******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/MAX.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr1:158985401-158985421 1.0000 20 chr2:241499655-241499675 1.0000 20 chr14:106267694-10626771 1.0000 20 chr5:179499218-179499238 1.0000 20 chr17:56327215-56327235 1.0000 20 chr3:160167763-160167783 1.0000 20 chr4:57302561-57302581 1.0000 20 chr19:30335339-30335359 1.0000 20 chr3:184032309-184032329 1.0000 20 chr7:2393694-2393714 1.0000 20 chr2:11919459-11919479 1.0000 20 chr8:71581601-71581621 1.0000 20 chr1:53169072-53169092 1.0000 20 chr17:33307460-33307480 1.0000 20 chr12:19592234-19592254 1.0000 20 chr21:46961735-46961755 1.0000 20 chr1:1565782-1565802 1.0000 20 chr16:88519073-88519093 1.0000 20 chr18:45457867-45457887 1.0000 20 chr2:227656011-227656031 1.0000 20 chr22:43253459-43253479 1.0000 20 chr3:13129770-13129790 1.0000 20 chr8:95907970-95907990 1.0000 20 chr5:126112706-126112726 1.0000 20 chr6:151187462-151187482 1.0000 20 chr1:156783732-156783752 1.0000 20 chr21:33765260-33765280 1.0000 20 chr9:139844587-139844607 1.0000 20 chr17:36831358-36831378 1.0000 20 chr17:47755685-47755705 1.0000 20 chr16:4588910-4588930 1.0000 20 chr14:91580955-91580975 1.0000 20 chr11:118901702-11890172 1.0000 20 chr17:34890857-34890877 1.0000 20 chr17:40897161-40897181 1.0000 20 chr22:24823524-24823544 1.0000 20 chr17:80455117-80455137 1.0000 20 chr5:68628659-68628679 1.0000 20 chr3:97690817-97690837 1.0000 20 chr16:58549349-58549369 1.0000 20 chr14:103234741-10323476 1.0000 20 chr3:183967373-183967393 1.0000 20 chr19:50393426-50393446 1.0000 20 chr11:119252527-11925254 1.0000 20 chr22:41777449-41777469 1.0000 20 chr2:232328515-232328535 1.0000 20 chr19:10138582-10138602 1.0000 20 chr13:95253816-95253836 1.0000 20 chr1:151170912-151170932 1.0000 20 chr2:227700597-227700617 1.0000 20 chr14:93799477-93799497 1.0000 20 chr1:38061547-38061567 1.0000 20 chr14:92573082-92573102 1.0000 20 chr5:140871864-140871884 1.0000 20 chr19:18700425-18700445 1.0000 20 chr1:26202188-26202208 1.0000 20 chr6:116783291-116783311 1.0000 20 chr9:37079550-37079570 1.0000 20 chr17:38269633-38269653 1.0000 20 chr17:74731264-74731284 1.0000 20 chr9:34646563-34646583 1.0000 20 chr19:10426662-10426682 1.0000 20 chr22:45659814-45659834 1.0000 20 chr20:20433135-20433155 1.0000 20 chr17:7819248-7819268 1.0000 20 chr2:27440326-27440346 1.0000 20 chr2:10588919-10588939 1.0000 20 chr1:156251207-156251227 1.0000 20 chr1:206718293-206718313 1.0000 20 chr6:36391212-36391232 1.0000 20 chr16:4321348-4321368 1.0000 20 chr21:30257608-30257628 1.0000 20 chr5:139927236-139927256 1.0000 20 chr1:205638264-205638284 1.0000 20 chr19:47363391-47363411 1.0000 20 chr19:40324855-40324875 1.0000 20 chr2:75062124-75062144 1.0000 20 chr15:77197818-77197838 1.0000 20 chr19:10400089-10400109 1.0000 20 chr7:140098342-140098362 1.0000 20 chr2:135169747-135169767 1.0000 20 chr15:41523043-41523063 1.0000 20 chr5:160971470-160971490 1.0000 20 chr22:41418663-41418683 1.0000 20 chr11:61334849-61334869 1.0000 20 chr15:96472647-96472667 1.0000 20 chr20:42839596-42839616 1.0000 20 chr7:100025863-100025883 1.0000 20 chr1:156427258-156427278 1.0000 20 chr9:112919338-112919358 1.0000 20 chr10:99161056-99161076 1.0000 20 chr7:92462467-92462487 1.0000 20 chr19:1864275-1864295 1.0000 20 chr10:71168747-71168767 1.0000 20 chr22:45559620-45559640 1.0000 20 chr13:113864331-11386435 1.0000 20 chr1:15930175-15930195 1.0000 20 chr4:39368015-39368035 1.0000 20 chr12:120755596-12075561 1.0000 20 chr17:38264530-38264550 1.0000 20 chr5:96519557-96519577 1.0000 20 chr3:186857219-186857239 1.0000 20 chr12:104682596-10468261 1.0000 20 chr11:118757594-11875761 1.0000 20 chr11:35684686-35684706 1.0000 20 chr4:110736936-110736956 1.0000 20 chr2:113012363-113012383 1.0000 20 chr10:60027924-60027944 1.0000 20 chr1:27433220-27433240 1.0000 20 chr19:5341023-5341043 1.0000 20 chr1:28559539-28559559 1.0000 20 chr16:2041302-2041322 1.0000 20 chr3:56717409-56717429 1.0000 20 chr10:99496689-99496709 1.0000 20 chr9:117373504-117373524 1.0000 20 chr19:5680967-5680987 1.0000 20 chr6:7590401-7590421 1.0000 20 chr19:41903269-41903289 1.0000 20 chr5:172410720-172410740 1.0000 20 chr19:36545290-36545310 1.0000 20 chr10:104404730-10440475 1.0000 20 chr9:131709929-131709949 1.0000 20 chr1:155243371-155243391 1.0000 20 chr17:37558935-37558955 1.0000 20 chr3:44903334-44903354 1.0000 20 chr17:7477236-7477256 1.0000 20 chr5:170815549-170815569 1.0000 20 chr13:101241123-10124114 1.0000 20 chr15:41953004-41953024 1.0000 20 chr10:5726510-5726530 1.0000 20 chr6:43970417-43970437 1.0000 20 chr10:61666674-61666694 1.0000 20 chr8:99129477-99129497 1.0000 20 chr20:25039100-25039120 1.0000 20 chr12:6677425-6677445 1.0000 20 chr15:50647688-50647708 1.0000 20 chr5:32444911-32444931 1.0000 20 chr17:4268588-4268608 1.0000 20 chr12:101673930-10167395 1.0000 20 chr15:68522452-68522472 1.0000 20 chr1:220445908-220445928 1.0000 20 chr19:47613270-47613290 1.0000 20 chr19:18133145-18133165 1.0000 20 chr17:53315765-53315785 1.0000 20 chr19:47633970-47633990 1.0000 20 chr21:38738880-38738900 1.0000 20 chr1:154833151-154833171 1.0000 20 chr3:14165784-14165804 1.0000 20 chr1:1186479-1186499 1.0000 20 chr6:41675608-41675628 1.0000 20 chr13:115000261-11500028 1.0000 20 chr20:10652212-10652232 1.0000 20 chr14:25175301-25175321 1.0000 20 chr7:23636899-23636919 1.0000 20 chr17:79632876-79632896 1.0000 20 chr1:229761951-229761971 1.0000 20 chr11:75287666-75287686 1.0000 20 chr7:100167988-100168008 1.0000 20 chr3:122512718-122512738 1.0000 20 chr11:67250817-67250837 1.0000 20 chr1:154972361-154972381 1.0000 20 chr1:53308440-53308460 1.0000 20 chr19:925129-925149 1.0000 20 chr16:231467-231487 1.0000 20 chr16:56967005-56967025 1.0000 20 chr5:175815560-175815580 1.0000 20 chr16:71323355-71323375 1.0000 20 chr16:4466790-4466810 1.0000 20 chr1:52831872-52831892 1.0000 20 chr15:40857383-40857403 1.0000 20 chr17:81009606-81009626 1.0000 20 chr12:121342217-12134223 1.0000 20 chr2:85766919-85766939 1.0000 20 chr10:121356818-12135683 1.0000 20 chr8:124553523-124553543 1.0000 20 chr11:126081597-12608161 1.0000 20 chr19:47616442-47616462 1.0000 20 chr6:7910125-7910145 1.0000 20 chr22:42343139-42343159 1.0000 20 chr10:124767483-12476750 1.0000 20 chr1:110162351-110162371 1.0000 20 chr19:41168856-41168876 1.0000 20 chr2:25537473-25537493 1.0000 20 chr16:88923510-88923530 1.0000 20 chr2:32853209-32853229 1.0000 20 chr3:124269442-124269462 1.0000 20 chr3:52720058-52720078 1.0000 20 chr17:6939129-6939149 1.0000 20 chr10:95256374-95256394 1.0000 20 chr10:88726472-88726492 1.0000 20 chr15:44084265-44084285 1.0000 20 chr9:139258293-139258313 1.0000 20 chr17:60143346-60143366 1.0000 20 chr19:19144723-19144743 1.0000 20 chr14:91884500-91884520 1.0000 20 chr1:150293915-150293935 1.0000 20 chr12:4378592-4378612 1.0000 20 chr20:305136-305156 1.0000 20 chr5:179106264-179106284 1.0000 20 chr17:46688400-46688420 1.0000 20 chr19:572383-572403 1.0000 20 chr17:2303031-2303051 1.0000 20 chr11:120894763-12089478 1.0000 20 chr20:39657137-39657157 1.0000 20 chr4:47465706-47465726 1.0000 20 chr20:443280-443300 1.0000 20 chr12:112451143-11245116 1.0000 20 chr3:48342908-48342928 1.0000 20 chr6:24721850-24721870 1.0000 20 chr2:98612707-98612727 1.0000 20 chr6:33256934-33256954 1.0000 20 chr4:54232207-54232227 1.0000 20 chr15:41407847-41407867 1.0000 20 chr3:8809415-8809435 1.0000 20 chr17:71088838-71088858 1.0000 20 chr6:87865222-87865242 1.0000 20 chr22:31318278-31318298 1.0000 20 chr1:31191704-31191724 1.0000 20 chr5:158636786-158636806 1.0000 20 chr19:1069303-1069323 1.0000 20 chr16:30905651-30905671 1.0000 20 chr1:26232959-26232979 1.0000 20 chr7:915922-915942 1.0000 20 chr1:21059740-21059760 1.0000 20 chr20:34359769-34359789 1.0000 20 chr5:175963644-175963664 1.0000 20 chr12:51157717-51157737 1.0000 20 chr12:49463740-49463760 1.0000 20 chr5:132299333-132299353 1.0000 20 chr1:229406732-229406752 1.0000 20 chr7:72722920-72722940 1.0000 20 chr5:156698819-156698839 1.0000 20 chr17:41116405-41116425 1.0000 20 chrX:44732318-44732338 1.0000 20 chr7:154997023-154997043 1.0000 20 chr12:72148621-72148641 1.0000 20 chr19:2151868-2151888 1.0000 20 chr22:37881278-37881298 1.0000 20 chr6:30689357-30689377 1.0000 20 chr10:6205772-6205792 1.0000 20 chr22:31686846-31686866 1.0000 20 chr17:17109793-17109813 1.0000 20 chr1:173446164-173446184 1.0000 20 chr6:84937388-84937408 1.0000 20 chr6:43337515-43337535 1.0000 20 chr14:65569257-65569277 1.0000 20 chr17:38255430-38255450 1.0000 20 chrX:13671202-13671222 1.0000 20 chr12:64616062-64616082 1.0000 20 chr19:50529303-50529323 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_MAX/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/MAX.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.163 C 0.35 G 0.341 T 0.146 Background letter frequencies (from file dataset with add-one prior applied): A 0.163 C 0.35 G 0.341 T 0.146 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF BCACGTGR MEME-1 width = 8 sites = 57 llr = 444 E-value = 3.8e-054 ******************************************************************************** -------------------------------------------------------------------------------- Motif BCACGTGR MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1:a::::3 pos.-specific C 4a:a:::2 probability G 3:::a:a5 matrix T 2::::a:1 bits 2.8 * 2.5 * * 2.2 * * 1.9 * * Relative 1.7 * * Entropy 1.4 ****** (11.2 bits) 1.1 ****** 0.8 ****** 0.6 ****** 0.3 ******* 0.0 -------- Multilevel CCACGTGG consensus G A sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCACGTGR MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:72148621-72148641 1 8.07e-06 . TCACGTGA CCCGAGGTGT chr16:88923510-88923530 13 8.07e-06 CAGCGGCGGG TCACGTGA chr12:121342217-12134223 3 8.07e-06 GC TCACGTGA TGCGCGCCCC chr19:47633970-47633990 8 8.07e-06 CCCTCCG TCACGTGA CATGC chr3:44903334-44903354 3 8.07e-06 CG TCACGTGA GGCTGCCATC chr19:40324855-40324875 3 8.07e-06 CC TCACGTGA CCCACACTGA chr6:30689357-30689377 8 2.49e-05 GCCGCAG TCACGTGG AGGGC chr17:60143346-60143366 9 2.49e-05 CCTTGAGG TCACGTGG GCCC chr17:6939129-6939149 13 2.49e-05 AGTCCCCGCG TCACGTGG chr6:36391212-36391232 8 2.49e-05 ATAGAGG TCACGTGG GCCAG chr17:80455117-80455137 12 2.49e-05 CCGCCGGCCG TCACGTGG G chr17:46688400-46688420 2 4.43e-05 A CCACGTGA CCCCGCCCAC chr16:56967005-56967025 10 4.43e-05 CCCTGGCCA CCACGTGA TGA chr22:45559620-45559640 11 4.43e-05 GTTGCCGGCC CCACGTGA GC chr20:39657137-39657157 5 8.47e-05 CCCA CCACGTGG CTGCGCGG chr10:124767483-12476750 13 8.47e-05 TCTAAGCAGG CCACGTGG chr17:81009606-81009626 6 8.47e-05 ACCTA CCACGTGG GCCTGCA chr11:118757594-11875761 10 8.47e-05 ACAGCCCGT CCACGTGG ACC chr10:99161056-99161076 3 8.47e-05 AC CCACGTGG ATACCCTGTA chr1:206718293-206718313 5 8.47e-05 ATGA CCACGTGG GGGAGCCA chr9:37079550-37079570 4 8.47e-05 CCG CCACGTGG CACTGGGAA chr19:10138582-10138602 8 8.47e-05 CGAGAGG CCACGTGG ACTTG chr11:119252527-11925254 5 8.47e-05 AGAA CCACGTGG AGGAAAAG chr16:58549349-58549369 5 8.47e-05 GGCA CCACGTGG TTCCGGCG chr3:97690817-97690837 8 8.47e-05 GCGCAGC CCACGTGG AAGCC chr6:87865222-87865242 13 1.04e-04 AGCGCGCCCG GCACGTGA chr19:18133145-18133165 8 1.04e-04 gggctgg gcacgtga tcctg chr12:101673930-10167395 3 1.04e-04 CC GCACGTGA GAAAGTCTGG chr15:68522452-68522472 10 1.43e-04 CGTGGTGCA GCACGTGG GTT chr9:117373504-117373524 10 1.43e-04 AGATGCCGT GCACGTGG TCG chr19:5341023-5341043 8 1.43e-04 CGCGGGA GCACGTGG GGCGC chr4:110736936-110736956 12 1.43e-04 GGCCAGAGGG GCACGTGG C chr1:156427258-156427278 13 1.43e-04 CTTTTATGGG GCACGTGG chr16:4321348-4321368 3 1.43e-04 GA GCACGTGG CTCCAGCCCT chr16:4588910-4588930 4 1.43e-04 TGA GCACGTGG GATGGTCGG chr9:139844587-139844607 5 1.60e-04 GAGG TCACGTGC CCACCCTC chr14:92573082-92573102 1 1.69e-04 . ACACGTGA CCTTGGTAGC chr17:71088838-71088858 10 1.88e-04 CCCTCCCGC ACACGTGG CCC chr4:54232207-54232227 5 1.88e-04 CAGT ACACGTGG TCGGCCTC chr6:24721850-24721870 6 2.37e-04 CCCCG CCACGTGC GCAGGCA chr16:2041302-2041322 4 2.37e-04 CCA CCACGTGC AGGAAGCTG chr6:151187462-151187482 5 2.37e-04 GGCT CCACGTGC GCAGCCGG chr22:31318278-31318298 1 2.77e-04 . GCACGTGC GGCGCGCCAG chr7:23636899-23636919 8 2.77e-04 GCTGGAA GCACGTGC CGCCG chr10:99496689-99496709 12 2.77e-04 GGGTCGCCAA GCACGTGC T chr20:42839596-42839616 11 2.77e-04 CCCCTCAGAA GCACGTGC GC chr2:85766919-85766939 11 2.95e-04 GCAGCGGCGA CCACGTGT TT chr19:50393426-50393446 5 2.95e-04 CCGA CCACGTGT ACGAGGCC chr14:106267694-10626771 4 2.95e-04 ACA CCACGTGT CTGACCAAG chr11:120894763-12089478 4 3.31e-04 GTG ACACGTGC GGCGGGGTC chr1:154833151-154833171 9 3.31e-04 CATGTTCC ACACGTGC TCTC chr17:38264530-38264550 4 3.61e-04 GGG TCACATGG CCCGGGCAT chr5:132299333-132299353 9 3.69e-04 CCGTGCCA CCATGTGA CCAA chr1:53169072-53169092 8 4.72e-04 TTGCACA TCACGTAG TCCCC chr2:32853209-32853229 1 4.98e-04 . GCACATGG AATTCTAGGG chr1:173446164-173446184 11 5.36e-04 TTCCAGGGGG CAACGTGA CC chr1:158985401-158985421 8 7.03e-04 ACAGGAA GCATGTGC TCAGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCACGTGR MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:72148621-72148641 8.1e-06 [+1]_12 chr16:88923510-88923530 8.1e-06 12_[+1] chr12:121342217-12134223 8.1e-06 2_[+1]_10 chr19:47633970-47633990 8.1e-06 7_[+1]_5 chr3:44903334-44903354 8.1e-06 2_[+1]_10 chr19:40324855-40324875 8.1e-06 2_[+1]_10 chr6:30689357-30689377 2.5e-05 7_[+1]_5 chr17:60143346-60143366 2.5e-05 8_[+1]_4 chr17:6939129-6939149 2.5e-05 12_[+1] chr6:36391212-36391232 2.5e-05 7_[+1]_5 chr17:80455117-80455137 2.5e-05 11_[+1]_1 chr17:46688400-46688420 4.4e-05 1_[+1]_11 chr16:56967005-56967025 4.4e-05 9_[+1]_3 chr22:45559620-45559640 4.4e-05 10_[+1]_2 chr20:39657137-39657157 8.5e-05 4_[+1]_8 chr10:124767483-12476750 8.5e-05 12_[+1] chr17:81009606-81009626 8.5e-05 5_[+1]_7 chr11:118757594-11875761 8.5e-05 9_[+1]_3 chr10:99161056-99161076 8.5e-05 2_[+1]_10 chr1:206718293-206718313 8.5e-05 4_[+1]_8 chr9:37079550-37079570 8.5e-05 3_[+1]_9 chr19:10138582-10138602 8.5e-05 7_[+1]_5 chr11:119252527-11925254 8.5e-05 4_[+1]_8 chr16:58549349-58549369 8.5e-05 4_[+1]_8 chr3:97690817-97690837 8.5e-05 7_[+1]_5 chr6:87865222-87865242 0.0001 12_[+1] chr19:18133145-18133165 0.0001 7_[+1]_5 chr12:101673930-10167395 0.0001 2_[+1]_10 chr15:68522452-68522472 0.00014 9_[+1]_3 chr9:117373504-117373524 0.00014 9_[+1]_3 chr19:5341023-5341043 0.00014 7_[+1]_5 chr4:110736936-110736956 0.00014 11_[+1]_1 chr1:156427258-156427278 0.00014 12_[+1] chr16:4321348-4321368 0.00014 2_[+1]_10 chr16:4588910-4588930 0.00014 3_[+1]_9 chr9:139844587-139844607 0.00016 4_[+1]_8 chr14:92573082-92573102 0.00017 [+1]_12 chr17:71088838-71088858 0.00019 9_[+1]_3 chr4:54232207-54232227 0.00019 4_[+1]_8 chr6:24721850-24721870 0.00024 5_[+1]_7 chr16:2041302-2041322 0.00024 3_[+1]_9 chr6:151187462-151187482 0.00024 4_[+1]_8 chr22:31318278-31318298 0.00028 [+1]_12 chr7:23636899-23636919 0.00028 7_[+1]_5 chr10:99496689-99496709 0.00028 11_[+1]_1 chr20:42839596-42839616 0.00028 10_[+1]_2 chr2:85766919-85766939 0.00029 10_[+1]_2 chr19:50393426-50393446 0.00029 4_[+1]_8 chr14:106267694-10626771 0.00029 3_[+1]_9 chr11:120894763-12089478 0.00033 3_[+1]_9 chr1:154833151-154833171 0.00033 8_[+1]_4 chr17:38264530-38264550 0.00036 3_[+1]_9 chr5:132299333-132299353 0.00037 8_[+1]_4 chr1:53169072-53169092 0.00047 7_[+1]_5 chr2:32853209-32853229 0.0005 [+1]_12 chr1:173446164-173446184 0.00054 10_[+1]_2 chr1:158985401-158985421 0.0007 7_[+1]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCACGTGR MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF BCACGTGR width=8 seqs=57 chr12:72148621-72148641 ( 1) TCACGTGA 1 chr16:88923510-88923530 ( 13) TCACGTGA 1 chr12:121342217-12134223 ( 3) TCACGTGA 1 chr19:47633970-47633990 ( 8) TCACGTGA 1 chr3:44903334-44903354 ( 3) TCACGTGA 1 chr19:40324855-40324875 ( 3) TCACGTGA 1 chr6:30689357-30689377 ( 8) TCACGTGG 1 chr17:60143346-60143366 ( 9) TCACGTGG 1 chr17:6939129-6939149 ( 13) TCACGTGG 1 chr6:36391212-36391232 ( 8) TCACGTGG 1 chr17:80455117-80455137 ( 12) TCACGTGG 1 chr17:46688400-46688420 ( 2) CCACGTGA 1 chr16:56967005-56967025 ( 10) CCACGTGA 1 chr22:45559620-45559640 ( 11) CCACGTGA 1 chr20:39657137-39657157 ( 5) CCACGTGG 1 chr10:124767483-12476750 ( 13) CCACGTGG 1 chr17:81009606-81009626 ( 6) CCACGTGG 1 chr11:118757594-11875761 ( 10) CCACGTGG 1 chr10:99161056-99161076 ( 3) CCACGTGG 1 chr1:206718293-206718313 ( 5) CCACGTGG 1 chr9:37079550-37079570 ( 4) CCACGTGG 1 chr19:10138582-10138602 ( 8) CCACGTGG 1 chr11:119252527-11925254 ( 5) CCACGTGG 1 chr16:58549349-58549369 ( 5) CCACGTGG 1 chr3:97690817-97690837 ( 8) CCACGTGG 1 chr6:87865222-87865242 ( 13) GCACGTGA 1 chr19:18133145-18133165 ( 8) GCACGTGA 1 chr12:101673930-10167395 ( 3) GCACGTGA 1 chr15:68522452-68522472 ( 10) GCACGTGG 1 chr9:117373504-117373524 ( 10) GCACGTGG 1 chr19:5341023-5341043 ( 8) GCACGTGG 1 chr4:110736936-110736956 ( 12) GCACGTGG 1 chr1:156427258-156427278 ( 13) GCACGTGG 1 chr16:4321348-4321368 ( 3) GCACGTGG 1 chr16:4588910-4588930 ( 4) GCACGTGG 1 chr9:139844587-139844607 ( 5) TCACGTGC 1 chr14:92573082-92573102 ( 1) ACACGTGA 1 chr17:71088838-71088858 ( 10) ACACGTGG 1 chr4:54232207-54232227 ( 5) ACACGTGG 1 chr6:24721850-24721870 ( 6) CCACGTGC 1 chr16:2041302-2041322 ( 4) CCACGTGC 1 chr6:151187462-151187482 ( 5) CCACGTGC 1 chr22:31318278-31318298 ( 1) GCACGTGC 1 chr7:23636899-23636919 ( 8) GCACGTGC 1 chr10:99496689-99496709 ( 12) GCACGTGC 1 chr20:42839596-42839616 ( 11) GCACGTGC 1 chr2:85766919-85766939 ( 11) CCACGTGT 1 chr19:50393426-50393446 ( 5) CCACGTGT 1 chr14:106267694-10626771 ( 4) CCACGTGT 1 chr11:120894763-12089478 ( 4) ACACGTGC 1 chr1:154833151-154833171 ( 9) ACACGTGC 1 chr17:38264530-38264550 ( 4) TCACATGG 1 chr5:132299333-132299353 ( 9) CCATGTGA 1 chr1:53169072-53169092 ( 8) TCACGTAG 1 chr2:32853209-32853229 ( 1) GCACATGG 1 chr1:173446164-173446184 ( 11) CAACGTGA 1 chr1:158985401-158985421 ( 8) GCATGTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCACGTGR MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.79183 E= 3.8e-054 -90 14 -28 75 -322 149 -1248 -1248 261 -1248 -1248 -1248 -1248 146 -1248 -206 -222 -1248 150 -1248 -1248 -1248 -1248 277 -322 -1248 153 -1248 69 -86 53 -147 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCACGTGR MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 57 E= 3.8e-054 0.087719 0.385965 0.280702 0.245614 0.017544 0.982456 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.964912 0.000000 0.035088 0.035088 0.000000 0.964912 0.000000 0.000000 0.000000 0.000000 1.000000 0.017544 0.000000 0.982456 0.000000 0.263158 0.192982 0.491228 0.052632 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCACGTGR MEME-1 regular expression -------------------------------------------------------------------------------- [CGT]CACGTG[GA] -------------------------------------------------------------------------------- Time 2.16 secs. ******************************************************************************** ******************************************************************************** MOTIF GHWTTKAT MEME-2 width = 8 sites = 3 llr = 34 E-value = 8.7e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GHWTTKAT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :33:::a: pos.-specific C :3:::::: probability G a::::3:: matrix T :37aa7:a bits 2.8 ** * 2.5 ** ** 2.2 ** ** 1.9 ** ** Relative 1.7 * *** ** Entropy 1.4 * ****** (16.5 bits) 1.1 * ****** 0.8 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GATTTTAT consensus CA G sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GHWTTKAT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:156427258-156427278 2 3.03e-06 A GCTTTTAT GGGGCACGTG chr21:38738880-38738900 4 3.70e-06 TCC GAATTTAT CCTTCACGT chr3:122512718-122512738 4 4.96e-06 TTT GTTTTGAT ACCCCGGGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GHWTTKAT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:156427258-156427278 3e-06 1_[+2]_11 chr21:38738880-38738900 3.7e-06 3_[+2]_9 chr3:122512718-122512738 5e-06 3_[+2]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GHWTTKAT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GHWTTKAT width=8 seqs=3 chr1:156427258-156427278 ( 2) GCTTTTAT 1 chr21:38738880-38738900 ( 4) GAATTTAT 1 chr3:122512718-122512738 ( 4) GTTTTGAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GHWTTKAT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.5277 E= 8.7e+002 -823 -823 155 -823 103 -7 -823 119 103 -823 -823 219 -823 -823 -823 277 -823 -823 -823 277 -823 -823 -3 219 261 -823 -823 -823 -823 -823 -823 277 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GHWTTKAT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 8.7e+002 0.000000 0.000000 1.000000 0.000000 0.333333 0.333333 0.000000 0.333333 0.333333 0.000000 0.000000 0.666667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.666667 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GHWTTKAT MEME-2 regular expression -------------------------------------------------------------------------------- G[ACT][TA]TT[TG]AT -------------------------------------------------------------------------------- Time 2.90 secs. ******************************************************************************** ******************************************************************************** MOTIF AVGAAAAG MEME-3 width = 8 sites = 4 llr = 44 E-value = 1.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AVGAAAAG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 85:aaaa: pos.-specific C :3:::::: probability G :3a::::a matrix T 3::::::: bits 2.8 2.5 **** 2.2 **** 1.9 * **** Relative 1.7 * ****** Entropy 1.4 * ****** (16.0 bits) 1.1 * ****** 0.8 * ****** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel AAGAAAAG consensus TC sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AVGAAAAG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:100025863-100025883 12 2.18e-06 TCCCGCCACC AAGAAAAG G chr3:124269442-124269462 1 4.13e-06 . TAGAAAAG CCTAGCTTTT chr12:120755596-12075561 8 1.34e-05 ACGTGAC ACGAAAAG GTAAA chr11:119252527-11925254 13 1.34e-05 AACCACGTGG AGGAAAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AVGAAAAG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:100025863-100025883 2.2e-06 11_[+3]_1 chr3:124269442-124269462 4.1e-06 [+3]_12 chr12:120755596-12075561 1.3e-05 7_[+3]_5 chr11:119252527-11925254 1.3e-05 12_[+3] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AVGAAAAG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AVGAAAAG width=8 seqs=4 chr7:100025863-100025883 ( 12) AAGAAAAG 1 chr3:124269442-124269462 ( 1) TAGAAAAG 1 chr12:120755596-12075561 ( 8) ACGAAAAG 1 chr11:119252527-11925254 ( 13) AGGAAAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AVGAAAAG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.66445 E= 1.0e+003 220 -865 -865 77 161 -48 -45 -865 -865 -865 155 -865 261 -865 -865 -865 261 -865 -865 -865 261 -865 -865 -865 261 -865 -865 -865 -865 -865 155 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AVGAAAAG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.0e+003 0.750000 0.000000 0.000000 0.250000 0.500000 0.250000 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AVGAAAAG MEME-3 regular expression -------------------------------------------------------------------------------- [AT][ACG]GAAAAG -------------------------------------------------------------------------------- Time 3.61 secs. ******************************************************************************** ******************************************************************************** MOTIF ACGTGTTG MEME-4 width = 8 sites = 2 llr = 24 E-value = 3.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACGTGTTG MEME-4 Description -------------------------------------------------------------------------------- Simplified A a::::::: pos.-specific C :a:::::: probability G ::a:a::a matrix T :::a:aa: bits 2.8 * ** 2.5 * * ** 2.2 * * ** 1.9 * * ** Relative 1.7 * ****** Entropy 1.4 ******** (17.1 bits) 1.1 ******** 0.8 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel ACGTGTTG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACGTGTTG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:915922-915942 1 7.04e-06 . ACGTGTTG CCTGCGGACC chr1:150293915-150293935 2 7.04e-06 C ACGTGTTG ggagacagcg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACGTGTTG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:915922-915942 7e-06 [+4]_12 chr1:150293915-150293935 7e-06 1_[+4]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACGTGTTG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACGTGTTG width=8 seqs=2 chr7:915922-915942 ( 1) ACGTGTTG 1 chr1:150293915-150293935 ( 2) ACGTGTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACGTGTTG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.81663 E= 3.6e+003 261 -765 -765 -765 -765 151 -765 -765 -765 -765 155 -765 -765 -765 -765 277 -765 -765 155 -765 -765 -765 -765 277 -765 -765 -765 277 -765 -765 155 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACGTGTTG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.6e+003 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACGTGTTG MEME-4 regular expression -------------------------------------------------------------------------------- ACGTGTTG -------------------------------------------------------------------------------- Time 6.43 secs. ******************************************************************************** ******************************************************************************** MOTIF CCWTTAGA MEME-5 width = 8 sites = 3 llr = 34 E-value = 2.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCWTTAGA MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::7::a3a pos.-specific C aa:::::: probability G ::::::7: matrix T ::3aa::: bits 2.8 ** 2.5 *** * 2.2 *** * 1.9 *** * Relative 1.7 **** * Entropy 1.4 ****** * (16.5 bits) 1.1 ******** 0.8 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel CCATTAGA consensus T A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCWTTAGA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr20:10652212-10652232 7 5.70e-06 TGCACC CCATTAGA GCACGT chr17:74731264-74731284 11 5.70e-06 AGCTTACCTT CCATTAAA GT chr15:96472647-96472667 9 1.08e-05 TGCAAGCA CCTTTAGA ATAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCWTTAGA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr20:10652212-10652232 5.7e-06 6_[+5]_6 chr17:74731264-74731284 5.7e-06 10_[+5]_2 chr15:96472647-96472667 1.1e-05 8_[+5]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCWTTAGA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCWTTAGA width=8 seqs=3 chr20:10652212-10652232 ( 7) CCATTAGA 1 chr17:74731264-74731284 ( 11) CCATTAAA 1 chr15:96472647-96472667 ( 9) CCTTTAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCWTTAGA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.73854 E= 2.4e+003 -823 151 -823 -823 -823 151 -823 -823 202 -823 -823 119 -823 -823 -823 277 -823 -823 -823 277 261 -823 -823 -823 103 -823 97 -823 261 -823 -823 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCWTTAGA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 2.4e+003 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.000000 0.000000 0.333333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.333333 0.000000 0.666667 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCWTTAGA MEME-5 regular expression -------------------------------------------------------------------------------- CC[AT]TTA[GA]A -------------------------------------------------------------------------------- Time 9.08 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:158985401-158985421 2.23e-02 20 chr2:241499655-241499675 2.11e-01 20 chr14:106267694-10626771 1.45e-02 20 chr5:179499218-179499238 1.00e+00 20 chr17:56327215-56327235 9.99e-01 20 chr3:160167763-160167783 2.25e-01 20 chr4:57302561-57302581 4.24e-01 20 chr19:30335339-30335359 9.32e-01 20 chr3:184032309-184032329 9.90e-01 20 chr7:2393694-2393714 9.92e-01 20 chr2:11919459-11919479 6.37e-02 20 chr8:71581601-71581621 1.30e-01 20 chr1:53169072-53169092 4.28e-02 20 chr17:33307460-33307480 9.39e-01 20 chr12:19592234-19592254 3.68e-01 20 chr21:46961735-46961755 9.85e-01 20 chr1:1565782-1565802 2.42e-01 20 chr16:88519073-88519093 1.00e+00 20 chr18:45457867-45457887 6.65e-02 20 chr2:227656011-227656031 8.94e-01 20 chr22:43253459-43253479 1.78e-01 20 chr3:13129770-13129790 2.50e-01 20 chr8:95907970-95907990 4.52e-01 20 chr5:126112706-126112726 4.76e-01 20 chr6:151187462-151187482 1.15e-01 20 chr1:156783732-156783752 7.91e-01 20 chr21:33765260-33765280 8.95e-01 20 chr9:139844587-139844607 4.37e-02 20 chr17:36831358-36831378 9.21e-01 20 chr17:47755685-47755705 9.89e-01 20 chr16:4588910-4588930 3.40e-02 20 chr14:91580955-91580975 1.68e-02 20 chr11:118901702-11890172 9.62e-01 20 chr17:34890857-34890877 3.78e-01 20 chr17:40897161-40897181 7.62e-02 20 chr22:24823524-24823544 1.44e-01 20 chr17:80455117-80455137 3.41e-02 11_[+1(2.49e-05)]_1 chr5:68628659-68628679 4.25e-01 20 chr3:97690817-97690837 2.89e-02 7_[+1(8.47e-05)]_5 chr16:58549349-58549369 9.74e-03 4_[+1(8.47e-05)]_8 chr14:103234741-10323476 5.53e-01 20 chr3:183967373-183967393 1.92e-01 20 chr19:50393426-50393446 1.06e-02 20 chr11:119252527-11925254 2.15e-05 4_[+1(8.47e-05)]_[+3(1.34e-05)] chr22:41777449-41777469 6.00e-01 20 chr2:232328515-232328535 3.88e-01 20 chr19:10138582-10138602 2.71e-02 7_[+1(8.47e-05)]_5 chr13:95253816-95253836 6.17e-01 20 chr1:151170912-151170932 6.88e-01 20 chr2:227700597-227700617 8.19e-01 20 chr14:93799477-93799497 8.23e-01 20 chr1:38061547-38061567 9.31e-01 20 chr14:92573082-92573102 9.83e-03 20 chr5:140871864-140871884 6.68e-01 20 chr19:18700425-18700445 9.81e-01 20 chr1:26202188-26202208 1.90e-01 20 chr6:116783291-116783311 1.97e-02 20 chr9:37079550-37079570 1.95e-02 3_[+1(8.47e-05)]_9 chr17:38269633-38269653 6.02e-01 20 chr17:74731264-74731284 1.55e-03 10_[+5(5.70e-06)]_2 chr9:34646563-34646583 9.26e-01 20 chr19:10426662-10426682 1.18e-02 20 chr22:45659814-45659834 9.86e-01 20 chr20:20433135-20433155 6.98e-01 20 chr17:7819248-7819268 9.73e-01 20 chr2:27440326-27440346 1.00e+00 20 chr2:10588919-10588939 2.80e-02 20 chr1:156251207-156251227 9.52e-01 20 chr1:206718293-206718313 1.42e-02 4_[+1(8.47e-05)]_8 chr6:36391212-36391232 1.31e-02 7_[+1(2.49e-05)]_5 chr16:4321348-4321368 7.43e-02 20 chr21:30257608-30257628 9.99e-01 20 chr5:139927236-139927256 9.99e-01 20 chr1:205638264-205638284 9.55e-01 20 chr19:47363391-47363411 1.23e-01 20 chr19:40324855-40324875 8.51e-03 2_[+1(8.07e-06)]_10 chr2:75062124-75062144 7.43e-01 20 chr15:77197818-77197838 8.01e-01 20 chr19:10400089-10400109 7.21e-01 20 chr7:140098342-140098362 9.45e-01 20 chr2:135169747-135169767 1.28e-01 20 chr15:41523043-41523063 4.19e-01 20 chr5:160971470-160971490 7.68e-03 20 chr22:41418663-41418683 7.29e-01 20 chr11:61334849-61334869 4.35e-01 20 chr15:96472647-96472667 7.98e-05 8_[+5(1.08e-05)]_4 chr20:42839596-42839616 8.04e-03 20 chr7:100025863-100025883 1.58e-03 11_[+3(2.18e-06)]_1 chr1:156427258-156427278 1.11e-05 1_[+2(3.03e-06)]_11 chr9:112919338-112919358 8.07e-01 20 chr10:99161056-99161076 1.26e-02 2_[+1(8.47e-05)]_10 chr7:92462467-92462487 9.69e-01 20 chr19:1864275-1864295 5.87e-01 20 chr10:71168747-71168767 7.56e-01 20 chr22:45559620-45559640 1.75e-02 10_[+1(4.43e-05)]_2 chr13:113864331-11386435 2.89e-01 20 chr1:15930175-15930195 5.49e-01 20 chr4:39368015-39368035 2.03e-01 20 chr12:120755596-12075561 1.04e-03 7_[+3(1.34e-05)]_5 chr17:38264530-38264550 1.71e-01 20 chr5:96519557-96519577 2.07e-01 20 chr3:186857219-186857239 9.01e-01 20 chr12:104682596-10468261 2.18e-01 20 chr11:118757594-11875761 3.69e-02 9_[+1(8.47e-05)]_3 chr11:35684686-35684706 2.11e-01 20 chr4:110736936-110736956 1.35e-01 20 chr2:113012363-113012383 4.73e-01 20 chr10:60027924-60027944 9.83e-01 20 chr1:27433220-27433240 1.29e-01 20 chr19:5341023-5341043 2.98e-02 20 chr1:28559539-28559559 8.66e-01 20 chr16:2041302-2041322 1.48e-02 20 chr3:56717409-56717429 2.65e-01 20 chr10:99496689-99496709 6.48e-02 20 chr9:117373504-117373524 1.48e-02 20 chr19:5680967-5680987 9.94e-01 20 chr6:7590401-7590421 7.84e-01 20 chr19:41903269-41903289 9.51e-01 20 chr5:172410720-172410740 1.00e+00 20 chr19:36545290-36545310 9.74e-01 20 chr10:104404730-10440475 2.20e-01 20 chr9:131709929-131709949 1.00e+00 20 chr1:155243371-155243391 7.18e-01 20 chr17:37558935-37558955 1.18e-01 20 chr3:44903334-44903354 5.78e-04 2_[+1(8.07e-06)]_10 chr17:7477236-7477256 1.91e-02 20 chr5:170815549-170815569 7.42e-01 20 chr13:101241123-10124114 7.63e-01 20 chr15:41953004-41953024 5.55e-01 20 chr10:5726510-5726530 8.82e-01 20 chr6:43970417-43970437 5.77e-01 20 chr10:61666674-61666694 1.37e-02 20 chr8:99129477-99129497 9.69e-01 20 chr20:25039100-25039120 7.32e-01 20 chr12:6677425-6677445 4.63e-01 20 chr15:50647688-50647708 9.39e-01 20 chr5:32444911-32444931 6.57e-01 20 chr17:4268588-4268608 4.13e-01 20 chr12:101673930-10167395 6.33e-04 20 chr15:68522452-68522472 5.62e-02 20 chr1:220445908-220445928 4.52e-02 20 chr19:47613270-47613290 1.38e-01 20 chr19:18133145-18133165 3.06e-03 20 chr17:53315765-53315785 1.00e+00 20 chr19:47633970-47633990 4.47e-03 7_[+1(8.07e-06)]_5 chr21:38738880-38738900 1.97e-03 3_[+2(3.70e-06)]_9 chr1:154833151-154833171 1.48e-02 20 chr3:14165784-14165804 6.53e-01 20 chr1:1186479-1186499 5.33e-01 20 chr6:41675608-41675628 1.96e-01 20 chr13:115000261-11500028 7.06e-02 20 chr20:10652212-10652232 2.75e-03 6_[+5(5.70e-06)]_6 chr14:25175301-25175321 1.82e-01 20 chr7:23636899-23636919 2.51e-02 20 chr17:79632876-79632896 9.73e-01 20 chr1:229761951-229761971 9.00e-01 20 chr11:75287666-75287686 2.47e-01 20 chr7:100167988-100168008 8.67e-01 20 chr3:122512718-122512738 4.22e-04 3_[+2(4.96e-06)]_9 chr11:67250817-67250837 9.69e-01 20 chr1:154972361-154972381 9.99e-01 20 chr1:53308440-53308460 7.35e-01 20 chr19:925129-925149 3.94e-01 20 chr16:231467-231487 7.16e-01 20 chr16:56967005-56967025 1.65e-04 9_[+1(4.43e-05)]_3 chr5:175815560-175815580 3.59e-01 20 chr16:71323355-71323375 3.90e-01 20 chr16:4466790-4466810 6.63e-01 20 chr1:52831872-52831892 8.91e-01 20 chr15:40857383-40857403 2.26e-01 20 chr17:81009606-81009626 6.06e-02 5_[+1(8.47e-05)]_7 chr12:121342217-12134223 8.58e-05 2_[+1(8.07e-06)]_10 chr2:85766919-85766939 2.28e-03 12_[+4(6.09e-05)] chr10:121356818-12135683 9.99e-01 20 chr8:124553523-124553543 1.00e+00 20 chr11:126081597-12608161 8.13e-01 20 chr19:47616442-47616462 9.16e-01 20 chr6:7910125-7910145 8.50e-01 20 chr22:42343139-42343159 4.63e-01 20 chr10:124767483-12476750 2.29e-02 12_[+1(8.47e-05)] chr1:110162351-110162371 9.46e-01 20 chr19:41168856-41168876 9.96e-01 20 chr2:25537473-25537493 1.33e-01 20 chr16:88923510-88923530 2.64e-02 12_[+1(8.07e-06)] chr2:32853209-32853229 1.24e-02 20 chr3:124269442-124269462 5.46e-05 [+3(4.13e-06)]_12 chr3:52720058-52720078 9.54e-01 20 chr17:6939129-6939149 6.09e-02 12_[+1(2.49e-05)] chr10:95256374-95256394 7.78e-01 20 chr10:88726472-88726492 9.53e-01 20 chr15:44084265-44084285 9.95e-01 20 chr9:139258293-139258313 9.66e-01 20 chr17:60143346-60143366 1.57e-03 8_[+1(2.49e-05)]_4 chr19:19144723-19144743 3.89e-01 20 chr14:91884500-91884520 9.99e-01 20 chr1:150293915-150293935 5.44e-03 1_[+4(7.04e-06)]_11 chr12:4378592-4378612 2.52e-01 20 chr20:305136-305156 9.56e-01 20 chr5:179106264-179106284 1.57e-01 20 chr17:46688400-46688420 1.75e-02 1_[+1(4.43e-05)]_11 chr19:572383-572403 3.03e-01 20 chr17:2303031-2303051 9.66e-01 20 chr11:120894763-12089478 4.34e-02 20 chr20:39657137-39657157 4.55e-02 4_[+1(8.47e-05)]_8 chr4:47465706-47465726 7.10e-02 20 chr20:443280-443300 2.36e-01 20 chr12:112451143-11245116 3.66e-01 20 chr3:48342908-48342928 5.14e-01 20 chr6:24721850-24721870 1.15e-01 20 chr2:98612707-98612727 9.98e-01 20 chr6:33256934-33256954 5.54e-01 20 chr4:54232207-54232227 1.03e-02 20 chr15:41407847-41407867 9.55e-01 20 chr3:8809415-8809435 1.00e+00 20 chr17:71088838-71088858 6.06e-02 20 chr6:87865222-87865242 1.50e-01 20 chr22:31318278-31318298 4.96e-02 20 chr1:31191704-31191724 3.75e-01 20 chr5:158636786-158636806 4.08e-01 20 chr19:1069303-1069323 2.24e-01 20 chr16:30905651-30905671 4.90e-01 20 chr1:26232959-26232979 9.91e-01 20 chr7:915922-915942 5.73e-03 [+4(7.04e-06)]_12 chr1:21059740-21059760 7.42e-01 20 chr20:34359769-34359789 6.41e-01 20 chr5:175963644-175963664 1.32e-01 20 chr12:51157717-51157737 2.41e-01 20 chr12:49463740-49463760 3.64e-01 20 chr5:132299333-132299353 1.41e-02 20 chr1:229406732-229406752 9.57e-01 20 chr7:72722920-72722940 4.75e-01 20 chr5:156698819-156698839 2.28e-01 20 chr17:41116405-41116425 3.58e-01 20 chrX:44732318-44732338 3.50e-03 20 chr7:154997023-154997043 4.45e-01 20 chr12:72148621-72148641 5.39e-03 [+1(8.07e-06)]_12 chr19:2151868-2151888 3.00e-01 20 chr22:37881278-37881298 9.97e-01 20 chr6:30689357-30689377 1.73e-03 7_[+1(2.49e-05)]_5 chr10:6205772-6205792 9.38e-01 20 chr22:31686846-31686866 9.99e-01 20 chr17:17109793-17109813 5.63e-01 20 chr1:173446164-173446184 8.37e-02 20 chr6:84937388-84937408 6.45e-01 20 chr6:43337515-43337535 9.90e-01 20 chr14:65569257-65569277 9.78e-01 20 chr17:38255430-38255450 8.72e-01 20 chrX:13671202-13671222 9.37e-02 20 chr12:64616062-64616082 3.16e-01 20 chr19:50529303-50529323 1.72e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n10.farnam.hpc.yale.internal ********************************************************************************