******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/MYB.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr11:2407212-2407232 1.0000 20 chr14:89290854-89290874 1.0000 20 chr13:51467862-51467882 1.0000 20 chr14:89896037-89896057 1.0000 20 chr3:152040786-152040806 1.0000 20 chr1:156462545-156462565 1.0000 20 chr4:185505104-185505124 1.0000 20 chr18:11511583-11511603 1.0000 20 chr15:54875170-54875190 1.0000 20 chr4:27721748-27721768 1.0000 20 chr6:26361074-26361094 1.0000 20 chr5:111452282-111452302 1.0000 20 chr6:167412860-167412880 1.0000 20 chr1:150123777-150123797 1.0000 20 chr7:101384424-101384444 1.0000 20 chr10:52257618-52257638 1.0000 20 chr19:1648539-1648559 1.0000 20 chr8:74206492-74206512 1.0000 20 chr10:75910688-75910708 1.0000 20 chr10:98478279-98478299 1.0000 20 chr9:123834288-123834308 1.0000 20 chr1:180123651-180123671 1.0000 20 chr9:139595902-139595922 1.0000 20 chrX:118816469-118816489 1.0000 20 chr17:74230532-74230552 1.0000 20 chr15:60877052-60877072 1.0000 20 chr4:122698404-122698424 1.0000 20 chr2:47210512-47210532 1.0000 20 chr2:237966762-237966782 1.0000 20 chr21:43706743-43706763 1.0000 20 chr12:4938830-4938850 1.0000 20 chr19:40192098-40192118 1.0000 20 chr20:48422012-48422032 1.0000 20 chr8:119501218-119501238 1.0000 20 chr1:208035433-208035453 1.0000 20 chr16:78132195-78132215 1.0000 20 chr14:22929636-22929656 1.0000 20 chr4:40464550-40464570 1.0000 20 chr4:156895711-156895731 1.0000 20 chr2:136894262-136894282 1.0000 20 chr8:81046984-81047004 1.0000 20 chr3:15839682-15839702 1.0000 20 chr8:103899343-103899363 1.0000 20 chr18:72707013-72707033 1.0000 20 chr12:110841652-11084167 1.0000 20 chr1:117110997-117111017 1.0000 20 chr8:58165311-58165331 1.0000 20 chrX:1600811-1600831 1.0000 20 chr7:128320203-128320223 1.0000 20 chrX:71401506-71401526 1.0000 20 chr6:5261087-5261107 1.0000 20 chr18:4392059-4392079 1.0000 20 chr18:24290647-24290667 1.0000 20 chr19:19144331-19144351 1.0000 20 chr6:16483980-16484000 1.0000 20 chr19:10353659-10353679 1.0000 20 chr6:24522838-24522858 1.0000 20 chr11:118272169-11827218 1.0000 20 chr5:14156899-14156919 1.0000 20 chr2:46070527-46070547 1.0000 20 chr7:105447315-105447335 1.0000 20 chr19:16477359-16477379 1.0000 20 chr1:24236814-24236834 1.0000 20 chr5:145553323-145553343 1.0000 20 chr22:40808668-40808688 1.0000 20 chr16:75109276-75109296 1.0000 20 chr6:21603823-21603843 1.0000 20 chrX:7028488-7028508 1.0000 20 chr14:77506887-77506907 1.0000 20 chr2:178499797-178499817 1.0000 20 chr22:50247136-50247156 1.0000 20 chr1:192547847-192547867 1.0000 20 chr15:66446543-66446563 1.0000 20 chr8:144544416-144544436 1.0000 20 chr7:31014538-31014558 1.0000 20 chr7:117228475-117228495 1.0000 20 chr16:10915260-10915280 1.0000 20 chr1:244998667-244998687 1.0000 20 chr1:202129195-202129215 1.0000 20 chr6:28351191-28351211 1.0000 20 chr15:78342609-78342629 1.0000 20 chr22:35790113-35790133 1.0000 20 chr16:11296656-11296676 1.0000 20 chr12:103496212-10349623 1.0000 20 chr12:102455043-10245506 1.0000 20 chr3:52444608-52444628 1.0000 20 chr17:71228637-71228657 1.0000 20 chr4:113200350-113200370 1.0000 20 chr7:107384118-107384138 1.0000 20 chr17:72734500-72734520 1.0000 20 chr5:55274005-55274025 1.0000 20 chr14:58666706-58666726 1.0000 20 chr9:130890608-130890628 1.0000 20 chr5:50152775-50152795 1.0000 20 chr6:31794957-31794977 1.0000 20 chr21:43956133-43956153 1.0000 20 chr2:96890953-96890973 1.0000 20 chr11:113545945-11354596 1.0000 20 chr13:29004238-29004258 1.0000 20 chr12:13745657-13745677 1.0000 20 chr4:186231142-186231162 1.0000 20 chr16:10874697-10874717 1.0000 20 chr17:7123144-7123164 1.0000 20 chr21:43948073-43948093 1.0000 20 chr16:10906611-10906631 1.0000 20 chr9:112919336-112919356 1.0000 20 chr11:68518955-68518975 1.0000 20 chr14:66190291-66190311 1.0000 20 chr1:92942038-92942058 1.0000 20 chr19:16250767-16250787 1.0000 20 chr6:209997-210017 1.0000 20 chr10:74839717-74839737 1.0000 20 chr7:20323684-20323704 1.0000 20 chr6:31789711-31789731 1.0000 20 chr14:72085645-72085665 1.0000 20 chr17:33776802-33776822 1.0000 20 chr19:11681024-11681044 1.0000 20 chr8:58163466-58163486 1.0000 20 chr11:3806585-3806605 1.0000 20 chr11:34073094-34073114 1.0000 20 chr21:43653287-43653307 1.0000 20 chr6:11386732-11386752 1.0000 20 chr18:60828431-60828451 1.0000 20 chr3:111832923-111832943 1.0000 20 chr19:41903602-41903622 1.0000 20 chr13:46951819-46951839 1.0000 20 chr22:31886007-31886027 1.0000 20 chr16:51611787-51611807 1.0000 20 chr12:40656603-40656623 1.0000 20 chr2:179886178-179886198 1.0000 20 chr13:38923840-38923860 1.0000 20 chr4:2538170-2538190 1.0000 20 chr3:183229799-183229819 1.0000 20 chr6:15409162-15409182 1.0000 20 chr8:103937289-103937309 1.0000 20 chr6:31705886-31705906 1.0000 20 chr17:26385109-26385129 1.0000 20 chr2:26467635-26467655 1.0000 20 chr19:1095449-1095469 1.0000 20 chr12:57914747-57914767 1.0000 20 chr1:90158525-90158545 1.0000 20 chr3:159745796-159745816 1.0000 20 chr6:144472515-144472535 1.0000 20 chr7:155075738-155075758 1.0000 20 chr10:12085040-12085060 1.0000 20 chr12:82349538-82349558 1.0000 20 chr10:63721249-63721269 1.0000 20 chr5:138724394-138724414 1.0000 20 chr3:42054519-42054539 1.0000 20 chr1:167597470-167597490 1.0000 20 chr8:123800152-123800172 1.0000 20 chrX:48397855-48397875 1.0000 20 chr12:64173758-64173778 1.0000 20 chr3:48342883-48342903 1.0000 20 chr4:87882955-87882975 1.0000 20 chr6:144675280-144675300 1.0000 20 chr3:72898092-72898112 1.0000 20 chr18:60806072-60806092 1.0000 20 chr18:4320159-4320179 1.0000 20 chr6:365135-365155 1.0000 20 chr17:38719833-38719853 1.0000 20 chr17:68984271-68984291 1.0000 20 chr7:45018788-45018808 1.0000 20 chr19:16556285-16556305 1.0000 20 chr20:36156419-36156439 1.0000 20 chr1:9473803-9473823 1.0000 20 chr2:160751808-160751828 1.0000 20 chr7:8008781-8008801 1.0000 20 chr2:234132336-234132356 1.0000 20 chr2:95787643-95787663 1.0000 20 chr3:195908891-195908911 1.0000 20 chr1:151299981-151300001 1.0000 20 chr4:185275131-185275151 1.0000 20 chr9:6750870-6750890 1.0000 20 chr18:9066924-9066944 1.0000 20 chr1:173384786-173384806 1.0000 20 chr14:100481887-10048190 1.0000 20 chr5:176935988-176936008 1.0000 20 chr6:40219463-40219483 1.0000 20 chr20:18447910-18447930 1.0000 20 chrX:77906494-77906514 1.0000 20 chr1:87379930-87379950 1.0000 20 chr12:85921143-85921163 1.0000 20 chr3:111260974-111260994 1.0000 20 chr12:85818462-85818482 1.0000 20 chr10:17686020-17686040 1.0000 20 chr20:43150684-43150704 1.0000 20 chr13:25875684-25875704 1.0000 20 chr12:22562708-22562728 1.0000 20 chr2:42588484-42588504 1.0000 20 chr17:29862835-29862855 1.0000 20 chrX:48774717-48774737 1.0000 20 chr8:47829553-47829573 1.0000 20 chr6:43543892-43543912 1.0000 20 chr11:60157091-60157111 1.0000 20 chr13:49822047-49822067 1.0000 20 chr1:62902554-62902574 1.0000 20 chr8:37595220-37595240 1.0000 20 chr5:5422626-5422646 1.0000 20 chr16:29816890-29816910 1.0000 20 chr3:128564830-128564850 1.0000 20 chr7:8165975-8165995 1.0000 20 chr19:3185883-3185903 1.0000 20 chr4:175849531-175849551 1.0000 20 chr8:100845435-100845455 1.0000 20 chr7:102066469-102066489 1.0000 20 chr6:51166950-51166970 1.0000 20 chr17:65362741-65362761 1.0000 20 chr2:225873278-225873298 1.0000 20 chr21:45632386-45632406 1.0000 20 chr11:60134671-60134691 1.0000 20 chr2:134256895-134256915 1.0000 20 chr6:6943310-6943330 1.0000 20 chr15:96407809-96407829 1.0000 20 chr5:100225014-100225034 1.0000 20 chr21:19220682-19220702 1.0000 20 chr13:109815270-10981529 1.0000 20 chr1:117087623-117087643 1.0000 20 chr6:31510027-31510047 1.0000 20 chr8:95973024-95973044 1.0000 20 chr16:31433131-31433151 1.0000 20 chr1:63079083-63079103 1.0000 20 chr5:131756818-131756838 1.0000 20 chr7:35769063-35769083 1.0000 20 chr17:7387233-7387253 1.0000 20 chr15:100044525-10004454 1.0000 20 chr2:68430963-68430983 1.0000 20 chr15:78337016-78337036 1.0000 20 chr12:129314518-12931453 1.0000 20 chr4:77120190-77120210 1.0000 20 chr5:143186293-143186313 1.0000 20 chr7:150065210-150065230 1.0000 20 chr12:24064727-24064747 1.0000 20 chr19:6577619-6577639 1.0000 20 chr15:101507450-10150747 1.0000 20 chr10:90145772-90145792 1.0000 20 chr20:47226356-47226376 1.0000 20 chr5:180650104-180650124 1.0000 20 chr14:22961227-22961247 1.0000 20 chr19:11316765-11316785 1.0000 20 chr16:57076239-57076259 1.0000 20 chr14:98664996-98665016 1.0000 20 chr2:123464918-123464938 1.0000 20 chr2:133034632-133034652 1.0000 20 chr2:45957197-45957217 1.0000 20 chr9:101984413-101984433 1.0000 20 chr11:67035921-67035941 1.0000 20 chr19:49497119-49497139 1.0000 20 chr19:44455308-44455328 1.0000 20 chr6:31620604-31620624 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_MYB/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/MYB.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.261 C 0.238 G 0.258 T 0.243 Background letter frequencies (from file dataset with add-one prior applied): A 0.261 C 0.238 G 0.258 T 0.243 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF WRRCMGTT MEME-1 width = 8 sites = 31 llr = 213 E-value = 2.6e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif WRRCMGTT MEME-1 Description -------------------------------------------------------------------------------- Simplified A 466:4::: pos.-specific C :::a3::2 probability G 234:2a:: matrix T 4:::1:a8 bits 2.1 * * 1.9 * ** 1.7 * ** 1.4 * *** Relative 1.2 * *** Entropy 1.0 ** *** (9.9 bits) 0.8 *** *** 0.6 *** *** 0.4 **** *** 0.2 ******** 0.0 -------- Multilevel AAACAGTT consensus TGG C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRRCMGTT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr18:72707013-72707033 13 3.25e-05 CTGTGTGAAA AAACAGTT chr15:78337016-78337036 10 6.21e-05 aattaaatt aaaccgtt taa chr12:22562708-22562728 9 6.21e-05 TTGAAACC AAACCGTT GCAT chr14:66190291-66190311 2 6.21e-05 A AAACCGTT AAAAGGTTTG chr19:16477359-16477379 6 6.21e-05 TGCCG AAACCGTT GTTATTT chr1:90158525-90158545 5 9.42e-05 GAAT TAGCAGTT AGAAACCA chr19:11681024-11681044 4 9.42e-05 GTG TAGCAGTT GCAAGTGGC chr14:100481887-10048190 9 1.56e-04 GGTGAGTG TGACAGTT TGTA chr10:98478279-98478299 11 1.56e-04 GCAGACAGCA AGACAGTT TG chr8:123800152-123800172 8 2.02e-04 GCAGAGG TGACCGTT TAAAC chr6:16483980-16484000 1 2.02e-04 . GAACAGTT CAAAGCAACG chr5:111452282-111452302 3 2.02e-04 AG GAACAGTT CTGAAACTGA chr4:122698404-122698424 9 2.49e-04 CTGTGGTT GAACCGTT TCTC chr11:2407212-2407232 7 2.79e-04 actgcc aaactgtt attcaa chr1:117087623-117087643 3 3.11e-04 AA AGGCAGTT AGGCCGCAGG chr2:225873278-225873298 12 3.11e-04 TCCTTTGAAT TGGCAGTT G chr19:10353659-10353679 7 3.11e-04 GGAGCT TGGCAGTT ACACAC chr16:11296656-11296676 6 3.56e-04 ATTTT GAGCAGTT AGAGGCT chr12:102455043-10245506 2 4.19e-04 A AAGCGGTT GAGGAACTGT chr12:103496212-10349623 2 4.19e-04 t gagccgtt acagtaaccc chr13:25875684-25875704 2 4.66e-04 G TGACGGTT ACACTTCCGG chr5:176935988-176936008 7 4.66e-04 GGAAAC TGACGGTT TATCTG chr14:22961227-22961247 9 6.03e-04 CGTTCAGG AAACCGTC CCCA chr3:42054519-42054539 3 6.03e-04 TT AAACCGTC CACAAGTGAT chr1:202129195-202129215 5 6.03e-04 TCTG TAACCGTC ACAGGAAA chr11:68518955-68518975 9 6.81e-04 GCGGCCGT TGGCGGTT ggag chr5:138724394-138724414 13 8.35e-04 AGCACCTGTG AGGCTGTT chr6:144472515-144472535 12 8.95e-04 GCAGAGGGAG GAGCTGTT A chr3:111832923-111832943 13 9.57e-04 GCAGGTGCAT TAACGGTC chr14:89896037-89896057 13 9.86e-04 AACAACTGCC AAACTGTC chr8:37595220-37595240 13 1.06e-03 GGCTCTAATT TTACAGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRRCMGTT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr18:72707013-72707033 3.2e-05 12_[+1] chr15:78337016-78337036 6.2e-05 9_[+1]_3 chr12:22562708-22562728 6.2e-05 8_[+1]_4 chr14:66190291-66190311 6.2e-05 1_[+1]_11 chr19:16477359-16477379 6.2e-05 5_[+1]_7 chr1:90158525-90158545 9.4e-05 4_[+1]_8 chr19:11681024-11681044 9.4e-05 3_[+1]_9 chr14:100481887-10048190 0.00016 8_[+1]_4 chr10:98478279-98478299 0.00016 10_[+1]_2 chr8:123800152-123800172 0.0002 7_[+1]_5 chr6:16483980-16484000 0.0002 [+1]_12 chr5:111452282-111452302 0.0002 2_[+1]_10 chr4:122698404-122698424 0.00025 8_[+1]_4 chr11:2407212-2407232 0.00028 6_[+1]_6 chr1:117087623-117087643 0.00031 2_[+1]_10 chr2:225873278-225873298 0.00031 11_[+1]_1 chr19:10353659-10353679 0.00031 6_[+1]_6 chr16:11296656-11296676 0.00036 5_[+1]_7 chr12:102455043-10245506 0.00042 1_[+1]_11 chr12:103496212-10349623 0.00042 1_[+1]_11 chr13:25875684-25875704 0.00047 1_[+1]_11 chr5:176935988-176936008 0.00047 6_[+1]_6 chr14:22961227-22961247 0.0006 8_[+1]_4 chr3:42054519-42054539 0.0006 2_[+1]_10 chr1:202129195-202129215 0.0006 4_[+1]_8 chr11:68518955-68518975 0.00068 8_[+1]_4 chr5:138724394-138724414 0.00083 12_[+1] chr6:144472515-144472535 0.0009 11_[+1]_1 chr3:111832923-111832943 0.00096 12_[+1] chr14:89896037-89896057 0.00099 12_[+1] chr8:37595220-37595240 0.0011 12_[+1] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRRCMGTT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WRRCMGTT width=8 seqs=31 chr18:72707013-72707033 ( 13) AAACAGTT 1 chr15:78337016-78337036 ( 10) AAACCGTT 1 chr12:22562708-22562728 ( 9) AAACCGTT 1 chr14:66190291-66190311 ( 2) AAACCGTT 1 chr19:16477359-16477379 ( 6) AAACCGTT 1 chr1:90158525-90158545 ( 5) TAGCAGTT 1 chr19:11681024-11681044 ( 4) TAGCAGTT 1 chr14:100481887-10048190 ( 9) TGACAGTT 1 chr10:98478279-98478299 ( 11) AGACAGTT 1 chr8:123800152-123800172 ( 8) TGACCGTT 1 chr6:16483980-16484000 ( 1) GAACAGTT 1 chr5:111452282-111452302 ( 3) GAACAGTT 1 chr4:122698404-122698424 ( 9) GAACCGTT 1 chr11:2407212-2407232 ( 7) AAACTGTT 1 chr1:117087623-117087643 ( 3) AGGCAGTT 1 chr2:225873278-225873298 ( 12) TGGCAGTT 1 chr19:10353659-10353679 ( 7) TGGCAGTT 1 chr16:11296656-11296676 ( 6) GAGCAGTT 1 chr12:102455043-10245506 ( 2) AAGCGGTT 1 chr12:103496212-10349623 ( 2) GAGCCGTT 1 chr13:25875684-25875704 ( 2) TGACGGTT 1 chr5:176935988-176936008 ( 7) TGACGGTT 1 chr14:22961227-22961247 ( 9) AAACCGTC 1 chr3:42054519-42054539 ( 3) AAACCGTC 1 chr1:202129195-202129215 ( 5) TAACCGTC 1 chr11:68518955-68518975 ( 9) TGGCGGTT 1 chr5:138724394-138724414 ( 13) AGGCTGTT 1 chr6:144472515-144472535 ( 12) GAGCTGTT 1 chr3:111832923-111832943 ( 13) TAACGGTC 1 chr14:89896037-89896057 ( 13) AAACTGTC 1 chr8:37595220-37595240 ( 13) TTACAGTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRRCMGTT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.00527 E= 2.6e-003 68 -1160 -41 67 131 -1160 32 -291 131 -1160 46 -1160 -1160 207 -1160 -1160 57 44 -68 -91 -1160 -1160 195 -1160 -1160 -1160 -1160 204 -1160 -56 -1160 179 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRRCMGTT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 31 E= 2.6e-003 0.419355 0.000000 0.193548 0.387097 0.645161 0.000000 0.322581 0.032258 0.645161 0.000000 0.354839 0.000000 0.000000 1.000000 0.000000 0.000000 0.387097 0.322581 0.161290 0.129032 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.161290 0.000000 0.838710 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRRCMGTT MEME-1 regular expression -------------------------------------------------------------------------------- [AT][AG][AG]C[AC]GTT -------------------------------------------------------------------------------- Time 2.12 secs. ******************************************************************************** ******************************************************************************** MOTIF HRWAACTG MEME-2 width = 8 sites = 25 llr = 172 E-value = 1.4e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif HRWAACTG MEME-2 Description -------------------------------------------------------------------------------- Simplified A 442aa:2: pos.-specific C 322::a:: probability G :31::::a matrix T 214:::8: bits 2.1 * 1.9 *** * 1.7 *** * 1.4 *** * Relative 1.2 ***** Entropy 1.0 ***** (9.9 bits) 0.8 ***** 0.6 ***** 0.4 * ***** 0.2 ******** 0.0 -------- Multilevel AATAACTG consensus CGA A sequence TCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HRWAACTG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr16:78132195-78132215 9 1.68e-05 AATGAGTC AATAACTG TAGT chr12:4938830-4938850 2 1.68e-05 g aataactg atctagggtg chr15:60877052-60877072 4 1.68e-05 TTC AATAACTG ATCTGAAAC chr6:51166950-51166970 12 3.22e-05 GTGTGTTTTG CATAACTG C chr12:85921143-85921163 13 3.22e-05 gagacatttg cataactg chr15:66446543-66446563 13 3.22e-05 ACAACAACAT CATAACTG chr14:89896037-89896057 3 1.30e-04 GC AACAACTG CCAAACTGTC chr10:52257618-52257638 11 1.60e-04 TAACACTGTG CCTAACTG AA chr4:175849531-175849551 11 1.91e-04 aaccgcatcc tgtaactg ac chr5:50152775-50152795 13 2.74e-04 CATCATGTGA TAAAACTG chr16:10874697-10874717 1 4.01e-04 . CCAAACTG TGAAATTCCC chr21:43706743-43706763 5 4.81e-04 GAAG AGTAACAG ATCAGTAA chr5:111452282-111452302 12 4.81e-04 GGAACAGTTC TGAAACTG A chr2:45957197-45957217 1 6.13e-04 . AAAAACAG AAACCACACA chr19:11316765-11316785 4 6.13e-04 gtg aggaactg agaaacagg chr12:102455043-10245506 11 6.13e-04 AAAGCGGTTG AGGAACTG TA chr3:15839682-15839702 2 6.13e-04 G ACTAACAG TGGTTTTAGC chr1:208035433-208035453 11 6.13e-04 tctcctgtgg tcaaactg ta chr17:38719833-38719853 5 6.61e-04 GCAG AACAACAG ATCCTCCA chr4:113200350-113200370 12 6.61e-04 AATAGCACAG TCCAACTG T chr7:102066469-102066489 12 7.26e-04 AGAAGAGAGG CGGAACTG C chr5:14156899-14156919 13 7.26e-04 GTCATCCAAA CAAAACAG chr5:131756818-131756838 1 7.57e-04 . TTTAACTG TGTTTTCCTT chr3:152040786-152040806 7 9.23e-04 CAGGTC AGCAACAG ACTTGC chr4:185505104-185505124 12 9.88e-04 CCTTTAGTTG CTCAACTG T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HRWAACTG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:78132195-78132215 1.7e-05 8_[+2]_4 chr12:4938830-4938850 1.7e-05 1_[+2]_11 chr15:60877052-60877072 1.7e-05 3_[+2]_9 chr6:51166950-51166970 3.2e-05 11_[+2]_1 chr12:85921143-85921163 3.2e-05 12_[+2] chr15:66446543-66446563 3.2e-05 12_[+2] chr14:89896037-89896057 0.00013 2_[+2]_10 chr10:52257618-52257638 0.00016 10_[+2]_2 chr4:175849531-175849551 0.00019 10_[+2]_2 chr5:50152775-50152795 0.00027 12_[+2] chr16:10874697-10874717 0.0004 [+2]_12 chr21:43706743-43706763 0.00048 4_[+2]_8 chr5:111452282-111452302 0.00048 11_[+2]_1 chr2:45957197-45957217 0.00061 [+2]_12 chr19:11316765-11316785 0.00061 3_[+2]_9 chr12:102455043-10245506 0.00061 10_[+2]_2 chr3:15839682-15839702 0.00061 1_[+2]_11 chr1:208035433-208035453 0.00061 10_[+2]_2 chr17:38719833-38719853 0.00066 4_[+2]_8 chr4:113200350-113200370 0.00066 11_[+2]_1 chr7:102066469-102066489 0.00073 11_[+2]_1 chr5:14156899-14156919 0.00073 12_[+2] chr5:131756818-131756838 0.00076 [+2]_12 chr3:152040786-152040806 0.00092 6_[+2]_6 chr4:185505104-185505124 0.00099 11_[+2]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HRWAACTG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF HRWAACTG width=8 seqs=25 chr16:78132195-78132215 ( 9) AATAACTG 1 chr12:4938830-4938850 ( 2) AATAACTG 1 chr15:60877052-60877072 ( 4) AATAACTG 1 chr6:51166950-51166970 ( 12) CATAACTG 1 chr12:85921143-85921163 ( 13) CATAACTG 1 chr15:66446543-66446563 ( 13) CATAACTG 1 chr14:89896037-89896057 ( 3) AACAACTG 1 chr10:52257618-52257638 ( 11) CCTAACTG 1 chr4:175849531-175849551 ( 11) TGTAACTG 1 chr5:50152775-50152795 ( 13) TAAAACTG 1 chr16:10874697-10874717 ( 1) CCAAACTG 1 chr21:43706743-43706763 ( 5) AGTAACAG 1 chr5:111452282-111452302 ( 12) TGAAACTG 1 chr2:45957197-45957217 ( 1) AAAAACAG 1 chr19:11316765-11316785 ( 4) AGGAACTG 1 chr12:102455043-10245506 ( 11) AGGAACTG 1 chr3:15839682-15839702 ( 2) ACTAACAG 1 chr1:208035433-208035453 ( 11) TCAAACTG 1 chr17:38719833-38719853 ( 5) AACAACAG 1 chr4:113200350-113200370 ( 12) TCCAACTG 1 chr7:102066469-102066489 ( 12) CGGAACTG 1 chr5:14156899-14156919 ( 13) CAAAACAG 1 chr5:131756818-131756838 ( 1) TTTAACTG 1 chr3:152040786-152040806 ( 7) AGCAACAG 1 chr4:185505104-185505124 ( 12) CTCAACTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HRWAACTG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.15019 E= 1.4e+002 75 43 -1129 -2 75 -25 12 -160 -12 -25 -110 86 194 -1129 -1129 -1129 194 -1129 -1129 -1129 -1129 207 -1129 -1129 -12 -1129 -1129 165 -1129 -1129 195 -1129 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HRWAACTG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 1.4e+002 0.440000 0.320000 0.000000 0.240000 0.440000 0.200000 0.280000 0.080000 0.240000 0.200000 0.120000 0.440000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.240000 0.000000 0.000000 0.760000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HRWAACTG MEME-2 regular expression -------------------------------------------------------------------------------- [ACT][AGC][TAC]AAC[TA]G -------------------------------------------------------------------------------- Time 2.91 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTCCTTC MEME-3 width = 8 sites = 4 llr = 43 E-value = 7.4e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTCCTTC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 3::aa::a probability G :::::::: matrix T 8aa::aa: bits 2.1 ******* 1.9 ******* 1.7 ******* 1.4 ******* Relative 1.2 ******** Entropy 1.0 ******** (15.6 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTCCTTC consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCTTC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr5:131756818-131756838 12 1.14e-05 TTAACTGTGT TTTCCTTC C chr6:31794957-31794977 1 1.14e-05 . TTTCCTTC TCCTTCCCAT chr6:21603823-21603843 5 1.14e-05 TTGT TTTCCTTC TCTATGTT chr7:101384424-101384444 11 2.26e-05 TTTTTTTTTT CTTCCTTC CC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCTTC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:131756818-131756838 1.1e-05 11_[+3]_1 chr6:31794957-31794977 1.1e-05 [+3]_12 chr6:21603823-21603843 1.1e-05 4_[+3]_8 chr7:101384424-101384444 2.3e-05 10_[+3]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCTTC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTCCTTC width=8 seqs=4 chr5:131756818-131756838 ( 12) TTTCCTTC 1 chr6:31794957-31794977 ( 1) TTTCCTTC 1 chr6:21603823-21603843 ( 5) TTTCCTTC 1 chr7:101384424-101384444 ( 11) CTTCCTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCTTC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.66445 E= 7.4e+002 -865 7 -865 162 -865 -865 -865 204 -865 -865 -865 204 -865 207 -865 -865 -865 207 -865 -865 -865 -865 -865 204 -865 -865 -865 204 -865 207 -865 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCTTC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 7.4e+002 0.000000 0.250000 0.000000 0.750000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCTTC MEME-3 regular expression -------------------------------------------------------------------------------- [TC]TTCCTTC -------------------------------------------------------------------------------- Time 3.72 secs. ******************************************************************************** ******************************************************************************** MOTIF AAACCACA MEME-4 width = 8 sites = 13 llr = 106 E-value = 1.8e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAACCACA MEME-4 Description -------------------------------------------------------------------------------- Simplified A a78:2a:8 pos.-specific C ::188:a2 probability G :212:::: matrix T :2:::::: bits 2.1 * 1.9 * ** 1.7 * ** 1.4 * * ** Relative 1.2 * ****** Entropy 1.0 * ****** (11.8 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAACCACA consensus A C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAACCACA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:45957197-45957217 9 1.63e-05 AAAAACAG AAACCACA CATT chr2:136894262-136894282 3 1.63e-05 TG AAACCACA GTGGGGTGTT chr13:51467862-51467882 7 1.63e-05 TTCAGG AAACCACA CTTACA chr15:66446543-66446563 1 4.91e-05 . AAACAACA ACATCATAAC chrX:118816469-118816489 11 6.43e-05 TAAATACGTT ATACCACA TT chr8:103899343-103899363 4 8.05e-05 CAC AGACCACA TGGCTTCTT chr13:38923840-38923860 2 9.82e-05 A AAAGCACA AGATATTTGT chr3:128564830-128564850 2 1.13e-04 A AACCCACA CTCAACCGCC chr1:180123651-180123671 13 1.46e-04 GTGAGAGGCC AAACAACC chr19:1648539-1648559 12 1.46e-04 GTTTAACAAA AAACAACC C chr4:27721748-27721768 7 1.46e-04 tctttt aagccaca tagttt chr20:36156419-36156439 2 1.74e-04 C AGACCACC TTTGAGGACT chr4:113200350-113200370 3 2.61e-04 AA ATAGCACA GTCCAACTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAACCACA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:45957197-45957217 1.6e-05 8_[+4]_4 chr2:136894262-136894282 1.6e-05 2_[+4]_10 chr13:51467862-51467882 1.6e-05 6_[+4]_6 chr15:66446543-66446563 4.9e-05 [+4]_12 chrX:118816469-118816489 6.4e-05 10_[+4]_2 chr8:103899343-103899363 8e-05 3_[+4]_9 chr13:38923840-38923860 9.8e-05 1_[+4]_11 chr3:128564830-128564850 0.00011 1_[+4]_11 chr1:180123651-180123671 0.00015 12_[+4] chr19:1648539-1648559 0.00015 11_[+4]_1 chr4:27721748-27721768 0.00015 6_[+4]_6 chr20:36156419-36156439 0.00017 1_[+4]_11 chr4:113200350-113200370 0.00026 2_[+4]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAACCACA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAACCACA width=8 seqs=13 chr2:45957197-45957217 ( 9) AAACCACA 1 chr2:136894262-136894282 ( 3) AAACCACA 1 chr13:51467862-51467882 ( 7) AAACCACA 1 chr15:66446543-66446563 ( 1) AAACAACA 1 chrX:118816469-118816489 ( 11) ATACCACA 1 chr8:103899343-103899363 ( 4) AGACCACA 1 chr13:38923840-38923860 ( 2) AAAGCACA 1 chr3:128564830-128564850 ( 2) AACCCACA 1 chr1:180123651-180123671 ( 13) AAACAACC 1 chr19:1648539-1648559 ( 12) AAACAACC 1 chr4:27721748-27721768 ( 7) AAGCCACA 1 chr20:36156419-36156439 ( 2) AGACCACC 1 chr4:113200350-113200370 ( 3) ATAGCACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAACCACA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.4923 E= 1.8e+003 194 -1035 -1035 -1035 141 -1035 -75 -66 170 -163 -174 -1035 -1035 183 -75 -1035 -18 169 -1035 -1035 194 -1035 -1035 -1035 -1035 207 -1035 -1035 156 -5 -1035 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAACCACA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 1.8e+003 1.000000 0.000000 0.000000 0.000000 0.692308 0.000000 0.153846 0.153846 0.846154 0.076923 0.076923 0.000000 0.000000 0.846154 0.153846 0.000000 0.230769 0.769231 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.769231 0.230769 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAACCACA MEME-4 regular expression -------------------------------------------------------------------------------- AAAC[CA]AC[AC] -------------------------------------------------------------------------------- Time 5.45 secs. ******************************************************************************** ******************************************************************************** MOTIF TGGCTGCN MEME-5 width = 8 sites = 7 llr = 66 E-value = 8.7e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGCTGCN MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::1 pos.-specific C :::a::a3 probability G :aa::9:3 matrix T a:::a1:3 bits 2.1 * ** * 1.9 ***** * 1.7 ***** * 1.4 ******* Relative 1.2 ******* Entropy 1.0 ******* (13.6 bits) 0.8 ******* 0.6 ******* 0.4 ******* 0.2 ******* 0.0 -------- Multilevel TGGCTGCC consensus G sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCTGCN MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr5:5422626-5422646 11 2.76e-05 CTACTCCTAT TGGCTGCT CC chr4:87882955-87882975 12 2.76e-05 AGATGTCAGG TGGCTGCC C chr17:74230532-74230552 8 2.76e-05 tccaaag tggctgcc ccatt chr6:6943310-6943330 9 4.24e-05 GGAGCGGC TGGCTGCG CTCT chr13:49822047-49822067 3 4.24e-05 TC TGGCTGCG CCTAGTGGGC chr9:6750870-6750890 8 5.74e-05 gctcttg tggctgca ttcag chr8:103899343-103899363 12 8.35e-05 ACAGACCACA TGGCTTCT T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCTGCN MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:5422626-5422646 2.8e-05 10_[+5]_2 chr4:87882955-87882975 2.8e-05 11_[+5]_1 chr17:74230532-74230552 2.8e-05 7_[+5]_5 chr6:6943310-6943330 4.2e-05 8_[+5]_4 chr13:49822047-49822067 4.2e-05 2_[+5]_10 chr9:6750870-6750890 5.7e-05 7_[+5]_5 chr8:103899343-103899363 8.3e-05 11_[+5]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCTGCN MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGCTGCN width=8 seqs=7 chr5:5422626-5422646 ( 11) TGGCTGCT 1 chr4:87882955-87882975 ( 12) TGGCTGCC 1 chr17:74230532-74230552 ( 8) TGGCTGCC 1 chr6:6943310-6943330 ( 9) TGGCTGCG 1 chr13:49822047-49822067 ( 3) TGGCTGCG 1 chr9:6750870-6750890 ( 8) TGGCTGCA 1 chr8:103899343-103899363 ( 12) TGGCTTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCTGCN MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.69928 E= 8.7e+002 -945 -945 -945 204 -945 -945 195 -945 -945 -945 195 -945 -945 207 -945 -945 -945 -945 -945 204 -945 -945 173 -76 -945 207 -945 -945 -87 26 15 23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCTGCN MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 8.7e+002 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.857143 0.142857 0.000000 1.000000 0.000000 0.000000 0.142857 0.285714 0.285714 0.285714 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCTGCN MEME-5 regular expression -------------------------------------------------------------------------------- TGGCTGC[CGT] -------------------------------------------------------------------------------- Time 6.45 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:2407212-2407232 3.54e-03 20 chr14:89290854-89290874 7.15e-01 20 chr13:51467862-51467882 3.99e-02 6_[+4(1.63e-05)]_6 chr14:89896037-89896057 2.78e-03 20 chr3:152040786-152040806 7.89e-02 20 chr1:156462545-156462565 6.19e-02 20 chr4:185505104-185505124 6.13e-02 20 chr18:11511583-11511603 9.80e-01 20 chr15:54875170-54875190 5.74e-01 20 chr4:27721748-27721768 9.22e-02 20 chr6:26361074-26361094 8.39e-01 20 chr5:111452282-111452302 1.38e-02 20 chr6:167412860-167412880 4.10e-01 20 chr1:150123777-150123797 4.33e-01 20 chr7:101384424-101384444 2.73e-02 10_[+3(2.26e-05)]_2 chr10:52257618-52257638 4.98e-02 20 chr19:1648539-1648559 5.94e-02 20 chr8:74206492-74206512 8.10e-01 20 chr10:75910688-75910708 7.21e-01 20 chr10:98478279-98478299 1.00e-02 20 chr9:123834288-123834308 7.32e-01 20 chr1:180123651-180123671 7.46e-02 20 chr9:139595902-139595922 7.76e-01 20 chrX:118816469-118816489 4.08e-02 10_[+4(6.43e-05)]_2 chr17:74230532-74230552 4.02e-03 7_[+5(2.76e-05)]_5 chr15:60877052-60877072 6.35e-03 3_[+2(1.68e-05)]_9 chr4:122698404-122698424 3.19e-02 20 chr2:47210512-47210532 9.16e-01 20 chr2:237966762-237966782 1.84e-01 20 chr21:43706743-43706763 4.05e-02 20 chr12:4938830-4938850 6.35e-03 1_[+2(1.68e-05)]_11 chr19:40192098-40192118 1.46e-01 20 chr20:48422012-48422032 7.96e-01 20 chr8:119501218-119501238 3.72e-01 20 chr1:208035433-208035453 4.36e-02 20 chr16:78132195-78132215 4.87e-03 8_[+2(1.68e-05)]_4 chr14:22929636-22929656 8.99e-01 20 chr4:40464550-40464570 4.61e-02 20 chr4:156895711-156895731 2.61e-01 20 chr2:136894262-136894282 4.56e-03 2_[+4(1.63e-05)]_10 chr8:81046984-81047004 5.20e-01 20 chr3:15839682-15839702 1.97e-02 20 chr8:103899343-103899363 2.33e-04 3_[+4(8.05e-05)]_[+5(8.35e-05)]_1 chr18:72707013-72707033 1.99e-04 12_[+1(3.25e-05)] chr12:110841652-11084167 7.79e-01 20 chr1:117110997-117111017 4.97e-01 20 chr8:58165311-58165331 7.68e-01 20 chrX:1600811-1600831 2.97e-01 20 chr7:128320203-128320223 4.43e-01 20 chrX:71401506-71401526 1.15e-01 20 chr6:5261087-5261107 9.77e-01 20 chr18:4392059-4392079 9.18e-01 20 chr18:24290647-24290667 8.58e-01 20 chr19:19144331-19144351 6.19e-02 20 chr6:16483980-16484000 8.53e-03 20 chr19:10353659-10353679 6.13e-02 20 chr6:24522838-24522858 6.86e-01 20 chr11:118272169-11827218 8.60e-01 20 chr5:14156899-14156919 3.76e-02 20 chr2:46070527-46070547 7.07e-01 20 chr7:105447315-105447335 3.11e-01 20 chr19:16477359-16477379 1.84e-02 5_[+1(6.21e-05)]_7 chr1:24236814-24236834 8.93e-01 20 chr5:145553323-145553343 2.81e-01 20 chr22:40808668-40808688 8.25e-01 20 chr16:75109276-75109296 5.17e-01 20 chr6:21603823-21603843 1.58e-02 4_[+3(1.14e-05)]_8 chrX:7028488-7028508 5.07e-01 20 chr14:77506887-77506907 2.65e-01 20 chr2:178499797-178499817 4.28e-01 20 chr22:50247136-50247156 5.87e-01 20 chr1:192547847-192547867 1.18e-01 20 chr15:66446543-66446563 6.35e-04 [+4(4.91e-05)]_4_[+2(3.22e-05)] chr8:144544416-144544436 7.54e-01 20 chr7:31014538-31014558 8.23e-01 20 chr7:117228475-117228495 9.31e-01 20 chr16:10915260-10915280 6.24e-01 20 chr1:244998667-244998687 9.42e-01 20 chr1:202129195-202129215 2.09e-02 20 chr6:28351191-28351211 1.61e-01 20 chr15:78342609-78342629 7.49e-01 20 chr22:35790113-35790133 9.24e-01 20 chr16:11296656-11296676 1.04e-01 20 chr12:103496212-10349623 8.61e-02 20 chr12:102455043-10245506 1.34e-02 20 chr3:52444608-52444628 5.31e-01 20 chr17:71228637-71228657 5.94e-01 20 chr4:113200350-113200370 3.27e-03 20 chr7:107384118-107384138 9.16e-01 20 chr17:72734500-72734520 4.37e-01 20 chr5:55274005-55274025 4.93e-01 20 chr14:58666706-58666726 9.34e-01 20 chr9:130890608-130890628 5.89e-01 20 chr5:50152775-50152795 1.72e-01 20 chr6:31794957-31794977 1.39e-02 [+3(1.14e-05)]_12 chr21:43956133-43956153 3.07e-01 20 chr2:96890953-96890973 3.78e-01 20 chr11:113545945-11354596 8.13e-01 20 chr13:29004238-29004258 1.76e-01 20 chr12:13745657-13745677 6.30e-01 20 chr4:186231142-186231162 5.96e-01 20 chr16:10874697-10874717 1.45e-02 20 chr17:7123144-7123164 3.51e-01 20 chr21:43948073-43948093 8.00e-01 20 chr16:10906611-10906631 3.78e-01 20 chr9:112919336-112919356 6.98e-01 20 chr11:68518955-68518975 1.65e-01 20 chr14:66190291-66190311 8.58e-02 1_[+1(6.21e-05)]_11 chr1:92942038-92942058 1.23e-01 20 chr19:16250767-16250787 9.73e-01 20 chr6:209997-210017 3.90e-01 20 chr10:74839717-74839737 7.77e-01 20 chr7:20323684-20323704 6.58e-01 20 chr6:31789711-31789731 6.39e-01 20 chr14:72085645-72085665 4.08e-01 20 chr17:33776802-33776822 9.29e-01 20 chr19:11681024-11681044 3.49e-02 3_[+1(9.42e-05)]_9 chr8:58163466-58163486 3.37e-02 20 chr11:3806585-3806605 3.81e-01 20 chr11:34073094-34073114 5.52e-01 20 chr21:43653287-43653307 5.40e-01 20 chr6:11386732-11386752 3.64e-01 20 chr18:60828431-60828451 7.17e-01 20 chr3:111832923-111832943 1.02e-01 20 chr19:41903602-41903622 8.74e-02 20 chr13:46951819-46951839 1.47e-01 20 chr22:31886007-31886027 9.91e-01 20 chr16:51611787-51611807 2.87e-01 20 chr12:40656603-40656623 2.69e-01 20 chr2:179886178-179886198 5.06e-02 20 chr13:38923840-38923860 9.84e-02 1_[+4(9.82e-05)]_11 chr4:2538170-2538190 2.48e-01 20 chr3:183229799-183229819 1.78e-01 20 chr6:15409162-15409182 2.94e-01 20 chr8:103937289-103937309 3.00e-01 20 chr6:31705886-31705906 5.81e-02 20 chr17:26385109-26385129 6.85e-01 20 chr2:26467635-26467655 7.21e-01 20 chr19:1095449-1095469 6.49e-01 20 chr12:57914747-57914767 8.29e-01 20 chr1:90158525-90158545 2.69e-02 4_[+1(9.42e-05)]_8 chr3:159745796-159745816 8.08e-01 20 chr6:144472515-144472535 1.18e-01 20 chr7:155075738-155075758 8.13e-01 20 chr10:12085040-12085060 5.98e-01 20 chr12:82349538-82349558 3.71e-01 20 chr10:63721249-63721269 9.94e-01 20 chr5:138724394-138724414 6.15e-03 20 chr3:42054519-42054539 3.43e-02 20 chr1:167597470-167597490 9.96e-01 20 chr8:123800152-123800172 9.10e-02 20 chrX:48397855-48397875 7.88e-01 20 chr12:64173758-64173778 4.18e-01 20 chr3:48342883-48342903 5.43e-01 20 chr4:87882955-87882975 2.43e-02 11_[+5(2.76e-05)]_1 chr6:144675280-144675300 8.40e-01 20 chr3:72898092-72898112 3.98e-01 20 chr18:60806072-60806092 9.77e-01 20 chr18:4320159-4320179 1.82e-01 20 chr6:365135-365155 8.22e-01 20 chr17:38719833-38719853 8.63e-03 20 chr17:68984271-68984291 9.34e-01 20 chr7:45018788-45018808 3.21e-01 20 chr19:16556285-16556305 3.27e-01 20 chr20:36156419-36156439 7.47e-02 20 chr1:9473803-9473823 5.52e-01 20 chr2:160751808-160751828 3.31e-01 20 chr7:8008781-8008801 5.56e-01 20 chr2:234132336-234132356 8.98e-01 20 chr2:95787643-95787663 9.49e-01 20 chr3:195908891-195908911 3.46e-01 20 chr1:151299981-151300001 5.27e-01 20 chr4:185275131-185275151 4.32e-01 20 chr9:6750870-6750890 1.38e-02 7_[+5(5.74e-05)]_5 chr18:9066924-9066944 4.02e-01 20 chr1:173384786-173384806 2.69e-01 20 chr14:100481887-10048190 5.67e-02 20 chr5:176935988-176936008 2.84e-02 20 chr6:40219463-40219483 4.72e-01 20 chr20:18447910-18447930 5.57e-01 20 chrX:77906494-77906514 2.80e-01 20 chr1:87379930-87379950 3.24e-01 20 chr12:85921143-85921163 5.48e-03 12_[+2(3.22e-05)] chr3:111260974-111260994 9.85e-01 20 chr12:85818462-85818482 2.72e-01 20 chr10:17686020-17686040 7.87e-01 20 chr20:43150684-43150704 8.89e-01 20 chr13:25875684-25875704 5.16e-02 20 chr12:22562708-22562728 1.53e-03 8_[+1(6.21e-05)]_4 chr2:42588484-42588504 9.45e-01 20 chr17:29862835-29862855 1.07e-01 20 chrX:48774717-48774737 3.77e-01 20 chr8:47829553-47829573 9.56e-01 20 chr6:43543892-43543912 6.22e-01 20 chr11:60157091-60157111 9.85e-01 20 chr13:49822047-49822067 3.65e-02 2_[+5(4.24e-05)]_10 chr1:62902554-62902574 9.57e-01 20 chr8:37595220-37595240 1.80e-01 20 chr5:5422626-5422646 9.48e-03 10_[+5(2.76e-05)]_2 chr16:29816890-29816910 6.06e-01 20 chr3:128564830-128564850 4.44e-02 20 chr7:8165975-8165995 4.67e-02 20 chr19:3185883-3185903 9.01e-01 20 chr4:175849531-175849551 2.53e-02 20 chr8:100845435-100845455 1.99e-01 20 chr7:102066469-102066489 2.78e-01 20 chr6:51166950-51166970 2.83e-02 11_[+2(3.22e-05)]_1 chr17:65362741-65362761 5.76e-01 20 chr2:225873278-225873298 2.09e-02 20 chr21:45632386-45632406 5.27e-01 20 chr11:60134671-60134691 7.70e-01 20 chr2:134256895-134256915 4.71e-01 20 chr6:6943310-6943330 1.35e-02 8_[+5(4.24e-05)]_4 chr15:96407809-96407829 8.23e-01 20 chr5:100225014-100225034 8.66e-01 20 chr21:19220682-19220702 6.94e-01 20 chr13:109815270-10981529 9.47e-01 20 chr1:117087623-117087643 2.35e-02 20 chr6:31510027-31510047 4.88e-01 20 chr8:95973024-95973044 3.60e-01 20 chr16:31433131-31433151 8.40e-01 20 chr1:63079083-63079103 9.77e-01 20 chr5:131756818-131756838 8.74e-05 11_[+3(1.14e-05)]_1 chr7:35769063-35769083 6.05e-01 20 chr17:7387233-7387253 7.73e-01 20 chr15:100044525-10004454 3.84e-01 20 chr2:68430963-68430983 5.72e-01 20 chr15:78337016-78337036 3.14e-02 9_[+1(6.21e-05)]_3 chr12:129314518-12931453 6.03e-01 20 chr4:77120190-77120210 3.59e-01 20 chr5:143186293-143186313 8.67e-01 20 chr7:150065210-150065230 6.56e-01 20 chr12:24064727-24064747 5.13e-01 20 chr19:6577619-6577639 6.97e-01 20 chr15:101507450-10150747 9.70e-01 20 chr10:90145772-90145792 2.45e-01 20 chr20:47226356-47226376 7.30e-01 20 chr5:180650104-180650124 4.50e-01 20 chr14:22961227-22961247 6.65e-02 20 chr19:11316765-11316785 2.64e-01 20 chr16:57076239-57076259 7.78e-01 20 chr14:98664996-98665016 7.43e-01 20 chr2:123464918-123464938 2.26e-01 20 chr2:133034632-133034652 8.83e-01 20 chr2:45957197-45957217 1.38e-03 8_[+4(1.63e-05)]_4 chr9:101984413-101984433 9.50e-01 20 chr11:67035921-67035941 3.33e-01 20 chr19:49497119-49497139 3.68e-01 20 chr19:44455308-44455328 5.28e-01 20 chr6:31620604-31620624 3.99e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n04.farnam.hpc.yale.internal ********************************************************************************