******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/MYC.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr12:53400827-53400847 1.0000 20 chr3:184032667-184032687 1.0000 20 chr3:8809373-8809393 1.0000 20 chr11:61061870-61061890 1.0000 20 chr10:103893414-10389343 1.0000 20 chr17:1961645-1961665 1.0000 20 chr1:53792458-53792478 1.0000 20 chr8:82193018-82193038 1.0000 20 chr19:30433645-30433665 1.0000 20 chr9:2157932-2157952 1.0000 20 chr12:3861563-3861583 1.0000 20 chr2:43454322-43454342 1.0000 20 chr10:76995338-76995358 1.0000 20 chr2:20550198-20550218 1.0000 20 chr9:66455773-66455793 1.0000 20 chr11:11642665-11642685 1.0000 20 chr4:88141460-88141480 1.0000 20 chr12:121734257-12173427 1.0000 20 chr9:86594627-86594647 1.0000 20 chr20:26189323-26189343 1.0000 20 chr6:167368829-167368849 1.0000 20 chr17:34890827-34890847 1.0000 20 chr3:97690814-97690834 1.0000 20 chr12:21810347-21810367 1.0000 20 chr1:165797110-165797130 1.0000 20 chr17:80057018-80057038 1.0000 20 chr12:131357189-13135720 1.0000 20 chr8:145514992-145515012 1.0000 20 chrX:48326709-48326729 1.0000 20 chr2:183989555-183989575 1.0000 20 chr22:37881197-37881217 1.0000 20 chr10:21822868-21822888 1.0000 20 chr17:7211612-7211632 1.0000 20 chr13:30169295-30169315 1.0000 20 chr6:73332386-73332406 1.0000 20 chr7:138720676-138720696 1.0000 20 chr1:245082244-245082264 1.0000 20 chr16:88878267-88878287 1.0000 20 chrX:48433160-48433180 1.0000 20 chr14:88237723-88237743 1.0000 20 chr17:61778062-61778082 1.0000 20 chr3:12526150-12526170 1.0000 20 chr11:107729318-10772933 1.0000 20 chr5:81573999-81574019 1.0000 20 chr14:50863481-50863501 1.0000 20 chr17:27052971-27052991 1.0000 20 chr2:75062130-75062150 1.0000 20 chr4:57302483-57302503 1.0000 20 chr1:155164313-155164333 1.0000 20 chr10:88726458-88726478 1.0000 20 chr6:170125053-170125073 1.0000 20 chrX:10079552-10079572 1.0000 20 chr9:37592233-37592253 1.0000 20 chr7:44836652-44836672 1.0000 20 chr20:2633469-2633489 1.0000 20 chr9:21802859-21802879 1.0000 20 chr15:75495159-75495179 1.0000 20 chr1:154972361-154972381 1.0000 20 chr3:50378052-50378072 1.0000 20 chr17:37356863-37356883 1.0000 20 chr3:167814036-167814056 1.0000 20 chr6:151187449-151187469 1.0000 20 chr16:21552612-21552632 1.0000 20 chr17:28088222-28088242 1.0000 20 chr14:91884531-91884551 1.0000 20 chr2:192543532-192543552 1.0000 20 chr2:85766930-85766950 1.0000 20 chr2:10260776-10260796 1.0000 20 chr19:18544006-18544026 1.0000 20 chr17:79632858-79632878 1.0000 20 chr19:54041144-54041164 1.0000 20 chr10:105451815-10545183 1.0000 20 chr7:22893958-22893978 1.0000 20 chr17:66287619-66287639 1.0000 20 chr5:44809206-44809226 1.0000 20 chr20:42086882-42086902 1.0000 20 chr22:43582860-43582880 1.0000 20 chr8:42911807-42911827 1.0000 20 chr10:104474566-10447458 1.0000 20 chr17:7476964-7476984 1.0000 20 chrX:53101088-53101108 1.0000 20 chr2:242641122-242641142 1.0000 20 chr2:174219973-174219993 1.0000 20 chr2:207024814-207024834 1.0000 20 chr17:79213389-79213409 1.0000 20 chr19:18700427-18700447 1.0000 20 chr3:12526349-12526369 1.0000 20 chr1:43148713-43148733 1.0000 20 chr1:90309028-90309048 1.0000 20 chr2:160761207-160761227 1.0000 20 chr6:76311764-76311784 1.0000 20 chr12:49318580-49318600 1.0000 20 chr5:72794485-72794505 1.0000 20 chr1:107599683-107599703 1.0000 20 chr19:1857180-1857200 1.0000 20 chr19:1592325-1592345 1.0000 20 chr9:100881306-100881326 1.0000 20 chr14:102554908-10255492 1.0000 20 chr20:305147-305167 1.0000 20 chr17:76130201-76130221 1.0000 20 chr6:3259377-3259397 1.0000 20 chr17:35306487-35306507 1.0000 20 chr19:1864276-1864296 1.0000 20 chr2:232328629-232328649 1.0000 20 chr18:29672849-29672869 1.0000 20 chr15:79272092-79272112 1.0000 20 chr16:89045057-89045077 1.0000 20 chr6:33396188-33396208 1.0000 20 chr9:113018385-113018405 1.0000 20 chr12:6977071-6977091 1.0000 20 chr9:139796702-139796722 1.0000 20 chr10:90640446-90640466 1.0000 20 chr4:73935135-73935155 1.0000 20 chr18:77748292-77748312 1.0000 20 chr10:120924981-12092500 1.0000 20 chr4:103997520-103997540 1.0000 20 chr10:104210271-10421029 1.0000 20 chr3:50329479-50329499 1.0000 20 chr8:144680396-144680416 1.0000 20 chr1:19923921-19923941 1.0000 20 chr6:711295-711315 1.0000 20 chr13:99852798-99852818 1.0000 20 chr8:74205687-74205707 1.0000 20 chr8:143534558-143534578 1.0000 20 chr7:92462452-92462472 1.0000 20 chr22:41809890-41809910 1.0000 20 chr8:55014263-55014283 1.0000 20 chr3:38035898-38035918 1.0000 20 chr12:6677342-6677362 1.0000 20 chr10:71993365-71993385 1.0000 20 chr4:110736976-110736996 1.0000 20 chr6:126102006-126102026 1.0000 20 chr8:117779087-117779107 1.0000 20 chr9:100747210-100747230 1.0000 20 chr19:46854077-46854097 1.0000 20 chr5:10250628-10250648 1.0000 20 chr1:8938349-8938369 1.0000 20 chr10:70716151-70716171 1.0000 20 chr1:44445508-44445528 1.0000 20 chr12:46662580-46662600 1.0000 20 chr6:137144198-137144218 1.0000 20 chr2:47748541-47748561 1.0000 20 chr19:3360742-3360762 1.0000 20 chr4:57301650-57301670 1.0000 20 chr4:129732171-129732191 1.0000 20 chr5:175963652-175963672 1.0000 20 chr6:119558594-119558614 1.0000 20 chr13:92001387-92001407 1.0000 20 chrX:16805036-16805056 1.0000 20 chr2:227700564-227700584 1.0000 20 chr1:154193763-154193783 1.0000 20 chr11:57243843-57243863 1.0000 20 chr3:14165795-14165815 1.0000 20 chr15:50647683-50647703 1.0000 20 chr16:75267960-75267980 1.0000 20 chr11:62324185-62324205 1.0000 20 chr14:64854346-64854366 1.0000 20 chr2:105945281-105945301 1.0000 20 chr13:76055040-76055060 1.0000 20 chr16:4321803-4321823 1.0000 20 chr1:16176438-16176458 1.0000 20 chr21:46340268-46340288 1.0000 20 chr3:40499033-40499053 1.0000 20 chr6:26365746-26365766 1.0000 20 chr17:56327186-56327206 1.0000 20 chr11:32113041-32113061 1.0000 20 chr3:128902671-128902691 1.0000 20 chrX:57022023-57022043 1.0000 20 chr10:103590570-10359059 1.0000 20 chr3:15901718-15901738 1.0000 20 chr19:34895515-34895535 1.0000 20 chr4:164416039-164416059 1.0000 20 chr2:113012350-113012370 1.0000 20 chr15:34330791-34330811 1.0000 20 chr7:150020091-150020111 1.0000 20 chr15:41952993-41953013 1.0000 20 chr6:34359658-34359678 1.0000 20 chr1:78148944-78148964 1.0000 20 chr4:53579118-53579138 1.0000 20 chr2:62536962-62536982 1.0000 20 chr6:8102542-8102562 1.0000 20 chr3:185655203-185655223 1.0000 20 chr22:44419909-44419929 1.0000 20 chr1:38273487-38273507 1.0000 20 chr1:23671209-23671229 1.0000 20 chr2:70314086-70314106 1.0000 20 chr17:16256436-16256456 1.0000 20 chr14:23355867-23355887 1.0000 20 chr17:49244119-49244139 1.0000 20 chr16:68298730-68298750 1.0000 20 chr22:50353850-50353870 1.0000 20 chr6:31588623-31588643 1.0000 20 chr6:41675626-41675646 1.0000 20 chr16:2255806-2255826 1.0000 20 chr8:86090051-86090071 1.0000 20 chr19:2290191-2290211 1.0000 20 chr10:88731300-88731320 1.0000 20 chr1:244998596-244998616 1.0000 20 chr7:98978972-98978992 1.0000 20 chr3:47017919-47017939 1.0000 20 chr6:76311963-76311983 1.0000 20 chr14:59950734-59950754 1.0000 20 chr15:41407849-41407869 1.0000 20 chr9:130565377-130565397 1.0000 20 chr9:131581219-131581239 1.0000 20 chr5:180670721-180670741 1.0000 20 chr2:238601350-238601370 1.0000 20 chr16:2059958-2059978 1.0000 20 chr19:50393428-50393448 1.0000 20 chr9:66457400-66457420 1.0000 20 chr3:48342892-48342912 1.0000 20 chr7:100487135-100487155 1.0000 20 chr2:74211992-74212012 1.0000 20 chr5:60241206-60241226 1.0000 20 chr19:17970926-17970946 1.0000 20 chr5:170815563-170815583 1.0000 20 chr17:79895294-79895314 1.0000 20 chr20:26189551-26189571 1.0000 20 chr9:133569268-133569288 1.0000 20 chr5:157285913-157285933 1.0000 20 chr15:75076060-75076080 1.0000 20 chr12:25102020-25102040 1.0000 20 chr17:12921115-12921135 1.0000 20 chr16:11348869-11348889 1.0000 20 chr7:26241824-26241844 1.0000 20 chr20:26190015-26190035 1.0000 20 chr6:44191541-44191561 1.0000 20 chr4:95129167-95129187 1.0000 20 chr13:28196027-28196047 1.0000 20 chr6:43543604-43543624 1.0000 20 chr11:60718868-60718888 1.0000 20 chr10:43916013-43916033 1.0000 20 chr8:144373713-144373733 1.0000 20 chr18:23806630-23806650 1.0000 20 chr22:19159184-19159204 1.0000 20 chr2:238970447-238970467 1.0000 20 chr20:4795538-4795558 1.0000 20 chr7:112430200-112430220 1.0000 20 chr2:241499640-241499660 1.0000 20 chr5:43120967-43120987 1.0000 20 chr9:140312161-140312181 1.0000 20 chr20:10652253-10652273 1.0000 20 chr3:133524697-133524717 1.0000 20 chr1:156783745-156783765 1.0000 20 chr16:30103689-30103709 1.0000 20 chr12:64615986-64616006 1.0000 20 chr16:21531164-21531184 1.0000 20 chr21:34697433-34697453 1.0000 20 chr5:89770208-89770228 1.0000 20 chr16:72042781-72042801 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_MYC/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/MYC.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.147 C 0.341 G 0.366 T 0.147 Background letter frequencies (from file dataset with add-one prior applied): A 0.147 C 0.341 G 0.366 T 0.147 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CCACGTGS MEME-1 width = 8 sites = 36 llr = 260 E-value = 3.4e-013 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCACGTGS MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1:a::::: pos.-specific C 6a:9:1:4 probability G 2:::a:95 matrix T 1::1:9:1 bits 2.8 2.5 * 2.2 * 1.9 * * Relative 1.7 ** * Entropy 1.4 ** ** (10.4 bits) 1.1 ****** 0.8 ****** 0.6 ****** 0.3 ******** 0.0 -------- Multilevel CCACGTGG consensus G C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACGTGS MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:156783745-156783765 5 4.20e-05 AGCA CCACGTGG CGCCCGTC chr17:49244119-49244139 2 4.20e-05 C CCACGTGG CCTCCGCGGG chr10:104474566-10447458 3 4.20e-05 AG CCACGTGG CGCGAAGTGC chr2:192543532-192543552 13 4.20e-05 CCTCCCCCAC CCACGTGG chr10:88726458-88726478 11 4.20e-05 gccgctaggg ccacgtgg ag chr3:97690814-97690834 11 4.20e-05 GCGGCGCAGC CCACGTGG AA chr12:121734257-12173427 3 4.20e-05 CT CCACGTGG CGGGGCGTGG chr2:241499640-241499660 7 8.11e-05 CGCCGT CCACGTGC ACCGGG chr2:70314086-70314106 2 8.11e-05 C CCACGTGC CCGCCCGCGC chr2:113012350-113012370 5 8.11e-05 CGGC CCACGTGC TCCCCACG chr1:53792458-53792478 9 8.11e-05 GGCTGCAG CCACGTGC GCGC chr19:50393428-50393448 3 9.80e-05 GA CCACGTGT ACGAGGCCAG chr2:242641122-242641142 4 9.80e-05 GGA CCACGTGT TTGCGTTTG chr14:50863481-50863501 10 9.80e-05 GGAGCGGTG CCACGTGT TGG chr2:238970447-238970467 12 1.96e-04 GAGACCCGAA GCACGTGG T chr9:130565377-130565397 6 1.96e-04 CGACG ACACGTGG GCCTGCG chr16:75267960-75267980 1 1.96e-04 . acacgtgg acgcacacac chr15:50647683-50647703 5 1.96e-04 ACGG CCATGTGC GCGGCGGA chr4:57301650-57301670 7 1.96e-04 CCGAAA GCACGTGG AAGGAC chr17:34890827-34890847 5 1.96e-04 GCGC GCACGTGG CTTGGCCG chr8:143534558-143534578 4 2.62e-04 cat gcacgtgc gtgcccgtc chr2:174219973-174219993 10 2.62e-04 AAGCCCTAG GCACGTGC GTC chr22:43582860-43582880 12 2.62e-04 cccggccgcc gcacgtgc c chr15:75495159-75495179 12 2.62e-04 CCTGCTGGAT GCACGTGC G chr2:85766930-85766950 13 3.57e-04 CGTGTTTGCC GCATGTGG chr6:26365746-26365766 8 3.83e-04 catgtgt ACATGTGC ACACT chr7:44836652-44836672 1 4.01e-04 . TCATGTGG CCGCGCCCTG chr16:11348869-11348889 1 4.42e-04 . CCACGTAG TGCTCCAGCA chr16:2059958-2059978 10 5.43e-04 TCCGCGCGG CCACGCGG CCA chr7:98978972-98978992 13 5.43e-04 GGGAGTATGG TCATGTGT chr10:120924981-12092500 11 5.43e-04 cagcccgact ccacgcgg cc chr19:46854077-46854097 11 5.74e-04 tgcttggctc ccacgttc ag chr6:43543604-43543624 6 6.79e-04 TAGCG CCACGCGC CGAGAGC chr20:26190015-26190035 9 6.79e-04 CTCAGGAC CCACGCGC GGAC chr10:88731300-88731320 5 7.18e-04 GTGT CCACGCGT GTGGCCCC chr6:170125053-170125073 13 7.74e-04 GAGATTCGGC CCTCGTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACGTGS MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:156783745-156783765 4.2e-05 4_[+1]_8 chr17:49244119-49244139 4.2e-05 1_[+1]_11 chr10:104474566-10447458 4.2e-05 2_[+1]_10 chr2:192543532-192543552 4.2e-05 12_[+1] chr10:88726458-88726478 4.2e-05 10_[+1]_2 chr3:97690814-97690834 4.2e-05 10_[+1]_2 chr12:121734257-12173427 4.2e-05 2_[+1]_10 chr2:241499640-241499660 8.1e-05 6_[+1]_6 chr2:70314086-70314106 8.1e-05 1_[+1]_11 chr2:113012350-113012370 8.1e-05 4_[+1]_8 chr1:53792458-53792478 8.1e-05 8_[+1]_4 chr19:50393428-50393448 9.8e-05 2_[+1]_10 chr2:242641122-242641142 9.8e-05 3_[+1]_9 chr14:50863481-50863501 9.8e-05 9_[+1]_3 chr2:238970447-238970467 0.0002 11_[+1]_1 chr9:130565377-130565397 0.0002 5_[+1]_7 chr16:75267960-75267980 0.0002 [+1]_12 chr15:50647683-50647703 0.0002 4_[+1]_8 chr4:57301650-57301670 0.0002 6_[+1]_6 chr17:34890827-34890847 0.0002 4_[+1]_8 chr8:143534558-143534578 0.00026 3_[+1]_9 chr2:174219973-174219993 0.00026 9_[+1]_3 chr22:43582860-43582880 0.00026 11_[+1]_1 chr15:75495159-75495179 0.00026 11_[+1]_1 chr2:85766930-85766950 0.00036 12_[+1] chr6:26365746-26365766 0.00038 7_[+1]_5 chr7:44836652-44836672 0.0004 [+1]_12 chr16:11348869-11348889 0.00044 [+1]_12 chr16:2059958-2059978 0.00054 9_[+1]_3 chr7:98978972-98978992 0.00054 12_[+1] chr10:120924981-12092500 0.00054 10_[+1]_2 chr19:46854077-46854097 0.00057 10_[+1]_2 chr6:43543604-43543624 0.00068 5_[+1]_7 chr20:26190015-26190035 0.00068 8_[+1]_4 chr10:88731300-88731320 0.00072 4_[+1]_8 chr6:170125053-170125073 0.00077 12_[+1] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACGTGS MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCACGTGS width=8 seqs=36 chr1:156783745-156783765 ( 5) CCACGTGG 1 chr17:49244119-49244139 ( 2) CCACGTGG 1 chr10:104474566-10447458 ( 3) CCACGTGG 1 chr2:192543532-192543552 ( 13) CCACGTGG 1 chr10:88726458-88726478 ( 11) CCACGTGG 1 chr3:97690814-97690834 ( 11) CCACGTGG 1 chr12:121734257-12173427 ( 3) CCACGTGG 1 chr2:241499640-241499660 ( 7) CCACGTGC 1 chr2:70314086-70314106 ( 2) CCACGTGC 1 chr2:113012350-113012370 ( 5) CCACGTGC 1 chr1:53792458-53792478 ( 9) CCACGTGC 1 chr19:50393428-50393448 ( 3) CCACGTGT 1 chr2:242641122-242641142 ( 4) CCACGTGT 1 chr14:50863481-50863501 ( 10) CCACGTGT 1 chr2:238970447-238970467 ( 12) GCACGTGG 1 chr9:130565377-130565397 ( 6) ACACGTGG 1 chr16:75267960-75267980 ( 1) ACACGTGG 1 chr15:50647683-50647703 ( 5) CCATGTGC 1 chr4:57301650-57301670 ( 7) GCACGTGG 1 chr17:34890827-34890847 ( 5) GCACGTGG 1 chr8:143534558-143534578 ( 4) GCACGTGC 1 chr2:174219973-174219993 ( 10) GCACGTGC 1 chr22:43582860-43582880 ( 12) GCACGTGC 1 chr15:75495159-75495179 ( 12) GCACGTGC 1 chr2:85766930-85766950 ( 13) GCATGTGG 1 chr6:26365746-26365766 ( 8) ACATGTGC 1 chr7:44836652-44836672 ( 1) TCATGTGG 1 chr16:11348869-11348889 ( 1) CCACGTAG 1 chr16:2059958-2059978 ( 10) CCACGCGG 1 chr7:98978972-98978992 ( 13) TCATGTGT 1 chr10:120924981-12092500 ( 11) CCACGCGG 1 chr19:46854077-46854097 ( 11) CCACGTTC 1 chr6:43543604-43543624 ( 6) CCACGCGC 1 chr20:26190015-26190035 ( 9) CCACGCGC 1 chr10:88731300-88731320 ( 5) CCACGCGT 1 chr6:170125053-170125073 ( 13) CCTCGTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACGTGS MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.33539 E= 3.4e-013 -82 91 -72 -140 -1181 155 -1181 -1181 273 -1181 -1181 -240 -1181 134 -1181 -8 -1181 -1181 145 -1181 -1181 -129 -1181 255 -240 -1181 137 -240 -1181 8 45 -8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACGTGS MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 3.4e-013 0.083333 0.638889 0.222222 0.055556 0.000000 1.000000 0.000000 0.000000 0.972222 0.000000 0.000000 0.027778 0.000000 0.861111 0.000000 0.138889 0.000000 0.000000 1.000000 0.000000 0.000000 0.138889 0.000000 0.861111 0.027778 0.000000 0.944444 0.027778 0.000000 0.361111 0.500000 0.138889 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACGTGS MEME-1 regular expression -------------------------------------------------------------------------------- [CG]CACGTG[GC] -------------------------------------------------------------------------------- Time 2.21 secs. ******************************************************************************** ******************************************************************************** MOTIF WAAWTAAC MEME-2 width = 8 sites = 2 llr = 26 E-value = 8.9e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif WAAWTAAC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 5aa5:aa: pos.-specific C :::::::a probability G :::::::: matrix T 5::5a::: bits 2.8 ** *** 2.5 ** *** 2.2 ** *** 1.9 ** *** Relative 1.7 ******** Entropy 1.4 ******** (18.9 bits) 1.1 ******** 0.8 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel AAAATAAC consensus T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAAWTAAC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:62536962-62536982 5 2.02e-06 TTTC AAAATAAC TCAAGTCT chr3:14165795-14165815 12 2.02e-06 GCGGTAGTGA TAATTAAC C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAAWTAAC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:62536962-62536982 2e-06 4_[+2]_8 chr3:14165795-14165815 2e-06 11_[+2]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAAWTAAC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WAAWTAAC width=8 seqs=2 chr2:62536962-62536982 ( 5) AAAATAAC 1 chr3:14165795-14165815 ( 12) TAATTAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAAWTAAC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.6653 E= 8.9e+002 176 -765 -765 176 276 -765 -765 -765 276 -765 -765 -765 176 -765 -765 176 -765 -765 -765 276 276 -765 -765 -765 276 -765 -765 -765 -765 155 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAAWTAAC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 8.9e+002 0.500000 0.000000 0.000000 0.500000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAAWTAAC MEME-2 regular expression -------------------------------------------------------------------------------- [AT]AA[AT]TAAC -------------------------------------------------------------------------------- Time 3.12 secs. ******************************************************************************** ******************************************************************************** MOTIF WTKTGAAA MEME-3 width = 8 sites = 2 llr = 25 E-value = 5.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif WTKTGAAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 5::::aaa pos.-specific C :::::::: probability G ::5:a::: matrix T 5a5a:::: bits 2.8 * * *** 2.5 * * *** 2.2 * * *** 1.9 * * *** Relative 1.7 ** * *** Entropy 1.4 ** ***** (18.2 bits) 1.1 ******** 0.8 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel ATGTGAAA consensus T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTKTGAAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr4:110736976-110736996 9 1.09e-06 GCCGGAGG ATTTGAAA ATGC chr19:3360742-3360762 12 3.79e-06 CGGGACGGTG TTGTGAAA C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTKTGAAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:110736976-110736996 1.1e-06 8_[+3]_4 chr19:3360742-3360762 3.8e-06 11_[+3]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTKTGAAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WTKTGAAA width=8 seqs=2 chr4:110736976-110736996 ( 9) ATTTGAAA 1 chr19:3360742-3360762 ( 12) TTGTGAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTKTGAAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.6653 E= 5.4e+003 176 -765 -765 176 -765 -765 -765 276 -765 -765 45 176 -765 -765 -765 276 -765 -765 145 -765 276 -765 -765 -765 276 -765 -765 -765 276 -765 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTKTGAAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 5.4e+003 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTKTGAAA MEME-3 regular expression -------------------------------------------------------------------------------- [AT]T[GT]TGAAA -------------------------------------------------------------------------------- Time 6.47 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCTTCTC MEME-4 width = 8 sites = 7 llr = 66 E-value = 7.7e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCTTCTC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :1:::::: pos.-specific C a:9::a3a probability G :6:::::: matrix T :31aa:7: bits 2.8 ** 2.5 ** 2.2 ** 1.9 ** Relative 1.7 * ***** Entropy 1.4 * ***** (13.5 bits) 1.1 * ****** 0.8 * ****** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel CGCTTCTC consensus T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCTTCTC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:1864276-1864296 13 6.31e-06 CCCTTCCCCC CTCTTCTC chr17:12921115-12921135 13 2.20e-05 CGACGGTCCG CGCTTCTC chr12:49318580-49318600 10 2.20e-05 GAAGGCTGG CGCTTCTC GGA chr8:145514992-145515012 2 2.20e-05 C CGCTTCTC CGGCCGCACG chr7:112430200-112430220 2 4.06e-05 C CATTTCTC CCTACCTGAC chr10:21822868-21822888 11 5.52e-05 CCTCCCAGGC CTCTTCCC GA chr5:81573999-81574019 10 9.17e-05 CTGGAGCGG CGCTTCCC CGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCTTCTC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:1864276-1864296 6.3e-06 12_[+4] chr17:12921115-12921135 2.2e-05 12_[+4] chr12:49318580-49318600 2.2e-05 9_[+4]_3 chr8:145514992-145515012 2.2e-05 1_[+4]_11 chr7:112430200-112430220 4.1e-05 1_[+4]_11 chr10:21822868-21822888 5.5e-05 10_[+4]_2 chr5:81573999-81574019 9.2e-05 9_[+4]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCTTCTC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCTTCTC width=8 seqs=7 chr19:1864276-1864296 ( 13) CTCTTCTC 1 chr17:12921115-12921135 ( 13) CGCTTCTC 1 chr12:49318580-49318600 ( 10) CGCTTCTC 1 chr8:145514992-145515012 ( 2) CGCTTCTC 1 chr7:112430200-112430220 ( 2) CATTTCTC 1 chr10:21822868-21822888 ( 11) CTCTTCCC 1 chr5:81573999-81574019 ( 10) CGCTTCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCTTCTC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.69928 E= 7.7e+003 -945 155 -945 -945 -4 -945 64 96 -945 133 -945 -4 -945 -945 -945 277 -945 -945 -945 277 -945 155 -945 -945 -945 -25 -945 228 -945 155 -945 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCTTCTC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 7.7e+003 0.000000 1.000000 0.000000 0.000000 0.142857 0.000000 0.571429 0.285714 0.000000 0.857143 0.000000 0.142857 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.285714 0.000000 0.714286 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCTTCTC MEME-4 regular expression -------------------------------------------------------------------------------- C[GT]CTTC[TC]C -------------------------------------------------------------------------------- Time 9.54 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAKATGG MEME-5 width = 8 sites = 2 llr = 25 E-value = 1.3e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAKATGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A aaa:a::: pos.-specific C :::::::: probability G :::5::aa matrix T :::5:a:: bits 2.8 *** ** 2.5 *** ** 2.2 *** ** 1.9 *** ** Relative 1.7 *** ** Entropy 1.4 *** **** (17.9 bits) 1.1 ******** 0.8 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel AAAGATGG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAKATGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:126102006-126102026 1 1.35e-06 . AAATATGG GTGATGAAGG chr20:42086882-42086902 5 4.72e-06 CCTC AAAGATGG CGACGGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAKATGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:126102006-126102026 1.4e-06 [+5]_12 chr20:42086882-42086902 4.7e-06 4_[+5]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAKATGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAKATGG width=8 seqs=2 chr6:126102006-126102026 ( 1) AAATATGG 1 chr20:42086882-42086902 ( 5) AAAGATGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAKATGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.89767 E= 1.3e+004 276 -765 -765 -765 276 -765 -765 -765 276 -765 -765 -765 -765 -765 45 176 276 -765 -765 -765 -765 -765 -765 276 -765 -765 145 -765 -765 -765 145 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAKATGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.3e+004 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.500000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAKATGG MEME-5 regular expression -------------------------------------------------------------------------------- AAA[GT]ATGG -------------------------------------------------------------------------------- Time 12.53 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:53400827-53400847 8.09e-01 20 chr3:184032667-184032687 1.00e+00 20 chr3:8809373-8809393 9.73e-01 20 chr11:61061870-61061890 1.91e-01 20 chr10:103893414-10389343 6.44e-01 20 chr17:1961645-1961665 3.31e-01 20 chr1:53792458-53792478 1.05e-01 8_[+1(8.11e-05)]_4 chr8:82193018-82193038 8.47e-01 20 chr19:30433645-30433665 9.99e-01 20 chr9:2157932-2157952 2.41e-01 20 chr12:3861563-3861583 5.61e-01 20 chr2:43454322-43454342 1.00e+00 20 chr10:76995338-76995358 3.44e-01 20 chr2:20550198-20550218 9.95e-01 20 chr9:66455773-66455793 8.15e-01 20 chr11:11642665-11642685 5.20e-02 20 chr4:88141460-88141480 9.97e-01 20 chr12:121734257-12173427 4.13e-02 2_[+1(4.20e-05)]_10 chr9:86594627-86594647 3.71e-01 20 chr20:26189323-26189343 9.39e-01 20 chr6:167368829-167368849 5.54e-01 20 chr17:34890827-34890847 7.83e-02 20 chr3:97690814-97690834 2.58e-03 10_[+1(4.20e-05)]_2 chr12:21810347-21810367 8.09e-01 20 chr1:165797110-165797130 8.88e-01 20 chr17:80057018-80057038 9.99e-01 20 chr12:131357189-13135720 9.99e-01 20 chr8:145514992-145515012 6.34e-02 1_[+4(2.20e-05)]_11 chrX:48326709-48326729 1.50e-01 20 chr2:183989555-183989575 2.40e-01 20 chr22:37881197-37881217 8.90e-01 20 chr10:21822868-21822888 8.23e-02 10_[+4(5.52e-05)]_2 chr17:7211612-7211632 8.17e-01 20 chr13:30169295-30169315 7.30e-01 20 chr6:73332386-73332406 6.49e-01 20 chr7:138720676-138720696 9.52e-01 20 chr1:245082244-245082264 3.64e-01 20 chr16:88878267-88878287 7.56e-02 20 chrX:48433160-48433180 7.63e-01 20 chr14:88237723-88237743 1.58e-01 20 chr17:61778062-61778082 9.96e-01 20 chr3:12526150-12526170 8.40e-01 20 chr11:107729318-10772933 9.90e-01 20 chr5:81573999-81574019 1.82e-01 9_[+4(9.17e-05)]_3 chr14:50863481-50863501 5.97e-02 9_[+1(9.80e-05)]_3 chr17:27052971-27052991 3.22e-01 20 chr2:75062130-75062150 8.98e-01 20 chr4:57302483-57302503 4.95e-02 20 chr1:155164313-155164333 9.34e-01 20 chr10:88726458-88726478 2.70e-02 10_[+1(4.20e-05)]_2 chr6:170125053-170125073 5.63e-02 20 chrX:10079552-10079572 1.61e-01 20 chr9:37592233-37592253 8.57e-01 20 chr7:44836652-44836672 4.48e-02 20 chr20:2633469-2633489 7.77e-01 20 chr9:21802859-21802879 4.07e-01 20 chr15:75495159-75495179 9.46e-02 20 chr1:154972361-154972381 9.84e-01 20 chr3:50378052-50378072 9.35e-01 20 chr17:37356863-37356883 7.06e-01 20 chr3:167814036-167814056 9.76e-01 20 chr6:151187449-151187469 8.53e-01 20 chr16:21552612-21552632 9.15e-01 20 chr17:28088222-28088242 9.96e-01 20 chr14:91884531-91884551 9.99e-01 20 chr2:192543532-192543552 2.23e-02 12_[+1(4.20e-05)] chr2:85766930-85766950 2.53e-02 20 chr2:10260776-10260796 6.26e-01 20 chr19:18544006-18544026 6.12e-01 20 chr17:79632858-79632878 3.84e-01 20 chr19:54041144-54041164 4.58e-01 20 chr10:105451815-10545183 4.83e-01 20 chr7:22893958-22893978 4.39e-01 20 chr17:66287619-66287639 9.74e-01 20 chr5:44809206-44809226 5.61e-01 20 chr20:42086882-42086902 5.29e-03 4_[+5(4.72e-06)]_8 chr22:43582860-43582880 1.31e-01 20 chr8:42911807-42911827 8.75e-01 20 chr10:104474566-10447458 3.85e-02 2_[+1(4.20e-05)]_10 chr17:7476964-7476984 9.93e-01 20 chrX:53101088-53101108 6.08e-01 20 chr2:242641122-242641142 6.75e-02 3_[+1(9.80e-05)]_9 chr2:174219973-174219993 1.83e-01 20 chr2:207024814-207024834 3.22e-01 20 chr17:79213389-79213409 9.35e-01 20 chr19:18700427-18700447 3.31e-01 20 chr3:12526349-12526369 1.11e-01 20 chr1:43148713-43148733 5.32e-01 20 chr1:90309028-90309048 9.99e-01 20 chr2:160761207-160761227 9.31e-01 20 chr6:76311764-76311784 8.89e-01 20 chr12:49318580-49318600 1.76e-03 9_[+4(2.20e-05)]_3 chr5:72794485-72794505 8.30e-01 20 chr1:107599683-107599703 5.76e-01 20 chr19:1857180-1857200 7.87e-01 20 chr19:1592325-1592345 9.98e-02 20 chr9:100881306-100881326 7.61e-01 20 chr14:102554908-10255492 5.80e-01 20 chr20:305147-305167 7.55e-01 20 chr17:76130201-76130221 4.96e-01 20 chr6:3259377-3259397 8.52e-01 20 chr17:35306487-35306507 8.44e-01 20 chr19:1864276-1864296 3.37e-02 12_[+4(6.31e-06)] chr2:232328629-232328649 4.89e-02 20 chr18:29672849-29672869 4.58e-01 20 chr15:79272092-79272112 5.52e-01 20 chr16:89045057-89045077 9.98e-01 20 chr6:33396188-33396208 2.63e-01 20 chr9:113018385-113018405 4.51e-01 20 chr12:6977071-6977091 1.67e-01 20 chr9:139796702-139796722 1.09e-01 20 chr10:90640446-90640466 9.56e-01 20 chr4:73935135-73935155 9.23e-01 20 chr18:77748292-77748312 7.62e-01 20 chr10:120924981-12092500 1.86e-01 20 chr4:103997520-103997540 9.74e-01 20 chr10:104210271-10421029 9.97e-01 20 chr3:50329479-50329499 2.50e-01 20 chr8:144680396-144680416 8.04e-01 20 chr1:19923921-19923941 4.10e-01 20 chr6:711295-711315 5.33e-01 20 chr13:99852798-99852818 7.67e-01 20 chr8:74205687-74205707 2.54e-01 20 chr8:143534558-143534578 2.06e-01 20 chr7:92462452-92462472 1.95e-01 20 chr22:41809890-41809910 1.00e+00 20 chr8:55014263-55014283 8.63e-01 20 chr3:38035898-38035918 9.97e-01 20 chr12:6677342-6677362 2.21e-01 20 chr10:71993365-71993385 8.68e-01 20 chr4:110736976-110736996 3.64e-04 8_[+3(1.09e-06)]_4 chr6:126102006-126102026 1.51e-04 [+5(1.35e-06)]_12 chr8:117779087-117779107 9.82e-02 20 chr9:100747210-100747230 9.10e-01 20 chr19:46854077-46854097 7.13e-02 20 chr5:10250628-10250648 5.19e-01 20 chr1:8938349-8938369 5.00e-01 20 chr10:70716151-70716171 9.56e-01 20 chr1:44445508-44445528 8.47e-01 20 chr12:46662580-46662600 8.09e-02 20 chr6:137144198-137144218 9.51e-01 20 chr2:47748541-47748561 5.72e-01 20 chr19:3360742-3360762 7.54e-03 11_[+3(3.79e-06)]_1 chr4:57301650-57301670 1.49e-03 20 chr4:129732171-129732191 1.20e-01 20 chr5:175963652-175963672 8.42e-02 20 chr6:119558594-119558614 8.21e-01 20 chr13:92001387-92001407 5.42e-01 20 chrX:16805036-16805056 9.98e-01 20 chr2:227700564-227700584 9.19e-01 20 chr1:154193763-154193783 9.59e-01 20 chr11:57243843-57243863 1.00e+00 20 chr3:14165795-14165815 4.41e-04 11_[+2(2.02e-06)]_1 chr15:50647683-50647703 6.21e-02 20 chr16:75267960-75267980 1.58e-02 20 chr11:62324185-62324205 1.00e-01 20 chr14:64854346-64854366 1.49e-01 20 chr2:105945281-105945301 5.33e-01 20 chr13:76055040-76055060 3.20e-01 20 chr16:4321803-4321823 3.73e-01 20 chr1:16176438-16176458 2.48e-01 20 chr21:46340268-46340288 6.70e-01 20 chr3:40499033-40499053 7.49e-01 20 chr6:26365746-26365766 2.77e-03 20 chr17:56327186-56327206 5.20e-01 20 chr11:32113041-32113061 9.86e-01 20 chr3:128902671-128902691 2.69e-01 20 chrX:57022023-57022043 6.15e-03 20 chr10:103590570-10359059 9.05e-01 20 chr3:15901718-15901738 9.99e-01 20 chr19:34895515-34895535 9.36e-01 20 chr4:164416039-164416059 2.81e-01 20 chr2:113012350-113012370 5.51e-02 4_[+1(8.11e-05)]_8 chr15:34330791-34330811 6.01e-01 20 chr7:150020091-150020111 9.64e-01 20 chr15:41952993-41953013 7.07e-01 20 chr6:34359658-34359678 4.71e-01 20 chr1:78148944-78148964 5.54e-02 20 chr4:53579118-53579138 1.63e-01 20 chr2:62536962-62536982 6.07e-06 4_[+2(2.02e-06)]_8 chr6:8102542-8102562 8.54e-01 20 chr3:185655203-185655223 2.09e-01 20 chr22:44419909-44419929 9.50e-01 20 chr1:38273487-38273507 7.01e-01 20 chr1:23671209-23671229 8.84e-01 20 chr2:70314086-70314106 5.31e-02 1_[+1(8.11e-05)]_11 chr17:16256436-16256456 9.90e-01 20 chr14:23355867-23355887 8.09e-01 20 chr17:49244119-49244139 4.13e-02 1_[+1(4.20e-05)]_11 chr16:68298730-68298750 5.35e-01 20 chr22:50353850-50353870 3.99e-01 20 chr6:31588623-31588643 5.70e-01 20 chr6:41675626-41675646 3.63e-01 20 chr16:2255806-2255826 9.98e-01 20 chr8:86090051-86090071 6.85e-01 20 chr19:2290191-2290211 3.63e-01 20 chr10:88731300-88731320 1.53e-01 20 chr1:244998596-244998616 3.78e-01 20 chr7:98978972-98978992 2.14e-02 20 chr3:47017919-47017939 9.91e-01 20 chr6:76311963-76311983 9.89e-01 20 chr14:59950734-59950754 1.01e-01 20 chr15:41407849-41407869 8.74e-01 20 chr9:130565377-130565397 4.59e-02 20 chr9:131581219-131581239 9.29e-01 20 chr5:180670721-180670741 8.16e-01 20 chr2:238601350-238601370 1.80e-01 20 chr16:2059958-2059978 3.89e-01 20 chr19:50393428-50393448 2.63e-02 2_[+1(9.80e-05)]_10 chr9:66457400-66457420 8.51e-01 20 chr3:48342892-48342912 6.59e-01 20 chr7:100487135-100487155 9.86e-01 20 chr2:74211992-74212012 9.91e-01 20 chr5:60241206-60241226 5.70e-01 20 chr19:17970926-17970946 9.47e-02 20 chr5:170815563-170815583 9.02e-01 20 chr17:79895294-79895314 1.09e-01 20 chr20:26189551-26189571 8.76e-01 20 chr9:133569268-133569288 1.10e-01 20 chr5:157285913-157285933 4.52e-01 20 chr15:75076060-75076080 8.66e-02 20 chr12:25102020-25102040 4.47e-01 20 chr17:12921115-12921135 3.94e-02 12_[+4(2.20e-05)] chr16:11348869-11348889 1.05e-01 20 chr7:26241824-26241844 9.32e-01 20 chr20:26190015-26190035 2.75e-01 20 chr6:44191541-44191561 8.37e-01 20 chr4:95129167-95129187 9.92e-01 20 chr13:28196027-28196047 2.61e-01 20 chr6:43543604-43543624 3.24e-01 20 chr11:60718868-60718888 2.73e-01 20 chr10:43916013-43916033 1.00e+00 20 chr8:144373713-144373733 2.29e-01 20 chr18:23806630-23806650 4.72e-01 20 chr22:19159184-19159204 8.33e-01 20 chr2:238970447-238970467 6.10e-02 20 chr20:4795538-4795558 3.02e-02 20 chr7:112430200-112430220 7.06e-03 1_[+4(4.06e-05)]_11 chr2:241499640-241499660 3.85e-02 6_[+1(8.11e-05)]_6 chr5:43120967-43120987 5.90e-01 20 chr9:140312161-140312181 3.68e-01 20 chr20:10652253-10652273 7.03e-01 20 chr3:133524697-133524717 6.86e-01 20 chr1:156783745-156783765 3.10e-02 4_[+1(4.20e-05)]_8 chr16:30103689-30103709 5.42e-02 20 chr12:64615986-64616006 9.96e-01 20 chr16:21531164-21531184 8.72e-01 20 chr21:34697433-34697453 2.89e-01 20 chr5:89770208-89770228 9.92e-01 20 chr16:72042781-72042801 8.07e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n10.farnam.hpc.yale.internal ********************************************************************************