******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/MTA3.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3:186508344-186508364 1.0000 20 chr16:2011255-2011275 1.0000 20 chr14:106692648-10669266 1.0000 20 chr19:49996126-49996146 1.0000 20 chr6:30693798-30693818 1.0000 20 chr1:161676746-161676766 1.0000 20 chr14:51135458-51135478 1.0000 20 chr22:23249660-23249680 1.0000 20 chr6:138204812-138204832 1.0000 20 chr16:85957119-85957139 1.0000 20 chr14:35870080-35870100 1.0000 20 chr22:23249860-23249880 1.0000 20 chr1:145443094-145443114 1.0000 20 chr21:26952986-26953006 1.0000 20 chr21:26948712-26948732 1.0000 20 chr6:27834629-27834649 1.0000 20 chr3:16552598-16552618 1.0000 20 chr22:22377525-22377545 1.0000 20 chr6:27839583-27839603 1.0000 20 chr20:414393-414413 1.0000 20 chr12:46751431-46751451 1.0000 20 chr22:23244430-23244450 1.0000 20 chr4:185202588-185202608 1.0000 20 chr22:39919209-39919229 1.0000 20 chr5:149790548-149790568 1.0000 20 chr19:54712156-54712176 1.0000 20 chr22:23244225-23244245 1.0000 20 chr6:26250369-26250389 1.0000 20 chr6:26031958-26031978 1.0000 20 chr17:27052441-27052461 1.0000 20 chr13:46699151-46699171 1.0000 20 chrX:12968046-12968066 1.0000 20 chr13:46698926-46698946 1.0000 20 chr21:26950751-26950771 1.0000 20 chr2:43629601-43629621 1.0000 20 chr5:142594127-142594147 1.0000 20 chr17:79476285-79476305 1.0000 20 chr2:60743087-60743107 1.0000 20 chr22:22380997-22381017 1.0000 20 chr6:32413212-32413232 1.0000 20 chr10:74036458-74036478 1.0000 20 chr9:71192934-71192954 1.0000 20 chr1:147735947-147735967 1.0000 20 chr3:5025908-5025928 1.0000 20 chr6:112163240-112163260 1.0000 20 chr17:62493533-62493553 1.0000 20 chr6:26271006-26271026 1.0000 20 chr6:27782016-27782036 1.0000 20 chr4:38505530-38505550 1.0000 20 chr21:44819612-44819632 1.0000 20 chr10:61846823-61846843 1.0000 20 chr11:65899524-65899544 1.0000 20 chr8:60964369-60964389 1.0000 20 chr1:210547333-210547353 1.0000 20 chr6:27776684-27776704 1.0000 20 chr21:26950951-26950971 1.0000 20 chr17:8279897-8279917 1.0000 20 chr20:40091211-40091231 1.0000 20 chr7:56131972-56131992 1.0000 20 chr2:201988677-201988697 1.0000 20 chr9:36152021-36152041 1.0000 20 chr1:76262235-76262255 1.0000 20 chr2:88315896-88315916 1.0000 20 chr16:10982567-10982587 1.0000 20 chr21:36346688-36346708 1.0000 20 chr1:182592476-182592496 1.0000 20 chr14:65672280-65672300 1.0000 20 chr5:176727468-176727488 1.0000 20 chr6:26200214-26200234 1.0000 20 chr7:97762702-97762722 1.0000 20 chr15:59592731-59592751 1.0000 20 chr2:100752947-100752967 1.0000 20 chr12:67843519-67843539 1.0000 20 chrX:12996471-12996491 1.0000 20 chr1:183811799-183811819 1.0000 20 chr1:38495910-38495930 1.0000 20 chr18:21589802-21589822 1.0000 20 chr2:68666238-68666258 1.0000 20 chr2:25287309-25287329 1.0000 20 chr8:125624569-125624589 1.0000 20 chr11:65627551-65627571 1.0000 20 chr11:120215238-12021525 1.0000 20 chr1:160807892-160807912 1.0000 20 chr17:57920673-57920693 1.0000 20 chr14:31677577-31677597 1.0000 20 chr18:47013839-47013859 1.0000 20 chr15:45011972-45011992 1.0000 20 chr11:35165864-35165884 1.0000 20 chr1:12495918-12495938 1.0000 20 chr4:26133500-26133520 1.0000 20 chr14:65676974-65676994 1.0000 20 chr11:10332201-10332221 1.0000 20 chr1:172715625-172715645 1.0000 20 chr5:95615995-95616015 1.0000 20 chr22:40357567-40357587 1.0000 20 chr1:146556092-146556112 1.0000 20 chr17:62224592-62224612 1.0000 20 chr6:26056128-26056148 1.0000 20 chr20:35474668-35474688 1.0000 20 chr17:7482907-7482927 1.0000 20 chr17:56066073-56066093 1.0000 20 chr7:5566096-5566116 1.0000 20 chr9:123964381-123964401 1.0000 20 chr2:65615491-65615511 1.0000 20 chr8:42742962-42742982 1.0000 20 chr15:60928138-60928158 1.0000 20 chr13:42943376-42943396 1.0000 20 chr8:33371100-33371120 1.0000 20 chr5:118873676-118873696 1.0000 20 chr2:145140669-145140689 1.0000 20 chr6:70591856-70591876 1.0000 20 chr4:2939135-2939155 1.0000 20 chr1:110359236-110359256 1.0000 20 chr2:61068153-61068173 1.0000 20 chr13:50941094-50941114 1.0000 20 chr1:147806728-147806748 1.0000 20 chr19:58907232-58907252 1.0000 20 chr12:93578172-93578192 1.0000 20 chr8:42025646-42025666 1.0000 20 chr6:26216748-26216768 1.0000 20 chr6:52021012-52021032 1.0000 20 chr6:86353930-86353950 1.0000 20 chr2:142271587-142271607 1.0000 20 chr18:56658841-56658861 1.0000 20 chr16:27400805-27400825 1.0000 20 chr7:92271650-92271670 1.0000 20 chr15:70006730-70006750 1.0000 20 chr6:26046036-26046056 1.0000 20 chr11:112454207-11245422 1.0000 20 chr1:206939829-206939849 1.0000 20 chr2:197278773-197278793 1.0000 20 chr11:46997942-46997962 1.0000 20 chr3:170352552-170352572 1.0000 20 chr15:57252494-57252514 1.0000 20 chr3:99792786-99792806 1.0000 20 chr5:64362381-64362401 1.0000 20 chr11:122616998-12261701 1.0000 20 chr1:160139609-160139629 1.0000 20 chr4:104419621-104419641 1.0000 20 chr1:153918134-153918154 1.0000 20 chr3:127469750-127469770 1.0000 20 chr3:49314384-49314404 1.0000 20 chr6:135898485-135898505 1.0000 20 chr2:169352214-169352234 1.0000 20 chr8:101515119-101515139 1.0000 20 chr11:33915390-33915410 1.0000 20 chr10:104406079-10440609 1.0000 20 chr12:49520935-49520955 1.0000 20 chr6:30594566-30594586 1.0000 20 chr4:40230417-40230437 1.0000 20 chrX:48769067-48769087 1.0000 20 chr14:50550439-50550459 1.0000 20 chr4:185305575-185305595 1.0000 20 chr1:53102958-53102978 1.0000 20 chr3:189042668-189042688 1.0000 20 chr10:65467230-65467250 1.0000 20 chr2:214092337-214092357 1.0000 20 chr20:1516622-1516642 1.0000 20 chr16:75413427-75413447 1.0000 20 chr3:49066747-49066767 1.0000 20 chr7:26227490-26227510 1.0000 20 chr3:56787401-56787421 1.0000 20 chr10:97527837-97527857 1.0000 20 chr7:158449005-158449025 1.0000 20 chr19:1021691-1021711 1.0000 20 chr9:98487000-98487020 1.0000 20 chr21:26942178-26942198 1.0000 20 chr3:170350815-170350835 1.0000 20 chr12:9917576-9917596 1.0000 20 chr1:45150353-45150373 1.0000 20 chr6:157397188-157397208 1.0000 20 chr1:161736330-161736350 1.0000 20 chr10:104154586-10415460 1.0000 20 chr7:24795422-24795442 1.0000 20 chr16:57400593-57400613 1.0000 20 chr7:44999520-44999540 1.0000 20 chr15:66790377-66790397 1.0000 20 chr4:141712165-141712185 1.0000 20 chr4:26131966-26131986 1.0000 20 chr13:49066739-49066759 1.0000 20 chr6:17885156-17885176 1.0000 20 chr5:32583910-32583930 1.0000 20 chr7:83428083-83428103 1.0000 20 chr11:34256985-34257005 1.0000 20 chr3:49514197-49514217 1.0000 20 chr1:61784653-61784673 1.0000 20 chr12:124252331-12425235 1.0000 20 chr9:136810679-136810699 1.0000 20 chr17:27055404-27055424 1.0000 20 chr1:120204959-120204979 1.0000 20 chr6:26027193-26027213 1.0000 20 chr9:114745983-114746003 1.0000 20 chr10:64374335-64374355 1.0000 20 chr2:206511545-206511565 1.0000 20 chr17:37914470-37914490 1.0000 20 chr8:131021083-131021103 1.0000 20 chr7:97829853-97829873 1.0000 20 chr15:91235321-91235341 1.0000 20 chr2:160790375-160790395 1.0000 20 chr6:27834913-27834933 1.0000 20 chr7:20059552-20059572 1.0000 20 chr13:105636732-10563675 1.0000 20 chr18:3279587-3279607 1.0000 20 chr1:17231910-17231930 1.0000 20 chr3:186733922-186733942 1.0000 20 chr5:149780382-149780402 1.0000 20 chr3:56818072-56818092 1.0000 20 chr3:71136791-71136811 1.0000 20 chr2:100864196-100864216 1.0000 20 chr7:101577044-101577064 1.0000 20 chr10:61640957-61640977 1.0000 20 chr1:212852166-212852186 1.0000 20 chr20:48286401-48286421 1.0000 20 chr3:146221708-146221728 1.0000 20 chr19:10539046-10539066 1.0000 20 chr9:71268180-71268200 1.0000 20 chr12:123372216-12337223 1.0000 20 chr9:98585232-98585252 1.0000 20 chr13:114833073-11483309 1.0000 20 chr14:65788195-65788215 1.0000 20 chr16:23516280-23516300 1.0000 20 chr14:71990964-71990984 1.0000 20 chr18:77196109-77196129 1.0000 20 chr11:118319209-11831922 1.0000 20 chr5:171416414-171416434 1.0000 20 chr1:94073624-94073644 1.0000 20 chr12:94699472-94699492 1.0000 20 chr22:40732497-40732517 1.0000 20 chr2:38835072-38835092 1.0000 20 chr9:71193208-71193228 1.0000 20 chr8:116440008-116440028 1.0000 20 chr8:110537502-110537522 1.0000 20 chr1:12128533-12128553 1.0000 20 chr11:1876416-1876436 1.0000 20 chr11:62323179-62323199 1.0000 20 chr4:185455962-185455982 1.0000 20 chr3:176919631-176919651 1.0000 20 chr5:122783892-122783912 1.0000 20 chr17:48360825-48360845 1.0000 20 chr4:36334062-36334082 1.0000 20 chr7:86759337-86759357 1.0000 20 chr20:44987980-44988000 1.0000 20 chr2:216978532-216978552 1.0000 20 chr11:62359835-62359855 1.0000 20 chr1:174126434-174126454 1.0000 20 chr12:116633030-11663305 1.0000 20 chr11:62619020-62619040 1.0000 20 chr8:30932059-30932079 1.0000 20 chr5:95261813-95261833 1.0000 20 chr6:26157575-26157595 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_MTA3/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/MTA3.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.263 C 0.246 G 0.244 T 0.247 Background letter frequencies (from file dataset with add-one prior applied): A 0.263 C 0.246 G 0.244 T 0.247 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF YCASTBHC MEME-1 width = 8 sites = 25 llr = 178 E-value = 1.8e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif YCASTBHC MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::a:::2: pos.-specific C 6a:4:34a probability G :::5:21: matrix T 4::1a53: bits 2.0 * * * 1.8 ** * * 1.6 ** * * 1.4 ** * * Relative 1.2 ** * * Entropy 1.0 *** * * (10.3 bits) 0.8 *** * * 0.6 ***** * 0.4 ****** * 0.2 ****** * 0.0 -------- Multilevel CCAGTTCC consensus T C CT sequence GA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCASTBHC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr5:149780382-149780402 4 2.88e-05 AGC CCACTTCC CTGGGCCCA chr4:185305575-185305595 5 2.88e-05 CTGA CCACTTCC TTCCTTCC chr8:60964369-60964389 5 2.88e-05 CTAC CCACTTCC CACCCCAC chr21:44819612-44819632 1 2.88e-05 . ccacttcc ctctggggtt chr8:42742962-42742982 6 4.32e-05 ATCAT CCAGTTTC AAACTTT chr14:106692648-10669266 3 7.30e-05 AC CCACTTTC TGTAGTAAGA chr1:61784653-61784673 6 1.31e-04 ATAAC CCAGTGCC CTTTCAG chr1:110359236-110359256 11 1.60e-04 GTAAAATTTC TCACTTCC TC chr7:5566096-5566116 10 2.03e-04 GGATGGCGC CCAGTCTC CAG chr7:24795422-24795442 11 2.77e-04 AAGGTAAACC TCAGTTAC GG chr8:101515119-101515139 3 2.77e-04 CA CCACTCTC TCTCCACCAC chr9:36152021-36152041 2 2.77e-04 G CCAGTCAC CGTTTCCTGT chr3:186508344-186508364 9 2.77e-04 GAGTAACT CCAGTCAC CACT chr6:86353930-86353950 13 3.35e-04 ATACTCCGTT TCAGTCCC chr12:93578172-93578192 12 3.35e-04 CACCAGATGC CCAGTGAC T chr10:61640957-61640977 5 3.80e-04 CCTA CCACTCAC CACTGTTC chr8:125624569-125624589 1 4.68e-04 . CCATTTCC AGATGACTGC chr14:71990964-71990984 2 4.82e-04 c tcagtgtc tattatagtc chr22:23249860-23249880 4 4.82e-04 TAT TCAGTGTC CCAACCCAC chr4:40230417-40230437 2 5.12e-04 C TCACTCTC AGAGTTACTT chr18:77196109-77196129 5 5.84e-04 GCTC TCAGTTGC CGTGGAAG chr5:32583910-32583930 7 5.84e-04 GTTCCC TCAGTGAC ACAGAA chr18:56658841-56658861 1 7.17e-04 . TCATTTCC TGACCTTCAG chrX:12968046-12968066 4 7.17e-04 TTC CCACTGGC TCACAGAAG chr15:66790377-66790397 6 9.07e-04 ATAGG CCATTTGC GCACCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCASTBHC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:149780382-149780402 2.9e-05 3_[+1]_9 chr4:185305575-185305595 2.9e-05 4_[+1]_8 chr8:60964369-60964389 2.9e-05 4_[+1]_8 chr21:44819612-44819632 2.9e-05 [+1]_12 chr8:42742962-42742982 4.3e-05 5_[+1]_7 chr14:106692648-10669266 7.3e-05 2_[+1]_10 chr1:61784653-61784673 0.00013 5_[+1]_7 chr1:110359236-110359256 0.00016 10_[+1]_2 chr7:5566096-5566116 0.0002 9_[+1]_3 chr7:24795422-24795442 0.00028 10_[+1]_2 chr8:101515119-101515139 0.00028 2_[+1]_10 chr9:36152021-36152041 0.00028 1_[+1]_11 chr3:186508344-186508364 0.00028 8_[+1]_4 chr6:86353930-86353950 0.00034 12_[+1] chr12:93578172-93578192 0.00034 11_[+1]_1 chr10:61640957-61640977 0.00038 4_[+1]_8 chr8:125624569-125624589 0.00047 [+1]_12 chr14:71990964-71990984 0.00048 1_[+1]_11 chr22:23249860-23249880 0.00048 3_[+1]_9 chr4:40230417-40230437 0.00051 1_[+1]_11 chr18:77196109-77196129 0.00058 4_[+1]_8 chr5:32583910-32583930 0.00058 6_[+1]_6 chr18:56658841-56658861 0.00072 [+1]_12 chrX:12968046-12968066 0.00072 3_[+1]_9 chr15:66790377-66790397 0.00091 5_[+1]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCASTBHC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YCASTBHC width=8 seqs=25 chr5:149780382-149780402 ( 4) CCACTTCC 1 chr4:185305575-185305595 ( 5) CCACTTCC 1 chr8:60964369-60964389 ( 5) CCACTTCC 1 chr21:44819612-44819632 ( 1) CCACTTCC 1 chr8:42742962-42742982 ( 6) CCAGTTTC 1 chr14:106692648-10669266 ( 3) CCACTTTC 1 chr1:61784653-61784673 ( 6) CCAGTGCC 1 chr1:110359236-110359256 ( 11) TCACTTCC 1 chr7:5566096-5566116 ( 10) CCAGTCTC 1 chr7:24795422-24795442 ( 11) TCAGTTAC 1 chr8:101515119-101515139 ( 3) CCACTCTC 1 chr9:36152021-36152041 ( 2) CCAGTCAC 1 chr3:186508344-186508364 ( 9) CCAGTCAC 1 chr6:86353930-86353950 ( 13) TCAGTCCC 1 chr12:93578172-93578192 ( 12) CCAGTGAC 1 chr10:61640957-61640977 ( 5) CCACTCAC 1 chr8:125624569-125624589 ( 1) CCATTTCC 1 chr14:71990964-71990984 ( 2) TCAGTGTC 1 chr22:23249860-23249880 ( 4) TCAGTGTC 1 chr4:40230417-40230437 ( 2) TCACTCTC 1 chr18:77196109-77196129 ( 5) TCAGTTGC 1 chr5:32583910-32583930 ( 7) TCAGTGAC 1 chr18:56658841-56658861 ( 1) TCATTTCC 1 chrX:12968046-12968066 ( 4) CCACTGGC 1 chr15:66790377-66790397 ( 6) CCATTTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCASTBHC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.5045 E= 1.8e+000 -1129 138 -1129 54 -1129 202 -1129 -1129 193 -1129 -1129 -1129 -1129 70 97 -104 -1129 -1129 -1129 201 -1129 19 -3 96 -13 55 -102 18 -1129 202 -1129 -1129 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCASTBHC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 1.8e+000 0.000000 0.640000 0.000000 0.360000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.400000 0.480000 0.120000 0.000000 0.000000 0.000000 1.000000 0.000000 0.280000 0.240000 0.480000 0.240000 0.360000 0.120000 0.280000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCASTBHC MEME-1 regular expression -------------------------------------------------------------------------------- [CT]CA[GC]T[TCG][CTA]C -------------------------------------------------------------------------------- Time 1.87 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCTGAGS MEME-2 width = 8 sites = 8 llr = 74 E-value = 5.5e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCTGAGS MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::a:: pos.-specific C ::a::::4 probability G aa::9:85 matrix T :::a1:31 bits 2.0 **** 1.8 **** * 1.6 **** * 1.4 ****** Relative 1.2 ******* Entropy 1.0 ******* (13.4 bits) 0.8 ******* 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGCTGAGG consensus TC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCTGAGS MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:62619020-62619040 12 1.38e-05 agctactcgg ggctgagg c chr1:182592476-182592496 6 1.38e-05 GGAAA GGCTGAGG TCCTGGA chr17:8279897-8279917 2 1.38e-05 C GGCTGAGG CGGGCGCGCG chr11:112454207-11245422 11 2.78e-05 TGCCTGGGAG GGCTGAGC TA chr3:170352552-170352572 7 5.59e-05 TACTTT GGCTGATC CTACAG chr22:22380997-22381017 13 5.59e-05 CCTGTCCCGA GGCTGATC chr3:170350815-170350835 11 6.98e-05 CACCGAGTGT GGCTGAGT AA chr11:33915390-33915410 8 8.38e-05 TTTCTGG GGCTTAGG GGAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCTGAGS MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:62619020-62619040 1.4e-05 11_[+2]_1 chr1:182592476-182592496 1.4e-05 5_[+2]_7 chr17:8279897-8279917 1.4e-05 1_[+2]_11 chr11:112454207-11245422 2.8e-05 10_[+2]_2 chr3:170352552-170352572 5.6e-05 6_[+2]_6 chr22:22380997-22381017 5.6e-05 12_[+2] chr3:170350815-170350835 7e-05 10_[+2]_2 chr11:33915390-33915410 8.4e-05 7_[+2]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCTGAGS MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCTGAGS width=8 seqs=8 chr11:62619020-62619040 ( 12) GGCTGAGG 1 chr1:182592476-182592496 ( 6) GGCTGAGG 1 chr17:8279897-8279917 ( 2) GGCTGAGG 1 chr11:112454207-11245422 ( 11) GGCTGAGC 1 chr3:170352552-170352572 ( 7) GGCTGATC 1 chr22:22380997-22381017 ( 13) GGCTGATC 1 chr3:170350815-170350835 ( 11) GGCTGAGT 1 chr11:33915390-33915410 ( 8) GGCTTAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCTGAGS MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.40106 E= 5.5e+002 -965 -965 203 -965 -965 -965 203 -965 -965 202 -965 -965 -965 -965 -965 201 -965 -965 184 -98 193 -965 -965 -965 -965 -965 162 2 -965 61 103 -98 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCTGAGS MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 5.5e+002 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.875000 0.125000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.750000 0.250000 0.000000 0.375000 0.500000 0.125000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCTGAGS MEME-2 regular expression -------------------------------------------------------------------------------- GGCTGA[GT][GC] -------------------------------------------------------------------------------- Time 2.74 secs. ******************************************************************************** ******************************************************************************** MOTIF TGASTMAT MEME-3 width = 8 sites = 10 llr = 91 E-value = 3.3e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGASTMAT MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::a:34a: pos.-specific C :::6:6:: probability G :a:4:::: matrix T a:::7::a bits 2.0 ** * 1.8 *** ** 1.6 *** ** 1.4 *** ** Relative 1.2 *** ** Entropy 1.0 ******** (13.1 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGACTCAT consensus GAA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTMAT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:146221708-146221728 4 1.54e-05 TGG TGACTCAT TTGCAGAGT chr2:169352214-169352234 8 1.54e-05 GTAGTGA TGACTCAT GTGTG chr4:104419621-104419641 5 1.54e-05 TACA TGACTCAT GGCAGTAG chr1:160807892-160807912 5 1.54e-05 GCCC TGACTCAT TAGGAAAA chr12:94699472-94699492 9 3.07e-05 ATGTGAAA TGAGTCAT TTGG chr20:44987980-44988000 11 7.98e-05 gggtgtgatt tgagtaat gt chr11:34256985-34257005 5 7.98e-05 tgcc tgacacat agcaagag chr4:26131966-26131986 2 7.98e-05 A TGAGTAAT TAAGGACAGG chr6:30693798-30693818 12 1.14e-04 CTGAGAAGAA TGACAAAT C chr1:17231910-17231930 3 1.31e-04 gc tgagaaat gagttctgga -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTMAT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:146221708-146221728 1.5e-05 3_[+3]_9 chr2:169352214-169352234 1.5e-05 7_[+3]_5 chr4:104419621-104419641 1.5e-05 4_[+3]_8 chr1:160807892-160807912 1.5e-05 4_[+3]_8 chr12:94699472-94699492 3.1e-05 8_[+3]_4 chr20:44987980-44988000 8e-05 10_[+3]_2 chr11:34256985-34257005 8e-05 4_[+3]_8 chr4:26131966-26131986 8e-05 1_[+3]_11 chr6:30693798-30693818 0.00011 11_[+3]_1 chr1:17231910-17231930 0.00013 2_[+3]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTMAT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGASTMAT width=8 seqs=10 chr3:146221708-146221728 ( 4) TGACTCAT 1 chr2:169352214-169352234 ( 8) TGACTCAT 1 chr4:104419621-104419641 ( 5) TGACTCAT 1 chr1:160807892-160807912 ( 5) TGACTCAT 1 chr12:94699472-94699492 ( 9) TGAGTCAT 1 chr20:44987980-44988000 ( 11) TGAGTAAT 1 chr11:34256985-34257005 ( 5) TGACACAT 1 chr4:26131966-26131986 ( 2) TGAGTAAT 1 chr6:30693798-30693818 ( 12) TGACAAAT 1 chr1:17231910-17231930 ( 3) TGAGAAAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTMAT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.77211 E= 3.3e+002 -997 -997 -997 201 -997 -997 203 -997 193 -997 -997 -997 -997 129 71 -997 19 -997 -997 150 61 129 -997 -997 193 -997 -997 -997 -997 -997 -997 201 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTMAT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 3.3e+002 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.600000 0.400000 0.000000 0.300000 0.000000 0.000000 0.700000 0.400000 0.600000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTMAT MEME-3 regular expression -------------------------------------------------------------------------------- TGA[CG][TA][CA]AT -------------------------------------------------------------------------------- Time 6.03 secs. ******************************************************************************** ******************************************************************************** MOTIF AGGAAGTG MEME-4 width = 8 sites = 5 llr = 51 E-value = 2.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGGAAGTG MEME-4 Description -------------------------------------------------------------------------------- Simplified A a::aa::: pos.-specific C ::::::2: probability G :aa::a2a matrix T ::::::6: bits 2.0 ** * * 1.8 ****** * 1.6 ****** * 1.4 ****** * Relative 1.2 ****** * Entropy 1.0 ****** * (14.6 bits) 0.8 ****** * 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGGAAGTG consensus C sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGAAGTG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr22:40357567-40357587 11 1.59e-05 AGCAACCCAT AGGAAGTG AC chr11:120215238-12021525 5 1.59e-05 TGAG AGGAAGTG GTTCTTGT chr15:59592731-59592751 9 1.59e-05 AGCACAAG AGGAAGTG AGTC chr20:1516622-1516642 3 4.75e-05 CT AGGAAGCG CACACCATTG chr14:65672280-65672300 7 4.75e-05 GGAACA AGGAAGGG GCGTGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGAAGTG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr22:40357567-40357587 1.6e-05 10_[+4]_2 chr11:120215238-12021525 1.6e-05 4_[+4]_8 chr15:59592731-59592751 1.6e-05 8_[+4]_4 chr20:1516622-1516642 4.8e-05 2_[+4]_10 chr14:65672280-65672300 4.8e-05 6_[+4]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGAAGTG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGGAAGTG width=8 seqs=5 chr22:40357567-40357587 ( 11) AGGAAGTG 1 chr11:120215238-12021525 ( 5) AGGAAGTG 1 chr15:59592731-59592751 ( 9) AGGAAGTG 1 chr20:1516622-1516642 ( 3) AGGAAGCG 1 chr14:65672280-65672300 ( 7) AGGAAGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGAAGTG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.77541 E= 2.4e+003 193 -897 -897 -897 -897 -897 203 -897 -897 -897 203 -897 193 -897 -897 -897 193 -897 -897 -897 -897 -897 203 -897 -897 -30 -29 128 -897 -897 203 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGAAGTG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 2.4e+003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.200000 0.200000 0.600000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGAAGTG MEME-4 regular expression -------------------------------------------------------------------------------- AGGAAG[TCG]G -------------------------------------------------------------------------------- Time 9.12 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGGTGGG MEME-5 width = 8 sites = 2 llr = 22 E-value = 4.8e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGGTGGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a::::::: probability G ::aa:aaa matrix T :a::a::: bits 2.0 ******** 1.8 ******** 1.6 ******** 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (16.2 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTGGTGGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGTGGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr10:104406079-10440609 12 1.30e-05 AGGCTGCACT CTGGTGGG A chr4:26133500-26133520 11 1.30e-05 CTCACCACCA CTGGTGGG TG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGTGGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:104406079-10440609 1.3e-05 11_[+5]_1 chr4:26133500-26133520 1.3e-05 10_[+5]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGTGGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGGTGGG width=8 seqs=2 chr10:104406079-10440609 ( 12) CTGGTGGG 1 chr4:26133500-26133520 ( 11) CTGGTGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGTGGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.6653 E= 4.8e+003 -765 202 -765 -765 -765 -765 -765 201 -765 -765 203 -765 -765 -765 203 -765 -765 -765 -765 201 -765 -765 203 -765 -765 -765 203 -765 -765 -765 203 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGTGGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 4.8e+003 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGTGGG MEME-5 regular expression -------------------------------------------------------------------------------- CTGGTGGG -------------------------------------------------------------------------------- Time 11.97 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:186508344-186508364 1.18e-01 20 chr16:2011255-2011275 6.71e-01 20 chr14:106692648-10669266 9.01e-02 2_[+1(7.30e-05)]_10 chr19:49996126-49996146 2.91e-01 20 chr6:30693798-30693818 9.08e-02 20 chr1:161676746-161676766 8.62e-01 20 chr14:51135458-51135478 6.86e-01 20 chr22:23249660-23249680 7.66e-01 20 chr6:138204812-138204832 4.33e-01 20 chr16:85957119-85957139 3.12e-01 20 chr14:35870080-35870100 7.64e-01 20 chr22:23249860-23249880 1.30e-01 20 chr1:145443094-145443114 8.76e-01 20 chr21:26952986-26953006 9.48e-01 20 chr21:26948712-26948732 9.37e-01 20 chr6:27834629-27834649 5.97e-01 20 chr3:16552598-16552618 7.54e-02 20 chr22:22377525-22377545 2.86e-01 20 chr6:27839583-27839603 9.43e-01 20 chr20:414393-414413 7.82e-01 20 chr12:46751431-46751451 9.17e-01 20 chr22:23244430-23244450 3.77e-01 20 chr4:185202588-185202608 6.73e-01 20 chr22:39919209-39919229 4.50e-01 20 chr5:149790548-149790568 2.48e-01 20 chr19:54712156-54712176 1.03e-01 20 chr22:23244225-23244245 9.52e-02 20 chr6:26250369-26250389 7.97e-01 20 chr6:26031958-26031978 4.19e-01 20 chr17:27052441-27052461 8.12e-01 20 chr13:46699151-46699171 7.13e-01 20 chrX:12968046-12968066 6.07e-02 20 chr13:46698926-46698946 9.07e-01 20 chr21:26950751-26950771 1.91e-01 20 chr2:43629601-43629621 9.25e-01 20 chr5:142594127-142594147 4.07e-01 20 chr17:79476285-79476305 7.94e-01 20 chr2:60743087-60743107 8.38e-01 20 chr22:22380997-22381017 4.98e-03 12_[+2(5.59e-05)] chr6:32413212-32413232 8.78e-01 20 chr10:74036458-74036478 2.70e-01 20 chr9:71192934-71192954 3.90e-02 20 chr1:147735947-147735967 5.12e-01 20 chr3:5025908-5025928 9.96e-01 20 chr6:112163240-112163260 5.27e-01 20 chr17:62493533-62493553 3.95e-01 20 chr6:26271006-26271026 8.89e-01 20 chr6:27782016-27782036 4.82e-01 20 chr4:38505530-38505550 7.14e-01 20 chr21:44819612-44819632 2.46e-02 [+1(2.88e-05)]_12 chr10:61846823-61846843 2.30e-01 20 chr11:65899524-65899544 8.91e-01 20 chr8:60964369-60964389 9.68e-02 4_[+1(2.88e-05)]_8 chr1:210547333-210547353 8.06e-01 20 chr6:27776684-27776704 3.06e-01 20 chr21:26950951-26950971 8.28e-01 20 chr17:8279897-8279917 8.27e-03 1_[+2(1.38e-05)]_11 chr20:40091211-40091231 5.38e-01 20 chr7:56131972-56131992 6.56e-01 20 chr2:201988677-201988697 5.95e-01 20 chr9:36152021-36152041 1.57e-01 20 chr1:76262235-76262255 2.66e-01 20 chr2:88315896-88315916 9.33e-01 20 chr16:10982567-10982587 8.87e-01 20 chr21:36346688-36346708 9.62e-01 20 chr1:182592476-182592496 6.86e-03 5_[+2(1.38e-05)]_7 chr14:65672280-65672300 6.53e-02 6_[+4(4.75e-05)]_6 chr5:176727468-176727488 3.67e-01 20 chr6:26200214-26200234 8.45e-01 20 chr7:97762702-97762722 8.14e-01 20 chr15:59592731-59592751 3.30e-02 8_[+4(1.59e-05)]_4 chr2:100752947-100752967 5.54e-01 20 chr12:67843519-67843539 8.46e-01 20 chrX:12996471-12996491 9.45e-01 20 chr1:183811799-183811819 7.71e-01 20 chr1:38495910-38495930 6.72e-02 20 chr18:21589802-21589822 1.30e-02 20 chr2:68666238-68666258 7.42e-01 20 chr2:25287309-25287329 4.38e-01 20 chr8:125624569-125624589 1.24e-01 20 chr11:65627551-65627571 9.08e-01 20 chr11:120215238-12021525 1.51e-02 4_[+4(1.59e-05)]_8 chr1:160807892-160807912 1.26e-02 4_[+3(1.54e-05)]_8 chr17:57920673-57920693 2.38e-01 20 chr14:31677577-31677597 5.62e-01 20 chr18:47013839-47013859 9.33e-01 20 chr15:45011972-45011992 4.73e-01 20 chr11:35165864-35165884 8.21e-03 20 chr1:12495918-12495938 7.61e-01 20 chr4:26133500-26133520 8.02e-03 10_[+5(1.30e-05)]_2 chr14:65676974-65676994 3.70e-01 20 chr11:10332201-10332221 8.88e-01 20 chr1:172715625-172715645 2.39e-01 20 chr5:95615995-95616015 7.06e-01 20 chr22:40357567-40357587 1.38e-02 10_[+4(1.59e-05)]_2 chr1:146556092-146556112 9.70e-01 20 chr17:62224592-62224612 5.98e-01 20 chr6:26056128-26056148 7.84e-01 20 chr20:35474668-35474688 7.63e-01 20 chr17:7482907-7482927 6.28e-01 20 chr17:56066073-56066093 2.00e-01 20 chr7:5566096-5566116 1.18e-01 20 chr9:123964381-123964401 9.25e-01 20 chr2:65615491-65615511 4.67e-01 20 chr8:42742962-42742982 8.11e-02 5_[+1(4.32e-05)]_7 chr15:60928138-60928158 8.66e-01 20 chr13:42943376-42943396 3.76e-01 20 chr8:33371100-33371120 9.37e-01 20 chr5:118873676-118873696 1.61e-01 20 chr2:145140669-145140689 5.48e-01 20 chr6:70591856-70591876 1.91e-01 20 chr4:2939135-2939155 1.72e-01 20 chr1:110359236-110359256 1.66e-01 20 chr2:61068153-61068173 7.72e-01 20 chr13:50941094-50941114 4.03e-01 20 chr1:147806728-147806748 9.88e-01 20 chr19:58907232-58907252 2.75e-01 20 chr12:93578172-93578192 1.42e-01 20 chr8:42025646-42025666 6.43e-01 20 chr6:26216748-26216768 6.63e-01 20 chr6:52021012-52021032 2.78e-01 20 chr6:86353930-86353950 2.15e-01 20 chr2:142271587-142271607 3.04e-01 20 chr18:56658841-56658861 2.72e-01 20 chr16:27400805-27400825 8.72e-01 20 chr7:92271650-92271670 9.74e-01 20 chr15:70006730-70006750 2.77e-02 20 chr6:26046036-26046056 3.98e-01 20 chr11:112454207-11245422 1.84e-03 10_[+2(2.78e-05)]_2 chr1:206939829-206939849 5.07e-01 20 chr2:197278773-197278793 6.37e-01 20 chr11:46997942-46997962 6.73e-01 20 chr3:170352552-170352572 1.35e-02 6_[+2(5.59e-05)]_6 chr15:57252494-57252514 3.19e-01 20 chr3:99792786-99792806 4.87e-01 20 chr5:64362381-64362401 2.24e-01 20 chr11:122616998-12261701 4.63e-01 20 chr1:160139609-160139629 8.82e-01 20 chr4:104419621-104419641 1.73e-03 4_[+3(1.54e-05)]_8 chr1:153918134-153918154 4.96e-01 20 chr3:127469750-127469770 9.25e-01 20 chr3:49314384-49314404 7.98e-01 20 chr6:135898485-135898505 7.70e-01 20 chr2:169352214-169352234 4.27e-03 7_[+3(1.54e-05)]_5 chr8:101515119-101515139 3.23e-01 20 chr11:33915390-33915410 4.17e-02 7_[+2(8.38e-05)]_5 chr10:104406079-10440609 2.43e-03 11_[+5(1.30e-05)]_1 chr12:49520935-49520955 8.67e-01 20 chr6:30594566-30594586 3.17e-01 20 chr4:40230417-40230437 2.18e-01 20 chrX:48769067-48769087 9.76e-01 20 chr14:50550439-50550459 3.64e-01 20 chr4:185305575-185305595 2.35e-02 4_[+1(2.88e-05)]_8 chr1:53102958-53102978 8.41e-01 20 chr3:189042668-189042688 4.46e-01 20 chr10:65467230-65467250 7.74e-01 20 chr2:214092337-214092357 6.24e-02 20 chr20:1516622-1516642 6.88e-02 2_[+4(4.75e-05)]_10 chr16:75413427-75413447 4.98e-01 20 chr3:49066747-49066767 1.46e-01 20 chr7:26227490-26227510 9.21e-01 20 chr3:56787401-56787421 2.38e-01 20 chr10:97527837-97527857 6.77e-01 20 chr7:158449005-158449025 2.55e-01 20 chr19:1021691-1021711 2.02e-01 20 chr9:98487000-98487020 6.23e-02 20 chr21:26942178-26942198 4.68e-01 20 chr3:170350815-170350835 1.05e-02 10_[+2(6.98e-05)]_2 chr12:9917576-9917596 9.09e-01 20 chr1:45150353-45150373 7.59e-01 20 chr6:157397188-157397208 4.18e-01 20 chr1:161736330-161736350 1.02e-02 20 chr10:104154586-10415460 8.35e-01 20 chr7:24795422-24795442 1.05e-01 20 chr16:57400593-57400613 2.74e-01 20 chr7:44999520-44999540 2.07e-01 20 chr15:66790377-66790397 2.66e-01 20 chr4:141712165-141712185 4.19e-01 20 chr4:26131966-26131986 3.73e-02 1_[+3(7.98e-05)]_11 chr13:49066739-49066759 2.57e-01 20 chr6:17885156-17885176 9.94e-01 20 chr5:32583910-32583930 3.98e-02 20 chr7:83428083-83428103 6.59e-01 20 chr11:34256985-34257005 3.88e-03 4_[+3(7.98e-05)]_8 chr3:49514197-49514217 6.53e-01 20 chr1:61784653-61784673 4.91e-02 20 chr12:124252331-12425235 4.52e-01 20 chr9:136810679-136810699 4.57e-02 20 chr17:27055404-27055424 3.30e-01 20 chr1:120204959-120204979 4.79e-01 20 chr6:26027193-26027213 7.58e-02 20 chr9:114745983-114746003 9.58e-01 20 chr10:64374335-64374355 6.63e-01 20 chr2:206511545-206511565 2.62e-01 20 chr17:37914470-37914490 3.94e-01 20 chr8:131021083-131021103 4.30e-01 20 chr7:97829853-97829873 3.51e-01 20 chr15:91235321-91235341 2.27e-01 20 chr2:160790375-160790395 2.21e-01 20 chr6:27834913-27834933 7.96e-01 20 chr7:20059552-20059572 6.86e-01 20 chr13:105636732-10563675 3.09e-01 20 chr18:3279587-3279607 5.87e-01 20 chr1:17231910-17231930 4.40e-02 20 chr3:186733922-186733942 2.26e-01 20 chr5:149780382-149780402 5.46e-02 3_[+1(2.88e-05)]_9 chr3:56818072-56818092 3.75e-01 20 chr3:71136791-71136811 7.16e-01 20 chr2:100864196-100864216 6.79e-01 20 chr7:101577044-101577064 8.95e-01 20 chr10:61640957-61640977 2.11e-01 20 chr1:212852166-212852186 3.79e-01 20 chr20:48286401-48286421 8.51e-01 20 chr3:146221708-146221728 6.00e-04 3_[+3(1.54e-05)]_9 chr19:10539046-10539066 8.88e-01 20 chr9:71268180-71268200 8.05e-01 20 chr12:123372216-12337223 5.30e-01 20 chr9:98585232-98585252 6.87e-01 20 chr13:114833073-11483309 4.04e-01 20 chr14:65788195-65788215 8.94e-01 20 chr16:23516280-23516300 7.06e-01 20 chr14:71990964-71990984 1.29e-01 20 chr18:77196109-77196129 2.15e-01 20 chr11:118319209-11831922 8.12e-01 20 chr5:171416414-171416434 8.68e-02 20 chr1:94073624-94073644 3.95e-01 20 chr12:94699472-94699492 1.28e-02 8_[+3(3.07e-05)]_4 chr22:40732497-40732517 2.02e-01 20 chr2:38835072-38835092 6.31e-01 20 chr9:71193208-71193228 1.90e-01 20 chr8:116440008-116440028 8.37e-01 20 chr8:110537502-110537522 1.28e-01 20 chr1:12128533-12128553 5.99e-01 20 chr11:1876416-1876436 5.51e-01 20 chr11:62323179-62323199 5.64e-02 20 chr4:185455962-185455982 8.59e-01 20 chr3:176919631-176919651 5.84e-01 20 chr5:122783892-122783912 3.59e-01 20 chr17:48360825-48360845 4.82e-01 20 chr4:36334062-36334082 6.48e-01 20 chr7:86759337-86759357 4.32e-01 20 chr20:44987980-44988000 3.83e-02 10_[+3(7.98e-05)]_2 chr2:216978532-216978552 4.75e-01 20 chr11:62359835-62359855 1.98e-01 20 chr1:174126434-174126454 6.74e-01 20 chr12:116633030-11663305 2.34e-01 20 chr11:62619020-62619040 1.35e-02 11_[+2(1.38e-05)]_1 chr8:30932059-30932079 4.67e-01 20 chr5:95261813-95261833 9.45e-01 20 chr6:26157575-26157595 7.85e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n09.farnam.hpc.yale.internal ********************************************************************************