******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/MLLT1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr12:8122824-8122844 1.0000 20 chr18:2981304-2981324 1.0000 20 chr3:44090255-44090275 1.0000 20 chr17:73782837-73782857 1.0000 20 chr8:95448908-95448928 1.0000 20 chr16:81750324-81750344 1.0000 20 chr1:183558698-183558718 1.0000 20 chr22:18633598-18633618 1.0000 20 chr1:210574512-210574532 1.0000 20 chr16:21732065-21732085 1.0000 20 chr1:52345270-52345290 1.0000 20 chr16:2801681-2801701 1.0000 20 chr9:5630377-5630397 1.0000 20 chr16:81039472-81039492 1.0000 20 chr1:45771101-45771121 1.0000 20 chr19:6257652-6257672 1.0000 20 chr16:787937-787957 1.0000 20 chr3:61181042-61181062 1.0000 20 chr3:196594377-196594397 1.0000 20 chr17:62095496-62095516 1.0000 20 chr8:146176591-146176611 1.0000 20 chr10:112065827-11206584 1.0000 20 chr16:28961577-28961597 1.0000 20 chr4:668993-669013 1.0000 20 chr3:127770472-127770492 1.0000 20 chr22:41346408-41346428 1.0000 20 chr18:57566074-57566094 1.0000 20 chr2:162164394-162164414 1.0000 20 chr4:83810952-83810972 1.0000 20 chrX:1871899-1871919 1.0000 20 chr6:166795032-166795052 1.0000 20 chr9:139000631-139000651 1.0000 20 chr12:95397921-95397941 1.0000 20 chr5:393445-393465 1.0000 20 chr14:93528547-93528567 1.0000 20 chr22:43539801-43539821 1.0000 20 chr4:22603488-22603508 1.0000 20 chr5:157034641-157034661 1.0000 20 chr1:59763327-59763347 1.0000 20 chr15:45928279-45928299 1.0000 20 chr20:4979663-4979683 1.0000 20 chr10:27445672-27445692 1.0000 20 chr9:90078904-90078924 1.0000 20 chr13:43598682-43598702 1.0000 20 chr19:36313640-36313660 1.0000 20 chr3:27524011-27524031 1.0000 20 chr17:73128263-73128283 1.0000 20 chr19:11073233-11073253 1.0000 20 chr5:1105701-1105721 1.0000 20 chr14:22025644-22025664 1.0000 20 chr6:31520410-31520430 1.0000 20 chr1:715295-715315 1.0000 20 chr20:6900681-6900701 1.0000 20 chr3:180319574-180319594 1.0000 20 chr2:3382997-3383017 1.0000 20 chr10:82260390-82260410 1.0000 20 chr5:65104865-65104885 1.0000 20 chr7:74065669-74065689 1.0000 20 chr3:141120783-141120803 1.0000 20 chr14:56168489-56168509 1.0000 20 chr4:186318363-186318383 1.0000 20 chr3:35898710-35898730 1.0000 20 chr5:179951058-179951078 1.0000 20 chr17:26897375-26897395 1.0000 20 chr6:78253507-78253527 1.0000 20 chr17:5135053-5135073 1.0000 20 chr18:10948606-10948626 1.0000 20 chr3:154040911-154040931 1.0000 20 chr12:56324369-56324389 1.0000 20 chr19:270952-270972 1.0000 20 chr19:1904198-1904218 1.0000 20 chr1:6882893-6882913 1.0000 20 chr7:43767856-43767876 1.0000 20 chr1:206286027-206286047 1.0000 20 chr19:16606743-16606763 1.0000 20 chr16:3115888-3115908 1.0000 20 chr3:125239528-125239548 1.0000 20 chr2:217471927-217471947 1.0000 20 chr5:67730872-67730892 1.0000 20 chr10:98458794-98458814 1.0000 20 chr7:30517249-30517269 1.0000 20 chr9:133918272-133918292 1.0000 20 chr13:24847145-24847165 1.0000 20 chr12:69203271-69203291 1.0000 20 chr14:53209608-53209628 1.0000 20 chr17:30676484-30676504 1.0000 20 chr2:85554628-85554648 1.0000 20 chr7:35733360-35733380 1.0000 20 chr3:52313414-52313434 1.0000 20 chr19:50144704-50144724 1.0000 20 chr22:44140300-44140320 1.0000 20 chr16:11892616-11892636 1.0000 20 chr8:90768638-90768658 1.0000 20 chr9:132803362-132803382 1.0000 20 chr6:111279183-111279203 1.0000 20 chr3:28284677-28284697 1.0000 20 chr13:103453586-10345360 1.0000 20 chrX:7433400-7433420 1.0000 20 chr11:65676986-65677006 1.0000 20 chr9:19129287-19129307 1.0000 20 chr9:130833966-130833986 1.0000 20 chr1:230282060-230282080 1.0000 20 chr5:157835462-157835482 1.0000 20 chr13:113950994-11395101 1.0000 20 chr15:63261840-63261860 1.0000 20 chr3:165524204-165524224 1.0000 20 chr19:50170933-50170953 1.0000 20 chr11:9480999-9481019 1.0000 20 chr14:45720060-45720080 1.0000 20 chr1:40627635-40627655 1.0000 20 chr14:23789735-23789755 1.0000 20 chr17:5139078-5139098 1.0000 20 chr8:42912959-42912979 1.0000 20 chr12:112818766-11281878 1.0000 20 chr17:46618729-46618749 1.0000 20 chr2:25193844-25193864 1.0000 20 chr3:15835451-15835471 1.0000 20 chr15:42795465-42795485 1.0000 20 chr12:113338357-11333837 1.0000 20 chr5:133928118-133928138 1.0000 20 chr5:118409622-118409642 1.0000 20 chr22:42485963-42485983 1.0000 20 chr12:129297001-12929702 1.0000 20 chr11:32418140-32418160 1.0000 20 chr2:208577632-208577652 1.0000 20 chr10:18949970-18949990 1.0000 20 chr6:121655097-121655117 1.0000 20 chr19:48249532-48249552 1.0000 20 chr19:53238629-53238649 1.0000 20 chr8:18712540-18712560 1.0000 20 chr17:57231249-57231269 1.0000 20 chr15:91530490-91530510 1.0000 20 chr2:225447979-225447999 1.0000 20 chr19:39465847-39465867 1.0000 20 chr5:133968964-133968984 1.0000 20 chr6:42846847-42846867 1.0000 20 chr12:27165754-27165774 1.0000 20 chr1:28919725-28919745 1.0000 20 chr5:94413334-94413354 1.0000 20 chr15:63450474-63450494 1.0000 20 chr10:134386588-13438660 1.0000 20 chr3:4797936-4797956 1.0000 20 chr12:51156835-51156855 1.0000 20 chr4:35550729-35550749 1.0000 20 chr2:198074190-198074210 1.0000 20 chr10:103814857-10381487 1.0000 20 chr5:67584634-67584654 1.0000 20 chr2:232528638-232528658 1.0000 20 chr1:151300654-151300674 1.0000 20 chr4:38856667-38856687 1.0000 20 chr4:52711376-52711396 1.0000 20 chrX:74742915-74742935 1.0000 20 chr12:69724978-69724998 1.0000 20 chr15:44039152-44039172 1.0000 20 chr1:153702263-153702283 1.0000 20 chr21:32505421-32505441 1.0000 20 chr19:5358402-5358422 1.0000 20 chr1:28655151-28655171 1.0000 20 chr14:100536854-10053687 1.0000 20 chr13:77599608-77599628 1.0000 20 chr1:205561923-205561943 1.0000 20 chr2:191395274-191395294 1.0000 20 chr10:12170870-12170890 1.0000 20 chrX:52005438-52005458 1.0000 20 chr7:134673541-134673561 1.0000 20 chr22:50766208-50766228 1.0000 20 chr17:8767108-8767128 1.0000 20 chr3:196430344-196430364 1.0000 20 chr14:50548768-50548788 1.0000 20 chr22:17695732-17695752 1.0000 20 chr1:67634719-67634739 1.0000 20 chr8:105682348-105682368 1.0000 20 chr7:89802546-89802566 1.0000 20 chr21:35747441-35747461 1.0000 20 chr7:138721192-138721212 1.0000 20 chr12:68768706-68768726 1.0000 20 chr10:38690643-38690663 1.0000 20 chr21:47035181-47035201 1.0000 20 chr12:22777624-22777644 1.0000 20 chr3:128400489-128400509 1.0000 20 chr8:144102622-144102642 1.0000 20 chr7:134332957-134332977 1.0000 20 chr4:2846852-2846872 1.0000 20 chr10:62580453-62580473 1.0000 20 chr16:87425108-87425128 1.0000 20 chr4:2758612-2758632 1.0000 20 chr12:95211166-95211186 1.0000 20 chr10:74870944-74870964 1.0000 20 chr17:80493738-80493758 1.0000 20 chr6:130069642-130069662 1.0000 20 chr14:71111694-71111714 1.0000 20 chr1:107598973-107598993 1.0000 20 chr7:150726149-150726169 1.0000 20 chr6:149801830-149801850 1.0000 20 chr17:2615612-2615632 1.0000 20 chr16:50729116-50729136 1.0000 20 chr10:97520764-97520784 1.0000 20 chr17:41869154-41869174 1.0000 20 chr21:45578365-45578385 1.0000 20 chr19:7291931-7291951 1.0000 20 chr14:76621061-76621081 1.0000 20 chr10:103070955-10307097 1.0000 20 chr9:38319687-38319707 1.0000 20 chr12:121789317-12178933 1.0000 20 chr3:112065453-112065473 1.0000 20 chr12:12765978-12765998 1.0000 20 chr5:80598117-80598137 1.0000 20 chr8:110536350-110536370 1.0000 20 chr1:64689714-64689734 1.0000 20 chr8:145149032-145149052 1.0000 20 chr19:13952071-13952091 1.0000 20 chr1:37981093-37981113 1.0000 20 chr12:25538647-25538667 1.0000 20 chr4:22601598-22601618 1.0000 20 chr22:42343436-42343456 1.0000 20 chr15:52392054-52392074 1.0000 20 chr6:20689127-20689147 1.0000 20 chr19:48759637-48759657 1.0000 20 chr15:96877492-96877512 1.0000 20 chr20:35028190-35028210 1.0000 20 chr9:135230938-135230958 1.0000 20 chr1:27963691-27963711 1.0000 20 chr7:37872911-37872931 1.0000 20 chr2:48129178-48129198 1.0000 20 chr9:136792410-136792430 1.0000 20 chr15:78365009-78365029 1.0000 20 chr3:141747497-141747517 1.0000 20 chr9:139777280-139777300 1.0000 20 chr19:4399089-4399109 1.0000 20 chr10:101989767-10198978 1.0000 20 chr4:68565568-68565588 1.0000 20 chr9:130829327-130829347 1.0000 20 chr12:122241391-12224141 1.0000 20 chr11:75537186-75537206 1.0000 20 chr15:90642042-90642062 1.0000 20 chr1:205289649-205289669 1.0000 20 chr5:151129084-151129104 1.0000 20 chr12:122019289-12201930 1.0000 20 chr5:130968884-130968904 1.0000 20 chr1:22104553-22104573 1.0000 20 chr3:48513446-48513466 1.0000 20 chr1:179099188-179099208 1.0000 20 chr14:57858507-57858527 1.0000 20 chr3:97482782-97482802 1.0000 20 chr8:82020299-82020319 1.0000 20 chr4:185272853-185272873 1.0000 20 chr22:18634771-18634791 1.0000 20 chr6:31515959-31515979 1.0000 20 chr4:128801303-128801323 1.0000 20 chr6:149365727-149365747 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_MLLT1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/MLLT1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.239 C 0.26 G 0.257 T 0.244 Background letter frequencies (from file dataset with add-one prior applied): A 0.239 C 0.26 G 0.257 T 0.244 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CTGKGATY MEME-1 width = 8 sites = 18 llr = 153 E-value = 3.4e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGKGATY MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::13a:: pos.-specific C a:::1:14 probability G ::a57::: matrix T :a:4::96 bits 2.1 * * 1.9 *** * 1.7 *** ** 1.4 *** ** Relative 1.2 *** ** Entropy 1.0 *** *** (12.2 bits) 0.8 *** **** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTGGGATT consensus TA C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGKGATY MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:205289649-205289669 9 1.53e-05 ccacagtg ctgggatt acag chr17:80493738-80493758 12 1.53e-05 tcccgagtag ctgggatt a chr7:138721192-138721212 4 1.53e-05 ctt ctgggatt ttttgttgt chr3:28284677-28284697 1 1.53e-05 . ctgggatt acgggcgccc chr19:50144704-50144724 1 1.53e-05 . ctgggatt acaggcgtta chr7:30517249-30517269 13 1.53e-05 tcccgagtag ctgggatt chr16:28961577-28961597 4 1.53e-05 gtg ctgggatt acaggcgtg chr5:133928118-133928138 13 6.17e-05 CTTGTCAGCT CTGTGATC chr19:50170933-50170953 1 6.17e-05 . ctgtgatc aattggtgat chr10:38690643-38690663 2 7.59e-05 t ctggaatt cctgagctca chr16:11892616-11892636 4 8.95e-05 cgc ctgtaatt ctagcactt chr6:20689127-20689147 13 1.33e-04 agggagtgtt ctgtaatc chr7:150726149-150726169 2 1.33e-04 c ctgtaatc ccagcacttt chr3:15835451-15835471 1 1.33e-04 . ctgtaatc ccagctactt chr11:9480999-9481019 13 1.49e-04 ttgcagtgag ctgagatc chr9:90078904-90078924 9 1.49e-04 gcagcgag ctgagatc gcgc chr16:50729116-50729136 3 1.92e-04 tg ctgtcatt ctcgggagag chr19:7291931-7291951 4 2.22e-04 tag ctgggact acaggcgcc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGKGATY MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:205289649-205289669 1.5e-05 8_[+1]_4 chr17:80493738-80493758 1.5e-05 11_[+1]_1 chr7:138721192-138721212 1.5e-05 3_[+1]_9 chr3:28284677-28284697 1.5e-05 [+1]_12 chr19:50144704-50144724 1.5e-05 [+1]_12 chr7:30517249-30517269 1.5e-05 12_[+1] chr16:28961577-28961597 1.5e-05 3_[+1]_9 chr5:133928118-133928138 6.2e-05 12_[+1] chr19:50170933-50170953 6.2e-05 [+1]_12 chr10:38690643-38690663 7.6e-05 1_[+1]_11 chr16:11892616-11892636 8.9e-05 3_[+1]_9 chr6:20689127-20689147 0.00013 12_[+1] chr7:150726149-150726169 0.00013 1_[+1]_11 chr3:15835451-15835471 0.00013 [+1]_12 chr11:9480999-9481019 0.00015 12_[+1] chr9:90078904-90078924 0.00015 8_[+1]_4 chr16:50729116-50729136 0.00019 2_[+1]_10 chr19:7291931-7291951 0.00022 3_[+1]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGKGATY MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGKGATY width=8 seqs=18 chr1:205289649-205289669 ( 9) CTGGGATT 1 chr17:80493738-80493758 ( 12) CTGGGATT 1 chr7:138721192-138721212 ( 4) CTGGGATT 1 chr3:28284677-28284697 ( 1) CTGGGATT 1 chr19:50144704-50144724 ( 1) CTGGGATT 1 chr7:30517249-30517269 ( 13) CTGGGATT 1 chr16:28961577-28961597 ( 4) CTGGGATT 1 chr5:133928118-133928138 ( 13) CTGTGATC 1 chr19:50170933-50170953 ( 1) CTGTGATC 1 chr10:38690643-38690663 ( 2) CTGGAATT 1 chr16:11892616-11892636 ( 4) CTGTAATT 1 chr6:20689127-20689147 ( 13) CTGTAATC 1 chr7:150726149-150726169 ( 2) CTGTAATC 1 chr3:15835451-15835471 ( 1) CTGTAATC 1 chr11:9480999-9481019 ( 13) CTGAGATC 1 chr9:90078904-90078924 ( 9) CTGAGATC 1 chr16:50729116-50729136 ( 3) CTGTCATT 1 chr19:7291931-7291951 ( 4) CTGGGACT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGKGATY MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.33985 E= 3.4e-005 -1081 194 -1081 -1081 -1081 -1081 -1081 203 -1081 -1081 196 -1081 -110 -1081 96 67 22 -222 137 -1081 207 -1081 -1081 -1081 -1081 -222 -1081 195 -1081 58 -1081 132 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGKGATY MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 3.4e-005 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.111111 0.000000 0.500000 0.388889 0.277778 0.055556 0.666667 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.055556 0.000000 0.944444 0.000000 0.388889 0.000000 0.611111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGKGATY MEME-1 regular expression -------------------------------------------------------------------------------- CTG[GT][GA]AT[TC] -------------------------------------------------------------------------------- Time 2.15 secs. ******************************************************************************** ******************************************************************************** MOTIF CYCAGCCT MEME-2 width = 8 sites = 14 llr = 126 E-value = 8.2e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CYCAGCCT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::8:::: pos.-specific C a5a2:89: probability G ::::a2:: matrix T :5::::1a bits 2.1 * 1.9 * * * * 1.7 * * * ** 1.4 * * * ** Relative 1.2 * ****** Entropy 1.0 ******** (12.9 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCCAGCCT consensus T C G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCAGCCT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:179099188-179099208 1 1.67e-05 . ctcagcct cctgagtagc chr2:48129178-48129198 11 1.67e-05 attctcctgc ctcagcct cc chr12:51156835-51156855 7 1.67e-05 tcctgc ctcagcct cccaag chr15:63450474-63450494 10 1.67e-05 ttctcccgc ctcagcct ccc chr9:132803362-132803382 3 1.67e-05 ga ctcagcct cccaaggtgc chr7:35733360-35733380 2 1.67e-05 c ctcagcct cctgagtagc chr3:128400489-128400509 12 3.45e-05 ATAGCGATCG CCCAGCCT A chr5:133968964-133968984 3 6.86e-05 cg cccaggct ggagtgcaat chr3:125239528-125239548 4 6.86e-05 ttg cccaggct ggcgtgcag chr17:73128263-73128283 6 6.86e-05 tgtcg cccaggct gcggcgc chr7:134332957-134332977 13 8.68e-05 tcaccgcaac ctccgcct chr12:27165754-27165774 2 1.06e-04 a ccccgcct gtactaaaaa chr1:45771101-45771121 5 1.06e-04 ttgt ccccgcct ttctggac chr12:95211166-95211186 11 1.39e-04 gtcacgtact cccagctt gc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCAGCCT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:179099188-179099208 1.7e-05 [+2]_12 chr2:48129178-48129198 1.7e-05 10_[+2]_2 chr12:51156835-51156855 1.7e-05 6_[+2]_6 chr15:63450474-63450494 1.7e-05 9_[+2]_3 chr9:132803362-132803382 1.7e-05 2_[+2]_10 chr7:35733360-35733380 1.7e-05 1_[+2]_11 chr3:128400489-128400509 3.5e-05 11_[+2]_1 chr5:133968964-133968984 6.9e-05 2_[+2]_10 chr3:125239528-125239548 6.9e-05 3_[+2]_9 chr17:73128263-73128283 6.9e-05 5_[+2]_7 chr7:134332957-134332977 8.7e-05 12_[+2] chr12:27165754-27165774 0.00011 1_[+2]_11 chr1:45771101-45771121 0.00011 4_[+2]_8 chr12:95211166-95211186 0.00014 10_[+2]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCAGCCT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CYCAGCCT width=8 seqs=14 chr1:179099188-179099208 ( 1) CTCAGCCT 1 chr2:48129178-48129198 ( 11) CTCAGCCT 1 chr12:51156835-51156855 ( 7) CTCAGCCT 1 chr15:63450474-63450494 ( 10) CTCAGCCT 1 chr9:132803362-132803382 ( 3) CTCAGCCT 1 chr7:35733360-35733380 ( 2) CTCAGCCT 1 chr3:128400489-128400509 ( 12) CCCAGCCT 1 chr5:133968964-133968984 ( 3) CCCAGGCT 1 chr3:125239528-125239548 ( 4) CCCAGGCT 1 chr17:73128263-73128283 ( 6) CCCAGGCT 1 chr7:134332957-134332977 ( 13) CTCCGCCT 1 chr12:27165754-27165774 ( 2) CCCCGCCT 1 chr1:45771101-45771121 ( 5) CCCCGCCT 1 chr12:95211166-95211186 ( 11) CCCAGCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCAGCCT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 6.82574 E= 8.2e-003 -1045 194 -1045 -1045 -1045 94 -1045 103 -1045 194 -1045 -1045 172 -28 -1045 -1045 -1045 -1045 196 -1045 -1045 159 -26 -1045 -1045 184 -1045 -177 -1045 -1045 -1045 203 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCAGCCT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 8.2e-003 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 1.000000 0.000000 0.000000 0.785714 0.214286 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.785714 0.214286 0.000000 0.000000 0.928571 0.000000 0.071429 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCAGCCT MEME-2 regular expression -------------------------------------------------------------------------------- C[CT]C[AC]G[CG]CT -------------------------------------------------------------------------------- Time 2.94 secs. ******************************************************************************** ******************************************************************************** MOTIF WACWAAAA MEME-3 width = 8 sites = 12 llr = 110 E-value = 2.1e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif WACWAAAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 4a16a99a pos.-specific C ::9::11: probability G :::::::: matrix T 6::4:::: bits 2.1 * * * 1.9 * * * 1.7 * **** 1.4 ** **** Relative 1.2 ** **** Entropy 1.0 ******** (13.2 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TACAAAAA consensus A T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WACWAAAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr4:38856667-38856687 7 1.18e-05 aaaaaa tacaaaaa aattag chr1:59763327-59763347 10 1.18e-05 tactaaaaa tacaaaaa att chr19:6257652-6257672 3 1.18e-05 aa tacaaaaa ttagctgggc chr1:107598973-107598993 5 2.34e-05 aaca aacaaaaa aaacaGAG chr15:91530490-91530510 13 2.34e-05 caaaaacgaa aacaaaaa chr5:80598117-80598137 8 3.55e-05 ccttctc tactaaaa tacaa chr12:27165754-27165774 11 3.55e-05 accccgcctg tactaaaa at chr17:5139078-5139098 8 3.55e-05 ccatctc tactaaaa ataca chr14:45720060-45720080 13 3.55e-05 aaccggtctc tactaaaa chr12:95397921-95397941 2 9.45e-05 a aaaaaaaa aaaaattaaa chr15:52392054-52392074 2 1.31e-04 G AACAACAA TGGTCTCAGG chr12:68768706-68768726 10 1.94e-04 TCTAGAAGC AACTAACA ATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WACWAAAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:38856667-38856687 1.2e-05 6_[+3]_6 chr1:59763327-59763347 1.2e-05 9_[+3]_3 chr19:6257652-6257672 1.2e-05 2_[+3]_10 chr1:107598973-107598993 2.3e-05 4_[+3]_8 chr15:91530490-91530510 2.3e-05 12_[+3] chr5:80598117-80598137 3.5e-05 7_[+3]_5 chr12:27165754-27165774 3.5e-05 10_[+3]_2 chr17:5139078-5139098 3.5e-05 7_[+3]_5 chr14:45720060-45720080 3.5e-05 12_[+3] chr12:95397921-95397941 9.5e-05 1_[+3]_11 chr15:52392054-52392074 0.00013 1_[+3]_11 chr12:68768706-68768726 0.00019 9_[+3]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WACWAAAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WACWAAAA width=8 seqs=12 chr4:38856667-38856687 ( 7) TACAAAAA 1 chr1:59763327-59763347 ( 10) TACAAAAA 1 chr19:6257652-6257672 ( 3) TACAAAAA 1 chr1:107598973-107598993 ( 5) AACAAAAA 1 chr15:91530490-91530510 ( 13) AACAAAAA 1 chr5:80598117-80598137 ( 8) TACTAAAA 1 chr12:27165754-27165774 ( 11) TACTAAAA 1 chr17:5139078-5139098 ( 8) TACTAAAA 1 chr14:45720060-45720080 ( 13) TACTAAAA 1 chr12:95397921-95397941 ( 2) AAAAAAAA 1 chr15:52392054-52392074 ( 2) AACAACAA 1 chr12:68768706-68768726 ( 10) AACTAACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WACWAAAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.52481 E= 2.1e-002 80 -1023 -1023 126 207 -1023 -1023 -1023 -152 182 -1023 -1023 129 -1023 -1023 77 207 -1023 -1023 -1023 194 -164 -1023 -1023 194 -164 -1023 -1023 207 -1023 -1023 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WACWAAAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 2.1e-002 0.416667 0.000000 0.000000 0.583333 1.000000 0.000000 0.000000 0.000000 0.083333 0.916667 0.000000 0.000000 0.583333 0.000000 0.000000 0.416667 1.000000 0.000000 0.000000 0.000000 0.916667 0.083333 0.000000 0.000000 0.916667 0.083333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WACWAAAA MEME-3 regular expression -------------------------------------------------------------------------------- [TA]AC[AT]AAAA -------------------------------------------------------------------------------- Time 3.70 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTKTTTT MEME-4 width = 8 sites = 14 llr = 123 E-value = 2.8e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTKTTTT MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::3:: pos.-specific C ::::11:: probability G :::41:1: matrix T aaa6869a bits 2.1 *** * 1.9 *** * 1.7 *** ** 1.4 *** ** Relative 1.2 *** ** Entropy 1.0 ***** ** (12.7 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTTTTTT consensus G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTKTTTT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:134673541-134673561 12 1.26e-05 gcctggctaa tttttttt g chr1:28919725-28919745 1 1.26e-05 . tttttttt gagacggagt chr5:118409622-118409642 1 1.26e-05 . tttttttt gagacggagt chr13:103453586-10345360 11 1.26e-05 AGTAGTAAAt tttttttt tt chr12:8122824-8122844 13 1.26e-05 GCGCTCTCCt tttttttt chr12:69724978-69724998 1 3.81e-05 . TTTTTATT TACTGCTTGC chr5:94413334-94413354 13 5.11e-05 cagctaattg tttgtatt chr5:157835462-157835482 11 5.11e-05 tggctaattt tttgtatt tt chr9:19129287-19129307 9 5.11e-05 agctaatt tttgtatt ttta chr11:75537186-75537206 10 6.45e-05 CTTGTTTCG ttttcttt cct chr12:69203271-69203291 2 7.86e-05 A TTTGCTTT AAAAATTAGT chr5:179951058-179951078 1 1.05e-04 . TTTTGTTT GATTGTGCCA chr5:67584634-67584654 6 1.46e-04 TGTAG TTTGTCTT GGAGTAC chr7:138721192-138721212 13 1.87e-04 tctgggattt tttgttgt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTKTTTT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:134673541-134673561 1.3e-05 11_[+4]_1 chr1:28919725-28919745 1.3e-05 [+4]_12 chr5:118409622-118409642 1.3e-05 [+4]_12 chr13:103453586-10345360 1.3e-05 10_[+4]_2 chr12:8122824-8122844 1.3e-05 12_[+4] chr12:69724978-69724998 3.8e-05 [+4]_12 chr5:94413334-94413354 5.1e-05 12_[+4] chr5:157835462-157835482 5.1e-05 10_[+4]_2 chr9:19129287-19129307 5.1e-05 8_[+4]_4 chr11:75537186-75537206 6.4e-05 9_[+4]_3 chr12:69203271-69203291 7.9e-05 1_[+4]_11 chr5:179951058-179951078 0.00011 [+4]_12 chr5:67584634-67584654 0.00015 5_[+4]_7 chr7:138721192-138721212 0.00019 12_[+4] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTKTTTT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTKTTTT width=8 seqs=14 chr7:134673541-134673561 ( 12) TTTTTTTT 1 chr1:28919725-28919745 ( 1) TTTTTTTT 1 chr5:118409622-118409642 ( 1) TTTTTTTT 1 chr13:103453586-10345360 ( 11) TTTTTTTT 1 chr12:8122824-8122844 ( 13) TTTTTTTT 1 chr12:69724978-69724998 ( 1) TTTTTATT 1 chr5:94413334-94413354 ( 13) TTTGTATT 1 chr5:157835462-157835482 ( 11) TTTGTATT 1 chr9:19129287-19129307 ( 9) TTTGTATT 1 chr11:75537186-75537206 ( 10) TTTTCTTT 1 chr12:69203271-69203291 ( 2) TTTGCTTT 1 chr5:179951058-179951078 ( 1) TTTTGTTT 1 chr5:67584634-67584654 ( 6) TTTGTCTT 1 chr7:138721192-138721212 ( 13) TTTGTTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTKTTTT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.0786 E= 2.8e-002 -1045 -1045 -1045 203 -1045 -1045 -1045 203 -1045 -1045 -1045 203 -1045 -1045 74 123 -1045 -86 -185 169 26 -186 -1045 140 -1045 -1045 -185 193 -1045 -1045 -1045 203 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTKTTTT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 2.8e-002 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.428571 0.571429 0.000000 0.142857 0.071429 0.785714 0.285714 0.071429 0.000000 0.642857 0.000000 0.000000 0.071429 0.928571 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTKTTTT MEME-4 regular expression -------------------------------------------------------------------------------- TTT[TG]T[TA]TT -------------------------------------------------------------------------------- Time 7.02 secs. ******************************************************************************** ******************************************************************************** MOTIF YCRGGAGG MEME-5 width = 8 sites = 23 llr = 168 E-value = 1.8e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif YCRGGAGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::4::a:3 pos.-specific C 47:::::: probability G 1:5aa:97 matrix T 531:::11 bits 2.1 * 1.9 *** 1.7 *** 1.4 **** Relative 1.2 * **** Entropy 1.0 * **** (10.6 bits) 0.8 * ***** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCGGGAGG consensus CTA A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCRGGAGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:225447979-225447999 6 3.28e-05 gctac tcaggagg cttttaa chr6:121655097-121655117 7 3.28e-05 agctac tcgggagg ctgagg chr17:30676484-30676504 7 3.28e-05 agctac tcgggagg ctgagg chr22:18633598-18633618 12 3.28e-05 tcccagctac tcgggagg c chr7:74065669-74065689 13 6.78e-05 tcgcttgaac ccgggagg chr16:50729116-50729136 12 9.83e-05 gctgtcattc tcgggaga g chr22:42485963-42485983 8 9.83e-05 cacgagg tcaggaga tcgag chr13:77599608-77599628 6 1.29e-04 gcact ttgggagg acaaggc chr3:27524011-27524031 7 1.29e-04 agcact ttgggagg ccgagg chr3:44090255-44090275 2 1.29e-04 G TTAGGAGG TTTGAGGTTG chr1:40627635-40627655 13 1.62e-04 CTTGTCCCTG CCGGGAGA chr1:22104553-22104573 6 1.94e-04 tgaac ctgggagg cggaggt chr16:87425108-87425128 5 1.94e-04 gtgg cTGGGAGG CTGAGGGG chr3:154040911-154040931 1 3.53e-04 . tcaggagt tcgagaccaa chr14:22025644-22025664 2 3.53e-04 G CCTGGAGG GGCAGTAAAT chr22:41346408-41346428 12 3.53e-04 tcgcttgaat cctggagg c chr10:74870944-74870964 1 4.17e-04 . ccaggatg gtctcgatct chr13:24847145-24847165 9 4.17e-04 GAGAGGGC CCAGGATG GATC chr13:43598682-43598702 7 4.17e-04 tgttag ccaggatg gtctcg chr1:67634719-67634739 9 4.82e-04 aggctaag gcaggaga atcg chr10:112065827-11206584 3 4.82e-04 ag gcaggaga atcgcttgaa chr17:73782837-73782857 5 4.82e-04 tgag gcaggaga atcgcttg chr10:103814857-10381487 10 6.95e-04 cacctgagg ttgggagt tcg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCRGGAGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:225447979-225447999 3.3e-05 5_[+5]_7 chr6:121655097-121655117 3.3e-05 6_[+5]_6 chr17:30676484-30676504 3.3e-05 6_[+5]_6 chr22:18633598-18633618 3.3e-05 11_[+5]_1 chr7:74065669-74065689 6.8e-05 12_[+5] chr16:50729116-50729136 9.8e-05 11_[+5]_1 chr22:42485963-42485983 9.8e-05 7_[+5]_5 chr13:77599608-77599628 0.00013 5_[+5]_7 chr3:27524011-27524031 0.00013 6_[+5]_6 chr3:44090255-44090275 0.00013 1_[+5]_11 chr1:40627635-40627655 0.00016 12_[+5] chr1:22104553-22104573 0.00019 5_[+5]_7 chr16:87425108-87425128 0.00019 4_[+5]_8 chr3:154040911-154040931 0.00035 [+5]_12 chr14:22025644-22025664 0.00035 1_[+5]_11 chr22:41346408-41346428 0.00035 11_[+5]_1 chr10:74870944-74870964 0.00042 [+5]_12 chr13:24847145-24847165 0.00042 8_[+5]_4 chr13:43598682-43598702 0.00042 6_[+5]_6 chr1:67634719-67634739 0.00048 8_[+5]_4 chr10:112065827-11206584 0.00048 2_[+5]_10 chr17:73782837-73782857 0.00048 4_[+5]_8 chr10:103814857-10381487 0.0007 9_[+5]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCRGGAGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YCRGGAGG width=8 seqs=23 chr2:225447979-225447999 ( 6) TCAGGAGG 1 chr6:121655097-121655117 ( 7) TCGGGAGG 1 chr17:30676484-30676504 ( 7) TCGGGAGG 1 chr22:18633598-18633618 ( 12) TCGGGAGG 1 chr7:74065669-74065689 ( 13) CCGGGAGG 1 chr16:50729116-50729136 ( 12) TCGGGAGA 1 chr22:42485963-42485983 ( 8) TCAGGAGA 1 chr13:77599608-77599628 ( 6) TTGGGAGG 1 chr3:27524011-27524031 ( 7) TTGGGAGG 1 chr3:44090255-44090275 ( 2) TTAGGAGG 1 chr1:40627635-40627655 ( 13) CCGGGAGA 1 chr1:22104553-22104573 ( 6) CTGGGAGG 1 chr16:87425108-87425128 ( 5) CTGGGAGG 1 chr3:154040911-154040931 ( 1) TCAGGAGT 1 chr14:22025644-22025664 ( 2) CCTGGAGG 1 chr22:41346408-41346428 ( 12) CCTGGAGG 1 chr10:74870944-74870964 ( 1) CCAGGATG 1 chr13:24847145-24847165 ( 9) CCAGGATG 1 chr13:43598682-43598702 ( 7) CCAGGATG 1 chr1:67634719-67634739 ( 9) GCAGGAGA 1 chr10:112065827-11206584 ( 3) GCAGGAGA 1 chr17:73782837-73782857 ( 5) GCAGGAGA 1 chr10:103814857-10381487 ( 10) TTGGGAGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCRGGAGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.53746 E= 1.8e+000 -1117 59 -98 97 -1117 151 -1117 10 87 -1117 89 -149 -1117 -1117 196 -1117 -1117 -1117 196 -1117 207 -1117 -1117 -1117 -1117 -1117 176 -90 13 -1117 134 -149 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCRGGAGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 1.8e+000 0.000000 0.391304 0.130435 0.478261 0.000000 0.739130 0.000000 0.260870 0.434783 0.000000 0.478261 0.086957 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.869565 0.130435 0.260870 0.000000 0.652174 0.086957 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCRGGAGG MEME-5 regular expression -------------------------------------------------------------------------------- [TC][CT][GA]GGAG[GA] -------------------------------------------------------------------------------- Time 9.90 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:8122824-8122844 1.27e-02 11_[+4(1.26e-05)]_1 chr18:2981304-2981324 6.80e-01 20 chr3:44090255-44090275 2.26e-02 20 chr17:73782837-73782857 2.90e-01 20 chr8:95448908-95448928 6.26e-01 20 chr16:81750324-81750344 9.70e-01 20 chr1:183558698-183558718 7.91e-01 20 chr22:18633598-18633618 9.76e-03 11_[+5(3.28e-05)]_1 chr1:210574512-210574532 5.79e-01 20 chr16:21732065-21732085 5.28e-01 20 chr1:52345270-52345290 9.49e-01 20 chr16:2801681-2801701 2.78e-01 20 chr9:5630377-5630397 4.41e-01 20 chr16:81039472-81039492 9.94e-01 20 chr1:45771101-45771121 8.89e-02 20 chr19:6257652-6257672 7.38e-03 2_[+3(1.18e-05)]_10 chr16:787937-787957 4.41e-01 20 chr3:61181042-61181062 3.92e-02 20 chr3:196594377-196594397 2.92e-01 20 chr17:62095496-62095516 9.31e-01 20 chr8:146176591-146176611 6.32e-01 20 chr10:112065827-11206584 2.90e-01 20 chr16:28961577-28961597 1.26e-03 3_[+1(1.53e-05)]_9 chr4:668993-669013 3.04e-01 20 chr3:127770472-127770492 5.57e-01 20 chr22:41346408-41346428 3.73e-02 20 chr18:57566074-57566094 3.63e-01 20 chr2:162164394-162164414 5.77e-01 20 chr4:83810952-83810972 2.19e-01 20 chrX:1871899-1871919 6.07e-01 20 chr6:166795032-166795052 1.11e-02 20 chr9:139000631-139000651 9.90e-01 20 chr12:95397921-95397941 1.84e-01 [+3(9.45e-05)]_12 chr5:393445-393465 6.54e-01 20 chr14:93528547-93528567 8.76e-01 20 chr22:43539801-43539821 6.89e-02 20 chr4:22603488-22603508 4.89e-01 20 chr5:157034641-157034661 7.50e-01 20 chr1:59763327-59763347 2.67e-02 [+3(3.55e-05)]_1_[+3(1.18e-05)]_3 chr15:45928279-45928299 9.89e-01 20 chr20:4979663-4979683 6.15e-01 20 chr10:27445672-27445692 5.72e-02 20 chr9:90078904-90078924 1.26e-01 20 chr13:43598682-43598702 1.06e-01 20 chr19:36313640-36313660 8.36e-01 20 chr3:27524011-27524031 1.17e-01 20 chr17:73128263-73128283 3.80e-02 5_[+2(6.86e-05)]_7 chr19:11073233-11073253 2.39e-01 20 chr5:1105701-1105721 1.66e-01 20 chr14:22025644-22025664 1.20e-01 20 chr6:31520410-31520430 7.63e-01 20 chr1:715295-715315 8.06e-02 20 chr20:6900681-6900701 9.58e-01 20 chr3:180319574-180319594 7.08e-01 20 chr2:3382997-3383017 3.50e-01 20 chr10:82260390-82260410 4.85e-01 20 chr5:65104865-65104885 4.14e-01 20 chr7:74065669-74065689 2.11e-02 12_[+5(6.78e-05)] chr3:141120783-141120803 6.60e-01 20 chr14:56168489-56168509 7.98e-01 20 chr4:186318363-186318383 7.18e-01 20 chr3:35898710-35898730 6.41e-01 20 chr5:179951058-179951078 2.76e-02 20 chr17:26897375-26897395 3.21e-01 20 chr6:78253507-78253527 1.44e-01 20 chr17:5135053-5135073 4.36e-01 20 chr18:10948606-10948626 8.35e-01 20 chr3:154040911-154040931 9.01e-02 20 chr12:56324369-56324389 7.42e-01 20 chr19:270952-270972 3.29e-01 20 chr19:1904198-1904218 6.67e-01 20 chr1:6882893-6882913 5.74e-01 20 chr7:43767856-43767876 5.15e-01 20 chr1:206286027-206286047 9.75e-01 20 chr19:16606743-16606763 8.99e-01 20 chr16:3115888-3115908 1.11e-01 20 chr3:125239528-125239548 1.32e-02 3_[+2(6.86e-05)]_9 chr2:217471927-217471947 9.16e-01 20 chr5:67730872-67730892 9.82e-01 20 chr10:98458794-98458814 5.84e-01 20 chr7:30517249-30517269 1.73e-03 12_[+1(1.53e-05)] chr9:133918272-133918292 2.42e-01 20 chr13:24847145-24847165 2.92e-02 20 chr12:69203271-69203291 2.68e-02 1_[+4(7.86e-05)]_11 chr14:53209608-53209628 5.98e-01 20 chr17:30676484-30676504 5.92e-02 6_[+5(3.28e-05)]_6 chr2:85554628-85554648 3.90e-01 20 chr7:35733360-35733380 1.63e-02 1_[+2(1.67e-05)]_11 chr3:52313414-52313434 2.27e-01 20 chr19:50144704-50144724 1.26e-03 [+1(1.53e-05)]_12 chr22:44140300-44140320 8.77e-01 20 chr16:11892616-11892636 5.07e-02 3_[+1(8.95e-05)]_9 chr8:90768638-90768658 4.84e-01 20 chr9:132803362-132803382 2.80e-02 2_[+2(1.67e-05)]_10 chr6:111279183-111279203 7.25e-01 20 chr3:28284677-28284697 1.95e-03 [+1(1.53e-05)]_12 chr13:103453586-10345360 1.07e-02 9_[+4(1.26e-05)]_3 chrX:7433400-7433420 3.84e-01 20 chr11:65676986-65677006 3.28e-01 20 chr9:19129287-19129307 1.47e-02 8_[+4(5.11e-05)]_4 chr9:130833966-130833986 2.98e-01 20 chr1:230282060-230282080 7.18e-01 20 chr5:157835462-157835482 1.98e-02 10_[+4(5.11e-05)]_2 chr13:113950994-11395101 7.70e-01 20 chr15:63261840-63261860 4.59e-01 20 chr3:165524204-165524224 1.62e-01 20 chr19:50170933-50170953 5.75e-02 [+1(6.17e-05)]_12 chr11:9480999-9481019 1.56e-02 20 chr14:45720060-45720080 3.33e-02 12_[+3(3.55e-05)] chr1:40627635-40627655 2.90e-02 20 chr14:23789735-23789755 9.97e-01 20 chr17:5139078-5139098 3.42e-02 7_[+3(3.55e-05)]_5 chr8:42912959-42912979 7.84e-01 20 chr12:112818766-11281878 6.62e-01 20 chr17:46618729-46618749 1.14e-01 20 chr2:25193844-25193864 9.78e-01 20 chr3:15835451-15835471 5.83e-03 20 chr15:42795465-42795485 1.17e-01 20 chr12:113338357-11333837 3.24e-01 20 chr5:133928118-133928138 3.28e-02 12_[+1(6.17e-05)] chr5:118409622-118409642 6.25e-03 [+4(1.26e-05)]_12 chr22:42485963-42485983 7.56e-02 7_[+5(9.83e-05)]_5 chr12:129297001-12929702 3.78e-01 20 chr11:32418140-32418160 8.04e-01 20 chr2:208577632-208577652 8.58e-01 20 chr10:18949970-18949990 7.30e-01 20 chr6:121655097-121655117 5.92e-02 6_[+5(3.28e-05)]_6 chr19:48249532-48249552 6.56e-01 20 chr19:53238629-53238649 2.69e-01 20 chr8:18712540-18712560 8.54e-01 20 chr17:57231249-57231269 9.78e-01 20 chr15:91530490-91530510 7.76e-02 12_[+3(2.34e-05)] chr2:225447979-225447999 1.87e-02 5_[+5(3.28e-05)]_7 chr19:39465847-39465867 5.32e-01 20 chr5:133968964-133968984 1.94e-03 2_[+2(6.86e-05)]_10 chr6:42846847-42846867 1.22e-01 20 chr12:27165754-27165774 2.27e-04 10_[+3(3.55e-05)]_2 chr1:28919725-28919745 5.53e-03 [+4(1.26e-05)]_12 chr5:94413334-94413354 3.32e-03 12_[+4(5.11e-05)] chr15:63450474-63450494 3.95e-02 9_[+2(1.67e-05)]_3 chr10:134386588-13438660 8.58e-02 20 chr3:4797936-4797956 5.19e-01 20 chr12:51156835-51156855 3.96e-02 6_[+2(1.67e-05)]_6 chr4:35550729-35550749 5.50e-01 20 chr2:198074190-198074210 1.95e-02 20 chr10:103814857-10381487 2.32e-03 20 chr5:67584634-67584654 5.48e-03 20 chr2:232528638-232528658 6.03e-01 20 chr1:151300654-151300674 9.53e-01 20 chr4:38856667-38856687 5.62e-02 6_[+3(1.18e-05)]_6 chr4:52711376-52711396 1.90e-01 20 chrX:74742915-74742935 4.04e-01 20 chr12:69724978-69724998 5.68e-02 [+4(3.81e-05)]_12 chr15:44039152-44039172 3.51e-01 20 chr1:153702263-153702283 7.19e-01 20 chr21:32505421-32505441 3.38e-01 20 chr19:5358402-5358422 4.06e-01 20 chr1:28655151-28655171 3.46e-01 20 chr14:100536854-10053687 6.19e-01 20 chr13:77599608-77599628 8.86e-02 20 chr1:205561923-205561943 5.86e-01 20 chr2:191395274-191395294 2.29e-01 20 chr10:12170870-12170890 5.04e-01 20 chrX:52005438-52005458 9.63e-01 20 chr7:134673541-134673561 5.38e-03 11_[+4(1.26e-05)]_1 chr22:50766208-50766228 9.46e-01 20 chr17:8767108-8767128 3.27e-01 20 chr3:196430344-196430364 7.37e-01 20 chr14:50548768-50548788 1.60e-01 20 chr22:17695732-17695752 3.41e-01 20 chr1:67634719-67634739 1.50e-01 20 chr8:105682348-105682368 1.85e-01 20 chr7:89802546-89802566 7.52e-01 20 chr21:35747441-35747461 3.14e-01 20 chr7:138721192-138721212 3.35e-05 3_[+1(1.53e-05)]_9 chr12:68768706-68768726 6.94e-02 20 chr10:38690643-38690663 1.24e-02 1_[+1(7.59e-05)]_11 chr21:47035181-47035201 2.50e-01 20 chr12:22777624-22777644 8.01e-01 20 chr3:128400489-128400509 5.68e-02 11_[+2(3.45e-05)]_1 chr8:144102622-144102642 2.60e-01 20 chr7:134332957-134332977 9.09e-02 12_[+2(8.68e-05)] chr4:2846852-2846872 9.22e-01 20 chr10:62580453-62580473 9.74e-01 20 chr16:87425108-87425128 6.06e-02 20 chr4:2758612-2758632 8.76e-01 20 chr12:95211166-95211186 3.10e-02 20 chr10:74870944-74870964 1.56e-01 20 chr17:80493738-80493758 1.73e-03 11_[+1(1.53e-05)]_1 chr6:130069642-130069662 7.81e-01 20 chr14:71111694-71111714 1.55e-01 20 chr1:107598973-107598993 9.38e-02 4_[+3(2.34e-05)]_8 chr7:150726149-150726169 6.78e-03 20 chr6:149801830-149801850 1.48e-01 20 chr17:2615612-2615632 9.54e-01 20 chr16:50729116-50729136 8.22e-04 11_[+5(9.83e-05)]_1 chr10:97520764-97520784 2.51e-01 20 chr17:41869154-41869174 5.62e-01 20 chr21:45578365-45578385 5.60e-01 20 chr19:7291931-7291951 2.28e-02 20 chr14:76621061-76621081 8.73e-01 20 chr10:103070955-10307097 4.93e-01 20 chr9:38319687-38319707 2.67e-01 20 chr12:121789317-12178933 6.86e-01 20 chr3:112065453-112065473 5.31e-01 20 chr12:12765978-12765998 2.15e-01 20 chr5:80598117-80598137 2.68e-02 7_[+3(3.55e-05)]_5 chr8:110536350-110536370 3.00e-01 20 chr1:64689714-64689734 4.54e-01 20 chr8:145149032-145149052 9.81e-01 20 chr19:13952071-13952091 8.10e-01 20 chr1:37981093-37981113 4.71e-01 20 chr12:25538647-25538667 9.41e-01 20 chr4:22601598-22601618 4.41e-02 20 chr22:42343436-42343456 2.74e-01 20 chr15:52392054-52392074 1.64e-01 20 chr6:20689127-20689147 9.84e-03 20 chr19:48759637-48759657 8.82e-01 20 chr15:96877492-96877512 9.25e-01 20 chr20:35028190-35028210 6.23e-01 20 chr9:135230938-135230958 8.66e-01 20 chr1:27963691-27963711 3.15e-01 20 chr7:37872911-37872931 7.95e-01 20 chr2:48129178-48129198 2.28e-02 10_[+2(1.67e-05)]_2 chr9:136792410-136792430 1.21e-01 20 chr15:78365009-78365029 4.67e-01 20 chr3:141747497-141747517 8.32e-01 20 chr9:139777280-139777300 1.05e-02 20 chr19:4399089-4399109 8.01e-01 20 chr10:101989767-10198978 5.65e-01 20 chr4:68565568-68565588 8.05e-01 20 chr9:130829327-130829347 4.66e-01 20 chr12:122241391-12224141 9.59e-01 20 chr11:75537186-75537206 1.02e-01 9_[+4(6.45e-05)]_3 chr15:90642042-90642062 9.75e-01 20 chr1:205289649-205289669 1.53e-03 8_[+1(1.53e-05)]_4 chr5:151129084-151129104 4.34e-02 20 chr12:122019289-12201930 9.21e-01 20 chr5:130968884-130968904 8.23e-01 20 chr1:22104553-22104573 8.42e-02 20 chr3:48513446-48513466 9.81e-01 20 chr1:179099188-179099208 1.63e-02 [+2(1.67e-05)]_12 chr14:57858507-57858527 3.56e-01 20 chr3:97482782-97482802 9.81e-01 20 chr8:82020299-82020319 7.56e-01 20 chr4:185272853-185272873 9.12e-01 20 chr22:18634771-18634791 7.11e-01 20 chr6:31515959-31515979 9.03e-01 20 chr4:128801303-128801323 9.01e-01 20 chr6:149365727-149365747 6.76e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n09.farnam.hpc.yale.internal ********************************************************************************