******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/MTA2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr22:38945762-38945782 1.0000 20 chr13:46367082-46367102 1.0000 20 chr2:196552580-196552600 1.0000 20 chr6:149713923-149713943 1.0000 20 chr13:58186291-58186311 1.0000 20 chr5:59201222-59201242 1.0000 20 chr21:37473483-37473503 1.0000 20 chr4:9851314-9851334 1.0000 20 chr10:78631687-78631707 1.0000 20 chr6:130792064-130792084 1.0000 20 chr7:15691506-15691526 1.0000 20 chr4:90143552-90143572 1.0000 20 chr7:122387135-122387155 1.0000 20 chr1:82693119-82693139 1.0000 20 chr4:151287948-151287968 1.0000 20 chr1:210497508-210497528 1.0000 20 chr5:111354760-111354780 1.0000 20 chr10:13984202-13984222 1.0000 20 chr4:182756624-182756644 1.0000 20 chr1:172103487-172103507 1.0000 20 chr5:162422768-162422788 1.0000 20 chr2:233622832-233622852 1.0000 20 chr10:121916356-12191637 1.0000 20 chr21:38564405-38564425 1.0000 20 chr3:118196208-118196228 1.0000 20 chr2:197749343-197749363 1.0000 20 chr15:64914794-64914814 1.0000 20 chr2:161122944-161122964 1.0000 20 chr13:76213781-76213801 1.0000 20 chr7:129015267-129015287 1.0000 20 chr18:39781316-39781336 1.0000 20 chr10:103762885-10376290 1.0000 20 chr20:6828943-6828963 1.0000 20 chr4:112800901-112800921 1.0000 20 chr9:114123361-114123381 1.0000 20 chr13:70140427-70140447 1.0000 20 chr9:2059605-2059625 1.0000 20 chr18:2644685-2644705 1.0000 20 chr4:62784781-62784801 1.0000 20 chr5:130832099-130832119 1.0000 20 chr1:99154062-99154082 1.0000 20 chr10:107587038-10758705 1.0000 20 chr13:75134664-75134684 1.0000 20 chr20:52962044-52962064 1.0000 20 chr3:29468204-29468224 1.0000 20 chr10:88844312-88844332 1.0000 20 chr2:136738405-136738425 1.0000 20 chr8:114628350-114628370 1.0000 20 chr11:120271363-12027138 1.0000 20 chr3:138735430-138735450 1.0000 20 chr20:45624366-45624386 1.0000 20 chr4:113782324-113782344 1.0000 20 chr4:155954210-155954230 1.0000 20 chr10:109426195-10942621 1.0000 20 chr6:131429408-131429428 1.0000 20 chr5:99805697-99805717 1.0000 20 chr9:91092342-91092362 1.0000 20 chr4:36043134-36043154 1.0000 20 chr5:23458044-23458064 1.0000 20 chr7:18780255-18780275 1.0000 20 chr12:13784927-13784947 1.0000 20 chr5:86418573-86418593 1.0000 20 chr4:132178582-132178602 1.0000 20 chr10:54773228-54773248 1.0000 20 chr8:33061372-33061392 1.0000 20 chr15:77703818-77703838 1.0000 20 chr13:78005770-78005790 1.0000 20 chr7:30220526-30220546 1.0000 20 chr7:157143230-157143250 1.0000 20 chr4:169645564-169645584 1.0000 20 chr6:140962789-140962809 1.0000 20 chr4:90949831-90949851 1.0000 20 chr8:114664738-114664758 1.0000 20 chr2:54808936-54808956 1.0000 20 chr10:34826757-34826777 1.0000 20 chr7:17414002-17414022 1.0000 20 chr7:81121749-81121769 1.0000 20 chr12:69786504-69786524 1.0000 20 chr1:219348222-219348242 1.0000 20 chr4:15810790-15810810 1.0000 20 chr10:119644968-11964498 1.0000 20 chr1:98955856-98955876 1.0000 20 chr1:102707627-102707647 1.0000 20 chr6:50245702-50245722 1.0000 20 chr2:10107709-10107729 1.0000 20 chr11:5521847-5521867 1.0000 20 chr14:36409631-36409651 1.0000 20 chrX:28792114-28792134 1.0000 20 chr2:216779001-216779021 1.0000 20 chr4:155346814-155346834 1.0000 20 chr2:49255428-49255448 1.0000 20 chr11:40190215-40190235 1.0000 20 chr2:76673165-76673185 1.0000 20 chr18:4908446-4908466 1.0000 20 chr5:107300595-107300615 1.0000 20 chr9:113775688-113775708 1.0000 20 chr11:42827945-42827965 1.0000 20 chr12:39475906-39475926 1.0000 20 chr6:22082158-22082178 1.0000 20 chr1:65389072-65389092 1.0000 20 chr22:36413815-36413835 1.0000 20 chr7:31851707-31851727 1.0000 20 chr8:39821775-39821795 1.0000 20 chr3:149160725-149160745 1.0000 20 chrX:24795963-24795983 1.0000 20 chr1:170514828-170514848 1.0000 20 chr12:46574078-46574098 1.0000 20 chr11:20534529-20534549 1.0000 20 chr3:69058406-69058426 1.0000 20 chr2:171013996-171014016 1.0000 20 chr6:37798141-37798161 1.0000 20 chr7:135650635-135650655 1.0000 20 chr6:113703284-113703304 1.0000 20 chr2:208588978-208588998 1.0000 20 chrX:17757060-17757080 1.0000 20 chr1:90823691-90823711 1.0000 20 chr6:99328601-99328621 1.0000 20 chr10:93733802-93733822 1.0000 20 chrX:134542911-134542931 1.0000 20 chr1:8727075-8727095 1.0000 20 chr2:191380615-191380635 1.0000 20 chr3:152848533-152848553 1.0000 20 chr8:131340743-131340763 1.0000 20 chr5:158202408-158202428 1.0000 20 chr14:71904788-71904808 1.0000 20 chr7:105913675-105913695 1.0000 20 chr15:101780199-10178021 1.0000 20 chr4:80259497-80259517 1.0000 20 chr1:88616124-88616144 1.0000 20 chr1:242977023-242977043 1.0000 20 chr4:151973667-151973687 1.0000 20 chr17:46639502-46639522 1.0000 20 chr2:213164842-213164862 1.0000 20 chr2:229455547-229455567 1.0000 20 chr15:66066241-66066261 1.0000 20 chr7:11766014-11766034 1.0000 20 chr4:40668088-40668108 1.0000 20 chr10:73254960-73254980 1.0000 20 chr7:2208024-2208044 1.0000 20 chr15:95128118-95128138 1.0000 20 chr3:73427481-73427501 1.0000 20 chr16:81751417-81751437 1.0000 20 chr6:57284931-57284951 1.0000 20 chr6:85120916-85120936 1.0000 20 chr11:121207303-12120732 1.0000 20 chr7:122269623-122269643 1.0000 20 chr3:88191383-88191403 1.0000 20 chr6:88392181-88392201 1.0000 20 chrX:96479336-96479356 1.0000 20 chr2:207426833-207426853 1.0000 20 chr12:24894318-24894338 1.0000 20 chr3:190142901-190142921 1.0000 20 chr2:71588979-71588999 1.0000 20 chr4:169604452-169604472 1.0000 20 chr8:9630961-9630981 1.0000 20 chr2:47145008-47145028 1.0000 20 chr2:80694552-80694572 1.0000 20 chr16:86152345-86152365 1.0000 20 chr2:192869520-192869540 1.0000 20 chr13:78768165-78768185 1.0000 20 chr2:182261194-182261214 1.0000 20 chr22:41024875-41024895 1.0000 20 chr20:10330954-10330974 1.0000 20 chr10:87807542-87807562 1.0000 20 chr3:197793950-197793970 1.0000 20 chr7:70128846-70128866 1.0000 20 chr2:146967686-146967706 1.0000 20 chr7:28542223-28542243 1.0000 20 chrX:11808117-11808137 1.0000 20 chr21:30521127-30521147 1.0000 20 chr4:162264537-162264557 1.0000 20 chr20:43680291-43680311 1.0000 20 chr7:69119949-69119969 1.0000 20 chr12:15924954-15924974 1.0000 20 chr7:156711915-156711935 1.0000 20 chr8:116858414-116858434 1.0000 20 chr6:85256344-85256364 1.0000 20 chr2:187611538-187611558 1.0000 20 chr6:131831471-131831491 1.0000 20 chr4:179553711-179553731 1.0000 20 chr15:53072617-53072637 1.0000 20 chrX:19895244-19895264 1.0000 20 chr4:169646409-169646429 1.0000 20 chrX:120805661-120805681 1.0000 20 chr6:40220393-40220413 1.0000 20 chr18:72485316-72485336 1.0000 20 chr5:133389820-133389840 1.0000 20 chr13:33718617-33718637 1.0000 20 chr11:34270203-34270223 1.0000 20 chr13:79568121-79568141 1.0000 20 chr4:1213230-1213250 1.0000 20 chr16:31297947-31297967 1.0000 20 chr16:48222586-48222606 1.0000 20 chr3:67099001-67099021 1.0000 20 chr20:10328334-10328354 1.0000 20 chr5:82958544-82958564 1.0000 20 chr20:7212176-7212196 1.0000 20 chr7:114209430-114209450 1.0000 20 chr12:104808632-10480865 1.0000 20 chr7:110964448-110964468 1.0000 20 chr9:132891443-132891463 1.0000 20 chr3:28293718-28293738 1.0000 20 chr7:36211283-36211303 1.0000 20 chr6:36527394-36527414 1.0000 20 chr6:140864197-140864217 1.0000 20 chr11:107550122-10755014 1.0000 20 chr5:58055689-58055709 1.0000 20 chr3:15508952-15508972 1.0000 20 chr6:119644140-119644160 1.0000 20 chr7:95344765-95344785 1.0000 20 chr9:87454002-87454022 1.0000 20 chr5:158348617-158348637 1.0000 20 chr18:4528620-4528640 1.0000 20 chr4:114539606-114539626 1.0000 20 chr8:100845417-100845437 1.0000 20 chr2:167625122-167625142 1.0000 20 chr2:106420012-106420032 1.0000 20 chr5:59558920-59558940 1.0000 20 chr7:34436248-34436268 1.0000 20 chr2:147209800-147209820 1.0000 20 chr5:103425270-103425290 1.0000 20 chr10:121916561-12191658 1.0000 20 chr3:115985068-115985088 1.0000 20 chr12:10548101-10548121 1.0000 20 chr11:9767172-9767192 1.0000 20 chr20:10408778-10408798 1.0000 20 chr14:100481894-10048191 1.0000 20 chr7:91427932-91427952 1.0000 20 chr6:139043722-139043742 1.0000 20 chr7:117680804-117680824 1.0000 20 chr2:76677502-76677522 1.0000 20 chr16:31712578-31712598 1.0000 20 chr6:140501622-140501642 1.0000 20 chrX:31623107-31623127 1.0000 20 chr4:175685049-175685069 1.0000 20 chr13:46615650-46615670 1.0000 20 chr10:82868793-82868813 1.0000 20 chr1:67660250-67660270 1.0000 20 chr6:21004407-21004427 1.0000 20 chr22:25968732-25968752 1.0000 20 chr12:23713691-23713711 1.0000 20 chr1:217200891-217200911 1.0000 20 chr3:100360473-100360493 1.0000 20 chr14:96539750-96539770 1.0000 20 chr7:87075438-87075458 1.0000 20 chr4:96463129-96463149 1.0000 20 chr6:130838753-130838773 1.0000 20 chr22:39513679-39513699 1.0000 20 chr4:111218212-111218232 1.0000 20 chr9:109744019-109744039 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_MTA2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/MTA2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.318 C 0.179 G 0.193 T 0.31 Background letter frequencies (from file dataset with add-one prior applied): A 0.318 C 0.179 G 0.193 T 0.31 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF YTAATTAG MEME-1 width = 8 sites = 46 llr = 291 E-value = 3.2e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif YTAATTAG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 2:8a::82 pos.-specific C 522::::1 probability G :::::226 matrix T 38::a8:1 bits 2.5 2.2 2.0 1.7 ** Relative 1.5 ** Entropy 1.2 **** (9.1 bits) 1.0 ****** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTAATTAG consensus T sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTAATTAG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:114209430-114209450 4 3.31e-05 TAG CTAATTAG TGCTATCAA chr10:87807542-87807562 7 3.31e-05 ACGTGT CTAATTAG ATAGAA chr6:130838753-130838773 10 9.24e-05 ATAGAACCA CTAATGAG GCA chr20:10408778-10408798 2 9.24e-05 A CTAATGAG AAGTGAAAAC chr4:114539606-114539626 6 9.24e-05 AGAGA CTCATTAG CCCAAAT chr12:15924954-15924974 2 9.24e-05 c ctaatgag catatgggga chr1:82693119-82693139 10 9.24e-05 GACCTTGAG CTCATTAG GGA chr6:140501622-140501642 8 1.12e-04 CAGGGGC CCAATTAG AAAAA chr6:140864197-140864217 9 1.12e-04 ATTAATGC CCAATTAG TGAT chr4:169604452-169604472 4 1.12e-04 CTG CCAATTAG TCAACATTT chr5:103425270-103425290 1 1.69e-04 . TTAATTAG CCACTGAGTC chr3:88191383-88191403 6 1.69e-04 GATGA TTAATTAG GTCAAAG chr7:31851707-31851727 5 1.69e-04 CATT TTAATTAG GCTGCTGT chr1:65389072-65389092 3 1.69e-04 AT TTAATTAG AATTGTGCAT chr4:15810790-15810810 1 2.28e-04 . ATAATTAG TACAATGATT chr2:171013996-171014016 6 3.13e-04 TACTG CTAATTAA AGGTGTA chr11:40190215-40190235 10 3.13e-04 CCTGCTTTG CTAATTAA TGC chr18:4528620-4528640 3 4.17e-04 ta ttaattgg catatagttg chr2:216779001-216779021 5 4.17e-04 gaaa ttaattgg cagttctg chr10:107587038-10758705 9 4.17e-04 TTGTTAAG TTAATTGG TGGT chr2:197749343-197749363 10 4.17e-04 ATAACTAAC TTAATTGG AGT chr2:147209800-147209820 13 4.85e-04 TCTTTAATTC TTCATTAG chr3:29468204-29468224 12 5.21e-04 TGTTTAAAAA ATAATTGG C chr18:39781316-39781336 8 5.21e-04 gcatcac ataattgg ttgat chr4:179553711-179553731 4 6.96e-04 CAT CTAATTAT CTCATGAAT chr7:2208024-2208044 12 6.96e-04 AAAAAGGTGC ATCATTAG C chr11:5521847-5521867 13 6.96e-04 agtaatagtc ctaattgc chr20:45624366-45624386 8 6.96e-04 TTTCAGA ATCATTAG CTTCT chr4:9851314-9851334 3 6.96e-04 GC ATAATGAG TGTGGACAGT chr16:48222586-48222606 6 7.32e-04 actta ctcattac gcaagtg chr6:131831471-131831491 10 7.32e-04 CAATGCCTG CTAATGAC TCC chr10:103762885-10376290 7 7.32e-04 TGGCCT CTAATGAC CAGGGC chr8:116858414-116858434 7 7.99e-04 ggaacc acaattag tgactt chr12:24894318-24894338 10 7.99e-04 GCATTGCTA CTAATTGA GAG chr8:114628350-114628370 3 7.99e-04 AG ACAATTAG ATTCAATAAT chr8:100845417-100845437 6 8.81e-04 TTGCT CCAATTAC CGATTAC chr2:191380615-191380635 1 8.81e-04 . CTAATGAA TACTTACGGG chr15:64914794-64914814 12 8.81e-04 TCATTATACG CTCATTAA T chr15:101780199-10178021 4 9.73e-04 AAA CCAATTAA TTTTAAAAA chr5:133389820-133389840 8 1.14e-03 GTGTCTT TTAATTAA GTCGG chr2:213164842-213164862 8 1.14e-03 TTCACAT ATAATTAC TTAAA chr5:158202408-158202428 4 1.18e-03 CCA TTAATGGG CAGGGACGT chr20:7212176-7212196 7 1.30e-03 TGGCAA ATAATTAA CTTATA chr22:39513679-39513699 7 1.54e-03 tcaccg ctcattat atgcta chr4:62784781-62784801 6 1.54e-03 GTCCT CTAATGAT TTGTGCG chr20:6828943-6828963 8 1.86e-03 tccccag ttaattat atgtt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTAATTAG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:114209430-114209450 3.3e-05 3_[+1]_9 chr10:87807542-87807562 3.3e-05 6_[+1]_6 chr6:130838753-130838773 9.2e-05 9_[+1]_3 chr20:10408778-10408798 9.2e-05 1_[+1]_11 chr4:114539606-114539626 9.2e-05 5_[+1]_7 chr12:15924954-15924974 9.2e-05 1_[+1]_11 chr1:82693119-82693139 9.2e-05 9_[+1]_3 chr6:140501622-140501642 0.00011 7_[+1]_5 chr6:140864197-140864217 0.00011 8_[+1]_4 chr4:169604452-169604472 0.00011 3_[+1]_9 chr5:103425270-103425290 0.00017 [+1]_12 chr3:88191383-88191403 0.00017 5_[+1]_7 chr7:31851707-31851727 0.00017 4_[+1]_8 chr1:65389072-65389092 0.00017 2_[+1]_10 chr4:15810790-15810810 0.00023 [+1]_12 chr2:171013996-171014016 0.00031 5_[+1]_7 chr11:40190215-40190235 0.00031 9_[+1]_3 chr18:4528620-4528640 0.00042 2_[+1]_10 chr2:216779001-216779021 0.00042 4_[+1]_8 chr10:107587038-10758705 0.00042 8_[+1]_4 chr2:197749343-197749363 0.00042 9_[+1]_3 chr2:147209800-147209820 0.00049 12_[+1] chr3:29468204-29468224 0.00052 11_[+1]_1 chr18:39781316-39781336 0.00052 7_[+1]_5 chr4:179553711-179553731 0.0007 3_[+1]_9 chr7:2208024-2208044 0.0007 11_[+1]_1 chr11:5521847-5521867 0.0007 12_[+1] chr20:45624366-45624386 0.0007 7_[+1]_5 chr4:9851314-9851334 0.0007 2_[+1]_10 chr16:48222586-48222606 0.00073 5_[+1]_7 chr6:131831471-131831491 0.00073 9_[+1]_3 chr10:103762885-10376290 0.00073 6_[+1]_6 chr8:116858414-116858434 0.0008 6_[+1]_6 chr12:24894318-24894338 0.0008 9_[+1]_3 chr8:114628350-114628370 0.0008 2_[+1]_10 chr8:100845417-100845437 0.00088 5_[+1]_7 chr2:191380615-191380635 0.00088 [+1]_12 chr15:64914794-64914814 0.00088 11_[+1]_1 chr15:101780199-10178021 0.00097 3_[+1]_9 chr5:133389820-133389840 0.0011 7_[+1]_5 chr2:213164842-213164862 0.0011 7_[+1]_5 chr5:158202408-158202428 0.0012 3_[+1]_9 chr20:7212176-7212196 0.0013 6_[+1]_6 chr22:39513679-39513699 0.0015 6_[+1]_6 chr4:62784781-62784801 0.0015 5_[+1]_7 chr20:6828943-6828963 0.0019 7_[+1]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTAATTAG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YTAATTAG width=8 seqs=46 chr7:114209430-114209450 ( 4) CTAATTAG 1 chr10:87807542-87807562 ( 7) CTAATTAG 1 chr6:130838753-130838773 ( 10) CTAATGAG 1 chr20:10408778-10408798 ( 2) CTAATGAG 1 chr4:114539606-114539626 ( 6) CTCATTAG 1 chr12:15924954-15924974 ( 2) CTAATGAG 1 chr1:82693119-82693139 ( 10) CTCATTAG 1 chr6:140501622-140501642 ( 8) CCAATTAG 1 chr6:140864197-140864217 ( 9) CCAATTAG 1 chr4:169604452-169604472 ( 4) CCAATTAG 1 chr5:103425270-103425290 ( 1) TTAATTAG 1 chr3:88191383-88191403 ( 6) TTAATTAG 1 chr7:31851707-31851727 ( 5) TTAATTAG 1 chr1:65389072-65389092 ( 3) TTAATTAG 1 chr4:15810790-15810810 ( 1) ATAATTAG 1 chr2:171013996-171014016 ( 6) CTAATTAA 1 chr11:40190215-40190235 ( 10) CTAATTAA 1 chr18:4528620-4528640 ( 3) TTAATTGG 1 chr2:216779001-216779021 ( 5) TTAATTGG 1 chr10:107587038-10758705 ( 9) TTAATTGG 1 chr2:197749343-197749363 ( 10) TTAATTGG 1 chr2:147209800-147209820 ( 13) TTCATTAG 1 chr3:29468204-29468224 ( 12) ATAATTGG 1 chr18:39781316-39781336 ( 8) ATAATTGG 1 chr4:179553711-179553731 ( 4) CTAATTAT 1 chr7:2208024-2208044 ( 12) ATCATTAG 1 chr11:5521847-5521867 ( 13) CTAATTGC 1 chr20:45624366-45624386 ( 8) ATCATTAG 1 chr4:9851314-9851334 ( 3) ATAATGAG 1 chr16:48222586-48222606 ( 6) CTCATTAC 1 chr6:131831471-131831491 ( 10) CTAATGAC 1 chr10:103762885-10376290 ( 7) CTAATGAC 1 chr8:116858414-116858434 ( 7) ACAATTAG 1 chr12:24894318-24894338 ( 10) CTAATTGA 1 chr8:114628350-114628370 ( 3) ACAATTAG 1 chr8:100845417-100845437 ( 6) CCAATTAC 1 chr2:191380615-191380635 ( 1) CTAATGAA 1 chr15:64914794-64914814 ( 12) CTCATTAA 1 chr15:101780199-10178021 ( 4) CCAATTAA 1 chr5:133389820-133389840 ( 8) TTAATTAA 1 chr2:213164842-213164862 ( 8) ATAATTAC 1 chr5:158202408-158202428 ( 4) TTAATGGG 1 chr20:7212176-7212196 ( 7) ATAATTAA 1 chr22:39513679-39513699 ( 7) CTCATTAT 1 chr4:62784781-62784801 ( 6) CTAATGAT 1 chr20:6828943-6828963 ( 8) TTAATTAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTAATTAG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 6.52968 E= 3.2e-006 -55 154 -1217 -25 -1217 -23 -1217 145 138 -4 -1217 -1217 165 -1217 -1217 -1217 -1217 -1217 -1217 169 -1217 -1217 2 137 134 -1217 2 -1217 -87 -46 165 -183 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTAATTAG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 46 E= 3.2e-006 0.217391 0.521739 0.000000 0.260870 0.000000 0.152174 0.000000 0.847826 0.826087 0.173913 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.195652 0.804348 0.804348 0.000000 0.195652 0.000000 0.173913 0.130435 0.608696 0.086957 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTAATTAG MEME-1 regular expression -------------------------------------------------------------------------------- [CTA]TAATTAG -------------------------------------------------------------------------------- Time 2.20 secs. ******************************************************************************** ******************************************************************************** MOTIF VCCACARC MEME-2 width = 8 sites = 13 llr = 109 E-value = 3.6e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif VCCACARC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 4::8:a42 pos.-specific C 3aa:a::6 probability G 3:::::5: matrix T :::2::12 bits 2.5 ** * 2.2 ** * 2.0 ** * 1.7 ** ** Relative 1.5 ** ** Entropy 1.2 ** ** (12.1 bits) 1.0 ***** 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ACCACAGC consensus C T AT sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VCCACARC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:42827945-42827965 2 3.59e-06 g cccacagc cagccttgcc chr15:95128118-95128138 6 1.38e-05 GTGTA ACCACAGC ACCATTA chr7:87075438-87075458 10 1.97e-05 AGTcgaaca cccacaac ctc chr8:9630961-9630981 2 1.97e-05 A CCCACAAC ATAAGATGGT chr1:172103487-172103507 9 3.66e-05 TACTTGCA ACCACAAC TCAA chr4:169646409-169646429 13 4.39e-05 GTAATTATAT GCCTCAGC chr7:18780255-18780275 3 5.63e-05 aa cccacagt ccctttgtgt chr13:78005770-78005790 9 8.04e-05 agaagttc accacagt tcaa chr4:113782324-113782344 11 9.30e-05 TGGGTGAGAA GCCACAGA TT chr4:1213230-1213250 4 9.92e-05 gct gcctcaac atcagacca chr2:229455547-229455567 5 1.54e-04 TTGT GCCACATC ATTAACCA chr8:39821775-39821795 3 2.36e-04 aa accacaaa cacttttgta chr4:155954210-155954230 10 2.52e-04 agagaatca acctcagt ggc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VCCACARC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:42827945-42827965 3.6e-06 1_[+2]_11 chr15:95128118-95128138 1.4e-05 5_[+2]_7 chr7:87075438-87075458 2e-05 9_[+2]_3 chr8:9630961-9630981 2e-05 1_[+2]_11 chr1:172103487-172103507 3.7e-05 8_[+2]_4 chr4:169646409-169646429 4.4e-05 12_[+2] chr7:18780255-18780275 5.6e-05 2_[+2]_10 chr13:78005770-78005790 8e-05 8_[+2]_4 chr4:113782324-113782344 9.3e-05 10_[+2]_2 chr4:1213230-1213250 9.9e-05 3_[+2]_9 chr2:229455547-229455567 0.00015 4_[+2]_8 chr8:39821775-39821795 0.00024 2_[+2]_10 chr4:155954210-155954230 0.00025 9_[+2]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VCCACARC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF VCCACARC width=8 seqs=13 chr11:42827945-42827965 ( 2) CCCACAGC 1 chr15:95128118-95128138 ( 6) ACCACAGC 1 chr7:87075438-87075458 ( 10) CCCACAAC 1 chr8:9630961-9630981 ( 2) CCCACAAC 1 chr1:172103487-172103507 ( 9) ACCACAAC 1 chr4:169646409-169646429 ( 13) GCCTCAGC 1 chr7:18780255-18780275 ( 3) CCCACAGT 1 chr13:78005770-78005790 ( 9) ACCACAGT 1 chr4:113782324-113782344 ( 11) GCCACAGA 1 chr4:1213230-1213250 ( 4) GCCTCAAC 1 chr2:229455547-229455567 ( 5) GCCACATC 1 chr8:39821775-39821795 ( 3) ACCACAAA 1 chr4:155954210-155954230 ( 10) ACCTCAGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VCCACARC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.12759 E= 3.6e+001 28 78 67 -1035 -1035 248 -1035 -1035 -1035 248 -1035 -1035 128 -1035 -1035 -43 -1035 248 -1035 -1035 165 -1035 -1035 -1035 28 -1035 148 -201 -104 178 -1035 -43 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VCCACARC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 3.6e+001 0.384615 0.307692 0.307692 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.769231 0.000000 0.000000 0.230769 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.384615 0.000000 0.538462 0.076923 0.153846 0.615385 0.000000 0.230769 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VCCACARC MEME-2 regular expression -------------------------------------------------------------------------------- [ACG]CC[AT]CA[GA][CT] -------------------------------------------------------------------------------- Time 2.94 secs. ******************************************************************************** ******************************************************************************** MOTIF TYTGTGGT MEME-3 width = 8 sites = 17 llr = 132 E-value = 4.0e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TYTGTGGT MEME-3 Description -------------------------------------------------------------------------------- Simplified A 21:::::: pos.-specific C 14::::1: probability G 2::a:a62 matrix T 55a:a:28 bits 2.5 * * 2.2 * * 2.0 * * 1.7 **** Relative 1.5 **** Entropy 1.2 **** * (11.2 bits) 1.0 ****** 0.7 ******* 0.5 ******* 0.2 ******** 0.0 -------- Multilevel TTTGTGGT consensus GC T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTGTGGT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:69119949-69119969 13 1.19e-05 AGGTTGTGTT TCTGTGGT chr2:233622832-233622852 3 1.19e-05 AA TCTGTGGT TTTGTGTTTT chr6:21004407-21004427 7 3.25e-05 GCTAAT TTTGTGGT ATTGGT chr2:207426833-207426853 11 3.25e-05 ACTGAGAAGA TTTGTGGT AA chr11:121207303-12120732 3 6.01e-05 TG TCTGTGGG GGCTCTGCAG chr6:140962789-140962809 9 8.51e-05 atattcaa tttgtggg aaaa chr2:167625122-167625142 11 1.30e-04 atggtatctc attgtggt tt chr16:86152345-86152365 8 1.30e-04 CCCAGGG ATTGTGGT TAatt chr5:59558920-59558940 10 1.48e-04 CTATAAACC TCTGTGCT AAC chr13:78768165-78768185 8 1.48e-04 AATATAT CCTGTGGT TAAGA chr2:76673165-76673185 13 1.89e-04 AACTTGTAAT TTTGTGTT chr7:17414002-17414022 11 1.89e-04 AACGAAACTT TTTGTGTT AA chr13:76213781-76213801 9 1.89e-04 GTCTCTCT GTTGTGGG TCAT chr5:158348617-158348637 6 2.01e-04 ACTGG GCTGTGTT AGCGTGC chr6:36527394-36527414 3 2.01e-04 AT GCTGTGTT CTCAGTTAAT chr5:82958544-82958564 13 4.42e-04 AATGTGCCTT GATGTGGT chr10:78631687-78631707 4 4.96e-04 CAT ATTGTGCT CATTTCTCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTGTGGT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:69119949-69119969 1.2e-05 12_[+3] chr2:233622832-233622852 1.2e-05 2_[+3]_10 chr6:21004407-21004427 3.2e-05 6_[+3]_6 chr2:207426833-207426853 3.2e-05 10_[+3]_2 chr11:121207303-12120732 6e-05 2_[+3]_10 chr6:140962789-140962809 8.5e-05 8_[+3]_4 chr2:167625122-167625142 0.00013 10_[+3]_2 chr16:86152345-86152365 0.00013 7_[+3]_5 chr5:59558920-59558940 0.00015 9_[+3]_3 chr13:78768165-78768185 0.00015 7_[+3]_5 chr2:76673165-76673185 0.00019 12_[+3] chr7:17414002-17414022 0.00019 10_[+3]_2 chr13:76213781-76213801 0.00019 8_[+3]_4 chr5:158348617-158348637 0.0002 5_[+3]_7 chr6:36527394-36527414 0.0002 2_[+3]_10 chr5:82958544-82958564 0.00044 12_[+3] chr10:78631687-78631707 0.0005 3_[+3]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTGTGGT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TYTGTGGT width=8 seqs=17 chr7:69119949-69119969 ( 13) TCTGTGGT 1 chr2:233622832-233622852 ( 3) TCTGTGGT 1 chr6:21004407-21004427 ( 7) TTTGTGGT 1 chr2:207426833-207426853 ( 11) TTTGTGGT 1 chr11:121207303-12120732 ( 3) TCTGTGGG 1 chr6:140962789-140962809 ( 9) TTTGTGGG 1 chr2:167625122-167625142 ( 11) ATTGTGGT 1 chr16:86152345-86152365 ( 8) ATTGTGGT 1 chr5:59558920-59558940 ( 10) TCTGTGCT 1 chr13:78768165-78768185 ( 8) CCTGTGGT 1 chr2:76673165-76673185 ( 13) TTTGTGTT 1 chr7:17414002-17414022 ( 11) TTTGTGTT 1 chr13:76213781-76213801 ( 9) GTTGTGGG 1 chr5:158348617-158348637 ( 6) GCTGTGTT 1 chr6:36527394-36527414 ( 3) GCTGTGTT 1 chr5:82958544-82958564 ( 13) GATGTGGT 1 chr10:78631687-78631707 ( 4) ATTGTGCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTGTGGT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.36909 E= 4.0e+001 -85 -160 28 77 -243 120 -1073 77 -1073 -1073 -1073 169 -1073 -1073 237 -1073 -1073 -1073 -1073 169 -1073 -1073 237 -1073 -1073 -60 174 -40 -1073 -1073 -13 141 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTGTGGT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 4.0e+001 0.176471 0.058824 0.235294 0.529412 0.058824 0.411765 0.000000 0.529412 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.117647 0.647059 0.235294 0.000000 0.000000 0.176471 0.823529 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTGTGGT MEME-3 regular expression -------------------------------------------------------------------------------- [TG][TC]TGTG[GT]T -------------------------------------------------------------------------------- Time 4.24 secs. ******************************************************************************** ******************************************************************************** MOTIF CMCTTSCC MEME-4 width = 8 sites = 3 llr = 33 E-value = 2.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CMCTTSCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :7:::::: pos.-specific C a3a::7aa probability G :::::3:: matrix T :::aa::: bits 2.5 * * ** 2.2 * * ** 2.0 * * ** 1.7 * *** ** Relative 1.5 * ****** Entropy 1.2 * ****** (15.9 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CACTTCCC consensus C G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMCTTSCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:139043722-139043742 6 5.62e-06 ACATT CACTTCCC CAAAAGT chrX:11808117-11808137 9 5.62e-06 caagtcct cacttccc tttt chr12:46574078-46574098 4 1.82e-05 aca cccttgcc gcacccatg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMCTTSCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:139043722-139043742 5.6e-06 5_[+4]_7 chrX:11808117-11808137 5.6e-06 8_[+4]_4 chr12:46574078-46574098 1.8e-05 3_[+4]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMCTTSCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CMCTTSCC width=8 seqs=3 chr6:139043722-139043742 ( 6) CACTTCCC 1 chrX:11808117-11808137 ( 9) CACTTCCC 1 chr12:46574078-46574098 ( 4) CCCTTGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMCTTSCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.5277 E= 2.4e+003 -823 248 -823 -823 107 90 -823 -823 -823 248 -823 -823 -823 -823 -823 169 -823 -823 -823 169 -823 189 78 -823 -823 248 -823 -823 -823 248 -823 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMCTTSCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 2.4e+003 0.000000 1.000000 0.000000 0.000000 0.666667 0.333333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.666667 0.333333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMCTTSCC MEME-4 regular expression -------------------------------------------------------------------------------- C[AC]CTT[CG]CC -------------------------------------------------------------------------------- Time 7.34 secs. ******************************************************************************** ******************************************************************************** MOTIF TYTGTTTC MEME-5 width = 8 sites = 4 llr = 40 E-value = 8.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TYTGTTTC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :5:::::a probability G :::a:::: matrix T a5a:aaa: bits 2.5 * * 2.2 * * 2.0 * * 1.7 * ****** Relative 1.5 * ****** Entropy 1.2 * ****** (14.4 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TCTGTTTC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTGTTTC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:15508952-15508972 13 1.77e-05 CTTGGTTCCA TCTGTTTC chr3:190142901-190142921 4 1.77e-05 AGC TCTGTTTC TAGATGTGC chr13:75134664-75134684 10 4.84e-05 gatcaagtt tttgtttc tac chr5:162422768-162422788 2 4.84e-05 G TTTGTTTC TGGATTCATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTGTTTC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:15508952-15508972 1.8e-05 12_[+5] chr3:190142901-190142921 1.8e-05 3_[+5]_9 chr13:75134664-75134684 4.8e-05 9_[+5]_3 chr5:162422768-162422788 4.8e-05 1_[+5]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTGTTTC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TYTGTTTC width=8 seqs=4 chr3:15508952-15508972 ( 13) TCTGTTTC 1 chr3:190142901-190142921 ( 4) TCTGTTTC 1 chr13:75134664-75134684 ( 10) TTTGTTTC 1 chr5:162422768-162422788 ( 2) TTTGTTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTGTTTC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.66445 E= 8.2e+003 -865 -865 -865 169 -865 148 -865 69 -865 -865 -865 169 -865 -865 237 -865 -865 -865 -865 169 -865 -865 -865 169 -865 -865 -865 169 -865 248 -865 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTGTTTC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 8.2e+003 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTGTTTC MEME-5 regular expression -------------------------------------------------------------------------------- T[CT]TGTTTC -------------------------------------------------------------------------------- Time 10.64 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr22:38945762-38945782 9.46e-01 20 chr13:46367082-46367102 7.03e-01 20 chr2:196552580-196552600 8.96e-01 20 chr6:149713923-149713943 2.58e-01 20 chr13:58186291-58186311 7.62e-01 20 chr5:59201222-59201242 6.19e-01 20 chr21:37473483-37473503 7.61e-01 20 chr4:9851314-9851334 1.59e-01 20 chr10:78631687-78631707 9.18e-03 20 chr6:130792064-130792084 9.60e-01 20 chr7:15691506-15691526 2.34e-01 20 chr4:90143552-90143572 9.78e-01 20 chr7:122387135-122387155 1.96e-01 20 chr1:82693119-82693139 6.49e-03 9_[+1(9.24e-05)]_3 chr4:151287948-151287968 5.34e-01 20 chr1:210497508-210497528 9.23e-01 20 chr5:111354760-111354780 9.77e-01 20 chr10:13984202-13984222 6.91e-01 20 chr4:182756624-182756644 7.09e-01 20 chr1:172103487-172103507 1.71e-02 8_[+2(3.66e-05)]_4 chr5:162422768-162422788 3.84e-02 1_[+5(4.84e-05)]_11 chr2:233622832-233622852 6.15e-03 2_[+3(1.19e-05)]_10 chr10:121916356-12191637 7.87e-01 20 chr21:38564405-38564425 6.78e-02 20 chr3:118196208-118196228 3.80e-01 20 chr2:197749343-197749363 1.30e-01 20 chr15:64914794-64914814 1.13e-01 20 chr2:161122944-161122964 1.56e-01 20 chr13:76213781-76213801 2.97e-02 20 chr7:129015267-129015287 9.77e-01 20 chr18:39781316-39781336 4.72e-02 20 chr10:103762885-10376290 9.90e-02 20 chr20:6828943-6828963 8.46e-02 20 chr4:112800901-112800921 1.13e-02 20 chr9:114123361-114123381 1.69e-01 20 chr13:70140427-70140447 4.92e-01 20 chr9:2059605-2059625 9.99e-01 20 chr18:2644685-2644705 7.55e-01 20 chr4:62784781-62784801 1.51e-02 20 chr5:130832099-130832119 2.71e-01 20 chr1:99154062-99154082 7.96e-01 20 chr10:107587038-10758705 3.16e-02 20 chr13:75134664-75134684 2.02e-02 9_[+5(4.84e-05)]_3 chr20:52962044-52962064 3.85e-01 20 chr3:29468204-29468224 2.61e-01 20 chr10:88844312-88844332 5.72e-01 20 chr2:136738405-136738425 1.00e+00 20 chr8:114628350-114628370 9.16e-02 20 chr11:120271363-12027138 1.35e-01 20 chr3:138735430-138735450 9.83e-01 20 chr20:45624366-45624386 4.76e-02 20 chr4:113782324-113782344 1.42e-01 10_[+2(9.30e-05)]_2 chr4:155954210-155954230 9.26e-03 20 chr10:109426195-10942621 1.13e-01 20 chr6:131429408-131429428 1.65e-01 20 chr5:99805697-99805717 2.14e-01 20 chr9:91092342-91092362 1.93e-01 20 chr4:36043134-36043154 9.19e-01 20 chr5:23458044-23458064 7.74e-01 20 chr7:18780255-18780275 2.89e-03 2_[+2(5.63e-05)]_10 chr12:13784927-13784947 3.25e-01 20 chr5:86418573-86418593 3.62e-01 20 chr4:132178582-132178602 4.93e-02 20 chr10:54773228-54773248 3.63e-01 20 chr8:33061372-33061392 9.93e-02 20 chr15:77703818-77703838 7.26e-01 20 chr13:78005770-78005790 6.86e-02 8_[+2(8.04e-05)]_4 chr7:30220526-30220546 9.85e-01 20 chr7:157143230-157143250 9.43e-01 20 chr4:169645564-169645584 2.64e-01 20 chr6:140962789-140962809 2.69e-02 8_[+3(8.51e-05)]_4 chr4:90949831-90949851 1.97e-01 20 chr8:114664738-114664758 8.68e-01 20 chr2:54808936-54808956 4.80e-01 20 chr10:34826757-34826777 9.09e-01 20 chr7:17414002-17414022 5.33e-02 20 chr7:81121749-81121769 2.11e-01 20 chr12:69786504-69786524 6.46e-01 20 chr1:219348222-219348242 7.06e-01 20 chr4:15810790-15810810 1.46e-01 20 chr10:119644968-11964498 8.40e-01 20 chr1:98955856-98955876 5.30e-01 20 chr1:102707627-102707647 1.88e-01 20 chr6:50245702-50245722 7.64e-01 20 chr2:10107709-10107729 6.35e-01 20 chr11:5521847-5521867 2.55e-01 20 chr14:36409631-36409651 9.65e-01 20 chrX:28792114-28792134 2.37e-01 20 chr2:216779001-216779021 1.12e-01 20 chr4:155346814-155346834 6.04e-01 20 chr2:49255428-49255448 6.85e-01 20 chr11:40190215-40190235 2.24e-02 20 chr2:76673165-76673185 3.21e-02 20 chr18:4908446-4908466 5.38e-01 20 chr5:107300595-107300615 7.26e-01 20 chr9:113775688-113775708 7.38e-01 20 chr11:42827945-42827965 6.74e-04 1_[+2(3.59e-06)]_11 chr12:39475906-39475926 9.11e-01 20 chr6:22082158-22082178 1.40e-01 20 chr1:65389072-65389092 4.00e-02 20 chr22:36413815-36413835 4.48e-02 20 chr7:31851707-31851727 5.89e-02 20 chr8:39821775-39821795 6.68e-02 20 chr3:149160725-149160745 6.40e-01 20 chrX:24795963-24795983 9.97e-01 20 chr1:170514828-170514848 9.54e-01 20 chr12:46574078-46574098 9.28e-03 3_[+4(1.82e-05)]_9 chr11:20534529-20534549 5.69e-01 20 chr3:69058406-69058426 5.86e-01 20 chr2:171013996-171014016 2.05e-01 20 chr6:37798141-37798161 6.25e-01 20 chr7:135650635-135650655 5.72e-01 20 chr6:113703284-113703304 4.75e-02 20 chr2:208588978-208588998 8.07e-01 20 chrX:17757060-17757080 9.89e-01 20 chr1:90823691-90823711 6.21e-01 20 chr6:99328601-99328621 7.39e-01 20 chr10:93733802-93733822 6.08e-01 20 chrX:134542911-134542931 7.55e-01 20 chr1:8727075-8727095 9.06e-01 20 chr2:191380615-191380635 1.89e-01 20 chr3:152848533-152848553 2.12e-01 20 chr8:131340743-131340763 9.10e-02 20 chr5:158202408-158202428 2.37e-01 20 chr14:71904788-71904808 3.11e-01 20 chr7:105913675-105913695 9.68e-01 20 chr15:101780199-10178021 2.84e-01 20 chr4:80259497-80259517 9.73e-01 20 chr1:88616124-88616144 4.34e-02 20 chr1:242977023-242977043 4.16e-01 20 chr4:151973667-151973687 6.13e-01 20 chr17:46639502-46639522 6.05e-01 20 chr2:213164842-213164862 3.21e-01 20 chr2:229455547-229455567 6.40e-03 20 chr15:66066241-66066261 7.33e-01 20 chr7:11766014-11766034 2.33e-01 20 chr4:40668088-40668108 4.22e-01 20 chr10:73254960-73254980 5.40e-01 20 chr7:2208024-2208044 9.16e-02 20 chr15:95128118-95128138 1.42e-02 5_[+2(1.38e-05)]_7 chr3:73427481-73427501 3.36e-01 20 chr16:81751417-81751437 1.33e-01 20 chr6:57284931-57284951 3.38e-01 20 chr6:85120916-85120936 5.65e-01 20 chr11:121207303-12120732 1.64e-02 2_[+3(6.01e-05)]_10 chr7:122269623-122269643 7.93e-01 20 chr3:88191383-88191403 1.26e-01 20 chr6:88392181-88392201 7.44e-01 20 chrX:96479336-96479356 2.58e-01 20 chr2:207426833-207426853 6.29e-02 10_[+3(3.25e-05)]_2 chr12:24894318-24894338 6.82e-02 20 chr3:190142901-190142921 3.43e-03 3_[+5(1.77e-05)]_9 chr2:71588979-71588999 9.98e-01 20 chr4:169604452-169604472 1.11e-01 20 chr8:9630961-9630981 2.94e-02 1_[+2(1.97e-05)]_11 chr2:47145008-47145028 2.37e-02 20 chr2:80694552-80694572 4.65e-01 20 chr16:86152345-86152365 2.31e-02 20 chr2:192869520-192869540 4.67e-01 20 chr13:78768165-78768185 7.87e-02 20 chr2:182261194-182261214 4.92e-01 20 chr22:41024875-41024895 9.37e-02 20 chr20:10330954-10330974 1.74e-01 20 chr10:87807542-87807562 4.71e-02 6_[+1(3.31e-05)]_6 chr3:197793950-197793970 2.80e-01 20 chr7:70128846-70128866 1.94e-01 20 chr2:146967686-146967706 8.05e-01 20 chr7:28542223-28542243 2.96e-01 20 chrX:11808117-11808137 3.07e-03 8_[+4(5.62e-06)]_4 chr21:30521127-30521147 9.05e-02 20 chr4:162264537-162264557 6.27e-01 20 chr20:43680291-43680311 2.20e-01 20 chr7:69119949-69119969 4.55e-04 12_[+3(1.19e-05)] chr12:15924954-15924974 5.84e-02 1_[+1(9.24e-05)]_11 chr7:156711915-156711935 4.79e-01 20 chr8:116858414-116858434 6.27e-03 20 chr6:85256344-85256364 6.44e-01 20 chr2:187611538-187611558 3.17e-01 20 chr6:131831471-131831491 1.12e-01 20 chr4:179553711-179553731 2.00e-01 20 chr15:53072617-53072637 5.62e-02 20 chrX:19895244-19895264 1.37e-01 20 chr4:169646409-169646429 4.02e-03 12_[+2(4.39e-05)] chrX:120805661-120805681 4.77e-01 20 chr6:40220393-40220413 9.06e-01 20 chr18:72485316-72485336 8.30e-01 20 chr5:133389820-133389840 2.95e-01 20 chr13:33718617-33718637 4.11e-02 20 chr11:34270203-34270223 9.24e-01 20 chr13:79568121-79568141 8.39e-01 20 chr4:1213230-1213250 4.14e-02 3_[+2(9.92e-05)]_9 chr16:31297947-31297967 2.52e-01 20 chr16:48222586-48222606 1.44e-01 20 chr3:67099001-67099021 4.66e-01 20 chr20:10328334-10328354 5.44e-01 20 chr5:82958544-82958564 8.93e-02 20 chr20:7212176-7212196 4.34e-01 20 chr7:114209430-114209450 1.07e-02 3_[+1(3.31e-05)]_9 chr12:104808632-10480865 4.35e-01 20 chr7:110964448-110964468 9.64e-01 20 chr9:132891443-132891463 2.69e-01 20 chr3:28293718-28293738 1.28e-01 20 chr7:36211283-36211303 5.40e-02 20 chr6:36527394-36527414 2.32e-02 20 chr6:140864197-140864217 1.76e-02 20 chr11:107550122-10755014 9.15e-01 20 chr5:58055689-58055709 9.42e-01 20 chr3:15508952-15508972 7.68e-03 12_[+5(1.77e-05)] chr6:119644140-119644160 3.06e-01 20 chr7:95344765-95344785 2.94e-01 20 chr9:87454002-87454022 2.29e-01 20 chr5:158348617-158348637 1.15e-01 20 chr18:4528620-4528640 1.38e-01 20 chr4:114539606-114539626 6.38e-03 5_[+1(9.24e-05)]_7 chr8:100845417-100845437 3.06e-02 20 chr2:167625122-167625142 2.52e-03 20 chr2:106420012-106420032 8.01e-01 20 chr5:59558920-59558940 1.06e-02 20 chr7:34436248-34436268 4.27e-01 20 chr2:147209800-147209820 5.63e-02 20 chr5:103425270-103425290 2.12e-03 20 chr10:121916561-12191658 6.05e-01 20 chr3:115985068-115985088 9.95e-01 20 chr12:10548101-10548121 9.84e-01 20 chr11:9767172-9767192 6.47e-02 20 chr20:10408778-10408798 1.65e-01 1_[+1(9.24e-05)]_11 chr14:100481894-10048191 2.64e-01 20 chr7:91427932-91427952 1.50e-01 20 chr6:139043722-139043742 3.15e-03 5_[+4(5.62e-06)]_7 chr7:117680804-117680824 9.91e-01 20 chr2:76677502-76677522 9.53e-01 20 chr16:31712578-31712598 2.36e-01 20 chr6:140501622-140501642 4.64e-02 20 chrX:31623107-31623127 2.69e-01 20 chr4:175685049-175685069 7.64e-01 20 chr13:46615650-46615670 8.55e-02 20 chr10:82868793-82868813 9.30e-01 20 chr1:67660250-67660270 7.54e-01 20 chr6:21004407-21004427 1.91e-02 6_[+3(3.25e-05)]_6 chr22:25968732-25968752 2.97e-01 20 chr12:23713691-23713711 8.46e-01 20 chr1:217200891-217200911 7.68e-01 20 chr3:100360473-100360493 3.94e-01 20 chr14:96539750-96539770 8.67e-01 20 chr7:87075438-87075458 1.69e-02 9_[+2(1.97e-05)]_3 chr4:96463129-96463149 2.50e-01 20 chr6:130838753-130838773 1.57e-02 9_[+1(9.24e-05)]_3 chr22:39513679-39513699 2.02e-02 20 chr4:111218212-111218232 2.09e-01 20 chr9:109744019-109744039 5.92e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n09.farnam.hpc.yale.internal ********************************************************************************