******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/MXI1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr11:59436593-59436613 1.0000 20 chr12:68569385-68569405 1.0000 20 chr6:31671219-31671239 1.0000 20 chr1:155164699-155164719 1.0000 20 chr3:167098111-167098131 1.0000 20 chr22:23484211-23484231 1.0000 20 chr1:46052245-46052265 1.0000 20 chr17:74731287-74731307 1.0000 20 chr20:8000472-8000492 1.0000 20 chr12:65220313-65220333 1.0000 20 chr1:158985404-158985424 1.0000 20 chr20:37101411-37101431 1.0000 20 chr22:47173689-47173709 1.0000 20 chr1:156251188-156251208 1.0000 20 chr14:106267699-10626771 1.0000 20 chr5:1295123-1295143 1.0000 20 chr9:112919317-112919337 1.0000 20 chr20:20433118-20433138 1.0000 20 chr19:14529162-14529182 1.0000 20 chr21:46961725-46961745 1.0000 20 chr6:69942937-69942957 1.0000 20 chr21:33765278-33765298 1.0000 20 chr1:229694841-229694861 1.0000 20 chr2:241499653-241499673 1.0000 20 chr11:119252539-11925255 1.0000 20 chr10:121065422-12106544 1.0000 20 chr4:57302581-57302601 1.0000 20 chr3:10502031-10502051 1.0000 20 chr17:7477253-7477273 1.0000 20 chr21:44847212-44847232 1.0000 20 chr9:3525876-3525896 1.0000 20 chr3:42814751-42814771 1.0000 20 chr12:76478516-76478536 1.0000 20 chr2:10261012-10261032 1.0000 20 chr17:36831373-36831393 1.0000 20 chr1:67894792-67894812 1.0000 20 chr10:3916087-3916107 1.0000 20 chr17:33307470-33307490 1.0000 20 chr3:183967368-183967388 1.0000 20 chr19:58874247-58874267 1.0000 20 chr20:62258531-62258551 1.0000 20 chr11:64684809-64684829 1.0000 20 chr13:24554456-24554476 1.0000 20 chr2:232469534-232469554 1.0000 20 chr2:232328501-232328521 1.0000 20 chr16:75590131-75590151 1.0000 20 chr9:135457598-135457618 1.0000 20 chr8:101733159-101733179 1.0000 20 chr16:58529209-58529229 1.0000 20 chr19:55690817-55690837 1.0000 20 chr7:100450213-100450233 1.0000 20 chr7:86781578-86781598 1.0000 20 chr19:4909978-4909998 1.0000 20 chr9:73033799-73033819 1.0000 20 chr22:39548867-39548887 1.0000 20 chr19:11616675-11616695 1.0000 20 chr5:175815590-175815610 1.0000 20 chr17:1953220-1953240 1.0000 20 chr6:86388772-86388792 1.0000 20 chr10:124767491-12476751 1.0000 20 chr2:27440321-27440341 1.0000 20 chr12:123848148-12384816 1.0000 20 chr5:173043035-173043055 1.0000 20 chr19:10426653-10426673 1.0000 20 chr22:21400054-21400074 1.0000 20 chr4:110736931-110736951 1.0000 20 chr6:33256972-33256992 1.0000 20 chr21:34100735-34100755 1.0000 20 chr17:57233105-57233125 1.0000 20 chr19:40336988-40337008 1.0000 20 chr12:13254245-13254265 1.0000 20 chr2:75062159-75062179 1.0000 20 chr3:195808424-195808444 1.0000 20 chr12:6677417-6677437 1.0000 20 chr19:19144718-19144738 1.0000 20 chr5:81046949-81046969 1.0000 20 chr17:74449372-74449392 1.0000 20 chr22:41697558-41697578 1.0000 20 chr17:38269630-38269650 1.0000 20 chr2:8562020-8562040 1.0000 20 chr18:77905772-77905792 1.0000 20 chr10:99161045-99161065 1.0000 20 chr17:43394873-43394893 1.0000 20 chr8:145149761-145149781 1.0000 20 chr16:16044369-16044389 1.0000 20 chr12:105380237-10538025 1.0000 20 chr17:7486990-7487010 1.0000 20 chr15:90728494-90728514 1.0000 20 chr12:132568613-13256863 1.0000 20 chr10:112256184-11225620 1.0000 20 chr14:103995568-10399558 1.0000 20 chr9:137299324-137299344 1.0000 20 chr2:198570112-198570132 1.0000 20 chr16:2510130-2510150 1.0000 20 chr3:27411009-27411029 1.0000 20 chr3:39222411-39222431 1.0000 20 chr15:68522457-68522477 1.0000 20 chr2:85766927-85766947 1.0000 20 chr19:13002133-13002153 1.0000 20 chr19:13842475-13842495 1.0000 20 chr19:15334390-15334410 1.0000 20 chr8:103425171-103425191 1.0000 20 chr10:60027942-60027962 1.0000 20 chr16:1662036-1662056 1.0000 20 chr3:12525965-12525985 1.0000 20 chr10:95256374-95256394 1.0000 20 chr6:160403092-160403112 1.0000 20 chr9:140523259-140523279 1.0000 20 chr11:61334844-61334864 1.0000 20 chr9:74977678-74977698 1.0000 20 chr12:50794889-50794909 1.0000 20 chr17:34890826-34890846 1.0000 20 chr14:64855042-64855062 1.0000 20 chr1:245026286-245026306 1.0000 20 chr4:99849364-99849384 1.0000 20 chr11:78285785-78285805 1.0000 20 chr11:66050051-66050071 1.0000 20 chr1:40349161-40349181 1.0000 20 chr5:72861614-72861634 1.0000 20 chr5:176739300-176739320 1.0000 20 chr19:17866910-17866930 1.0000 20 chr8:121821724-121821744 1.0000 20 chr1:12123374-12123394 1.0000 20 chr17:46102463-46102483 1.0000 20 chr17:55162631-55162651 1.0000 20 chr6:41675609-41675629 1.0000 20 chr15:41407877-41407897 1.0000 20 chr13:92001391-92001411 1.0000 20 chr3:99536387-99536407 1.0000 20 chr17:8113904-8113924 1.0000 20 chr5:177543656-177543676 1.0000 20 chr16:58283830-58283850 1.0000 20 chr1:1051739-1051759 1.0000 20 chr6:41889236-41889256 1.0000 20 chr11:102980132-10298015 1.0000 20 chr14:62229130-62229150 1.0000 20 chr6:167412515-167412535 1.0000 20 chr9:139981182-139981202 1.0000 20 chr1:229761938-229761958 1.0000 20 chr1:11120264-11120284 1.0000 20 chr6:151187454-151187474 1.0000 20 chr2:74648764-74648784 1.0000 20 chr17:1419883-1419903 1.0000 20 chr3:14165779-14165799 1.0000 20 chr17:19265950-19265970 1.0000 20 chr2:61763902-61763922 1.0000 20 chr19:1864293-1864313 1.0000 20 chr15:50647679-50647699 1.0000 20 chr20:39657139-39657159 1.0000 20 chr5:138609824-138609844 1.0000 20 chr12:101673931-10167395 1.0000 20 chr19:46296143-46296163 1.0000 20 chr17:46505150-46505170 1.0000 20 chr9:140024282-140024302 1.0000 20 chr2:112641731-112641751 1.0000 20 chr22:38194283-38194303 1.0000 20 chr11:66445330-66445350 1.0000 20 chr2:32853189-32853209 1.0000 20 chr3:57583678-57583698 1.0000 20 chr2:43822867-43822887 1.0000 20 chr12:125473635-12547365 1.0000 20 chr4:40196689-40196709 1.0000 20 chr21:46707870-46707890 1.0000 20 chr2:173421324-173421344 1.0000 20 chr5:1801463-1801483 1.0000 20 chr19:41903245-41903265 1.0000 20 chr12:64616033-64616053 1.0000 20 chr9:136001740-136001760 1.0000 20 chr20:43992133-43992153 1.0000 20 chr16:4321349-4321369 1.0000 20 chr7:105162698-105162718 1.0000 20 chr20:305143-305163 1.0000 20 chr22:19159191-19159211 1.0000 20 chr16:58549333-58549353 1.0000 20 chr19:36706058-36706078 1.0000 20 chr16:58161021-58161041 1.0000 20 chr11:93474082-93474102 1.0000 20 chr2:62081281-62081301 1.0000 20 chr6:5004160-5004180 1.0000 20 chr15:75495147-75495167 1.0000 20 chr8:29743429-29743449 1.0000 20 chr9:37079553-37079573 1.0000 20 chr2:73441390-73441410 1.0000 20 chr18:33709923-33709943 1.0000 20 chr19:10806616-10806636 1.0000 20 chr17:8152646-8152666 1.0000 20 chr10:111970972-11197099 1.0000 20 chr17:17208934-17208954 1.0000 20 chr7:154861848-154861868 1.0000 20 chr3:97690816-97690836 1.0000 20 chr9:4792973-4792993 1.0000 20 chr10:121356823-12135684 1.0000 20 chr21:45527279-45527299 1.0000 20 chr1:6086334-6086354 1.0000 20 chr16:46723569-46723589 1.0000 20 chr14:71786919-71786939 1.0000 20 chr14:24615779-24615799 1.0000 20 chr19:47291838-47291858 1.0000 20 chr12:96883308-96883328 1.0000 20 chr17:41116418-41116438 1.0000 20 chr16:67219428-67219448 1.0000 20 chr12:110151480-11015150 1.0000 20 chr16:11352643-11352663 1.0000 20 chr2:172289976-172289996 1.0000 20 chr1:167189529-167189549 1.0000 20 chr8:95907996-95908016 1.0000 20 chr17:81009587-81009607 1.0000 20 chr3:42109006-42109026 1.0000 20 chr20:42295747-42295767 1.0000 20 chr19:12776096-12776116 1.0000 20 chr16:10837651-10837671 1.0000 20 chr20:2632509-2632529 1.0000 20 chr15:74838853-74838873 1.0000 20 chr10:71993341-71993361 1.0000 20 chr1:43423992-43424012 1.0000 20 chr1:43637921-43637941 1.0000 20 chr1:156571231-156571251 1.0000 20 chr2:238583637-238583657 1.0000 20 chr2:183989622-183989642 1.0000 20 chr9:132388710-132388730 1.0000 20 chr19:39109673-39109693 1.0000 20 chr2:239229096-239229116 1.0000 20 chr1:44457213-44457233 1.0000 20 chr17:34958029-34958049 1.0000 20 chr16:89489449-89489469 1.0000 20 chr14:91527499-91527519 1.0000 20 chr4:120987933-120987953 1.0000 20 chr1:26735203-26735223 1.0000 20 chr3:52720061-52720081 1.0000 20 chr7:120035779-120035799 1.0000 20 chr19:2151855-2151875 1.0000 20 chr10:61666712-61666732 1.0000 20 chr17:4458638-4458658 1.0000 20 chr11:134094379-13409439 1.0000 20 chr4:87515272-87515292 1.0000 20 chr3:133524680-133524700 1.0000 20 chr12:120427721-12042774 1.0000 20 chr16:84650328-84650348 1.0000 20 chr2:11919430-11919450 1.0000 20 chr3:48699273-48699293 1.0000 20 chr10:75385756-75385776 1.0000 20 chr12:120907571-12090759 1.0000 20 chr22:44419873-44419893 1.0000 20 chr5:176264803-176264823 1.0000 20 chr1:118472377-118472397 1.0000 20 chr17:40688575-40688595 1.0000 20 chr12:56132323-56132343 1.0000 20 chr1:43148784-43148804 1.0000 20 chr13:31736121-31736141 1.0000 20 chr8:81397835-81397855 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_MXI1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/MXI1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.175 C 0.321 G 0.329 T 0.175 Background letter frequencies (from file dataset with add-one prior applied): A 0.175 C 0.321 G 0.329 T 0.175 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CCACGTGG MEME-1 width = 8 sites = 48 llr = 362 E-value = 2.1e-034 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCACGTGG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 2:9:1::1 pos.-specific C 6a:9:::1 probability G 1:::9:a7 matrix T ::11:a:1 bits 2.5 2.3 * 2.0 * * 1.8 * * Relative 1.5 ** ** Entropy 1.3 ****** (10.9 bits) 1.0 ****** 0.8 ****** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CCACGTGG consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACGTGG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr17:40688575-40688595 12 3.61e-05 TCTGTGGCTG CCACGTGG C chr22:44419873-44419893 9 3.61e-05 GGCTGCAC CCACGTGG CAAT chr17:34958029-34958049 2 3.61e-05 C CCACGTGG GAGCCTGGGA chr3:97690816-97690836 9 3.61e-05 GGCGCAGC CCACGTGG AAGC chr9:37079553-37079573 1 3.61e-05 . CCACGTGG CACTGGGAAG chr11:93474082-93474102 1 3.61e-05 . CCACGTGG GCAGAGAGCG chr12:64616033-64616053 7 3.61e-05 CTCGAC CCACGTGG CTCTCC chr4:40196689-40196709 10 3.61e-05 AGCATAGAA CCACGTGG CAT chr20:39657139-39657159 3 3.61e-05 CA CCACGTGG CTGCGCGGCC chr1:11120264-11120284 4 3.61e-05 GGG CCACGTGg ggcccggcc chr19:19144718-19144738 1 3.61e-05 . CCACGTGG CCGCGAAGAC chr10:124767491-12476751 5 3.61e-05 CAGG CCACGTGG TTAGTGTT chr20:20433118-20433138 10 3.61e-05 GACAGGCAG CCACGTGG GTA chr10:61666712-61666732 2 5.57e-05 G ACACGTGG AAAGGTCAGC chr20:2632509-2632529 12 5.57e-05 CGGAGGAGCA ACACGTGG C chr16:11352643-11352663 3 5.57e-05 GC ACACGTGG GTTCTCCTCA chr8:101733159-101733179 5 5.57e-05 TTCA ACACGTGG TATTTTTC chr1:245026286-245026306 7 7.49e-05 CGAAGC CCACGTGT ATCCCG chr2:85766927-85766947 3 7.49e-05 GA CCACGTGT TTGCCGCATG chr19:14529162-14529182 10 7.49e-05 CCAGACACG CCACGTGT ACC chr16:4321349-4321369 2 1.12e-04 A GCACGTGG CTCCAGCCCT chr17:55162631-55162651 13 1.12e-04 GCCTGGGCTA GCACGTGG chr14:64855042-64855062 13 1.12e-04 CAGTCCCTAA GCACGTGG chr17:34890826-34890846 6 1.12e-04 GGCGC GCACGTGG CTTGGCC chr15:68522457-68522477 5 1.12e-04 TGCA GCACGTGG GTTGCAGA chr7:100450213-100450233 4 1.12e-04 GGC GCACGTGG AGCTGGAGC chr17:46505150-46505170 10 1.67e-04 CCCCCACAG CCATGTGG CAG chr6:151187454-151187474 13 1.67e-04 ACGCCCGGCT CCACGTGC chr2:232328501-232328521 4 1.67e-04 CCA CCACGTGC CCGAAACAC chr5:1295123-1295143 9 1.67e-04 AGGGCTTC CCACGTGC GCAG chr17:4458638-4458658 8 1.96e-04 ACACGAA ACACGTGT GCTCC chr17:8152646-8152666 8 1.96e-04 GCATCTT CCACGTGA GTATA chr9:112919317-112919337 4 2.16e-04 AAA CCACATGG CTACTCTGC chr21:45527279-45527299 1 2.46e-04 . ACACGTGC GACGGCCGTG chr7:154861848-154861868 13 2.46e-04 GGACAGCACC ACATGTGG chr8:95907996-95908016 3 2.86e-04 CA CAACGTGG AGTGGCTGCA chr10:111970972-11197099 9 2.86e-04 AGCTAGAG ACACATGG TTTC chr1:118472377-118472397 13 3.22e-04 CGGCTGGGAG CCTCGTGG chr17:43394873-43394893 7 3.22e-04 GCTCTC CCTCGTGG GTCGCG chr17:7486990-7487010 3 3.63e-04 CA AAACGTGG TCCCTGACTG chr12:101673931-10167395 2 4.69e-04 C GCACGTGA GAAAGTCTGG chr15:50647679-50647699 9 4.88e-04 GCGGACGG CCATGTGC GCGG chr5:72861614-72861634 10 5.24e-04 CTTGAGGGT CCATGTGA TTT chr19:47291838-47291858 2 5.92e-04 G CCGCGTGG CTCTGAGCCC chr10:121356823-12135684 12 5.92e-04 CACTCTCCCT CCGCGTGG T chr5:175815590-175815610 2 6.77e-04 A CCTCGTGT AACAAACTCC chr22:38194283-38194303 8 8.22e-04 ctccaga acacatgc cctcc chr2:241499653-241499673 11 9.96e-04 CACCGGGTAG CCACGGGG CC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACGTGG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:40688575-40688595 3.6e-05 11_[+1]_1 chr22:44419873-44419893 3.6e-05 8_[+1]_4 chr17:34958029-34958049 3.6e-05 1_[+1]_11 chr3:97690816-97690836 3.6e-05 8_[+1]_4 chr9:37079553-37079573 3.6e-05 [+1]_12 chr11:93474082-93474102 3.6e-05 [+1]_12 chr12:64616033-64616053 3.6e-05 6_[+1]_6 chr4:40196689-40196709 3.6e-05 9_[+1]_3 chr20:39657139-39657159 3.6e-05 2_[+1]_10 chr1:11120264-11120284 3.6e-05 3_[+1]_9 chr19:19144718-19144738 3.6e-05 [+1]_12 chr10:124767491-12476751 3.6e-05 4_[+1]_8 chr20:20433118-20433138 3.6e-05 9_[+1]_3 chr10:61666712-61666732 5.6e-05 1_[+1]_11 chr20:2632509-2632529 5.6e-05 11_[+1]_1 chr16:11352643-11352663 5.6e-05 2_[+1]_10 chr8:101733159-101733179 5.6e-05 4_[+1]_8 chr1:245026286-245026306 7.5e-05 6_[+1]_6 chr2:85766927-85766947 7.5e-05 2_[+1]_10 chr19:14529162-14529182 7.5e-05 9_[+1]_3 chr16:4321349-4321369 0.00011 1_[+1]_11 chr17:55162631-55162651 0.00011 12_[+1] chr14:64855042-64855062 0.00011 12_[+1] chr17:34890826-34890846 0.00011 5_[+1]_7 chr15:68522457-68522477 0.00011 4_[+1]_8 chr7:100450213-100450233 0.00011 3_[+1]_9 chr17:46505150-46505170 0.00017 9_[+1]_3 chr6:151187454-151187474 0.00017 12_[+1] chr2:232328501-232328521 0.00017 3_[+1]_9 chr5:1295123-1295143 0.00017 8_[+1]_4 chr17:4458638-4458658 0.0002 7_[+1]_5 chr17:8152646-8152666 0.0002 7_[+1]_5 chr9:112919317-112919337 0.00022 3_[+1]_9 chr21:45527279-45527299 0.00025 [+1]_12 chr7:154861848-154861868 0.00025 12_[+1] chr8:95907996-95908016 0.00029 2_[+1]_10 chr10:111970972-11197099 0.00029 8_[+1]_4 chr1:118472377-118472397 0.00032 12_[+1] chr17:43394873-43394893 0.00032 6_[+1]_6 chr17:7486990-7487010 0.00036 2_[+1]_10 chr12:101673931-10167395 0.00047 1_[+1]_11 chr15:50647679-50647699 0.00049 8_[+1]_4 chr5:72861614-72861634 0.00052 9_[+1]_3 chr19:47291838-47291858 0.00059 1_[+1]_11 chr10:121356823-12135684 0.00059 11_[+1]_1 chr5:175815590-175815610 0.00068 1_[+1]_11 chr22:38194283-38194303 0.00082 7_[+1]_5 chr2:241499653-241499673 0.001 10_[+1]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACGTGG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCACGTGG width=8 seqs=48 chr17:40688575-40688595 ( 12) CCACGTGG 1 chr22:44419873-44419893 ( 9) CCACGTGG 1 chr17:34958029-34958049 ( 2) CCACGTGG 1 chr3:97690816-97690836 ( 9) CCACGTGG 1 chr9:37079553-37079573 ( 1) CCACGTGG 1 chr11:93474082-93474102 ( 1) CCACGTGG 1 chr12:64616033-64616053 ( 7) CCACGTGG 1 chr4:40196689-40196709 ( 10) CCACGTGG 1 chr20:39657139-39657159 ( 3) CCACGTGG 1 chr1:11120264-11120284 ( 4) CCACGTGG 1 chr19:19144718-19144738 ( 1) CCACGTGG 1 chr10:124767491-12476751 ( 5) CCACGTGG 1 chr20:20433118-20433138 ( 10) CCACGTGG 1 chr10:61666712-61666732 ( 2) ACACGTGG 1 chr20:2632509-2632529 ( 12) ACACGTGG 1 chr16:11352643-11352663 ( 3) ACACGTGG 1 chr8:101733159-101733179 ( 5) ACACGTGG 1 chr1:245026286-245026306 ( 7) CCACGTGT 1 chr2:85766927-85766947 ( 3) CCACGTGT 1 chr19:14529162-14529182 ( 10) CCACGTGT 1 chr16:4321349-4321369 ( 2) GCACGTGG 1 chr17:55162631-55162651 ( 13) GCACGTGG 1 chr14:64855042-64855062 ( 13) GCACGTGG 1 chr17:34890826-34890846 ( 6) GCACGTGG 1 chr15:68522457-68522477 ( 5) GCACGTGG 1 chr7:100450213-100450233 ( 4) GCACGTGG 1 chr17:46505150-46505170 ( 10) CCATGTGG 1 chr6:151187454-151187474 ( 13) CCACGTGC 1 chr2:232328501-232328521 ( 4) CCACGTGC 1 chr5:1295123-1295143 ( 9) CCACGTGC 1 chr17:4458638-4458658 ( 8) ACACGTGT 1 chr17:8152646-8152666 ( 8) CCACGTGA 1 chr9:112919317-112919337 ( 4) CCACATGG 1 chr21:45527279-45527299 ( 1) ACACGTGC 1 chr7:154861848-154861868 ( 13) ACATGTGG 1 chr8:95907996-95908016 ( 3) CAACGTGG 1 chr10:111970972-11197099 ( 9) ACACATGG 1 chr1:118472377-118472397 ( 13) CCTCGTGG 1 chr17:43394873-43394893 ( 7) CCTCGTGG 1 chr17:7486990-7487010 ( 3) AAACGTGG 1 chr12:101673931-10167395 ( 2) GCACGTGA 1 chr15:50647679-50647699 ( 9) CCATGTGC 1 chr5:72861614-72861634 ( 10) CCATGTGA 1 chr19:47291838-47291858 ( 2) CCGCGTGG 1 chr10:121356823-12135684 ( 12) CCGCGTGG 1 chr5:175815590-175815610 ( 2) CCTCGTGT 1 chr22:38194283-38194303 ( 8) ACACATGC 1 chr2:241499653-241499673 ( 11) CCACGGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACGTGG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 6.51301 E= 2.1e-034 25 101 -117 -1223 -207 158 -1223 -1223 235 -1223 -298 -148 -1223 151 -1223 -107 -149 -1223 151 -1223 -1223 -1223 -398 249 -1223 -1223 160 -1223 -149 -136 111 -75 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACGTGG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 48 E= 2.1e-034 0.208333 0.645833 0.145833 0.000000 0.041667 0.958333 0.000000 0.000000 0.895833 0.000000 0.041667 0.062500 0.000000 0.916667 0.000000 0.083333 0.062500 0.000000 0.937500 0.000000 0.000000 0.000000 0.020833 0.979167 0.000000 0.000000 1.000000 0.000000 0.062500 0.125000 0.708333 0.104167 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACGTGG MEME-1 regular expression -------------------------------------------------------------------------------- [CA]CACGTGG -------------------------------------------------------------------------------- Time 2.09 secs. ******************************************************************************** ******************************************************************************** MOTIF TMTTTYTB MEME-2 width = 8 sites = 9 llr = 89 E-value = 1.7e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif TMTTTYTB MEME-2 Description -------------------------------------------------------------------------------- Simplified A :3:::1:: pos.-specific C 17:::3:3 probability G :::::::3 matrix T 9:aaa6a3 bits 2.5 *** * 2.3 *** * 2.0 * *** * 1.8 * *** * Relative 1.5 * *** * Entropy 1.3 * *** * (14.2 bits) 1.0 ***** * 0.8 ******* 0.5 ******* 0.3 ******** 0.0 -------- Multilevel TCTTTTTC consensus A C G sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TMTTTYTB MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:8562020-8562040 4 2.49e-06 act tatttttt agcttaGTG chr8:121821724-121821744 8 8.49e-06 TTCTTCC TCTTTTTG GGTGA chr8:101733159-101733179 13 1.18e-05 CAACACGTGG TATTTTTC chr12:68569385-68569405 10 1.18e-05 TTGAAGAAG TATTTTTC TGG chr16:84650328-84650348 7 1.47e-05 ACGTGG TCTTTCTT TTCATG chr17:17208934-17208954 9 2.98e-05 GGTGGCTG TCTTTCTG TAGT chr1:229694841-229694861 4 2.98e-05 AGC TCTTTCTC ACGCCGGCA chr17:57233105-57233125 1 4.18e-05 . TCTTTATG GCGTGGGAGA chr1:12123374-12123394 13 4.80e-05 GTGTTTGCCC CCTTTTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TMTTTYTB MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:8562020-8562040 2.5e-06 3_[+2]_9 chr8:121821724-121821744 8.5e-06 7_[+2]_5 chr8:101733159-101733179 1.2e-05 12_[+2] chr12:68569385-68569405 1.2e-05 9_[+2]_3 chr16:84650328-84650348 1.5e-05 6_[+2]_6 chr17:17208934-17208954 3e-05 8_[+2]_4 chr1:229694841-229694861 3e-05 3_[+2]_9 chr17:57233105-57233125 4.2e-05 [+2]_12 chr1:12123374-12123394 4.8e-05 12_[+2] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TMTTTYTB MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TMTTTYTB width=8 seqs=9 chr2:8562020-8562040 ( 4) TATTTTTT 1 chr8:121821724-121821744 ( 8) TCTTTTTG 1 chr8:101733159-101733179 ( 13) TATTTTTC 1 chr12:68569385-68569405 ( 10) TATTTTTC 1 chr16:84650328-84650348 ( 7) TCTTTCTT 1 chr17:17208934-17208954 ( 9) TCTTTCTG 1 chr1:229694841-229694861 ( 4) TCTTTCTC 1 chr17:57233105-57233125 ( 1) TCTTTATG 1 chr1:12123374-12123394 ( 13) CCTTTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TMTTTYTB MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.89918 E= 1.7e+000 -982 -153 -982 235 93 105 -982 -982 -982 -982 -982 252 -982 -982 -982 252 -982 -982 -982 252 -66 6 -982 167 -982 -982 -982 252 -982 6 2 93 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TMTTTYTB MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 1.7e+000 0.000000 0.111111 0.000000 0.888889 0.333333 0.666667 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.111111 0.333333 0.000000 0.555556 0.000000 0.000000 0.000000 1.000000 0.000000 0.333333 0.333333 0.333333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TMTTTYTB MEME-2 regular expression -------------------------------------------------------------------------------- T[CA]TTT[TC]T[CGT] -------------------------------------------------------------------------------- Time 3.80 secs. ******************************************************************************** ******************************************************************************** MOTIF AAMAAACT MEME-3 width = 8 sites = 5 llr = 51 E-value = 1.8e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAMAAACT MEME-3 Description -------------------------------------------------------------------------------- Simplified A 6868aa:: pos.-specific C :24:::a: probability G 2::::::: matrix T 2::2:::a bits 2.5 ** * 2.3 ** * 2.0 ** * 1.8 ***** Relative 1.5 * ***** Entropy 1.3 ******* (14.7 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel AAAAAACT consensus GCCT sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAMAAACT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:67894792-67894812 10 1.61e-06 GGTGGAAAA AAAAAACT GCG chr5:175815590-175815610 10 4.57e-06 ACCTCGTGT AACAAACT CCT chr10:121065422-12106544 11 7.80e-06 ctgaggcaga aaataact CC chr12:123848148-12384816 7 1.68e-05 GTTCAG TACAAACT TCCGGG chr6:33256972-33256992 3 4.98e-05 GT GCAAAACT CCTCTCAGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAMAAACT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:67894792-67894812 1.6e-06 9_[+3]_3 chr5:175815590-175815610 4.6e-06 9_[+3]_3 chr10:121065422-12106544 7.8e-06 10_[+3]_2 chr12:123848148-12384816 1.7e-05 6_[+3]_6 chr6:33256972-33256992 5e-05 2_[+3]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAMAAACT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAMAAACT width=8 seqs=5 chr1:67894792-67894812 ( 10) AAAAAACT 1 chr5:175815590-175815610 ( 10) AACAAACT 1 chr10:121065422-12106544 ( 11) AAATAACT 1 chr12:123848148-12384816 ( 7) TACAAACT 1 chr6:33256972-33256992 ( 3) GCAAAACT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAMAAACT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.59397 E= 1.8e+003 177 -897 -72 20 219 -68 -897 -897 177 32 -897 -897 219 -897 -897 20 251 -897 -897 -897 251 -897 -897 -897 -897 164 -897 -897 -897 -897 -897 251 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAMAAACT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.8e+003 0.600000 0.000000 0.200000 0.200000 0.800000 0.200000 0.000000 0.000000 0.600000 0.400000 0.000000 0.000000 0.800000 0.000000 0.000000 0.200000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAMAAACT MEME-3 regular expression -------------------------------------------------------------------------------- [AGT][AC][AC][AT]AACT -------------------------------------------------------------------------------- Time 6.76 secs. ******************************************************************************** ******************************************************************************** MOTIF ACGTGTTT MEME-4 width = 8 sites = 2 llr = 24 E-value = 3.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACGTGTTT MEME-4 Description -------------------------------------------------------------------------------- Simplified A a::::::: pos.-specific C :a:::::: probability G ::a:a::: matrix T :::a:aaa bits 2.5 * * *** 2.3 * * *** 2.0 * * *** 1.8 ** * *** Relative 1.5 ******** Entropy 1.3 ******** (17.4 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel ACGTGTTT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACGTGTTT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr18:33709923-33709943 2 5.70e-06 C ACGTGTTT TGCTGCCCAA chr1:12123374-12123394 1 5.70e-06 . ACGTGTTT GCCCCCTTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACGTGTTT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr18:33709923-33709943 5.7e-06 1_[+4]_11 chr1:12123374-12123394 5.7e-06 [+4]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACGTGTTT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACGTGTTT width=8 seqs=2 chr18:33709923-33709943 ( 2) ACGTGTTT 1 chr1:12123374-12123394 ( 1) ACGTGTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACGTGTTT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.6653 E= 3.5e+003 250 -765 -765 -765 -765 164 -765 -765 -765 -765 160 -765 -765 -765 -765 251 -765 -765 160 -765 -765 -765 -765 251 -765 -765 -765 251 -765 -765 -765 251 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACGTGTTT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.5e+003 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACGTGTTT MEME-4 regular expression -------------------------------------------------------------------------------- ACGTGTTT -------------------------------------------------------------------------------- Time 9.92 secs. ******************************************************************************** ******************************************************************************** MOTIF AAATASAA MEME-5 width = 8 sites = 2 llr = 25 E-value = 3.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAATASAA MEME-5 Description -------------------------------------------------------------------------------- Simplified A aaa:a:aa pos.-specific C :::::5:: probability G :::::5:: matrix T :::a:::: bits 2.5 ***** ** 2.3 ***** ** 2.0 ***** ** 1.8 ***** ** Relative 1.5 ***** ** Entropy 1.3 ***** ** (18.2 bits) 1.0 ***** ** 0.8 ***** ** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel AAATACAA consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATASAA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:132568613-13256863 11 1.61e-06 GAGGGCGGGC AAATACAA CT chr3:42109006-42109026 6 3.27e-06 TATGG AAATAGAA ATGAAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATASAA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:132568613-13256863 1.6e-06 10_[+5]_2 chr3:42109006-42109026 3.3e-06 5_[+5]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATASAA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAATASAA width=8 seqs=2 chr12:132568613-13256863 ( 11) AAATACAA 1 chr3:42109006-42109026 ( 6) AAATAGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATASAA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.6653 E= 3.6e+003 250 -765 -765 -765 250 -765 -765 -765 250 -765 -765 -765 -765 -765 -765 251 250 -765 -765 -765 -765 64 60 -765 250 -765 -765 -765 250 -765 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATASAA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.6e+003 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATASAA MEME-5 regular expression -------------------------------------------------------------------------------- AAATA[CG]AA -------------------------------------------------------------------------------- Time 13.01 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:59436593-59436613 8.92e-01 20 chr12:68569385-68569405 2.25e-05 9_[+2(1.18e-05)]_3 chr6:31671219-31671239 6.86e-01 20 chr1:155164699-155164719 9.70e-01 20 chr3:167098111-167098131 6.55e-01 20 chr22:23484211-23484231 9.59e-01 20 chr1:46052245-46052265 5.73e-01 20 chr17:74731287-74731307 5.29e-01 20 chr20:8000472-8000492 7.13e-01 20 chr12:65220313-65220333 9.14e-02 20 chr1:158985404-158985424 1.45e-01 20 chr20:37101411-37101431 7.00e-01 20 chr22:47173689-47173709 1.44e-01 20 chr1:156251188-156251208 3.95e-01 20 chr14:106267699-10626771 2.88e-02 20 chr5:1295123-1295143 8.22e-02 20 chr9:112919317-112919337 4.64e-03 20 chr20:20433118-20433138 5.52e-03 9_[+1(3.61e-05)]_3 chr19:14529162-14529182 7.81e-03 9_[+1(7.49e-05)]_3 chr21:46961725-46961745 9.98e-01 20 chr6:69942937-69942957 9.95e-01 20 chr21:33765278-33765298 6.25e-01 20 chr1:229694841-229694861 6.09e-03 3_[+2(2.98e-05)]_9 chr2:241499653-241499673 4.28e-01 20 chr11:119252539-11925255 2.34e-02 20 chr10:121065422-12106544 2.65e-03 10_[+3(7.80e-06)]_2 chr4:57302581-57302601 7.67e-01 20 chr3:10502031-10502051 9.87e-01 20 chr17:7477253-7477273 9.99e-01 20 chr21:44847212-44847232 9.90e-01 20 chr9:3525876-3525896 2.96e-01 20 chr3:42814751-42814771 2.69e-01 20 chr12:76478516-76478536 6.26e-01 20 chr2:10261012-10261032 4.59e-01 20 chr17:36831373-36831393 9.35e-01 20 chr1:67894792-67894812 1.71e-04 9_[+3(1.61e-06)]_3 chr10:3916087-3916107 3.22e-01 20 chr17:33307470-33307490 9.90e-01 20 chr3:183967368-183967388 6.84e-02 20 chr19:58874247-58874267 9.92e-01 20 chr20:62258531-62258551 1.07e-01 20 chr11:64684809-64684829 9.87e-01 20 chr13:24554456-24554476 2.04e-01 20 chr2:232469534-232469554 9.84e-01 20 chr2:232328501-232328521 4.13e-02 20 chr16:75590131-75590151 2.12e-01 20 chr9:135457598-135457618 8.77e-01 20 chr8:101733159-101733179 2.75e-06 4_[+1(5.57e-05)]_[+2(1.18e-05)] chr16:58529209-58529229 1.78e-01 20 chr19:55690817-55690837 1.11e-01 20 chr7:100450213-100450233 6.59e-02 20 chr7:86781578-86781598 4.99e-01 20 chr19:4909978-4909998 9.47e-01 20 chr9:73033799-73033819 7.79e-01 20 chr22:39548867-39548887 1.00e+00 20 chr19:11616675-11616695 1.77e-02 20 chr5:175815590-175815610 9.80e-05 9_[+3(4.57e-06)]_3 chr17:1953220-1953240 4.51e-01 20 chr6:86388772-86388792 4.03e-01 20 chr10:124767491-12476751 1.08e-03 4_[+1(3.61e-05)]_8 chr2:27440321-27440341 8.11e-01 20 chr12:123848148-12384816 1.15e-03 6_[+3(1.68e-05)]_6 chr5:173043035-173043055 3.54e-01 20 chr19:10426653-10426673 9.69e-01 20 chr22:21400054-21400074 2.94e-01 20 chr4:110736931-110736951 9.81e-01 20 chr6:33256972-33256992 1.96e-02 2_[+3(4.98e-05)]_10 chr21:34100735-34100755 4.21e-01 20 chr17:57233105-57233125 3.70e-02 [+2(4.18e-05)]_12 chr19:40336988-40337008 6.15e-01 20 chr12:13254245-13254265 6.00e-01 20 chr2:75062159-75062179 8.54e-01 20 chr3:195808424-195808444 9.91e-01 20 chr12:6677417-6677437 4.20e-01 20 chr19:19144718-19144738 1.71e-02 [+1(3.61e-05)]_12 chr5:81046949-81046969 8.02e-01 20 chr17:74449372-74449392 9.99e-01 20 chr22:41697558-41697578 9.73e-01 20 chr17:38269630-38269650 9.60e-01 20 chr2:8562020-8562040 8.81e-05 3_[+2(2.49e-06)]_9 chr18:77905772-77905792 6.89e-01 20 chr10:99161045-99161065 7.08e-01 20 chr17:43394873-43394893 5.05e-02 20 chr8:145149761-145149781 8.69e-01 20 chr16:16044369-16044389 1.32e-01 20 chr12:105380237-10538025 9.56e-01 20 chr17:7486990-7487010 4.65e-03 20 chr15:90728494-90728514 9.19e-01 20 chr12:132568613-13256863 1.10e-03 10_[+5(1.61e-06)]_2 chr10:112256184-11225620 1.24e-01 20 chr14:103995568-10399558 1.00e+00 20 chr9:137299324-137299344 9.34e-01 20 chr2:198570112-198570132 9.17e-01 20 chr16:2510130-2510150 3.28e-01 20 chr3:27411009-27411029 8.86e-01 20 chr3:39222411-39222431 1.16e-01 20 chr15:68522457-68522477 1.90e-02 20 chr2:85766927-85766947 3.61e-05 4_[+4(5.70e-06)]_8 chr19:13002133-13002153 8.92e-01 20 chr19:13842475-13842495 9.96e-01 20 chr19:15334390-15334410 9.39e-01 20 chr8:103425171-103425191 6.50e-01 20 chr10:60027942-60027962 1.21e-01 20 chr16:1662036-1662056 2.35e-01 20 chr3:12525965-12525985 9.60e-01 20 chr10:95256374-95256394 8.46e-01 20 chr6:160403092-160403112 9.80e-01 20 chr9:140523259-140523279 9.02e-01 20 chr11:61334844-61334864 4.62e-01 20 chr9:74977678-74977698 1.11e-01 20 chr12:50794889-50794909 7.36e-01 20 chr17:34890826-34890846 1.62e-02 20 chr14:64855042-64855062 6.20e-02 20 chr1:245026286-245026306 5.37e-04 6_[+1(7.49e-05)]_6 chr4:99849364-99849384 1.75e-01 20 chr11:78285785-78285805 9.78e-01 20 chr11:66050051-66050071 6.32e-01 20 chr1:40349161-40349181 4.27e-01 20 chr5:72861614-72861634 1.62e-02 20 chr5:176739300-176739320 9.97e-01 20 chr19:17866910-17866930 7.15e-01 20 chr8:121821724-121821744 4.41e-03 7_[+2(8.49e-06)]_5 chr1:12123374-12123394 9.30e-05 [+4(5.70e-06)]_4_[+2(4.80e-05)] chr17:46102463-46102483 3.74e-01 20 chr17:55162631-55162651 1.39e-01 20 chr6:41675609-41675629 5.33e-01 20 chr15:41407877-41407897 6.40e-02 20 chr13:92001391-92001411 6.06e-01 20 chr3:99536387-99536407 6.94e-01 20 chr17:8113904-8113924 1.00e+00 20 chr5:177543656-177543676 1.77e-01 20 chr16:58283830-58283850 8.96e-01 20 chr1:1051739-1051759 9.07e-01 20 chr6:41889236-41889256 3.43e-01 20 chr11:102980132-10298015 7.71e-01 20 chr14:62229130-62229150 8.17e-01 20 chr6:167412515-167412535 2.88e-01 20 chr9:139981182-139981202 9.75e-01 20 chr1:229761938-229761958 9.98e-01 20 chr1:11120264-11120284 4.51e-02 3_[+1(3.61e-05)]_9 chr6:151187454-151187474 1.95e-01 20 chr2:74648764-74648784 3.74e-01 20 chr17:1419883-1419903 2.06e-01 20 chr3:14165779-14165799 9.42e-01 20 chr17:19265950-19265970 1.05e-01 20 chr2:61763902-61763922 5.40e-01 20 chr19:1864293-1864313 9.96e-01 20 chr15:50647679-50647699 2.84e-01 20 chr20:39657139-39657159 7.51e-03 2_[+1(3.61e-05)]_10 chr5:138609824-138609844 8.09e-01 20 chr12:101673931-10167395 1.44e-02 20 chr19:46296143-46296163 9.99e-01 20 chr17:46505150-46505170 1.06e-01 20 chr9:140024282-140024302 9.57e-01 20 chr2:112641731-112641751 3.04e-01 20 chr22:38194283-38194303 6.00e-02 20 chr11:66445330-66445350 9.70e-01 20 chr2:32853189-32853209 2.30e-01 20 chr3:57583678-57583698 9.65e-01 20 chr2:43822867-43822887 5.17e-01 20 chr12:125473635-12547365 6.07e-01 20 chr4:40196689-40196709 1.17e-03 9_[+1(3.61e-05)]_3 chr21:46707870-46707890 8.55e-01 20 chr2:173421324-173421344 9.96e-01 20 chr5:1801463-1801483 6.94e-01 20 chr19:41903245-41903265 5.14e-01 20 chr12:64616033-64616053 4.78e-03 6_[+1(3.61e-05)]_6 chr9:136001740-136001760 9.23e-01 20 chr20:43992133-43992153 9.89e-01 20 chr16:4321349-4321369 1.63e-02 20 chr7:105162698-105162718 8.85e-01 20 chr20:305143-305163 9.91e-01 20 chr22:19159191-19159211 6.49e-01 20 chr16:58549333-58549353 4.04e-02 20 chr19:36706058-36706078 8.29e-01 20 chr16:58161021-58161041 3.87e-01 20 chr11:93474082-93474102 3.11e-02 [+1(3.61e-05)]_12 chr2:62081281-62081301 6.07e-01 20 chr6:5004160-5004180 3.08e-01 20 chr15:75495147-75495167 3.41e-01 20 chr8:29743429-29743449 3.13e-02 20 chr9:37079553-37079573 3.26e-02 [+1(3.61e-05)]_12 chr2:73441390-73441410 7.19e-01 20 chr18:33709923-33709943 2.26e-03 1_[+4(5.70e-06)]_11 chr19:10806616-10806636 5.88e-01 20 chr17:8152646-8152666 3.95e-03 20 chr10:111970972-11197099 8.74e-04 20 chr17:17208934-17208954 1.20e-02 8_[+2(2.98e-05)]_4 chr7:154861848-154861868 3.90e-02 20 chr3:97690816-97690836 1.17e-02 8_[+1(3.61e-05)]_4 chr9:4792973-4792993 1.00e+00 20 chr10:121356823-12135684 1.44e-01 20 chr21:45527279-45527299 9.49e-02 20 chr1:6086334-6086354 9.12e-01 20 chr16:46723569-46723589 9.54e-01 20 chr14:71786919-71786939 2.07e-01 20 chr14:24615779-24615799 5.66e-01 20 chr19:47291838-47291858 1.33e-01 20 chr12:96883308-96883328 9.96e-01 20 chr17:41116418-41116438 1.28e-02 7_[+3(8.49e-05)]_5 chr16:67219428-67219448 5.27e-01 20 chr12:110151480-11015150 5.41e-01 20 chr16:11352643-11352663 7.13e-03 2_[+1(5.57e-05)]_10 chr2:172289976-172289996 5.02e-01 20 chr1:167189529-167189549 2.21e-02 20 chr8:95907996-95908016 5.61e-02 20 chr17:81009587-81009607 9.85e-01 20 chr3:42109006-42109026 6.30e-03 5_[+5(3.27e-06)]_7 chr20:42295747-42295767 8.52e-01 20 chr19:12776096-12776116 6.14e-01 20 chr16:10837651-10837671 7.37e-01 20 chr20:2632509-2632529 2.47e-02 11_[+1(5.57e-05)]_1 chr15:74838853-74838873 1.92e-01 20 chr10:71993341-71993361 1.00e+00 20 chr1:43423992-43424012 9.87e-01 20 chr1:43637921-43637941 7.97e-01 20 chr1:156571231-156571251 1.71e-02 20 chr2:238583637-238583657 4.10e-01 20 chr2:183989622-183989642 1.00e+00 20 chr9:132388710-132388730 3.36e-01 20 chr19:39109673-39109693 9.13e-01 20 chr2:239229096-239229116 8.53e-01 20 chr1:44457213-44457233 1.00e+00 20 chr17:34958029-34958049 3.39e-02 1_[+1(3.61e-05)]_11 chr16:89489449-89489469 9.82e-01 20 chr14:91527499-91527519 7.66e-01 20 chr4:120987933-120987953 6.22e-01 20 chr1:26735203-26735223 9.78e-01 20 chr3:52720061-52720081 9.46e-01 20 chr7:120035779-120035799 9.46e-01 20 chr19:2151855-2151875 2.93e-01 20 chr10:61666712-61666732 1.00e-02 1_[+1(5.57e-05)]_11 chr17:4458638-4458658 1.05e-03 20 chr11:134094379-13409439 7.71e-01 20 chr4:87515272-87515292 9.33e-01 20 chr3:133524680-133524700 5.17e-01 20 chr12:120427721-12042774 8.99e-01 20 chr16:84650328-84650348 4.12e-03 6_[+2(1.47e-05)]_6 chr2:11919430-11919450 9.93e-01 20 chr3:48699273-48699293 8.62e-01 20 chr10:75385756-75385776 3.09e-01 20 chr12:120907571-12090759 6.73e-03 20 chr22:44419873-44419893 2.30e-02 8_[+1(3.61e-05)]_4 chr5:176264803-176264823 7.60e-01 20 chr1:118472377-118472397 2.87e-01 20 chr17:40688575-40688595 4.62e-02 11_[+1(3.61e-05)]_1 chr12:56132323-56132343 9.77e-01 20 chr1:43148784-43148804 9.54e-01 20 chr13:31736121-31736141 9.85e-01 20 chr8:81397835-81397855 3.66e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n10.farnam.hpc.yale.internal ********************************************************************************