******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/MEF2A.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:62981714-62981734 1.0000 20 chr10:64467791-64467811 1.0000 20 chr7:28663145-28663165 1.0000 20 chr3:35634246-35634266 1.0000 20 chr13:42659091-42659111 1.0000 20 chr18:56810858-56810878 1.0000 20 chr1:184618738-184618758 1.0000 20 chr8:81524959-81524979 1.0000 20 chr4:47566530-47566550 1.0000 20 chr2:68444015-68444035 1.0000 20 chr9:100629309-100629329 1.0000 20 chr1:53712108-53712128 1.0000 20 chr2:225816648-225816668 1.0000 20 chr6:132726509-132726529 1.0000 20 chr2:33756049-33756069 1.0000 20 chr6:119468683-119468703 1.0000 20 chr7:18535257-18535277 1.0000 20 chr5:148185762-148185782 1.0000 20 chr7:74064484-74064504 1.0000 20 chr7:73427392-73427412 1.0000 20 chr1:194799690-194799710 1.0000 20 chr2:43135878-43135898 1.0000 20 chr2:180817543-180817563 1.0000 20 chr18:9354462-9354482 1.0000 20 chr18:44154184-44154204 1.0000 20 chr6:24933353-24933373 1.0000 20 chr2:202279035-202279055 1.0000 20 chr10:100234571-10023459 1.0000 20 chr21:33508438-33508458 1.0000 20 chr8:56841701-56841721 1.0000 20 chr16:17441338-17441358 1.0000 20 chr5:131856616-131856636 1.0000 20 chr22:20234872-20234892 1.0000 20 chr7:117421049-117421069 1.0000 20 chr1:85065296-85065316 1.0000 20 chr4:147190696-147190716 1.0000 20 chr10:75768105-75768125 1.0000 20 chr6:110090613-110090633 1.0000 20 chr4:132347695-132347715 1.0000 20 chr5:73874632-73874652 1.0000 20 chr2:42256014-42256034 1.0000 20 chr12:95482267-95482287 1.0000 20 chr1:79926662-79926682 1.0000 20 chr12:65582989-65583009 1.0000 20 chr16:10896665-10896685 1.0000 20 chr9:93862629-93862649 1.0000 20 chr3:178232065-178232085 1.0000 20 chr7:86415103-86415123 1.0000 20 chr2:197369704-197369724 1.0000 20 chr16:25030496-25030516 1.0000 20 chr7:20070845-20070865 1.0000 20 chr8:72171822-72171842 1.0000 20 chr9:102130740-102130760 1.0000 20 chr22:43396591-43396611 1.0000 20 chr4:30463053-30463073 1.0000 20 chr12:131486931-13148695 1.0000 20 chr13:78293479-78293499 1.0000 20 chr14:35837010-35837030 1.0000 20 chr19:10523136-10523156 1.0000 20 chr17:48241394-48241414 1.0000 20 chr14:35180559-35180579 1.0000 20 chr2:55523729-55523749 1.0000 20 chr6:139922214-139922234 1.0000 20 chr7:90561967-90561987 1.0000 20 chr2:20351244-20351264 1.0000 20 chr7:108263876-108263896 1.0000 20 chr13:42269184-42269204 1.0000 20 chr7:129590586-129590606 1.0000 20 chr10:61846802-61846822 1.0000 20 chr5:107970829-107970849 1.0000 20 chr8:107680258-107680278 1.0000 20 chr8:60969510-60969530 1.0000 20 chr10:114306437-11430645 1.0000 20 chr5:39784033-39784053 1.0000 20 chr11:66185862-66185882 1.0000 20 chr3:17615077-17615097 1.0000 20 chr10:76434813-76434833 1.0000 20 chr3:185599110-185599130 1.0000 20 chr17:38754320-38754340 1.0000 20 chr6:106973075-106973095 1.0000 20 chr6:87797995-87798015 1.0000 20 chr2:153421514-153421534 1.0000 20 chr22:34238150-34238170 1.0000 20 chr15:59529478-59529498 1.0000 20 chr10:9373685-9373705 1.0000 20 chr16:10885118-10885138 1.0000 20 chr4:83214637-83214657 1.0000 20 chr11:34373821-34373841 1.0000 20 chr4:77776232-77776252 1.0000 20 chr4:7784619-7784639 1.0000 20 chr12:6277166-6277186 1.0000 20 chr1:157532425-157532445 1.0000 20 chr1:14366692-14366712 1.0000 20 chr8:95973017-95973037 1.0000 20 chr8:17785507-17785527 1.0000 20 chr18:31296430-31296450 1.0000 20 chr1:221930736-221930756 1.0000 20 chr2:146351072-146351092 1.0000 20 chr19:15054528-15054548 1.0000 20 chr1:165723374-165723394 1.0000 20 chr7:22425132-22425152 1.0000 20 chr8:102806023-102806043 1.0000 20 chr1:179972610-179972630 1.0000 20 chr20:47357439-47357459 1.0000 20 chr8:117721613-117721633 1.0000 20 chr3:104233417-104233437 1.0000 20 chr1:161676428-161676448 1.0000 20 chr3:178387033-178387053 1.0000 20 chr13:46674537-46674557 1.0000 20 chr2:65833551-65833571 1.0000 20 chr13:45242323-45242343 1.0000 20 chr6:22271452-22271472 1.0000 20 chr2:38162469-38162489 1.0000 20 chr4:106555748-106555768 1.0000 20 chr10:63805099-63805119 1.0000 20 chr1:231093544-231093564 1.0000 20 chr12:115942256-11594227 1.0000 20 chr5:61572975-61572995 1.0000 20 chr10:64220307-64220327 1.0000 20 chr5:80802939-80802959 1.0000 20 chr5:73856273-73856293 1.0000 20 chr18:60825186-60825206 1.0000 20 chr2:46720819-46720839 1.0000 20 chr10:3668682-3668702 1.0000 20 chr3:81837999-81838019 1.0000 20 chr4:71547683-71547703 1.0000 20 chr13:91772106-91772126 1.0000 20 chr6:36400198-36400218 1.0000 20 chr4:186401037-186401057 1.0000 20 chrX:20224314-20224334 1.0000 20 chr5:131439478-131439498 1.0000 20 chr1:161885176-161885196 1.0000 20 chr17:2394538-2394558 1.0000 20 chr10:5946385-5946405 1.0000 20 chr1:110359207-110359227 1.0000 20 chr7:83965771-83965791 1.0000 20 chr17:1335191-1335211 1.0000 20 chr3:158073897-158073917 1.0000 20 chr1:212336097-212336117 1.0000 20 chr3:108012054-108012074 1.0000 20 chr1:161751944-161751964 1.0000 20 chr10:88172984-88173004 1.0000 20 chr16:11676216-11676236 1.0000 20 chr22:46168702-46168722 1.0000 20 chr11:78021678-78021698 1.0000 20 chr8:132828260-132828280 1.0000 20 chr2:178034738-178034758 1.0000 20 chr16:81855299-81855319 1.0000 20 chr12:109058246-10905826 1.0000 20 chr8:38153618-38153638 1.0000 20 chr10:23702771-23702791 1.0000 20 chr11:68934177-68934197 1.0000 20 chr2:142286826-142286846 1.0000 20 chr9:93970513-93970533 1.0000 20 chr11:69152237-69152257 1.0000 20 chr18:11577456-11577476 1.0000 20 chr6:108919016-108919036 1.0000 20 chr10:112506952-11250697 1.0000 20 chr14:24075475-24075495 1.0000 20 chr1:186834529-186834549 1.0000 20 chr13:30392325-30392345 1.0000 20 chr1:108477334-108477354 1.0000 20 chr3:189067737-189067757 1.0000 20 chr1:246862562-246862582 1.0000 20 chr17:20937777-20937797 1.0000 20 chr14:72986005-72986025 1.0000 20 chr12:4969148-4969168 1.0000 20 chr1:184915372-184915392 1.0000 20 chr15:80325247-80325267 1.0000 20 chr7:28448933-28448953 1.0000 20 chr14:81588865-81588885 1.0000 20 chr22:24186783-24186803 1.0000 20 chr9:112680817-112680837 1.0000 20 chr6:36082997-36083017 1.0000 20 chr13:49554303-49554323 1.0000 20 chr20:45181827-45181847 1.0000 20 chr19:6458081-6458101 1.0000 20 chr2:74307246-74307266 1.0000 20 chr10:70757634-70757654 1.0000 20 chr11:121408861-12140888 1.0000 20 chr16:89489132-89489152 1.0000 20 chr10:75229507-75229527 1.0000 20 chr10:115785259-11578527 1.0000 20 chr1:27986285-27986305 1.0000 20 chr6:144223449-144223469 1.0000 20 chr2:48060783-48060803 1.0000 20 chr2:25287279-25287299 1.0000 20 chr7:86759321-86759341 1.0000 20 chr8:59881638-59881658 1.0000 20 chr5:131965453-131965473 1.0000 20 chr2:171017300-171017320 1.0000 20 chr2:38161875-38161895 1.0000 20 chr9:127635245-127635265 1.0000 20 chr13:75940102-75940122 1.0000 20 chr16:73050512-73050532 1.0000 20 chr5:89226743-89226763 1.0000 20 chr3:119257845-119257865 1.0000 20 chr9:123918943-123918963 1.0000 20 chr17:38021841-38021861 1.0000 20 chr15:80303482-80303502 1.0000 20 chr5:123986024-123986044 1.0000 20 chr16:27312945-27312965 1.0000 20 chr10:115639627-11563964 1.0000 20 chr5:173700577-173700597 1.0000 20 chr12:48206912-48206932 1.0000 20 chr6:166954597-166954617 1.0000 20 chr12:112534047-11253406 1.0000 20 chr2:188941568-188941588 1.0000 20 chr9:4815052-4815072 1.0000 20 chr1:81903475-81903495 1.0000 20 chr3:112627290-112627310 1.0000 20 chr15:65222567-65222587 1.0000 20 chr6:7917389-7917409 1.0000 20 chr1:112239199-112239219 1.0000 20 chr6:121781515-121781535 1.0000 20 chr2:105931968-105931988 1.0000 20 chr18:60331304-60331324 1.0000 20 chr15:57252472-57252492 1.0000 20 chr1:85328617-85328637 1.0000 20 chr14:20801599-20801619 1.0000 20 chr8:104778085-104778105 1.0000 20 chr4:129596403-129596423 1.0000 20 chr9:110637037-110637057 1.0000 20 chr10:52020681-52020701 1.0000 20 chr6:16670990-16671010 1.0000 20 chr5:107857228-107857248 1.0000 20 chr20:33343361-33343381 1.0000 20 chr7:92261673-92261693 1.0000 20 chr5:61581385-61581405 1.0000 20 chr2:120110160-120110180 1.0000 20 chrX:96489888-96489908 1.0000 20 chr15:85904674-85904694 1.0000 20 chr20:57483034-57483054 1.0000 20 chr11:32551910-32551930 1.0000 20 chrX:38130722-38130742 1.0000 20 chr5:158369380-158369400 1.0000 20 chr14:50324325-50324345 1.0000 20 chr12:14520425-14520445 1.0000 20 chr14:73869490-73869510 1.0000 20 chr22:20979738-20979758 1.0000 20 chr17:55500265-55500285 1.0000 20 chr4:6966430-6966450 1.0000 20 chr1:15655770-15655790 1.0000 20 chr10:92753322-92753342 1.0000 20 chr1:181100623-181100643 1.0000 20 chr8:135563872-135563892 1.0000 20 chr13:25497544-25497564 1.0000 20 chr3:112183251-112183271 1.0000 20 chr5:68671165-68671185 1.0000 20 chr5:88367984-88368004 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_MEF2A/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/MEF2A.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.311 C 0.184 G 0.191 T 0.315 Background letter frequencies (from file dataset with add-one prior applied): A 0.311 C 0.184 G 0.191 T 0.315 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF YAAAAATA MEME-1 width = 8 sites = 47 llr = 305 E-value = 1.4e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif YAAAAATA MEME-1 Description -------------------------------------------------------------------------------- Simplified A :879aa19 pos.-specific C 41:::::: probability G :::1:::1 matrix T 613:::9: bits 2.4 2.2 2.0 1.7 * Relative 1.5 ** * Entropy 1.2 ***** (9.4 bits) 1.0 * ***** 0.7 ** ***** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TAAAAATA consensus C T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YAAAAATA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr13:25497544-25497564 3 5.24e-05 TC CAAAAATA GGCATCTTTC chr17:38021841-38021861 13 5.24e-05 TTTCTAAAAG CAAAAATA chr1:212336097-212336117 11 5.24e-05 CACCCACAGA CAAAAATA GA chr2:46720819-46720839 7 5.24e-05 CTAGTA CAAAAATA GAATGT chr1:231093544-231093564 2 5.24e-05 C CAAAAATA ACTCACTAGC chr2:38162469-38162489 2 5.24e-05 C CAAAAATA TAGACAGTGC chr7:129590586-129590606 8 5.24e-05 TTCTAAA CAAAAATA AAACC chr6:36082997-36083017 10 1.42e-04 GTTTGCAAC TAAAAATA GAA chr10:112506952-11250697 12 1.42e-04 ATACCCTCAC TAAAAATA A chr11:68934177-68934197 1 1.42e-04 . TAAAAATA AAAGAAGTGA chr4:71547683-71547703 4 1.42e-04 AAC TAAAAATA ATCTTTCTT chr16:10885118-10885138 6 1.42e-04 ATTGT TAAAAATA AGTAGGG chr13:42269184-42269204 4 1.42e-04 GTT TAAAAATA GAATTTTGC chr9:102130740-102130760 7 1.42e-04 TTCTGT TAAAAATA GCCTTT chr4:47566530-47566550 3 1.42e-04 TC TAAAAATA GACTCAGGGA chr14:35180559-35180579 7 1.95e-04 GTTTGC CATAAATA GCCCTG chr5:88367984-88368004 7 2.86e-04 ATCTGC TATAAATA CTTGTT chr11:69152237-69152257 1 2.86e-04 . tataaata tttgtgtatg chr7:22425132-22425152 13 2.86e-04 GTTCGAACCC TATAAATA chr12:6277166-6277186 4 2.86e-04 agc tataaata gtccaaaga chr11:66185862-66185882 7 2.86e-04 TGGTGA TATAAATA GCTCCT chr18:9354462-9354482 6 2.86e-04 AAATA TATAAATA ACCCAGT chr1:184915372-184915392 12 3.18e-04 acttctcttc caagaata g chr18:56810858-56810878 10 3.72e-04 ttcactatc ctaaaata gcc chr3:112183251-112183271 1 4.27e-04 . TAAGAATA CCACAAGCAG chr5:61572975-61572995 4 5.49e-04 AAC CCAAAATA GCAGCCAAT chr2:202279035-202279055 12 5.49e-04 ATACTAGGGC TTAAAATA G chr1:161751944-161751964 13 6.34e-04 AATTTCTTGC CAAAAATG chr10:61846802-61846822 5 6.99e-04 AAAG CATGAATA AACGAAAC chr22:20234872-20234892 8 6.99e-04 CCAAGGC CAGAAATA GCTCC chr2:225816648-225816668 10 6.99e-04 tttctaaac cagaaata gcc chr3:112627290-112627310 13 8.39e-04 TCATGAGCAA CTTAAATA chr2:188941568-188941588 13 8.39e-04 GTCTTATTTC TAAAAATG chr2:178034738-178034758 2 8.39e-04 C CTTAAATA GAATTTTTTT chr8:102806023-102806043 3 8.39e-04 TG TAAAAATG TCAAGGCTGC chr6:110090613-110090633 2 9.50e-04 T TATGAATA ATGTGGCTAA chr5:131856616-131856636 7 1.00e-03 atgaaa caaaaaaa ttcttt chr1:161885176-161885196 9 1.18e-03 aaaaaagc tttaaata gtac chr2:197369704-197369724 5 1.18e-03 TCTG TAAAACTA TTAATACA chr5:73874632-73874652 11 1.18e-03 GCCACAATCC TAAAACTA TG chr10:114306437-11430645 3 1.27e-03 TT TAAAAAAA GAGGCATATT chr2:68444015-68444035 7 1.27e-03 TCTATT TAAAAAAA TGTTCC chr12:112534047-11253406 7 1.39e-03 GTCAAT TCTAAATA TACAAT chr12:95482267-95482287 9 1.39e-03 aaacatta ctagaata agaa chr21:33508438-33508458 10 1.39e-03 CATTCAGCT TCTAAATA TAC chr3:178232065-178232085 1 1.42e-03 . CAAAAAGA CATCTGCCAT chr4:106555748-106555768 1 1.58e-03 . TTAGAATA GCCTGTCTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YAAAAATA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr13:25497544-25497564 5.2e-05 2_[+1]_10 chr17:38021841-38021861 5.2e-05 12_[+1] chr1:212336097-212336117 5.2e-05 10_[+1]_2 chr2:46720819-46720839 5.2e-05 6_[+1]_6 chr1:231093544-231093564 5.2e-05 1_[+1]_11 chr2:38162469-38162489 5.2e-05 1_[+1]_11 chr7:129590586-129590606 5.2e-05 7_[+1]_5 chr6:36082997-36083017 0.00014 9_[+1]_3 chr10:112506952-11250697 0.00014 11_[+1]_1 chr11:68934177-68934197 0.00014 [+1]_12 chr4:71547683-71547703 0.00014 3_[+1]_9 chr16:10885118-10885138 0.00014 5_[+1]_7 chr13:42269184-42269204 0.00014 3_[+1]_9 chr9:102130740-102130760 0.00014 6_[+1]_6 chr4:47566530-47566550 0.00014 2_[+1]_10 chr14:35180559-35180579 0.0002 6_[+1]_6 chr5:88367984-88368004 0.00029 6_[+1]_6 chr11:69152237-69152257 0.00029 [+1]_12 chr7:22425132-22425152 0.00029 12_[+1] chr12:6277166-6277186 0.00029 3_[+1]_9 chr11:66185862-66185882 0.00029 6_[+1]_6 chr18:9354462-9354482 0.00029 5_[+1]_7 chr1:184915372-184915392 0.00032 11_[+1]_1 chr18:56810858-56810878 0.00037 9_[+1]_3 chr3:112183251-112183271 0.00043 [+1]_12 chr5:61572975-61572995 0.00055 3_[+1]_9 chr2:202279035-202279055 0.00055 11_[+1]_1 chr1:161751944-161751964 0.00063 12_[+1] chr10:61846802-61846822 0.0007 4_[+1]_8 chr22:20234872-20234892 0.0007 7_[+1]_5 chr2:225816648-225816668 0.0007 9_[+1]_3 chr3:112627290-112627310 0.00084 12_[+1] chr2:188941568-188941588 0.00084 12_[+1] chr2:178034738-178034758 0.00084 1_[+1]_11 chr8:102806023-102806043 0.00084 2_[+1]_10 chr6:110090613-110090633 0.00095 1_[+1]_11 chr5:131856616-131856636 0.001 6_[+1]_6 chr1:161885176-161885196 0.0012 8_[+1]_4 chr2:197369704-197369724 0.0012 4_[+1]_8 chr5:73874632-73874652 0.0012 10_[+1]_2 chr10:114306437-11430645 0.0013 2_[+1]_10 chr2:68444015-68444035 0.0013 6_[+1]_6 chr12:112534047-11253406 0.0014 6_[+1]_6 chr12:95482267-95482287 0.0014 8_[+1]_4 chr21:33508438-33508458 0.0014 9_[+1]_3 chr3:178232065-178232085 0.0014 [+1]_12 chr4:106555748-106555768 0.0016 [+1]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YAAAAATA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YAAAAATA width=8 seqs=47 chr13:25497544-25497564 ( 3) CAAAAATA 1 chr17:38021841-38021861 ( 13) CAAAAATA 1 chr1:212336097-212336117 ( 11) CAAAAATA 1 chr2:46720819-46720839 ( 7) CAAAAATA 1 chr1:231093544-231093564 ( 2) CAAAAATA 1 chr2:38162469-38162489 ( 2) CAAAAATA 1 chr7:129590586-129590606 ( 8) CAAAAATA 1 chr6:36082997-36083017 ( 10) TAAAAATA 1 chr10:112506952-11250697 ( 12) TAAAAATA 1 chr11:68934177-68934197 ( 1) TAAAAATA 1 chr4:71547683-71547703 ( 4) TAAAAATA 1 chr16:10885118-10885138 ( 6) TAAAAATA 1 chr13:42269184-42269204 ( 4) TAAAAATA 1 chr9:102130740-102130760 ( 7) TAAAAATA 1 chr4:47566530-47566550 ( 3) TAAAAATA 1 chr14:35180559-35180579 ( 7) CATAAATA 1 chr5:88367984-88368004 ( 7) TATAAATA 1 chr11:69152237-69152257 ( 1) TATAAATA 1 chr7:22425132-22425152 ( 13) TATAAATA 1 chr12:6277166-6277186 ( 4) TATAAATA 1 chr11:66185862-66185882 ( 7) TATAAATA 1 chr18:9354462-9354482 ( 6) TATAAATA 1 chr1:184915372-184915392 ( 12) CAAGAATA 1 chr18:56810858-56810878 ( 10) CTAAAATA 1 chr3:112183251-112183271 ( 1) TAAGAATA 1 chr5:61572975-61572995 ( 4) CCAAAATA 1 chr2:202279035-202279055 ( 12) TTAAAATA 1 chr1:161751944-161751964 ( 13) CAAAAATG 1 chr10:61846802-61846822 ( 5) CATGAATA 1 chr22:20234872-20234892 ( 8) CAGAAATA 1 chr2:225816648-225816668 ( 10) CAGAAATA 1 chr3:112627290-112627310 ( 13) CTTAAATA 1 chr2:188941568-188941588 ( 13) TAAAAATG 1 chr2:178034738-178034758 ( 2) CTTAAATA 1 chr8:102806023-102806043 ( 3) TAAAAATG 1 chr6:110090613-110090633 ( 2) TATGAATA 1 chr5:131856616-131856636 ( 7) CAAAAAAA 1 chr1:161885176-161885196 ( 9) TTTAAATA 1 chr2:197369704-197369724 ( 5) TAAAACTA 1 chr5:73874632-73874652 ( 11) TAAAACTA 1 chr10:114306437-11430645 ( 3) TAAAAAAA 1 chr2:68444015-68444035 ( 7) TAAAAAAA 1 chr12:112534047-11253406 ( 7) TCTAAATA 1 chr12:95482267-95482287 ( 9) CTAGAATA 1 chr21:33508438-33508458 ( 10) TCTAAATA 1 chr3:178232065-178232085 ( 1) CAAAAAGA 1 chr4:106555748-106555768 ( 1) TTAGAATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YAAAAATA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 6.52132 E= 1.4e-010 -1220 121 -1220 87 134 -153 -1220 -108 109 -1220 -216 -8 149 -1220 -58 -1220 169 -1220 -1220 -1220 162 -211 -1220 -1220 -228 -1220 -316 154 159 -1220 -158 -1220 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YAAAAATA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 47 E= 1.4e-010 0.000000 0.425532 0.000000 0.574468 0.787234 0.063830 0.000000 0.148936 0.659574 0.000000 0.042553 0.297872 0.872340 0.000000 0.127660 0.000000 1.000000 0.000000 0.000000 0.000000 0.957447 0.042553 0.000000 0.000000 0.063830 0.000000 0.021277 0.914894 0.936170 0.000000 0.063830 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YAAAAATA MEME-1 regular expression -------------------------------------------------------------------------------- [TC]A[AT]AAATA -------------------------------------------------------------------------------- Time 3.29 secs. ******************************************************************************** ******************************************************************************** MOTIF KCASAGGC MEME-2 width = 8 sites = 8 llr = 76 E-value = 1.1e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif KCASAGGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::8:8::: pos.-specific C 1a35:::a probability G 5::5:aa: matrix T 4:::3::: bits 2.4 * *** 2.2 * *** 2.0 * *** 1.7 * *** Relative 1.5 * * *** Entropy 1.2 * * *** (13.7 bits) 1.0 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCACAGGC consensus T CGT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCASAGGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:146351072-146351092 7 4.20e-06 AAAGAA GCACAGGC CTTAAA chr12:109058246-10905826 9 1.10e-05 TAAATTCT GCCCAGGC TAAA chr12:115942256-11594227 13 1.10e-05 AGAGACACCA GCCCAGGC chr1:27986285-27986305 11 2.77e-05 CTCGCTGAGG TCAGAGGC AC chr19:10523136-10523156 12 2.77e-05 tatttatagc tcagaggc c chr13:75940102-75940122 6 3.64e-05 AGAAA GCAGTGGC TTCTCAC chr10:100234571-10023459 9 4.45e-05 GGCACCAC CCACAGGC TGCT chr6:132726509-132726529 13 7.48e-05 atactatgag tcagtggc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCASAGGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:146351072-146351092 4.2e-06 6_[+2]_6 chr12:109058246-10905826 1.1e-05 8_[+2]_4 chr12:115942256-11594227 1.1e-05 12_[+2] chr1:27986285-27986305 2.8e-05 10_[+2]_2 chr19:10523136-10523156 2.8e-05 11_[+2]_1 chr13:75940102-75940122 3.6e-05 5_[+2]_7 chr10:100234571-10023459 4.5e-05 8_[+2]_4 chr6:132726509-132726529 7.5e-05 12_[+2] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCASAGGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KCASAGGC width=8 seqs=8 chr2:146351072-146351092 ( 7) GCACAGGC 1 chr12:109058246-10905826 ( 9) GCCCAGGC 1 chr12:115942256-11594227 ( 13) GCCCAGGC 1 chr1:27986285-27986305 ( 11) TCAGAGGC 1 chr19:10523136-10523156 ( 12) TCAGAGGC 1 chr13:75940102-75940122 ( 6) GCAGTGGC 1 chr10:100234571-10023459 ( 9) CCACAGGC 1 chr6:132726509-132726529 ( 13) TCAGTGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCASAGGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.40106 E= 1.1e+002 -965 -56 139 25 -965 244 -965 -965 127 44 -965 -965 -965 144 139 -965 127 -965 -965 -33 -965 -965 239 -965 -965 -965 239 -965 -965 244 -965 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCASAGGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 1.1e+002 0.000000 0.125000 0.500000 0.375000 0.000000 1.000000 0.000000 0.000000 0.750000 0.250000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.750000 0.000000 0.000000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCASAGGC MEME-2 regular expression -------------------------------------------------------------------------------- [GT]C[AC][CG][AT]GGC -------------------------------------------------------------------------------- Time 4.46 secs. ******************************************************************************** ******************************************************************************** MOTIF ACCDKGGG MEME-3 width = 8 sites = 6 llr = 63 E-value = 6.0e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACCDKGGG MEME-3 Description -------------------------------------------------------------------------------- Simplified A a::3:::: pos.-specific C :aa::::: probability G :::33aaa matrix T :::37::: bits 2.4 ** *** 2.2 ** *** 2.0 ** *** 1.7 *** *** Relative 1.5 *** *** Entropy 1.2 *** *** (15.1 bits) 1.0 *** **** 0.7 *** **** 0.5 *** **** 0.2 ******** 0.0 -------- Multilevel ACCATGGG consensus GG sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCDKGGG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:74064484-74064504 11 4.41e-06 accgcggttg accgtggg ta chr7:28448933-28448953 1 7.09e-06 . ACCGGGGG GGTGATGTAA chr4:6966430-6966450 13 2.16e-05 AATAGAAATT ACCTTGGG chr17:55500265-55500285 6 2.16e-05 AGGGC ACCATGGG TTTCTTT chr5:158369380-158369400 1 2.16e-05 . accttggg caagttactt chr12:65582989-65583009 1 3.03e-05 . accagggg taactgaaac -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCDKGGG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:74064484-74064504 4.4e-06 10_[+3]_2 chr7:28448933-28448953 7.1e-06 [+3]_12 chr4:6966430-6966450 2.2e-05 12_[+3] chr17:55500265-55500285 2.2e-05 5_[+3]_7 chr5:158369380-158369400 2.2e-05 [+3]_12 chr12:65582989-65583009 3e-05 [+3]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCDKGGG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACCDKGGG width=8 seqs=6 chr7:74064484-74064504 ( 11) ACCGTGGG 1 chr7:28448933-28448953 ( 1) ACCGGGGG 1 chr4:6966430-6966450 ( 13) ACCTTGGG 1 chr17:55500265-55500285 ( 6) ACCATGGG 1 chr5:158369380-158369400 ( 1) ACCTTGGG 1 chr12:65582989-65583009 ( 1) ACCAGGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCDKGGG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.52677 E= 6.0e+001 169 -923 -923 -923 -923 244 -923 -923 -923 244 -923 -923 10 -923 81 8 -923 -923 81 108 -923 -923 239 -923 -923 -923 239 -923 -923 -923 239 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCDKGGG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 6.0e+001 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.000000 0.333333 0.333333 0.000000 0.000000 0.333333 0.666667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCDKGGG MEME-3 regular expression -------------------------------------------------------------------------------- ACC[AGT][TG]GGG -------------------------------------------------------------------------------- Time 5.52 secs. ******************************************************************************** ******************************************************************************** MOTIF TATTTTTR MEME-4 width = 8 sites = 19 llr = 142 E-value = 6.3e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TATTTTTR MEME-4 Description -------------------------------------------------------------------------------- Simplified A :a:::3:5 pos.-specific C 1::::1:: probability G ::::::25 matrix T 9:aaa68: bits 2.4 2.2 2.0 1.7 **** Relative 1.5 ***** Entropy 1.2 ***** * (10.8 bits) 1.0 ***** ** 0.7 ***** ** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TATTTTTA consensus A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATTTTTR MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr16:89489132-89489152 7 5.80e-05 GATGCT TATTTTTG GAAAGG chr11:34373821-34373841 5 5.80e-05 TCAC TATTTTTG GCCTAAAG chr22:34238150-34238170 12 5.80e-05 CTTTTTGATC TATTTTTG T chr16:17441338-17441358 13 5.80e-05 TTAGAATGTT TATTTTTG chr10:92753322-92753342 1 1.53e-04 . tattttta gatacttttt chr6:16670990-16671010 8 1.53e-04 TTTTGGA TATTTTTA AGCAG chr9:112680817-112680837 13 1.53e-04 GCCCATTCTT TATTTTTA chr8:72171822-72171842 8 1.53e-04 TGTAGTC TATTTTTA GTGGC chr6:139922214-139922234 6 2.10e-04 ACACT TATTTATG GCTGGGG chr1:181100623-181100643 4 3.38e-04 GGT TATTTATA GAAATGGGG chr5:107857228-107857248 4 3.38e-04 gcc tattttgg tttcccaca chr9:110637037-110637057 5 3.38e-04 GATT TATTTATA GTTTAGGG chr6:106973075-106973095 13 3.38e-04 GTCTTGATTC TATTTTGG chr19:10523136-10523156 2 3.38e-04 c tatttata gctcagaggc chr6:24933353-24933373 1 3.38e-04 . TATTTATA AACTGAAGTT chr11:32551910-32551930 8 3.72e-04 AAAATCC TATTTCTG GACTT chr20:47357439-47357459 5 4.29e-04 catt tattttga caattacc chr14:35837010-35837030 10 4.85e-04 GGAGAACTG TATTTCTA TTT chr15:57252472-57252492 2 5.53e-04 T CATTTTTG CAGTAAAGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATTTTTR MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:89489132-89489152 5.8e-05 6_[+4]_6 chr11:34373821-34373841 5.8e-05 4_[+4]_8 chr22:34238150-34238170 5.8e-05 11_[+4]_1 chr16:17441338-17441358 5.8e-05 12_[+4] chr10:92753322-92753342 0.00015 [+4]_12 chr6:16670990-16671010 0.00015 7_[+4]_5 chr9:112680817-112680837 0.00015 12_[+4] chr8:72171822-72171842 0.00015 7_[+4]_5 chr6:139922214-139922234 0.00021 5_[+4]_7 chr1:181100623-181100643 0.00034 3_[+4]_9 chr5:107857228-107857248 0.00034 3_[+4]_9 chr9:110637037-110637057 0.00034 4_[+4]_8 chr6:106973075-106973095 0.00034 12_[+4] chr19:10523136-10523156 0.00034 1_[+4]_11 chr6:24933353-24933373 0.00034 [+4]_12 chr11:32551910-32551930 0.00037 7_[+4]_5 chr20:47357439-47357459 0.00043 4_[+4]_8 chr14:35837010-35837030 0.00048 9_[+4]_3 chr15:57252472-57252492 0.00055 1_[+4]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATTTTTR MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TATTTTTR width=8 seqs=19 chr16:89489132-89489152 ( 7) TATTTTTG 1 chr11:34373821-34373841 ( 5) TATTTTTG 1 chr22:34238150-34238170 ( 12) TATTTTTG 1 chr16:17441338-17441358 ( 13) TATTTTTG 1 chr10:92753322-92753342 ( 1) TATTTTTA 1 chr6:16670990-16671010 ( 8) TATTTTTA 1 chr9:112680817-112680837 ( 13) TATTTTTA 1 chr8:72171822-72171842 ( 8) TATTTTTA 1 chr6:139922214-139922234 ( 6) TATTTATG 1 chr1:181100623-181100643 ( 4) TATTTATA 1 chr5:107857228-107857248 ( 4) TATTTTGG 1 chr9:110637037-110637057 ( 5) TATTTATA 1 chr6:106973075-106973095 ( 13) TATTTTGG 1 chr19:10523136-10523156 ( 2) TATTTATA 1 chr6:24933353-24933373 ( 1) TATTTATA 1 chr11:32551910-32551930 ( 8) TATTTCTG 1 chr20:47357439-47357459 ( 5) TATTTTGA 1 chr14:35837010-35837030 ( 10) TATTTCTA 1 chr15:57252472-57252492 ( 2) CATTTTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATTTTTR MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.60572 E= 6.3e+002 -1089 -181 -1089 159 169 -1089 -1089 -1089 -1089 -1089 -1089 167 -1089 -1089 -1089 167 -1089 -1089 -1089 167 -24 -81 -1089 101 -1089 -1089 -27 142 76 -1089 131 -1089 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATTTTTR MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 6.3e+002 0.000000 0.052632 0.000000 0.947368 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.263158 0.105263 0.000000 0.631579 0.000000 0.000000 0.157895 0.842105 0.526316 0.000000 0.473684 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATTTTTR MEME-4 regular expression -------------------------------------------------------------------------------- TATTT[TA]T[AG] -------------------------------------------------------------------------------- Time 6.26 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGMDGTG MEME-5 width = 8 sites = 10 llr = 89 E-value = 2.4e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGMDGTG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :a:54:1: pos.-specific C a:24:::: probability G ::812a:a matrix T ::::4:9: bits 2.4 * * * 2.2 * * * 2.0 * * * 1.7 *** * * Relative 1.5 *** * * Entropy 1.2 *** *** (12.8 bits) 1.0 *** *** 0.7 **** *** 0.5 **** *** 0.2 ******** 0.0 -------- Multilevel CAGAAGTG consensus CCT sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGMDGTG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:166954597-166954617 11 1.45e-05 TCCCATCATG CAGCTGTG TT chr5:131965453-131965473 11 1.45e-05 CACAGGAAGT CAGCAGTG CA chr14:50324325-50324345 2 4.33e-05 a cagaagtg atactatgct chr16:25030496-25030516 5 4.33e-05 AAAG CAGAAGTG AAACGCAT chr15:65222567-65222587 11 5.08e-05 ctcaggagga cagaggtg gg chr1:246862562-246862582 10 5.08e-05 GAAAATGCC CAGAGGTG CTT chr15:85904674-85904694 9 7.97e-05 TTAAGGCA CACCAGTG CTTG chr5:173700577-173700597 12 7.97e-05 AGAGAGAGAA CAGGTGTG T chr16:11676216-11676236 1 1.12e-04 . CACATGTG GGTGGTAAAC chr17:48241394-48241414 5 1.34e-04 AAGA CAGCTGAG TGGGTGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGMDGTG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:166954597-166954617 1.4e-05 10_[+5]_2 chr5:131965453-131965473 1.4e-05 10_[+5]_2 chr14:50324325-50324345 4.3e-05 1_[+5]_11 chr16:25030496-25030516 4.3e-05 4_[+5]_8 chr15:65222567-65222587 5.1e-05 10_[+5]_2 chr1:246862562-246862582 5.1e-05 9_[+5]_3 chr15:85904674-85904694 8e-05 8_[+5]_4 chr5:173700577-173700597 8e-05 11_[+5]_1 chr16:11676216-11676236 0.00011 [+5]_12 chr17:48241394-48241414 0.00013 4_[+5]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGMDGTG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGMDGTG width=8 seqs=10 chr6:166954597-166954617 ( 11) CAGCTGTG 1 chr5:131965453-131965473 ( 11) CAGCAGTG 1 chr14:50324325-50324345 ( 2) CAGAAGTG 1 chr16:25030496-25030516 ( 5) CAGAAGTG 1 chr15:65222567-65222587 ( 11) CAGAGGTG 1 chr1:246862562-246862582 ( 10) CAGAGGTG 1 chr15:85904674-85904694 ( 9) CACCAGTG 1 chr5:173700577-173700597 ( 12) CAGGTGTG 1 chr16:11676216-11676236 ( 1) CACATGTG 1 chr17:48241394-48241414 ( 5) CAGCTGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGMDGTG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.77211 E= 2.4e+002 -997 244 -997 -997 169 -997 -997 -997 -997 12 207 -997 69 112 -93 -997 36 -997 7 35 -997 -997 239 -997 -163 -997 -997 152 -997 -997 239 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGMDGTG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 2.4e+002 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.200000 0.800000 0.000000 0.500000 0.400000 0.100000 0.000000 0.400000 0.000000 0.200000 0.400000 0.000000 0.000000 1.000000 0.000000 0.100000 0.000000 0.000000 0.900000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGMDGTG MEME-5 regular expression -------------------------------------------------------------------------------- CA[GC][AC][ATG]GTG -------------------------------------------------------------------------------- Time 6.97 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:62981714-62981734 6.16e-01 20 chr10:64467791-64467811 5.14e-01 20 chr7:28663145-28663165 4.99e-01 20 chr3:35634246-35634266 2.01e-01 20 chr13:42659091-42659111 6.67e-01 20 chr18:56810858-56810878 1.35e-01 20 chr1:184618738-184618758 8.01e-01 20 chr8:81524959-81524979 5.87e-01 20 chr4:47566530-47566550 2.32e-02 20 chr2:68444015-68444035 1.31e-01 20 chr9:100629309-100629329 3.69e-01 20 chr1:53712108-53712128 5.56e-01 20 chr2:225816648-225816668 1.01e-01 20 chr6:132726509-132726529 8.81e-03 12_[+2(7.48e-05)] chr2:33756049-33756069 3.10e-01 20 chr6:119468683-119468703 2.64e-01 20 chr7:18535257-18535277 3.47e-01 20 chr5:148185762-148185782 2.17e-01 20 chr7:74064484-74064504 1.63e-03 10_[+3(4.41e-06)]_2 chr7:73427392-73427412 4.86e-02 20 chr1:194799690-194799710 4.14e-01 20 chr2:43135878-43135898 8.11e-01 20 chr2:180817543-180817563 4.40e-01 20 chr18:9354462-9354482 2.04e-01 20 chr18:44154184-44154204 5.52e-01 20 chr6:24933353-24933373 4.74e-02 20 chr2:202279035-202279055 7.78e-02 20 chr10:100234571-10023459 1.70e-02 8_[+2(4.45e-05)]_4 chr21:33508438-33508458 2.29e-01 20 chr8:56841701-56841721 3.29e-01 20 chr16:17441338-17441358 2.54e-02 12_[+4(5.80e-05)] chr5:131856616-131856636 4.59e-01 20 chr22:20234872-20234892 1.23e-01 20 chr7:117421049-117421069 1.57e-01 20 chr1:85065296-85065316 1.75e-01 20 chr4:147190696-147190716 9.35e-01 20 chr10:75768105-75768125 6.96e-01 20 chr6:110090613-110090633 9.64e-02 20 chr4:132347695-132347715 3.39e-01 20 chr5:73874632-73874652 1.67e-01 20 chr2:42256014-42256034 5.06e-01 20 chr12:95482267-95482287 2.25e-01 20 chr1:79926662-79926682 8.14e-01 20 chr12:65582989-65583009 1.05e-03 [+3(3.03e-05)]_12 chr16:10896665-10896685 4.32e-01 20 chr9:93862629-93862649 4.40e-02 20 chr3:178232065-178232085 2.75e-01 20 chr7:86415103-86415123 1.01e-01 20 chr2:197369704-197369724 1.81e-01 20 chr16:25030496-25030516 9.08e-03 4_[+5(4.33e-05)]_8 chr7:20070845-20070865 5.40e-02 20 chr8:72171822-72171842 2.24e-02 20 chr9:102130740-102130760 1.75e-01 20 chr22:43396591-43396611 5.54e-01 20 chr4:30463053-30463073 1.72e-01 20 chr12:131486931-13148695 6.07e-01 20 chr13:78293479-78293499 3.37e-01 20 chr14:35837010-35837030 9.55e-02 20 chr19:10523136-10523156 2.15e-04 11_[+2(2.77e-05)]_1 chr17:48241394-48241414 3.15e-02 20 chr14:35180559-35180579 1.07e-01 20 chr2:55523729-55523749 5.09e-01 20 chr6:139922214-139922234 1.70e-02 20 chr7:90561967-90561987 6.94e-01 20 chr2:20351244-20351264 5.72e-01 20 chr7:108263876-108263896 3.74e-01 20 chr13:42269184-42269204 8.31e-02 20 chr7:129590586-129590606 1.14e-01 7_[+1(5.24e-05)]_5 chr10:61846802-61846822 2.40e-01 20 chr5:107970829-107970849 5.11e-01 20 chr8:107680258-107680278 1.27e-01 20 chr8:60969510-60969530 4.50e-01 20 chr10:114306437-11430645 5.26e-02 20 chr5:39784033-39784053 6.18e-01 20 chr11:66185862-66185882 1.78e-01 20 chr3:17615077-17615097 8.20e-01 20 chr10:76434813-76434833 8.47e-01 20 chr3:185599110-185599130 5.29e-01 20 chr17:38754320-38754340 7.70e-01 20 chr6:106973075-106973095 3.11e-01 20 chr6:87797995-87798015 1.05e-01 20 chr2:153421514-153421534 6.72e-01 20 chr22:34238150-34238170 1.00e-01 11_[+4(5.80e-05)]_1 chr15:59529478-59529498 5.45e-01 20 chr10:9373685-9373705 6.77e-01 20 chr16:10885118-10885138 3.67e-02 20 chr4:83214637-83214657 5.05e-02 20 chr11:34373821-34373841 3.96e-02 4_[+4(5.80e-05)]_8 chr4:77776232-77776252 7.79e-01 20 chr4:7784619-7784639 5.53e-01 20 chr12:6277166-6277186 1.27e-01 20 chr1:157532425-157532445 7.47e-01 20 chr1:14366692-14366712 6.07e-02 20 chr8:95973017-95973037 2.25e-01 20 chr8:17785507-17785527 9.26e-01 20 chr18:31296430-31296450 4.34e-01 20 chr1:221930736-221930756 1.42e-01 20 chr2:146351072-146351092 3.96e-03 6_[+2(4.20e-06)]_6 chr19:15054528-15054548 7.14e-02 20 chr1:165723374-165723394 4.17e-01 20 chr7:22425132-22425152 6.82e-02 20 chr8:102806023-102806043 4.06e-02 20 chr1:179972610-179972630 7.18e-01 20 chr20:47357439-47357459 1.18e-01 20 chr8:117721613-117721633 5.86e-01 20 chr3:104233417-104233437 5.91e-01 20 chr1:161676428-161676448 6.26e-01 20 chr3:178387033-178387053 4.18e-02 20 chr13:46674537-46674557 4.36e-01 20 chr2:65833551-65833571 7.87e-02 20 chr13:45242323-45242343 3.34e-01 20 chr6:22271452-22271472 2.04e-01 20 chr2:38162469-38162489 2.18e-02 1_[+1(5.24e-05)]_11 chr4:106555748-106555768 1.62e-01 20 chr10:63805099-63805119 7.30e-01 20 chr1:231093544-231093564 9.13e-03 1_[+1(5.24e-05)]_11 chr12:115942256-11594227 1.15e-02 12_[+2(1.10e-05)] chr5:61572975-61572995 1.66e-01 20 chr10:64220307-64220327 1.40e-01 20 chr5:80802939-80802959 3.71e-02 20 chr5:73856273-73856293 5.36e-01 20 chr18:60825186-60825206 2.07e-01 20 chr2:46720819-46720839 1.04e-01 6_[+1(5.24e-05)]_6 chr10:3668682-3668702 4.30e-01 20 chr3:81837999-81838019 5.57e-01 20 chr4:71547683-71547703 1.40e-01 20 chr13:91772106-91772126 8.44e-01 20 chr6:36400198-36400218 1.11e-01 20 chr4:186401037-186401057 5.16e-01 20 chrX:20224314-20224334 3.96e-01 20 chr5:131439478-131439498 8.87e-01 20 chr1:161885176-161885196 4.18e-01 20 chr17:2394538-2394558 9.60e-01 20 chr10:5946385-5946405 9.80e-01 20 chr1:110359207-110359227 1.71e-01 20 chr7:83965771-83965791 6.87e-01 20 chr17:1335191-1335211 2.69e-01 20 chr3:158073897-158073917 9.00e-02 20 chr1:212336097-212336117 5.07e-03 10_[+1(5.24e-05)]_2 chr3:108012054-108012074 2.75e-01 20 chr1:161751944-161751964 7.68e-02 20 chr10:88172984-88173004 7.05e-01 20 chr16:11676216-11676236 3.04e-02 20 chr22:46168702-46168722 1.49e-02 20 chr11:78021678-78021698 4.77e-01 20 chr8:132828260-132828280 5.88e-01 20 chr2:178034738-178034758 2.01e-01 20 chr16:81855299-81855319 2.82e-02 20 chr12:109058246-10905826 8.77e-03 8_[+2(1.10e-05)]_4 chr8:38153618-38153638 5.97e-01 20 chr10:23702771-23702791 9.27e-01 20 chr11:68934177-68934197 1.29e-02 20 chr2:142286826-142286846 9.30e-01 20 chr9:93970513-93970533 4.53e-01 20 chr11:69152237-69152257 1.65e-02 20 chr18:11577456-11577476 6.35e-01 20 chr6:108919016-108919036 3.11e-01 20 chr10:112506952-11250697 1.25e-01 20 chr14:24075475-24075495 8.59e-01 20 chr1:186834529-186834549 2.90e-01 20 chr13:30392325-30392345 9.47e-01 20 chr1:108477334-108477354 1.67e-01 20 chr3:189067737-189067757 6.78e-01 20 chr1:246862562-246862582 1.39e-03 9_[+5(5.08e-05)]_3 chr17:20937777-20937797 2.03e-01 20 chr14:72986005-72986025 4.45e-01 20 chr12:4969148-4969168 2.56e-02 20 chr1:184915372-184915392 7.11e-02 20 chr15:80325247-80325267 1.95e-01 20 chr7:28448933-28448953 5.68e-03 [+3(7.09e-06)]_12 chr14:81588865-81588885 5.81e-01 20 chr22:24186783-24186803 4.45e-01 20 chr9:112680817-112680837 6.46e-02 20 chr6:36082997-36083017 2.09e-01 20 chr13:49554303-49554323 7.97e-01 20 chr20:45181827-45181847 6.86e-01 20 chr19:6458081-6458101 9.61e-02 20 chr2:74307246-74307266 4.56e-01 20 chr10:70757634-70757654 2.49e-01 20 chr11:121408861-12140888 3.41e-01 20 chr16:89489132-89489152 2.87e-02 6_[+4(5.80e-05)]_6 chr10:75229507-75229527 6.92e-01 20 chr10:115785259-11578527 9.63e-01 20 chr1:27986285-27986305 1.41e-02 10_[+2(2.77e-05)]_2 chr6:144223449-144223469 1.60e-01 20 chr2:48060783-48060803 7.11e-01 20 chr2:25287279-25287299 3.70e-02 20 chr7:86759321-86759341 4.35e-01 20 chr8:59881638-59881658 1.96e-01 20 chr5:131965453-131965473 7.34e-03 10_[+5(1.45e-05)]_2 chr2:171017300-171017320 8.86e-01 20 chr2:38161875-38161895 6.97e-01 20 chr9:127635245-127635265 8.89e-01 20 chr13:75940102-75940122 1.30e-03 5_[+2(3.64e-05)]_7 chr16:73050512-73050532 6.71e-01 20 chr5:89226743-89226763 7.35e-02 20 chr3:119257845-119257865 8.44e-01 20 chr9:123918943-123918963 8.83e-01 20 chr17:38021841-38021861 5.20e-02 12_[+1(5.24e-05)] chr15:80303482-80303502 6.50e-01 20 chr5:123986024-123986044 9.58e-01 20 chr16:27312945-27312965 8.22e-02 20 chr10:115639627-11563964 7.78e-01 20 chr5:173700577-173700597 6.04e-03 11_[+5(7.97e-05)]_1 chr12:48206912-48206932 3.79e-01 20 chr6:166954597-166954617 1.86e-02 10_[+5(1.45e-05)]_2 chr12:112534047-11253406 2.75e-01 20 chr2:188941568-188941588 2.91e-02 20 chr9:4815052-4815072 1.73e-01 20 chr1:81903475-81903495 9.84e-02 20 chr3:112627290-112627310 2.87e-02 20 chr15:65222567-65222587 4.02e-03 10_[+5(5.08e-05)]_2 chr6:7917389-7917409 2.65e-01 20 chr1:112239199-112239219 5.06e-01 20 chr6:121781515-121781535 1.79e-01 20 chr2:105931968-105931988 3.29e-01 20 chr18:60331304-60331324 9.72e-02 20 chr15:57252472-57252492 1.34e-01 20 chr1:85328617-85328637 2.19e-01 20 chr14:20801599-20801619 9.93e-01 20 chr8:104778085-104778105 2.68e-01 20 chr4:129596403-129596423 7.79e-01 20 chr9:110637037-110637057 1.76e-01 20 chr10:52020681-52020701 9.64e-01 20 chr6:16670990-16671010 1.36e-01 20 chr5:107857228-107857248 2.43e-01 20 chr20:33343361-33343381 1.30e-01 20 chr7:92261673-92261693 6.39e-01 20 chr5:61581385-61581405 4.48e-01 20 chr2:120110160-120110180 5.29e-01 20 chrX:96489888-96489908 9.82e-01 20 chr15:85904674-85904694 1.93e-02 8_[+5(7.97e-05)]_4 chr20:57483034-57483054 2.56e-01 20 chr11:32551910-32551930 1.83e-01 20 chrX:38130722-38130742 6.03e-01 20 chr5:158369380-158369400 2.72e-02 [+3(2.16e-05)]_12 chr14:50324325-50324345 2.12e-02 1_[+5(4.33e-05)]_11 chr12:14520425-14520445 5.86e-01 20 chr14:73869490-73869510 4.74e-01 20 chr22:20979738-20979758 9.37e-01 20 chr17:55500265-55500285 1.50e-02 5_[+3(2.16e-05)]_7 chr4:6966430-6966450 9.34e-03 12_[+3(2.16e-05)] chr1:15655770-15655790 2.98e-01 20 chr10:92753322-92753342 8.34e-02 20 chr1:181100623-181100643 2.91e-03 20 chr8:135563872-135563892 6.79e-01 20 chr13:25497544-25497564 1.96e-02 2_[+1(5.24e-05)]_10 chr3:112183251-112183271 5.17e-03 20 chr5:68671165-68671185 8.19e-01 20 chr5:88367984-88368004 1.52e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n04.farnam.hpc.yale.internal ********************************************************************************