100-12896120 1.23e-02 10_[+3(1.19e-05)]_2 chr17:18528990-18529010 5.40e-01 20 chr10:70988703-70988723 3.84e-02 8_[+4(9.83e-06)]_4 chr19:42787520-42787540 2.49e-01 20 chr16:11171850-11171870 3.92e-02 1_[+2(1.41e-05)]_[+2(1.41e-05)]_3 chr16:85045206-85045226 9.28e-01 20 chr14:32030592-32030612 2.06e-01 20 chr2:197791689-197791709 9.08e-02 20 chr6:53213778-53213798 1.11e-04 10_[+1(1.30e-05)]_2 chr8:42195983-42196003 9.97e-01 20 chr7:3018145-3018165 2.44e-01 20 chr1:109289224-109289244 7.52e-01 20 chr17:79093581-79093601 2.12e-02 8_[+1(7.95e-05)]_4 chr17:7835507-7835527 6.49e-01 20 chr19:19772711-19772731 1.68e-01 20 chr12:56366904-56366924 3.92e-01 20 chr3:196189947-196189967 1.63e-01 20 chr14:105219441-10521946 8.41e-01 20 chr7:23571673-23571693 9.79e-01 20 chr11:6633566-6633586 3.67e-01 20 chr7:129592789-129592809 3.26e-01 20 chr17:40829306-40829326 5.42e-01 20 chr7:137687001-137687021 8.48e-05 2_[+1(1.30e-05)]_10 chr9:87324855-87324875 4.61e-01 20 chr1:28099542-28099562 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chr4:120375850-120375870 4.52e-03 9_[+1(9.85e-05)]_3 chr8:101964583-101964603 5.77e-01 20 chr18:33647519-33647539 1.42e-01 20 chr2:219745082-219745102 6.04e-01 20 chr9:114790747-114790767 3.53e-02 9_[+3(1.19e-05)]_3 chr2:74259540-74259560 7.43e-01 20 chr19:47987442-47987462 9.48e-01 20 chr10:99496875-99496895 1.61e-01 20 chr14:103571582-10357160 7.64e-01 20 chr9:130746396-130746416 8.88e-01 20 chr19:48828690-48828710 1.53e-02 10_[+4(3.13e-05)]_2 chr11:67204074-67204094 5.72e-01 20 chr6:26342230-26342250 7.20e-02 20 chr19:54889938-54889958 9.37e-01 20 chr9:125027145-125027165 1.49e-01 20 chr16:86588847-86588867 3.38e-01 20 chr1:228296989-228297009 3.17e-02 20 chr1:40840290-40840310 9.15e-05 [+2(2.84e-05)]_[+4(3.13e-05)]_4 chr8:38626333-38626353 6.63e-02 20 chr7:6413543-6413563 4.92e-01 20 chrX:40944253-40944273 8.17e-01 20 chr6:32164334-32164354 9.93e-01 20 chr5:150992480-150992500 4.58e-01 20 chr6:29617933-29617953 7.70e-01 20 chr12:121454300-12145432 6.65e-01 20 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20 chr16:3285211-3285231 7.81e-01 20 chr1:183573572-183573592 1.47e-03 6_[+1(1.30e-05)]_6 chr4:154409243-154409263 1.33e-01 20 chr5:175964867-175964887 2.15e-04 2_[+1(1.30e-05)]_10 chr22:37546200-37546220 3.67e-01 20 chr8:117768078-117768098 2.27e-01 20 chr9:100395626-100395646 5.19e-01 20 chr15:91537915-91537935 8.28e-01 20 chr3:99536663-99536683 7.32e-03 11_[+5(4.36e-05)]_1 chr9:35617206-35617226 5.49e-01 20 chr14:96655787-96655807 8.63e-01 20 chr1:26496359-26496379 6.90e-01 20 chr1:209957951-209957971 8.50e-01 20 chr10:76587036-76587056 2.80e-01 20 chr4:113558265-113558285 6.28e-01 20 chr5:70751435-70751455 2.18e-01 20 chr7:55433973-55433993 4.28e-01 20 chr2:153574666-153574686 3.92e-02 20 chr12:31882050-31882070 7.87e-01 20 chr16:88079768-88079788 7.70e-01 20 chr1:168147974-168147994 5.09e-01 20 chr13:34392189-34392209 8.11e-01 20 chrX:149108467-149108487 2.41e-02 8_[+4(5.61e-05)]_4 chr3:38206518-38206538 1.25e-03 11_[+1(1.30e-05)]_1 chr2:241981171-241981191 2.57e-01 20 chr5:112849381-112849401 7.47e-01 20 chr6:27440709-27440729 5.06e-01 20 chr17:38697551-38697571 1.32e-01 20 chr7:2354484-2354504 4.48e-02 20 chr4:104119666-104119686 3.77e-01 20 chr4:146019367-146019387 9.33e-01 20 chr5:95297772-95297792 2.13e-05 9_[+5(1.28e-05)]_3 chr7:45026346-45026366 9.98e-01 20 chr11:10329569-10329589 1.60e-01 20 chr1:47184867-47184887 8.06e-01 20 chr18:76829199-76829219 5.28e-02 20 chr18:43830658-43830678 2.90e-01 20 chr6:148724-148744 9.76e-01 20 chr1:183573772-183573792 3.12e-02 20 chr12:1714426-1714446 3.12e-03 [+4(9.62e-05)]_12 chr1:110527297-110527317 1.73e-02 20 chr17:47755402-47755422 2.53e-02 9_[+3(2.37e-05)]_3 chr3:10028550-10028570 3.97e-01 20 chr3:52322019-52322039 9.66e-01 20 chr6:41513839-41513859 2.53e-02 20 chr17:7155546-7155566 9.91e-01 20 chr11:1872305-1872325 4.89e-02 20 chr14:60715725-60715745 1.67e-02 1_[+4(9.83e-06)]_11 chr18:77866865-77866885 4.64e-02 1_[+3(4.71e-05)]_11 chr19:10514285-10514305 8.81e-01 20 chr5:78810424-78810444 5.24e-03 5_[+1(2.52e-05)]_7 chr1:27935342-27935362 1.25e-02 10_[+2(1.41e-05)]_2 chr19:6393452-6393472 1.42e-03 5_[+1(1.30e-05)]_7 chr12:56521697-56521717 4.19e-01 20 chr17:33866411-33866431 1.09e-01 20 chr6:32939760-32939780 5.67e-03 11_[+5(2.17e-05)]_1 chr12:16985558-16985578 6.39e-02 [+2(1.41e-05)]_[+2(1.41e-05)]_4 chr11:4116003-4116023 5.54e-02 [+1(3.38e-05)]_12 chr2:46456942-46456962 1.91e-01 20 chr6:41301834-41301854 2.02e-01 20 chr11:111749964-11174998 1.39e-01 20 chr8:125486899-125486919 4.62e-01 20 chr2:105953833-105953853 8.56e-03 3_[+5(4.36e-05)]_9 chr7:23221576-23221596 5.12e-01 20 chr2:208394791-208394811 6.33e-02 20 chr15:45016827-45016847 9.83e-01 20 chr16:89766746-89766766 2.34e-03 4_[+1(1.30e-05)]_8 chr3:49466968-49466988 9.86e-01 20 chr20:35224165-35224185 3.49e-01 20 chr4:57253654-57253674 3.32e-01 20 chr19:8454865-8454885 4.92e-01 20 chr11:73088285-73088305 4.37e-03 20 chr19:18043789-18043809 9.38e-01 20 chr20:33146405-33146425 1.77e-01 20 chr2:114514400-114514420 9.00e-01 20 chr16:75657193-75657213 8.58e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n10.farnam.hpc.yale.internal ********************************************************************************