******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/MEF2C.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:62981709-62981729 1.0000 20 chr10:64467777-64467797 1.0000 20 chr11:66185866-66185886 1.0000 20 chr7:28663136-28663156 1.0000 20 chr4:47566553-47566573 1.0000 20 chr18:56810869-56810889 1.0000 20 chr6:24933367-24933387 1.0000 20 chr7:18535255-18535275 1.0000 20 chr17:38754294-38754314 1.0000 20 chr3:35634235-35634255 1.0000 20 chr17:48241409-48241429 1.0000 20 chr6:132726516-132726536 1.0000 20 chr18:9354445-9354465 1.0000 20 chr22:20234880-20234900 1.0000 20 chr10:100234568-10023458 1.0000 20 chr22:43396611-43396631 1.0000 20 chr16:17441327-17441347 1.0000 20 chr1:53712106-53712126 1.0000 20 chr10:9373703-9373723 1.0000 20 chr12:52430789-52430809 1.0000 20 chr8:56841718-56841738 1.0000 20 chr2:225835226-225835246 1.0000 20 chr10:3668683-3668703 1.0000 20 chr21:33508426-33508446 1.0000 20 chr2:55523710-55523730 1.0000 20 chr5:148185754-148185774 1.0000 20 chr7:74064492-74064512 1.0000 20 chr9:102130747-102130767 1.0000 20 chr2:68444003-68444023 1.0000 20 chr4:132347714-132347734 1.0000 20 chr12:131486942-13148696 1.0000 20 chr5:141372095-141372115 1.0000 20 chr8:107282303-107282323 1.0000 20 chr2:25517784-25517804 1.0000 20 chr12:65582964-65582984 1.0000 20 chr1:27980350-27980370 1.0000 20 chr6:79960124-79960144 1.0000 20 chr2:225816632-225816652 1.0000 20 chr12:94587204-94587224 1.0000 20 chr7:73427395-73427415 1.0000 20 chr2:202279030-202279050 1.0000 20 chr20:58406547-58406567 1.0000 20 chr1:194799690-194799710 1.0000 20 chr4:7784649-7784669 1.0000 20 chr7:117421056-117421076 1.0000 20 chr4:186401034-186401054 1.0000 20 chr2:43135855-43135875 1.0000 20 chr5:73856255-73856275 1.0000 20 chr10:75768120-75768140 1.0000 20 chr17:5322367-5322387 1.0000 20 chr1:184618725-184618745 1.0000 20 chr1:156460281-156460301 1.0000 20 chr6:119468666-119468686 1.0000 20 chr20:47357435-47357455 1.0000 20 chr1:85065296-85065316 1.0000 20 chr13:46674498-46674518 1.0000 20 chr6:122797445-122797465 1.0000 20 chr17:43434846-43434866 1.0000 20 chr9:114798560-114798580 1.0000 20 chr1:27986313-27986333 1.0000 20 chr12:6277165-6277185 1.0000 20 chr6:126504248-126504268 1.0000 20 chr1:157532419-157532439 1.0000 20 chr7:3108417-3108437 1.0000 20 chr1:156251281-156251301 1.0000 20 chr1:221930718-221930738 1.0000 20 chr18:44154173-44154193 1.0000 20 chr9:93862603-93862623 1.0000 20 chr2:37856772-37856792 1.0000 20 chr1:161676424-161676444 1.0000 20 chr4:147190691-147190711 1.0000 20 chr2:179793092-179793112 1.0000 20 chr10:88172967-88172987 1.0000 20 chr6:7917393-7917413 1.0000 20 chr8:81524942-81524962 1.0000 20 chr8:35449770-35449790 1.0000 20 chr10:64220282-64220302 1.0000 20 chr3:195823389-195823409 1.0000 20 chr1:81903457-81903477 1.0000 20 chr4:83214637-83214657 1.0000 20 chr9:130678226-130678246 1.0000 20 chr14:95736707-95736727 1.0000 20 chrX:96489881-96489901 1.0000 20 chr7:86415105-86415125 1.0000 20 chr10:114306436-11430645 1.0000 20 chr12:2445633-2445653 1.0000 20 chr3:81838012-81838032 1.0000 20 chr2:29946662-29946682 1.0000 20 chr9:113570624-113570644 1.0000 20 chr17:42188634-42188654 1.0000 20 chr3:185599110-185599130 1.0000 20 chr8:102806023-102806043 1.0000 20 chr7:21978907-21978927 1.0000 20 chr1:15655792-15655812 1.0000 20 chr16:25030496-25030516 1.0000 20 chr2:38162460-38162480 1.0000 20 chr1:87617279-87617299 1.0000 20 chr5:39784013-39784033 1.0000 20 chr10:112506949-11250696 1.0000 20 chr6:154579384-154579404 1.0000 20 chr16:27312925-27312945 1.0000 20 chr6:87797990-87798010 1.0000 20 chr12:95482286-95482306 1.0000 20 chr6:22271448-22271468 1.0000 20 chr3:42531950-42531970 1.0000 20 chr3:17615083-17615103 1.0000 20 chr12:48206906-48206926 1.0000 20 chr19:10523151-10523171 1.0000 20 chr20:58327527-58327547 1.0000 20 chr5:111482310-111482330 1.0000 20 chr11:69152241-69152261 1.0000 20 chr8:132828232-132828252 1.0000 20 chrX:102820225-102820245 1.0000 20 chr11:128702168-12870218 1.0000 20 chr16:10896681-10896701 1.0000 20 chr22:46168702-46168722 1.0000 20 chr15:59529505-59529525 1.0000 20 chr5:61572988-61573008 1.0000 20 chr2:171017262-171017282 1.0000 20 chr22:24186794-24186814 1.0000 20 chr8:95973052-95973072 1.0000 20 chr2:42256009-42256029 1.0000 20 chr16:10885146-10885166 1.0000 20 chr17:2394517-2394537 1.0000 20 chr2:188943549-188943569 1.0000 20 chr6:108918992-108919012 1.0000 20 chr18:31296454-31296474 1.0000 20 chr18:11577456-11577476 1.0000 20 chr14:65788539-65788559 1.0000 20 chr12:20250684-20250704 1.0000 20 chr7:108263873-108263893 1.0000 20 chr5:67103523-67103543 1.0000 20 chr2:197369673-197369693 1.0000 20 chrX:20224314-20224334 1.0000 20 chr6:15359747-15359767 1.0000 20 chr8:38153609-38153629 1.0000 20 chr3:158073898-158073918 1.0000 20 chr22:34238157-34238177 1.0000 20 chr7:2934381-2934401 1.0000 20 chr2:38161836-38161856 1.0000 20 chr11:115802042-11580206 1.0000 20 chr10:45474293-45474313 1.0000 20 chr8:72171823-72171843 1.0000 20 chr1:108477324-108477344 1.0000 20 chr13:78293482-78293502 1.0000 20 chr2:180817537-180817557 1.0000 20 chr5:131856636-131856656 1.0000 20 chr1:28571494-28571514 1.0000 20 chr15:51520811-51520831 1.0000 20 chr1:110359202-110359222 1.0000 20 chr3:12685456-12685476 1.0000 20 chr16:81855315-81855335 1.0000 20 chr7:20105073-20105093 1.0000 20 chr14:20801611-20801631 1.0000 20 chr18:60825185-60825205 1.0000 20 chr5:80802920-80802940 1.0000 20 chr9:126084717-126084737 1.0000 20 chr2:48060782-48060802 1.0000 20 chr6:139922194-139922214 1.0000 20 chr9:112680819-112680839 1.0000 20 chr2:46720810-46720830 1.0000 20 chr1:179972610-179972630 1.0000 20 chr6:110090600-110090620 1.0000 20 chr2:16894475-16894495 1.0000 20 chr12:109058289-10905830 1.0000 20 chr11:78021677-78021697 1.0000 20 chr13:49554303-49554323 1.0000 20 chr21:19162219-19162239 1.0000 20 chr3:39296474-39296494 1.0000 20 chr6:138230060-138230080 1.0000 20 chr13:21723947-21723967 1.0000 20 chr6:159888862-159888882 1.0000 20 chr10:23702749-23702769 1.0000 20 chr5:123986018-123986038 1.0000 20 chr2:146351023-146351043 1.0000 20 chr1:57297731-57297751 1.0000 20 chr17:55500266-55500286 1.0000 20 chr6:36082997-36083017 1.0000 20 chr15:34394537-34394557 1.0000 20 chr6:15409176-15409196 1.0000 20 chr10:5946370-5946390 1.0000 20 chr4:48501874-48501894 1.0000 20 chr10:61846813-61846833 1.0000 20 chr2:109211556-109211576 1.0000 20 chr12:51874986-51875006 1.0000 20 chr2:20351234-20351254 1.0000 20 chr2:33756022-33756042 1.0000 20 chr16:17228649-17228669 1.0000 20 chr6:12066099-12066119 1.0000 20 chr13:30392334-30392354 1.0000 20 chr19:6458071-6458091 1.0000 20 chr1:184915371-184915391 1.0000 20 chr4:184659538-184659558 1.0000 20 chr17:57910629-57910649 1.0000 20 chr10:76926286-76926306 1.0000 20 chr1:246862534-246862554 1.0000 20 chr18:77220602-77220622 1.0000 20 chr20:40091258-40091278 1.0000 20 chr11:68934186-68934206 1.0000 20 chr14:42898356-42898376 1.0000 20 chr2:25287307-25287327 1.0000 20 chr19:17791161-17791181 1.0000 20 chr5:107970851-107970871 1.0000 20 chr8:117721608-117721628 1.0000 20 chr3:186718019-186718039 1.0000 20 chr2:65833553-65833573 1.0000 20 chrX:120294949-120294969 1.0000 20 chr3:178387035-178387055 1.0000 20 chr6:135898492-135898512 1.0000 20 chr9:134553993-134554013 1.0000 20 chr3:167769470-167769490 1.0000 20 chr9:100629316-100629336 1.0000 20 chr3:52236867-52236887 1.0000 20 chr7:133756624-133756644 1.0000 20 chr6:144223460-144223480 1.0000 20 chr12:71786505-71786525 1.0000 20 chr3:178232058-178232078 1.0000 20 chr1:161885176-161885196 1.0000 20 chr2:111476126-111476146 1.0000 20 chr10:63805097-63805117 1.0000 20 chr6:24974966-24974986 1.0000 20 chr6:336895-336915 1.0000 20 chr6:164127190-164127210 1.0000 20 chr20:45181804-45181824 1.0000 20 chr2:153421529-153421549 1.0000 20 chr15:83474924-83474944 1.0000 20 chr22:20979720-20979740 1.0000 20 chr17:20937786-20937806 1.0000 20 chr7:86759306-86759326 1.0000 20 chr2:120110167-120110187 1.0000 20 chr9:93970506-93970526 1.0000 20 chr17:38021826-38021846 1.0000 20 chr1:14366723-14366743 1.0000 20 chr20:57483044-57483064 1.0000 20 chr5:107857224-107857244 1.0000 20 chr10:16627337-16627357 1.0000 20 chr6:14639575-14639595 1.0000 20 chr3:112183265-112183285 1.0000 20 chr5:61581371-61581391 1.0000 20 chr20:47158281-47158301 1.0000 20 chr15:57252474-57252494 1.0000 20 chr1:223317308-223317328 1.0000 20 chr6:143727962-143727982 1.0000 20 chr13:105627837-10562785 1.0000 20 chr5:146784016-146784036 1.0000 20 chr12:124938245-12493826 1.0000 20 chr3:17055261-17055281 1.0000 20 chr6:160399753-160399773 1.0000 20 chr2:37232518-37232538 1.0000 20 chr1:25876117-25876137 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_MEF2C/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/MEF2C.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.305 C 0.202 G 0.204 T 0.289 Background letter frequencies (from file dataset with add-one prior applied): A 0.305 C 0.202 G 0.204 T 0.289 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF WAAATAGC MEME-1 width = 8 sites = 25 llr = 199 E-value = 3.5e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif WAAATAGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 6aaa:a:3 pos.-specific C ::::::16 probability G 1:::::9: matrix T 3:::a::1 bits 2.3 2.1 1.8 * * 1.6 ***** Relative 1.4 ****** Entropy 1.2 ****** (11.5 bits) 0.9 ****** 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AAAATAGC consensus T A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAAATAGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr17:57910629-57910649 11 3.14e-05 GTCCGTTACT AAAATAGC TT chr8:38153609-38153629 11 3.14e-05 GTGATGGATT AAAATAGC AA chr17:5322367-5322387 12 3.14e-05 gacgaaacta aaaatagc a chr9:102130747-102130767 2 3.14e-05 A AAAATAGC CTTTGTCTAA chr17:48241409-48241429 10 3.14e-05 GTGGCTCCA AAAATAGC CAG chr18:56810869-56810889 1 3.14e-05 . aaaatagc ctctcttagc chr7:86759306-86759326 4 6.12e-05 CCA TAAATAGC GAAACCCAG chr1:87617279-87617299 4 6.12e-05 CCA TAAATAGC CACCTCGGG chr7:117421056-117421076 13 6.12e-05 AAAATAATTA TAAATAGC chr11:66185866-66185886 5 6.12e-05 GATA TAAATAGC TCCTCTCC chr19:6458071-6458091 1 8.22e-05 . GAAATAGC CTATGAGTCA chr22:20234880-20234900 2 8.22e-05 A GAAATAGC TCCAGGCGGG chr5:61581371-61581391 13 1.30e-04 CACCCTGCCT AAAATAGA chr6:36082997-36083017 12 1.30e-04 TTTGCAACTA AAAATAGA A chr6:22271448-22271468 4 1.30e-04 CCA AAAATAGA TGTGGTTTA chr4:147190691-147190711 7 1.30e-04 ACATCA AAAATAGA ATGAGA chr6:122797445-122797465 2 1.30e-04 A AAAATAGA TTAGGACACA chr5:39784013-39784033 5 1.75e-04 caca taaataga tttattag chr17:20937786-20937806 13 2.20e-04 cctcagtctg aaaatagt chr5:131856636-131856656 11 2.51e-04 caacaggcca gaaataga ag chr18:77220602-77220622 5 2.83e-04 GCCA AAAATACC TCGTGTTT chr10:112506949-11250696 2 2.83e-04 a aaaATACC CTCACTAAAA chr1:161885176-161885196 11 3.25e-04 aaaaaagctt taaatagt ac chr12:6277165-6277185 7 3.25e-04 cagcta taaatagt ccaaag chr9:126084717-126084737 5 4.64e-04 atta ttaatagc accccttt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAAATAGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:57910629-57910649 3.1e-05 10_[+1]_2 chr8:38153609-38153629 3.1e-05 10_[+1]_2 chr17:5322367-5322387 3.1e-05 11_[+1]_1 chr9:102130747-102130767 3.1e-05 1_[+1]_11 chr17:48241409-48241429 3.1e-05 9_[+1]_3 chr18:56810869-56810889 3.1e-05 [+1]_12 chr7:86759306-86759326 6.1e-05 3_[+1]_9 chr1:87617279-87617299 6.1e-05 3_[+1]_9 chr7:117421056-117421076 6.1e-05 12_[+1] chr11:66185866-66185886 6.1e-05 4_[+1]_8 chr19:6458071-6458091 8.2e-05 [+1]_12 chr22:20234880-20234900 8.2e-05 1_[+1]_11 chr5:61581371-61581391 0.00013 12_[+1] chr6:36082997-36083017 0.00013 11_[+1]_1 chr6:22271448-22271468 0.00013 3_[+1]_9 chr4:147190691-147190711 0.00013 6_[+1]_6 chr6:122797445-122797465 0.00013 1_[+1]_11 chr5:39784013-39784033 0.00017 4_[+1]_8 chr17:20937786-20937806 0.00022 12_[+1] chr5:131856636-131856656 0.00025 10_[+1]_2 chr18:77220602-77220622 0.00028 4_[+1]_8 chr10:112506949-11250696 0.00028 1_[+1]_11 chr1:161885176-161885196 0.00033 10_[+1]_2 chr12:6277165-6277185 0.00033 6_[+1]_6 chr9:126084717-126084737 0.00046 4_[+1]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAAATAGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WAAATAGC width=8 seqs=25 chr17:57910629-57910649 ( 11) AAAATAGC 1 chr8:38153609-38153629 ( 11) AAAATAGC 1 chr17:5322367-5322387 ( 12) AAAATAGC 1 chr9:102130747-102130767 ( 2) AAAATAGC 1 chr17:48241409-48241429 ( 10) AAAATAGC 1 chr18:56810869-56810889 ( 1) AAAATAGC 1 chr7:86759306-86759326 ( 4) TAAATAGC 1 chr1:87617279-87617299 ( 4) TAAATAGC 1 chr7:117421056-117421076 ( 13) TAAATAGC 1 chr11:66185866-66185886 ( 5) TAAATAGC 1 chr19:6458071-6458091 ( 1) GAAATAGC 1 chr22:20234880-20234900 ( 2) GAAATAGC 1 chr5:61581371-61581391 ( 13) AAAATAGA 1 chr6:36082997-36083017 ( 12) AAAATAGA 1 chr6:22271448-22271468 ( 4) AAAATAGA 1 chr4:147190691-147190711 ( 7) AAAATAGA 1 chr6:122797445-122797465 ( 2) AAAATAGA 1 chr5:39784013-39784033 ( 5) TAAATAGA 1 chr17:20937786-20937806 ( 13) AAAATAGT 1 chr5:131856636-131856656 ( 11) GAAATAGA 1 chr18:77220602-77220622 ( 5) AAAATACC 1 chr10:112506949-11250696 ( 2) AAAATACC 1 chr1:161885176-161885196 ( 11) TAAATAGT 1 chr12:6277165-6277185 ( 7) TAAATAGT 1 chr9:126084717-126084737 ( 5) TTAATAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAAATAGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.15019 E= 3.5e-010 88 -1129 -76 15 165 -1129 -1129 -285 171 -1129 -1129 -1129 171 -1129 -1129 -1129 -1129 -1129 -1129 179 171 -1129 -1129 -1129 -1129 -134 217 -1129 -12 157 -1129 -127 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAAATAGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 3.5e-010 0.560000 0.000000 0.120000 0.320000 0.960000 0.000000 0.000000 0.040000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.080000 0.920000 0.000000 0.280000 0.600000 0.000000 0.120000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAAATAGC MEME-1 regular expression -------------------------------------------------------------------------------- [AT]AAATAG[CA] -------------------------------------------------------------------------------- Time 1.89 secs. ******************************************************************************** ******************************************************************************** MOTIF RDCTATTT MEME-2 width = 8 sites = 21 llr = 155 E-value = 1.5e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif RDCTATTT MEME-2 Description -------------------------------------------------------------------------------- Simplified A 42::9::: pos.-specific C :1a::::: probability G 44::1::: matrix T 12:a:aaa bits 2.3 * 2.1 * 1.8 ** * 1.6 ** *** Relative 1.4 ** *** Entropy 1.2 ****** (10.7 bits) 0.9 ****** 0.7 ****** 0.5 * ****** 0.2 ******** 0.0 -------- Multilevel AGCTATTT consensus GA sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RDCTATTT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:42531950-42531970 13 1.79e-05 GCATAGCTGA GGCTATTT chr10:64467777-64467797 6 1.79e-05 TGTAA GGCTATTT TCACCCT chr1:28571494-28571514 13 4.46e-05 TGCTTATCTG AGCTATTT chr6:108918992-108919012 2 4.46e-05 G AGCTATTT CATGTTTCCT chr8:72171823-72171843 4 7.00e-05 GTA GTCTATTT TTAGTGGCA chr2:68444003-68444023 12 7.00e-05 TAATAAAGAA GTCTATTT A chr5:107857224-107857244 5 1.14e-04 ggtg gcctattt tggtttcc chr17:43434846-43434866 3 1.14e-04 tc gcctattt taggacttgc chrX:62981709-62981729 6 1.14e-04 TTTGG GCCTATTT CACATTT chr22:34238157-34238177 2 1.52e-04 G ATCTATTT TTGTCTCTAC chr8:81524942-81524962 1 1.52e-04 . ATCTATTT TTAGCACAAG chr12:65582964-65582984 4 1.52e-04 ctc atctattt ttggtccat chr5:111482310-111482330 3 1.92e-04 GC AACTATTT ATTTCCAGAT chr10:88172967-88172987 3 1.92e-04 TT AACTATTT CTGTCTGGAC chr2:43135855-43135875 11 2.56e-04 TTATGGTTTT GGCTGTTT AT chr6:164127190-164127210 2 3.48e-04 T TACTATTT TGTGCTCTGA chr6:154579384-154579404 13 3.48e-04 TCATggtagg tactattt chr16:17441327-17441347 8 4.33e-04 AGCATGA GACTGTTT AGAAT chr3:112183265-112183285 3 5.51e-04 GC AGCTATTC TAACATGTCT chr2:42256009-42256029 6 5.51e-04 GGATT AGctatct caacata chr2:25287307-25287327 1 1.14e-03 . tgcttttt ataggctgcc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RDCTATTT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:42531950-42531970 1.8e-05 12_[+2] chr10:64467777-64467797 1.8e-05 5_[+2]_7 chr1:28571494-28571514 4.5e-05 12_[+2] chr6:108918992-108919012 4.5e-05 1_[+2]_11 chr8:72171823-72171843 7e-05 3_[+2]_9 chr2:68444003-68444023 7e-05 11_[+2]_1 chr5:107857224-107857244 0.00011 4_[+2]_8 chr17:43434846-43434866 0.00011 2_[+2]_10 chrX:62981709-62981729 0.00011 5_[+2]_7 chr22:34238157-34238177 0.00015 1_[+2]_11 chr8:81524942-81524962 0.00015 [+2]_12 chr12:65582964-65582984 0.00015 3_[+2]_9 chr5:111482310-111482330 0.00019 2_[+2]_10 chr10:88172967-88172987 0.00019 2_[+2]_10 chr2:43135855-43135875 0.00026 10_[+2]_2 chr6:164127190-164127210 0.00035 1_[+2]_11 chr6:154579384-154579404 0.00035 12_[+2] chr16:17441327-17441347 0.00043 7_[+2]_5 chr3:112183265-112183285 0.00055 2_[+2]_10 chr2:42256009-42256029 0.00055 5_[+2]_7 chr2:25287307-25287327 0.0011 [+2]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RDCTATTT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RDCTATTT width=8 seqs=21 chr3:42531950-42531970 ( 13) GGCTATTT 1 chr10:64467777-64467797 ( 6) GGCTATTT 1 chr1:28571494-28571514 ( 13) AGCTATTT 1 chr6:108918992-108919012 ( 2) AGCTATTT 1 chr8:72171823-72171843 ( 4) GTCTATTT 1 chr2:68444003-68444023 ( 12) GTCTATTT 1 chr5:107857224-107857244 ( 5) GCCTATTT 1 chr17:43434846-43434866 ( 3) GCCTATTT 1 chrX:62981709-62981729 ( 6) GCCTATTT 1 chr22:34238157-34238177 ( 2) ATCTATTT 1 chr8:81524942-81524962 ( 1) ATCTATTT 1 chr12:65582964-65582984 ( 4) ATCTATTT 1 chr5:111482310-111482330 ( 3) AACTATTT 1 chr10:88172967-88172987 ( 3) AACTATTT 1 chr2:43135855-43135875 ( 11) GGCTGTTT 1 chr6:164127190-164127210 ( 2) TACTATTT 1 chr6:154579384-154579404 ( 13) TACTATTT 1 chr16:17441327-17441347 ( 8) GACTGTTT 1 chr3:112183265-112183285 ( 3) AGCTATTC 1 chr2:42256009-42256029 ( 6) AGCTATCT 1 chr2:25287307-25287327 ( 1) TGCTTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RDCTATTT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 6.75569 E= 1.5e+000 49 -1104 107 -101 -36 -50 90 -28 -1104 230 -1104 -1104 -1104 -1104 -1104 179 149 -1104 -110 -260 -1104 -1104 -1104 179 -1104 -209 -1104 172 -1104 -209 -1104 172 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RDCTATTT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 1.5e+000 0.428571 0.000000 0.428571 0.142857 0.238095 0.142857 0.380952 0.238095 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.857143 0.000000 0.095238 0.047619 0.000000 0.000000 0.000000 1.000000 0.000000 0.047619 0.000000 0.952381 0.000000 0.047619 0.000000 0.952381 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RDCTATTT MEME-2 regular expression -------------------------------------------------------------------------------- [AG][GAT]CTATTT -------------------------------------------------------------------------------- Time 2.89 secs. ******************************************************************************** ******************************************************************************** MOTIF RMCAGGGC MEME-3 width = 8 sites = 11 llr = 94 E-value = 2.4e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif RMCAGGGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A 4318:::: pos.-specific C 159:::39 probability G 52:2aa71 matrix T :::::::: bits 2.3 ** 2.1 ** 1.8 * ** * 1.6 * ** * Relative 1.4 * **** Entropy 1.2 ****** (12.3 bits) 0.9 ****** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCCAGGGC consensus AA C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RMCAGGGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:160399753-160399773 12 4.35e-06 CTCCGTGTTA GCCAGGGC A chr20:57483044-57483064 13 4.35e-06 CATGCTGGAG GCCAGGGC chr20:58327527-58327547 10 1.09e-05 GGCCCTGCC ACCAGGGC TAT chr1:25876117-25876137 13 6.06e-05 CTAGGACCGG AACAGGGC chr6:15359747-15359767 3 7.43e-05 TG GGCAGGCC CTAGGCAGTG chr7:73427395-73427415 10 7.43e-05 CCAGAGCCC GCCGGGCC CAA chr12:52430789-52430809 4 8.17e-05 CGG GGCGGGGC GCTCGCGGC chr1:221930718-221930738 7 9.69e-05 TTTGGC GCAAGGGC CACAGC chr5:131856636-131856656 2 1.17e-04 c aacaggcc agaaatagaa chr1:15655792-15655812 11 1.31e-04 TATTTCTGGC CACAGGGC CT chr1:57297731-57297751 6 1.49e-04 TGACC ACCAGGGG GAGCGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RMCAGGGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:160399753-160399773 4.4e-06 11_[+3]_1 chr20:57483044-57483064 4.4e-06 12_[+3] chr20:58327527-58327547 1.1e-05 9_[+3]_3 chr1:25876117-25876137 6.1e-05 12_[+3] chr6:15359747-15359767 7.4e-05 2_[+3]_10 chr7:73427395-73427415 7.4e-05 9_[+3]_3 chr12:52430789-52430809 8.2e-05 3_[+3]_9 chr1:221930718-221930738 9.7e-05 6_[+3]_6 chr5:131856636-131856656 0.00012 1_[+3]_11 chr1:15655792-15655812 0.00013 10_[+3]_2 chr1:57297731-57297751 0.00015 5_[+3]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RMCAGGGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RMCAGGGC width=8 seqs=11 chr6:160399753-160399773 ( 12) GCCAGGGC 1 chr20:57483044-57483064 ( 13) GCCAGGGC 1 chr20:58327527-58327547 ( 10) ACCAGGGC 1 chr1:25876117-25876137 ( 13) AACAGGGC 1 chr6:15359747-15359767 ( 3) GGCAGGCC 1 chr7:73427395-73427415 ( 10) GCCGGGCC 1 chr12:52430789-52430809 ( 4) GGCGGGGC 1 chr1:221930718-221930738 ( 7) GCAAGGGC 1 chr5:131856636-131856656 ( 2) AACAGGCC 1 chr1:15655792-15655812 ( 11) CACAGGGC 1 chr1:57297731-57297751 ( 6) ACCAGGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RMCAGGGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.73854 E= 2.4e+002 25 -115 142 -1010 -16 143 -16 -1010 -174 217 -1010 -1010 142 -1010 -16 -1010 -1010 -1010 229 -1010 -1010 -1010 229 -1010 -1010 43 183 -1010 -1010 217 -116 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RMCAGGGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 2.4e+002 0.363636 0.090909 0.545455 0.000000 0.272727 0.545455 0.181818 0.000000 0.090909 0.909091 0.000000 0.000000 0.818182 0.000000 0.181818 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.272727 0.727273 0.000000 0.000000 0.909091 0.090909 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RMCAGGGC MEME-3 regular expression -------------------------------------------------------------------------------- [GA][CA]CAGG[GC]C -------------------------------------------------------------------------------- Time 6.21 secs. ******************************************************************************** ******************************************************************************** MOTIF MTGAGTCA MEME-4 width = 8 sites = 16 llr = 124 E-value = 6.1e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif MTGAGTCA MEME-4 Description -------------------------------------------------------------------------------- Simplified A 41:9::1a pos.-specific C 5:::319: probability G ::8:7::: matrix T 1921:9:: bits 2.3 2.1 1.8 1.6 * ** Relative 1.4 ******* Entropy 1.2 ******* (11.2 bits) 0.9 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTGAGTCA consensus A C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTGAGTCA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:85065296-85065316 5 1.32e-05 CTGC CTGAGTCA GAAATTTA chr19:6458071-6458091 11 3.31e-05 GAAATAGCCT ATGAGTCA TC chr6:132726516-132726536 1 3.31e-05 . atgagtca gtggcagaaa chr2:225816632-225816652 2 4.62e-05 c ctgactca aggacccttt chr7:28663136-28663156 11 4.62e-05 ACTCCTTGAT CTGACTCA CT chrX:120294949-120294969 7 6.59e-05 TCACCT ATGACTCA GACTTG chr1:161676424-161676444 13 9.38e-05 ACTGAGCAGA CTTAGTCA chr2:38162460-38162480 5 1.08e-04 TTTC ATGAGCCA AAAATATA chr2:37856772-37856792 5 1.08e-04 ccag atgagcca ctgctccc chr13:49554303-49554323 13 1.84e-04 CGAAAAGCCT TTGAGTCA chr3:167769470-167769490 8 2.02e-04 ATACTAT CTTACTCA GAACT chr3:17615083-17615103 1 2.02e-04 . cttactca atttgcaaac chr12:51874986-51875006 4 2.15e-04 GAC CTGTGTCA TTTTTAGTG chr10:75768120-75768140 4 2.29e-04 TTT CAGAGTCA TTTCAGCTA chr4:83214637-83214657 4 2.73e-04 acc atgagtaa cagaaacca chr2:55523710-55523730 6 2.73e-04 ACTTC ATGAGTAA TAACATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTGAGTCA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:85065296-85065316 1.3e-05 4_[+4]_8 chr19:6458071-6458091 3.3e-05 10_[+4]_2 chr6:132726516-132726536 3.3e-05 [+4]_12 chr2:225816632-225816652 4.6e-05 1_[+4]_11 chr7:28663136-28663156 4.6e-05 10_[+4]_2 chrX:120294949-120294969 6.6e-05 6_[+4]_6 chr1:161676424-161676444 9.4e-05 12_[+4] chr2:38162460-38162480 0.00011 4_[+4]_8 chr2:37856772-37856792 0.00011 4_[+4]_8 chr13:49554303-49554323 0.00018 12_[+4] chr3:167769470-167769490 0.0002 7_[+4]_5 chr3:17615083-17615103 0.0002 [+4]_12 chr12:51874986-51875006 0.00021 3_[+4]_9 chr10:75768120-75768140 0.00023 3_[+4]_9 chr4:83214637-83214657 0.00027 3_[+4]_9 chr2:55523710-55523730 0.00027 5_[+4]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTGAGTCA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MTGAGTCA width=8 seqs=16 chr1:85065296-85065316 ( 5) CTGAGTCA 1 chr19:6458071-6458091 ( 11) ATGAGTCA 1 chr6:132726516-132726536 ( 1) ATGAGTCA 1 chr2:225816632-225816652 ( 2) CTGACTCA 1 chr7:28663136-28663156 ( 11) CTGACTCA 1 chrX:120294949-120294969 ( 7) ATGACTCA 1 chr1:161676424-161676444 ( 13) CTTAGTCA 1 chr2:38162460-38162480 ( 5) ATGAGCCA 1 chr2:37856772-37856792 ( 5) ATGAGCCA 1 chr13:49554303-49554323 ( 13) TTGAGTCA 1 chr3:167769470-167769490 ( 8) CTTACTCA 1 chr3:17615083-17615103 ( 1) CTTACTCA 1 chr12:51874986-51875006 ( 4) CTGTGTCA 1 chr10:75768120-75768140 ( 4) CAGAGTCA 1 chr4:83214637-83214657 ( 4) ATGAGTAA 1 chr2:55523710-55523730 ( 6) ATGAGTAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTGAGTCA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.6591 E= 6.1e+002 52 130 -1064 -220 -228 -1064 -1064 170 -1064 -1064 199 -62 162 -1064 -1064 -220 -1064 63 175 -1064 -1064 -69 -1064 160 -129 211 -1064 -1064 171 -1064 -1064 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTGAGTCA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 6.1e+002 0.437500 0.500000 0.000000 0.062500 0.062500 0.000000 0.000000 0.937500 0.000000 0.000000 0.812500 0.187500 0.937500 0.000000 0.000000 0.062500 0.000000 0.312500 0.687500 0.000000 0.000000 0.125000 0.000000 0.875000 0.125000 0.875000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTGAGTCA MEME-4 regular expression -------------------------------------------------------------------------------- [CA]TGA[GC]TCA -------------------------------------------------------------------------------- Time 9.28 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGCYCCC MEME-5 width = 8 sites = 2 llr = 23 E-value = 2.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGCYCCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a::a5aaa probability G ::a::::: matrix T :a::5::: bits 2.3 * ** *** 2.1 * ** *** 1.8 **** *** 1.6 **** *** Relative 1.4 **** *** Entropy 1.2 ******** (16.7 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTGCCCCC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCYCCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:79960124-79960144 12 4.01e-06 aggggtgata ctgccccc a chr2:37856772-37856792 13 9.74e-06 agatgagcca ctgctccc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCYCCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:79960124-79960144 4e-06 11_[+5]_1 chr2:37856772-37856792 9.7e-06 12_[+5] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCYCCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGCYCCC width=8 seqs=2 chr6:79960124-79960144 ( 12) CTGCCCCC 1 chr2:37856772-37856792 ( 13) CTGCTCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCYCCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.6653 E= 2.5e+003 -765 230 -765 -765 -765 -765 -765 179 -765 -765 229 -765 -765 230 -765 -765 -765 130 -765 79 -765 230 -765 -765 -765 230 -765 -765 -765 230 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCYCCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.5e+003 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCYCCC MEME-5 regular expression -------------------------------------------------------------------------------- CTGC[CT]CCC -------------------------------------------------------------------------------- Time 11.86 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:62981709-62981729 4.67e-02 20 chr10:64467777-64467797 3.28e-03 5_[+2(1.79e-05)]_7 chr11:66185866-66185886 8.19e-03 4_[+1(6.12e-05)]_8 chr7:28663136-28663156 2.14e-02 10_[+4(4.62e-05)]_2 chr4:47566553-47566573 4.95e-01 20 chr18:56810869-56810889 5.06e-03 [+1(3.14e-05)]_12 chr6:24933367-24933387 6.54e-01 20 chr7:18535255-18535275 3.11e-01 20 chr17:38754294-38754314 7.66e-01 20 chr3:35634235-35634255 8.92e-01 20 chr17:48241409-48241429 1.71e-03 9_[+1(3.14e-05)]_3 chr6:132726516-132726536 3.72e-02 [+4(3.31e-05)]_12 chr18:9354445-9354465 8.41e-01 20 chr22:20234880-20234900 5.95e-03 1_[+1(8.22e-05)]_11 chr10:100234568-10023458 2.22e-01 20 chr22:43396611-43396631 2.94e-01 20 chr16:17441327-17441347 1.22e-01 20 chr1:53712106-53712126 2.94e-01 20 chr10:9373703-9373723 2.47e-02 20 chr12:52430789-52430809 7.39e-02 3_[+3(8.17e-05)]_9 chr8:56841718-56841738 7.75e-01 20 chr2:225835226-225835246 2.91e-01 20 chr10:3668683-3668703 5.23e-01 20 chr21:33508426-33508446 9.55e-01 20 chr2:55523710-55523730 1.04e-01 20 chr5:148185754-148185774 9.64e-01 20 chr7:74064492-74064512 5.39e-01 20 chr9:102130747-102130767 2.02e-03 1_[+1(3.14e-05)]_11 chr2:68444003-68444023 2.22e-02 11_[+2(7.00e-05)]_1 chr4:132347714-132347734 8.47e-02 20 chr12:131486942-13148696 4.09e-01 20 chr5:141372095-141372115 4.75e-01 20 chr8:107282303-107282323 6.97e-01 20 chr2:25517784-25517804 6.35e-01 20 chr12:65582964-65582984 9.60e-02 20 chr1:27980350-27980370 9.27e-01 20 chr6:79960124-79960144 2.09e-03 11_[+5(4.01e-06)]_1 chr2:225816632-225816652 5.93e-03 1_[+4(4.62e-05)]_11 chr12:94587204-94587224 2.39e-01 20 chr7:73427395-73427415 7.42e-03 9_[+3(7.43e-05)]_3 chr2:202279030-202279050 2.49e-02 20 chr20:58406547-58406567 8.25e-02 20 chr1:194799690-194799710 2.57e-01 20 chr4:7784649-7784669 6.93e-01 20 chr7:117421056-117421076 6.11e-02 12_[+1(6.12e-05)] chr4:186401034-186401054 4.41e-02 20 chr2:43135855-43135875 2.37e-01 20 chr5:73856255-73856275 7.76e-01 20 chr10:75768120-75768140 1.09e-01 20 chr17:5322367-5322387 6.07e-02 11_[+1(3.14e-05)]_1 chr1:184618725-184618745 3.41e-01 20 chr1:156460281-156460301 8.58e-02 20 chr6:119468666-119468686 3.94e-01 20 chr20:47357435-47357455 4.36e-01 20 chr1:85065296-85065316 5.22e-03 4_[+4(1.32e-05)]_8 chr13:46674498-46674518 6.73e-01 20 chr6:122797445-122797465 1.06e-01 20 chr17:43434846-43434866 1.53e-01 20 chr9:114798560-114798580 8.32e-01 20 chr1:27986313-27986333 4.12e-01 20 chr12:6277165-6277185 2.83e-02 20 chr6:126504248-126504268 2.20e-01 20 chr1:157532419-157532439 4.67e-01 20 chr7:3108417-3108437 7.58e-01 20 chr1:156251281-156251301 4.20e-01 20 chr1:221930718-221930738 4.23e-02 6_[+3(9.69e-05)]_6 chr18:44154173-44154193 1.50e-01 20 chr9:93862603-93862623 1.61e-01 20 chr2:37856772-37856792 8.70e-05 12_[+5(9.74e-06)] chr1:161676424-161676444 2.18e-02 12_[+4(9.38e-05)] chr4:147190691-147190711 1.57e-01 20 chr2:179793092-179793112 9.58e-01 20 chr10:88172967-88172987 8.96e-02 20 chr6:7917393-7917413 5.60e-01 20 chr8:81524942-81524962 4.67e-02 20 chr8:35449770-35449790 8.62e-01 20 chr10:64220282-64220302 7.24e-01 20 chr3:195823389-195823409 8.67e-01 20 chr1:81903457-81903477 7.61e-01 20 chr4:83214637-83214657 3.27e-02 20 chr9:130678226-130678246 3.44e-01 20 chr14:95736707-95736727 4.36e-01 20 chrX:96489881-96489901 8.32e-01 20 chr7:86415105-86415125 3.56e-01 20 chr10:114306436-11430645 1.08e-01 20 chr12:2445633-2445653 6.81e-01 20 chr3:81838012-81838032 2.26e-01 20 chr2:29946662-29946682 9.36e-01 20 chr9:113570624-113570644 7.83e-02 20 chr17:42188634-42188654 2.66e-01 20 chr3:185599110-185599130 4.03e-01 20 chr8:102806023-102806043 4.26e-01 20 chr7:21978907-21978927 1.07e-01 20 chr1:15655792-15655812 1.04e-02 20 chr16:25030496-25030516 7.66e-01 20 chr2:38162460-38162480 1.20e-02 20 chr1:87617279-87617299 9.12e-04 3_[+1(6.12e-05)]_9 chr5:39784013-39784033 1.56e-01 20 chr10:112506949-11250696 2.61e-02 20 chr6:154579384-154579404 2.20e-01 20 chr16:27312925-27312945 4.21e-01 20 chr6:87797990-87798010 6.34e-01 20 chr12:95482286-95482306 3.57e-01 20 chr6:22271448-22271468 1.38e-01 20 chr3:42531950-42531970 2.94e-03 12_[+2(1.79e-05)] chr3:17615083-17615103 8.16e-02 20 chr12:48206906-48206926 4.46e-01 20 chr19:10523151-10523171 9.37e-01 20 chr20:58327527-58327547 4.90e-04 9_[+3(1.09e-05)]_3 chr5:111482310-111482330 1.27e-01 20 chr11:69152241-69152261 5.77e-01 20 chr8:132828232-132828252 6.54e-01 20 chrX:102820225-102820245 4.93e-01 20 chr11:128702168-12870218 8.12e-01 20 chr16:10896681-10896701 6.63e-01 20 chr22:46168702-46168722 3.11e-01 20 chr15:59529505-59529525 8.58e-01 20 chr5:61572988-61573008 9.74e-01 20 chr2:171017262-171017282 2.85e-01 20 chr22:24186794-24186814 1.90e-01 20 chr8:95973052-95973072 4.55e-01 20 chr2:42256009-42256029 5.74e-02 20 chr16:10885146-10885166 9.42e-02 20 chr17:2394517-2394537 5.72e-01 20 chr2:188943549-188943569 2.54e-01 20 chr6:108918992-108919012 4.05e-02 1_[+2(4.46e-05)]_11 chr18:31296454-31296474 3.52e-01 20 chr18:11577456-11577476 4.49e-01 20 chr14:65788539-65788559 3.54e-01 20 chr12:20250684-20250704 5.29e-01 20 chr7:108263873-108263893 5.13e-01 20 chr5:67103523-67103543 5.61e-01 20 chr2:197369673-197369693 8.24e-02 20 chrX:20224314-20224334 1.95e-01 20 chr6:15359747-15359767 2.48e-02 2_[+3(7.43e-05)]_10 chr8:38153609-38153629 9.15e-03 10_[+1(3.14e-05)]_2 chr3:158073898-158073918 4.74e-01 20 chr22:34238157-34238177 9.10e-02 20 chr7:2934381-2934401 6.16e-01 20 chr2:38161836-38161856 6.79e-01 20 chr11:115802042-11580206 2.69e-02 20 chr10:45474293-45474313 3.52e-01 20 chr8:72171823-72171843 5.52e-02 3_[+2(7.00e-05)]_9 chr1:108477324-108477344 6.14e-01 20 chr13:78293482-78293502 3.15e-01 20 chr2:180817537-180817557 5.64e-01 20 chr5:131856636-131856656 3.32e-03 20 chr1:28571494-28571514 1.03e-02 12_[+2(4.46e-05)] chr15:51520811-51520831 7.26e-01 20 chr1:110359202-110359222 2.13e-02 20 chr3:12685456-12685476 9.27e-01 20 chr16:81855315-81855335 9.31e-02 20 chr7:20105073-20105093 1.37e-01 20 chr14:20801611-20801631 7.40e-01 20 chr18:60825185-60825205 3.82e-01 20 chr5:80802920-80802940 8.02e-01 20 chr9:126084717-126084737 8.08e-03 20 chr2:48060782-48060802 5.83e-01 20 chr6:139922194-139922214 3.93e-01 20 chr9:112680819-112680839 8.19e-01 20 chr2:46720810-46720830 7.32e-01 20 chr1:179972610-179972630 8.83e-01 20 chr6:110090600-110090620 9.44e-01 20 chr2:16894475-16894495 9.32e-01 20 chr12:109058289-10905830 4.40e-01 20 chr11:78021677-78021697 2.39e-01 20 chr13:49554303-49554323 3.40e-02 20 chr21:19162219-19162239 4.39e-01 20 chr3:39296474-39296494 4.90e-01 20 chr6:138230060-138230080 3.22e-01 20 chr13:21723947-21723967 5.84e-01 20 chr6:159888862-159888882 8.46e-01 20 chr10:23702749-23702769 5.97e-02 20 chr5:123986018-123986038 9.52e-01 20 chr2:146351023-146351043 7.69e-01 20 chr1:57297731-57297751 1.68e-01 20 chr17:55500266-55500286 3.30e-01 20 chr6:36082997-36083017 7.57e-02 20 chr15:34394537-34394557 6.89e-01 20 chr6:15409176-15409196 3.86e-01 20 chr10:5946370-5946390 2.05e-01 20 chr4:48501874-48501894 8.68e-01 20 chr10:61846813-61846833 9.89e-01 20 chr2:109211556-109211576 9.17e-01 20 chr12:51874986-51875006 3.62e-02 20 chr2:20351234-20351254 1.88e-01 20 chr2:33756022-33756042 4.24e-01 20 chr16:17228649-17228669 4.68e-01 20 chr6:12066099-12066119 4.07e-01 20 chr13:30392334-30392354 9.14e-01 20 chr19:6458071-6458091 2.84e-04 [+1(8.22e-05)]_2_[+4(3.31e-05)]_2 chr1:184915371-184915391 6.44e-01 20 chr4:184659538-184659558 7.05e-01 20 chr17:57910629-57910649 1.16e-02 10_[+1(3.14e-05)]_2 chr10:76926286-76926306 7.53e-01 20 chr1:246862534-246862554 6.98e-01 20 chr18:77220602-77220622 8.25e-02 20 chr20:40091258-40091278 9.89e-01 20 chr11:68934186-68934206 9.70e-01 20 chr14:42898356-42898376 8.86e-01 20 chr2:25287307-25287327 1.70e-01 20 chr19:17791161-17791181 7.73e-01 20 chr5:107970851-107970871 9.20e-01 20 chr8:117721608-117721628 2.85e-01 20 chr3:186718019-186718039 7.19e-01 20 chr2:65833553-65833573 4.89e-02 20 chrX:120294949-120294969 7.03e-02 6_[+4(6.59e-05)]_6 chr3:178387035-178387055 3.98e-02 20 chr6:135898492-135898512 3.32e-01 20 chr9:134553993-134554013 8.03e-01 20 chr3:167769470-167769490 1.11e-02 20 chr9:100629316-100629336 9.41e-01 20 chr3:52236867-52236887 7.29e-01 20 chr7:133756624-133756644 5.21e-01 20 chr6:144223460-144223480 3.52e-01 20 chr12:71786505-71786525 8.48e-01 20 chr3:178232058-178232078 2.37e-01 20 chr1:161885176-161885196 1.05e-01 20 chr2:111476126-111476146 2.21e-01 20 chr10:63805097-63805117 6.02e-01 20 chr6:24974966-24974986 1.81e-01 20 chr6:336895-336915 3.86e-01 20 chr6:164127190-164127210 1.45e-01 20 chr20:45181804-45181824 4.65e-02 20 chr2:153421529-153421549 7.29e-01 20 chr15:83474924-83474944 1.76e-01 20 chr22:20979720-20979740 7.82e-01 20 chr17:20937786-20937806 1.06e-01 20 chr7:86759306-86759326 2.75e-02 3_[+1(6.12e-05)]_9 chr2:120110167-120110187 1.50e-01 20 chr9:93970506-93970526 3.61e-01 20 chr17:38021826-38021846 8.35e-01 20 chr1:14366723-14366743 6.64e-01 20 chr20:57483044-57483064 1.14e-02 12_[+3(4.35e-06)] chr5:107857224-107857244 1.65e-01 20 chr10:16627337-16627357 4.66e-01 20 chr6:14639575-14639595 3.21e-01 20 chr3:112183265-112183285 5.36e-02 20 chr5:61581371-61581391 6.74e-03 20 chr20:47158281-47158301 2.87e-01 20 chr15:57252474-57252494 9.73e-01 20 chr1:223317308-223317328 2.91e-01 20 chr6:143727962-143727982 8.51e-01 20 chr13:105627837-10562785 3.72e-02 20 chr5:146784016-146784036 3.90e-02 20 chr12:124938245-12493826 8.70e-01 20 chr3:17055261-17055281 2.42e-01 20 chr6:160399753-160399773 3.18e-03 11_[+3(4.35e-06)]_1 chr2:37232518-37232538 6.81e-01 20 chr1:25876117-25876137 7.87e-02 12_[+3(6.06e-05)] -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n09.farnam.hpc.yale.internal ********************************************************************************