******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/MAFK.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3:132726611-132726631 1.0000 20 chr2:136763232-136763252 1.0000 20 chr1:248171249-248171269 1.0000 20 chr19:47494643-47494663 1.0000 20 chr16:66492051-66492071 1.0000 20 chr3:120460360-120460380 1.0000 20 chr12:90369538-90369558 1.0000 20 chr4:186651700-186651720 1.0000 20 chr17:27161549-27161569 1.0000 20 chr6:130012572-130012592 1.0000 20 chrX:43696210-43696230 1.0000 20 chr10:79884115-79884135 1.0000 20 chr1:224421910-224421930 1.0000 20 chr7:119951278-119951298 1.0000 20 chr3:167776456-167776476 1.0000 20 chr6:135518394-135518414 1.0000 20 chr4:77874517-77874537 1.0000 20 chr5:37226674-37226694 1.0000 20 chr1:31392044-31392064 1.0000 20 chr20:8381327-8381347 1.0000 20 chr14:89809866-89809886 1.0000 20 chr11:46985585-46985605 1.0000 20 chr1:248229109-248229129 1.0000 20 chr6:157285370-157285390 1.0000 20 chr9:6473338-6473358 1.0000 20 chr22:24906763-24906783 1.0000 20 chr8:65481425-65481445 1.0000 20 chr2:178737220-178737240 1.0000 20 chr5:108804106-108804126 1.0000 20 chr7:20390815-20390835 1.0000 20 chr6:68203756-68203776 1.0000 20 chr19:11175589-11175609 1.0000 20 chr14:77490844-77490864 1.0000 20 chr10:30060512-30060532 1.0000 20 chr2:86094434-86094454 1.0000 20 chr2:79820778-79820798 1.0000 20 chrX:27750265-27750285 1.0000 20 chr1:119911285-119911305 1.0000 20 chr8:90143354-90143374 1.0000 20 chr7:37001528-37001548 1.0000 20 chr11:111666239-11166625 1.0000 20 chr2:182262918-182262938 1.0000 20 chr8:111931471-111931491 1.0000 20 chr2:191847174-191847194 1.0000 20 chr5:80150592-80150612 1.0000 20 chr4:69106527-69106547 1.0000 20 chr1:200596395-200596415 1.0000 20 chrX:28688384-28688404 1.0000 20 chr12:5618500-5618520 1.0000 20 chr3:150565407-150565427 1.0000 20 chr3:12794494-12794514 1.0000 20 chr18:19410674-19410694 1.0000 20 chr10:59063520-59063540 1.0000 20 chr6:12369776-12369796 1.0000 20 chr5:126167065-126167085 1.0000 20 chr4:77693759-77693779 1.0000 20 chr9:78189674-78189694 1.0000 20 chr2:189472426-189472446 1.0000 20 chr5:161029931-161029951 1.0000 20 chr2:206687518-206687538 1.0000 20 chr16:48993844-48993864 1.0000 20 chr11:71682908-71682928 1.0000 20 chr10:33690417-33690437 1.0000 20 chr6:7920306-7920326 1.0000 20 chr2:74781917-74781937 1.0000 20 chr20:33332333-33332353 1.0000 20 chr16:79098338-79098358 1.0000 20 chr8:138472414-138472434 1.0000 20 chr20:30819922-30819942 1.0000 20 chr9:75454333-75454353 1.0000 20 chr2:75718726-75718746 1.0000 20 chr13:22830428-22830448 1.0000 20 chrX:141637890-141637910 1.0000 20 chr2:61927781-61927801 1.0000 20 chr3:189294461-189294481 1.0000 20 chr3:50555427-50555447 1.0000 20 chr20:42360254-42360274 1.0000 20 chr15:26346779-26346799 1.0000 20 chrX:42885249-42885269 1.0000 20 chr10:13544506-13544526 1.0000 20 chr16:71837381-71837401 1.0000 20 chr11:90584549-90584569 1.0000 20 chr8:125489990-125490010 1.0000 20 chr1:183951478-183951498 1.0000 20 chr4:142165773-142165793 1.0000 20 chr6:25898676-25898696 1.0000 20 chr14:22456377-22456397 1.0000 20 chr13:105727304-10572732 1.0000 20 chr22:31011852-31011872 1.0000 20 chr2:6482594-6482614 1.0000 20 chr1:167087557-167087577 1.0000 20 chr15:94314848-94314868 1.0000 20 chr16:46837465-46837485 1.0000 20 chr2:185173627-185173647 1.0000 20 chr2:5243132-5243152 1.0000 20 chr5:50196977-50196997 1.0000 20 chr7:7139464-7139484 1.0000 20 chr7:89232487-89232507 1.0000 20 chrX:37976139-37976159 1.0000 20 chr17:53314721-53314741 1.0000 20 chr14:70828800-70828820 1.0000 20 chr12:14921896-14921916 1.0000 20 chr2:190896893-190896913 1.0000 20 chr12:86623728-86623748 1.0000 20 chr4:113168358-113168378 1.0000 20 chr8:59785265-59785285 1.0000 20 chr3:59739713-59739733 1.0000 20 chr3:4305910-4305930 1.0000 20 chrX:35909003-35909023 1.0000 20 chr3:162650483-162650503 1.0000 20 chr14:34934634-34934654 1.0000 20 chrX:138803323-138803343 1.0000 20 chr13:49745687-49745707 1.0000 20 chr11:85515143-85515163 1.0000 20 chr4:133680549-133680569 1.0000 20 chr8:117802087-117802107 1.0000 20 chr20:44963264-44963284 1.0000 20 chr10:115992729-11599274 1.0000 20 chr2:20191836-20191856 1.0000 20 chr6:89080044-89080064 1.0000 20 chr5:64065839-64065859 1.0000 20 chr11:26133922-26133942 1.0000 20 chr2:89888727-89888747 1.0000 20 chr9:22992967-22992987 1.0000 20 chr4:66700619-66700639 1.0000 20 chr2:45398435-45398455 1.0000 20 chrX:84600718-84600738 1.0000 20 chr11:35327519-35327539 1.0000 20 chr6:67374189-67374209 1.0000 20 chr8:17798213-17798233 1.0000 20 chr16:48718254-48718274 1.0000 20 chr10:118325230-11832525 1.0000 20 chr3:173817708-173817728 1.0000 20 chr15:37345435-37345455 1.0000 20 chr9:132717357-132717377 1.0000 20 chr1:233041268-233041288 1.0000 20 chr4:130975147-130975167 1.0000 20 chr4:10097928-10097948 1.0000 20 chr10:25480291-25480311 1.0000 20 chr14:52813675-52813695 1.0000 20 chr12:40149469-40149489 1.0000 20 chr3:77655159-77655179 1.0000 20 chr10:30049244-30049264 1.0000 20 chr11:61418737-61418757 1.0000 20 chr4:60657-60677 1.0000 20 chr14:66619176-66619196 1.0000 20 chr1:212141237-212141257 1.0000 20 chr2:191903305-191903325 1.0000 20 chr10:15407905-15407925 1.0000 20 chrX:150123604-150123624 1.0000 20 chr2:41641450-41641470 1.0000 20 chr7:67067418-67067438 1.0000 20 chr5:42555402-42555422 1.0000 20 chr2:120075319-120075339 1.0000 20 chr7:27694997-27695017 1.0000 20 chr12:6242967-6242987 1.0000 20 chr6:68618457-68618477 1.0000 20 chr10:17675531-17675551 1.0000 20 chr12:75803778-75803798 1.0000 20 chr13:106356375-10635639 1.0000 20 chr6:157871360-157871380 1.0000 20 chr8:121920845-121920865 1.0000 20 chr7:143145713-143145733 1.0000 20 chr8:11006403-11006423 1.0000 20 chr11:120952229-12095224 1.0000 20 chr12:50607988-50608008 1.0000 20 chr2:232630267-232630287 1.0000 20 chr18:14122291-14122311 1.0000 20 chr19:10762699-10762719 1.0000 20 chrX:34650733-34650753 1.0000 20 chr18:3723342-3723362 1.0000 20 chr10:62548500-62548520 1.0000 20 chr5:169766576-169766596 1.0000 20 chr1:1511884-1511904 1.0000 20 chr8:28225654-28225674 1.0000 20 chr8:118125087-118125107 1.0000 20 chr2:200568110-200568130 1.0000 20 chr5:108475319-108475339 1.0000 20 chr4:138590231-138590251 1.0000 20 chr5:76912932-76912952 1.0000 20 chr4:126611198-126611218 1.0000 20 chr13:50635040-50635060 1.0000 20 chr2:117249011-117249031 1.0000 20 chr5:155645571-155645591 1.0000 20 chr4:131048638-131048658 1.0000 20 chr12:100605671-10060569 1.0000 20 chr9:8822104-8822124 1.0000 20 chr12:121258879-12125889 1.0000 20 chr21:43666015-43666035 1.0000 20 chr17:79689692-79689712 1.0000 20 chr13:32179874-32179894 1.0000 20 chr18:9289884-9289904 1.0000 20 chr2:195604117-195604137 1.0000 20 chr10:35933299-35933319 1.0000 20 chr20:21374028-21374048 1.0000 20 chr14:80093582-80093602 1.0000 20 chr18:47434013-47434033 1.0000 20 chr16:63091441-63091461 1.0000 20 chr3:120069383-120069403 1.0000 20 chr3:142723857-142723877 1.0000 20 chr1:187429451-187429471 1.0000 20 chr6:128439774-128439794 1.0000 20 chrX:45667328-45667348 1.0000 20 chr4:18077556-18077576 1.0000 20 chr6:64321646-64321666 1.0000 20 chr20:17945449-17945469 1.0000 20 chr10:64521116-64521136 1.0000 20 chr10:84200677-84200697 1.0000 20 chr4:138551591-138551611 1.0000 20 chr11:83493560-83493580 1.0000 20 chr18:55665269-55665289 1.0000 20 chr3:50128601-50128621 1.0000 20 chr3:142974748-142974768 1.0000 20 chr7:78399784-78399804 1.0000 20 chr14:54316449-54316469 1.0000 20 chr6:101287473-101287493 1.0000 20 chr20:51100110-51100130 1.0000 20 chr19:6963648-6963668 1.0000 20 chr12:81558788-81558808 1.0000 20 chr8:101843097-101843117 1.0000 20 chr6:46201053-46201073 1.0000 20 chr8:8745361-8745381 1.0000 20 chr3:190070837-190070857 1.0000 20 chr4:102090962-102090982 1.0000 20 chr1:91590907-91590927 1.0000 20 chr11:130633330-13063335 1.0000 20 chr20:47890602-47890622 1.0000 20 chr9:102858976-102858996 1.0000 20 chr12:42100388-42100408 1.0000 20 chr10:121355012-12135503 1.0000 20 chr19:48398566-48398586 1.0000 20 chr2:67749458-67749478 1.0000 20 chr3:85212204-85212224 1.0000 20 chr16:17779489-17779509 1.0000 20 chr5:172023243-172023263 1.0000 20 chr8:111929234-111929254 1.0000 20 chr5:92695828-92695848 1.0000 20 chr14:107004317-10700433 1.0000 20 chr1:80850841-80850861 1.0000 20 chr4:178599251-178599271 1.0000 20 chr4:132391716-132391736 1.0000 20 chr17:30894315-30894335 1.0000 20 chrX:103182411-103182431 1.0000 20 chr8:57883619-57883639 1.0000 20 chr17:57782528-57782548 1.0000 20 chr13:111040978-11104099 1.0000 20 chr13:104125608-10412562 1.0000 20 chr6:122467081-122467101 1.0000 20 chr7:85150797-85150817 1.0000 20 chr18:29171239-29171259 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_MAFK/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/MAFK.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.306 C 0.207 G 0.2 T 0.287 Background letter frequencies (from file dataset with add-one prior applied): A 0.306 C 0.207 G 0.2 T 0.287 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GASTCAGC MEME-1 width = 8 sites = 148 llr = 1154 E-value = 6.7e-241 ******************************************************************************** -------------------------------------------------------------------------------- Motif GASTCAGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 281:1a:: pos.-specific C :14:9::a probability G 8:5:::9: matrix T :1:a::1: bits 2.3 2.1 * 1.9 * 1.6 **** Relative 1.4 ***** Entropy 1.2 * ***** (11.3 bits) 0.9 ** ***** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GAGTCAGC consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GASTCAGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:122467081-122467101 6 9.21e-06 ACACT GAGTCAGC ATTTCTT chr5:92695828-92695848 11 9.21e-06 AAGGAAGGCT GAGTCAGC AA chr1:91590907-91590927 7 9.21e-06 attgct gagtcagc acatgg chr14:54316449-54316469 13 9.21e-06 CCATTTTGCT GAGTCAGC chr18:55665269-55665289 5 9.21e-06 TGCT GAGTCAGC ATCTGCAA chr13:32179874-32179894 9 9.21e-06 ATAAAGCT GAGTCAGC AACT chr17:79689692-79689712 13 9.21e-06 GGACCCTGCT GAGTCAGC chr5:76912932-76912952 4 9.21e-06 GCT GAGTcagc actgtccaa chr2:200568110-200568130 6 9.21e-06 ttgat gagtcagc atgaaaa chr8:118125087-118125107 11 9.21e-06 CAGTTTTGCG GAGTCAGC AC chr5:169766576-169766596 11 9.21e-06 GAGCTCTGCT GAGTCAGC AA chr10:17675531-17675551 5 9.21e-06 TGCT GAGTCAGC AGAATCAA chr12:6242967-6242987 12 9.21e-06 ctttattgct gagtcagc a chr1:212141237-212141257 7 9.21e-06 GTTGCT GAGTCAGC ATCAAA chr14:66619176-66619196 13 9.21e-06 TGGAACTGAT GAGTCAGC chr11:61418737-61418757 12 9.21e-06 GAGACCTGCT GAGTCAGC A chr10:118325230-11832525 12 9.21e-06 ACATCTCGCt gagtcagc g chr2:45398435-45398455 6 9.21e-06 GTGCT GAGTCAGC AAAAACG chr9:22992967-22992987 1 9.21e-06 . gagtcagc ataatcatgt chr20:44963264-44963284 11 9.21e-06 AAGGTTTGCT GAGTCAGC AC chr13:49745687-49745707 4 9.21e-06 GCT GAGTCAGC AGTCTCAGG chr3:162650483-162650503 4 9.21e-06 GCT GAGTCAGC CAAATTAGA chr3:4305910-4305930 1 9.21e-06 . GAGTCAGC ATCTTTCTAG chr2:61927781-61927801 3 9.21e-06 CT GAGTcagc ggtatgccgg chr2:74781917-74781937 3 9.21e-06 CA GAGTCAGC GCTTTGGGAC chr11:71682908-71682928 9 9.21e-06 gcattgct gagtcagc gaat chr4:77693759-77693779 2 9.21e-06 T GAGTCAGC TTCCTTATCT chr6:12369776-12369796 8 9.21e-06 TTCTGCT GAGTCAGC AGTGT chr12:5618500-5618520 7 9.21e-06 tatgtt gagtcagc aaaaaa chr4:69106527-69106547 13 9.21e-06 AATTTTTGCT GAGTCAGC chr8:90143354-90143374 12 9.21e-06 gatgaatgct gagtcagc a chr5:108804106-108804126 9 9.21e-06 aaaatgat gagtcagc aaag chr2:178737220-178737240 8 9.21e-06 AAGTGAT GAGTCAGC AAAAC chr22:24906763-24906783 7 9.21e-06 TTTGCT GAGTCAGC AGAGGA chr1:248229109-248229129 1 9.21e-06 . gagtcagc atgtttatta chr1:31392044-31392064 6 9.21e-06 cagct gagtcagc agtttcc chr5:37226674-37226694 3 9.21e-06 CT GAGTCAGC AAAAGTTTTA chr1:224421910-224421930 4 9.21e-06 GCT GAGTCAGC ACAGTTCTG chr3:132726611-132726631 2 9.21e-06 T GAGTCAGC ATAAAAATCC chr17:30894315-30894335 8 1.87e-05 agatgct gactcagc gaatg chr21:43666015-43666035 11 1.87e-05 AGAAAGTGCT GACTCAGC AG chr12:100605671-10060569 1 1.87e-05 . GACTCAGC AATACTTAAT chr2:41641450-41641470 5 1.87e-05 TGCT GACTCAGC GATTGTCA chr10:15407905-15407925 11 1.87e-05 TACATATGCT GACTCAGC TG chr4:10097928-10097948 5 1.87e-05 AGCT GACTCAGC ATTACTCA chr9:132717357-132717377 2 1.87e-05 t gactcagc aaaacagagg chrX:138803323-138803343 13 1.87e-05 ccataatgat gactcagc chr14:34934634-34934654 9 1.87e-05 agattgat gactcagc attt chr14:70828800-70828820 7 1.87e-05 AATGCT GACTCAGC TATCTT chr7:7139464-7139484 3 1.87e-05 CT GACTCAGC TTCTGTTCCA chr15:94314848-94314868 1 1.87e-05 . GACTCAGC AACTTCTTCC chr14:22456377-22456397 10 1.87e-05 GAGATAGCT GACTCAGC GAA chr11:90584549-90584569 8 1.87e-05 ttctgct gactcagc acttg chr3:189294461-189294481 11 1.87e-05 TGcatttgct gactcagc aa chr9:75454333-75454353 4 1.87e-05 GAT GACTCAGC AGTTATGAA chr16:48993844-48993864 11 1.87e-05 CCACTCTGCT GACTCAGC AT chr2:189472426-189472446 7 1.87e-05 catgct gactcagc agttct chr7:37001528-37001548 13 1.87e-05 AAAAAATCCT GACTCAGC chr2:79820778-79820798 13 1.87e-05 CTGAAATGCT GACTCAGC chr2:86094434-86094454 10 1.87e-05 agtcttgct gactcagc att chr11:46985585-46985605 1 1.87e-05 . gactcagc agttttctat chrX:43696210-43696230 11 1.87e-05 TGTAATTGAT GACTCAGC AA chr17:27161549-27161569 6 1.87e-05 ttgct gactcagc caaattg chr4:186651700-186651720 7 1.87e-05 ACTGAT GACTCAGC ATTTCT chr7:78399784-78399804 10 3.28e-05 AGAAATGCC AAGTCAGC AGA chr16:63091441-63091461 3 3.28e-05 CT AAGTCAGC ATTAATAAGA chr5:126167065-126167085 7 3.28e-05 TGTGCC AAGTCAGC ATTTTC chr1:200596395-200596415 4 3.28e-05 GCC AAGTCAGC AAAAGGGTG chr1:119911285-119911305 12 3.28e-05 TAAATTTGCA AAGTCAGC A chr2:191847174-191847194 7 4.74e-05 ACTGCC AACTCAGC ACTTCT chr8:117802087-117802107 2 6.23e-05 a gtgtcagc attattgaaa chr17:53314721-53314741 5 6.23e-05 TGCT GTGTCAGC TTTATTAT chr20:8381327-8381347 4 6.23e-05 gcc gtgtcagc acaaataca chr5:64065839-64065859 1 8.24e-05 . GAATCAGC ATATTGGAGA chr11:111666239-11166625 13 8.24e-05 AGAATTTGCT GAATCAGC chr8:65481425-65481445 8 8.24e-05 AAAAGCT GAATCAGC ATTTT chr19:48398566-48398586 2 1.02e-04 T GAGTCATC ATTCTGCTAA chr10:121355012-12135503 2 1.02e-04 T GAGTCATC ACTCTTCATT chr6:46201053-46201073 13 1.02e-04 AATGTTTGCT GAGTCATC chr10:64521116-64521136 6 1.02e-04 TCGAT GAGTCATC AGAAACA chr2:20191836-20191856 13 1.02e-04 CAAAATTGAT GAGTCATC chr5:50196977-50196997 9 1.02e-04 AAACTGCT GAGTCATC ACTT chr2:6482594-6482614 1 1.02e-04 . gcctcAGC AGTATTTTTC chr7:20390815-20390835 4 1.02e-04 GCT GAGTCATC ATTTAAGAA chr10:35933299-35933319 8 1.24e-04 ATTAGCT GATTCAGC AGAAA chr11:26133922-26133942 9 1.24e-04 aaattgat gattcagc acaa chr10:115992729-11599274 3 1.24e-04 CT GATTCAGC TAATTTGCCT chr10:33690417-33690437 8 1.24e-04 AACTGCT GATTCAGC ATTTC chr5:161029931-161029951 7 1.24e-04 AGTGCT GATTCAGC AAATGT chr13:50635040-50635060 9 1.58e-04 tcatcgct gactcatc aaaa chr8:11006403-11006423 8 1.58e-04 ttatgct gagtaagc gaaac chr2:191903305-191903325 4 1.58e-04 GCT GACTCATC TTTTTTGCC chr1:167087557-167087577 3 1.58e-04 CT GACTCATC GAATACTTAA chrX:28688384-28688404 7 1.58e-04 TTTGCT GACTCATC AGTTTT chr6:130012572-130012592 8 1.58e-04 TTTTGCT GAGTAAGC AGTTT chr18:29171239-29171259 11 2.08e-04 AGAAATTGCT GACTAAGC AA chr11:83493560-83493580 3 2.08e-04 ct gactaagc agattaaaaa chr2:232630267-232630287 1 2.08e-04 . GACTAAGC ATATAATGAT chr2:67749458-67749478 4 2.35e-04 GCC TACTCAGC ATTTTCTTC chr3:142723857-142723877 3 2.35e-04 CT TACTCAGC AAAATTAGGA chr19:6963648-6963668 12 2.46e-04 AACTATTGCT GACACAGC A chr2:182262918-182262938 1 2.46e-04 . GACACAGC AAAACACAGT chr19:47494643-47494663 9 2.46e-04 GAACTGCT GACACAGC ACCT chr18:9289884-9289904 7 2.59e-04 ACTGCT GACTTAGC ACTTCT chr19:10762699-10762719 13 2.59e-04 cataactgct gacttagc chr12:75803778-75803798 3 2.59e-04 CT GACTTAGC ATTTTATTCT chrX:27750265-27750285 11 2.59e-04 gaaatctgct gacttagc aa chr4:133680549-133680569 8 2.73e-04 AATTGCT GACTCAAC AATAT chr6:25898676-25898696 10 2.73e-04 gaaaacgct gactcaac aaa chr16:71837381-71837401 12 2.73e-04 AGTTAATGCT GACTCAAC A chr20:33332333-33332353 10 2.73e-04 AGAAATGCT GACTCAAC ATT chr5:80150592-80150612 5 2.73e-04 TGCT GACTCAAC ATAAATCT chr3:173817708-173817728 2 3.01e-04 T GAGTCAGG GATTTCTTGT chr1:183951478-183951498 8 3.01e-04 AAGTGCA ACGTCAGC AAAAG chr6:135518394-135518414 6 3.01e-04 TGCTG ACGTCAGC AGTTCAA chr17:57782528-57782548 2 3.24e-04 A ATGTCAGC AATTAGGATT chr4:131048638-131048658 13 3.24e-04 tttttttgct cactcagc chr7:27694997-27695017 3 3.24e-04 tc atgtcagc aatttacttt chr5:42555402-42555422 8 3.24e-04 AACTGCC ATGTCAGC ACTTA chr2:190896893-190896913 3 3.24e-04 CA CACTCAGC ATTTTCTAAT chr7:89232487-89232507 10 3.24e-04 AAAACTGCA ATGTCAGC AAT chr2:185173627-185173647 8 3.24e-04 TTTTGTC ATGTCAGC ATATT chr3:150565407-150565427 11 3.24e-04 caaattgctg atgtcagc aa chr12:50607988-50608008 13 3.55e-04 TGAATATGCT AAATCAGC chr10:30049244-30049264 12 3.55e-04 CTTTGTGCTG AGGTCAGC A chr15:26346779-26346799 9 3.55e-04 aattgctt aggtcagc actt chr10:59063520-59063540 7 3.55e-04 TCAGCA AAATCAGC ATTCAT chr3:120460360-120460380 10 3.55e-04 TAAAATGCA AGGTCAGC ATT chr13:106356375-10635639 12 5.25e-04 ACTTTCTGCT GACGCAGC A chr4:102090962-102090982 13 5.61e-04 AAAAAATGCT GACTCAGA chr12:121258879-12125889 1 6.16e-04 . GACTGAGC AAATTCATAT chr1:187429451-187429471 6 8.16e-04 TTGCT TCGTCAGC ATTTCCA chr4:18077556-18077576 6 8.94e-04 ctgct ttgtcagc agttcct chr4:138551591-138551611 12 1.10e-03 atatattgct tagtcatc a chr20:17945449-17945469 2 1.10e-03 T GAAACAGC AGAATTTTAA chr20:51100110-51100130 12 1.31e-03 TGAAACTGCT GATACAGC A chr14:77490844-77490864 2 1.31e-03 G GCCTTAGC CCTAGAAAGA chr9:8822104-8822124 11 1.41e-03 TTGTTTTGCT TAGTAAGC AT chr6:89080044-89080064 12 1.41e-03 CAGCACTGCT TAGTAAGC A chr6:128439774-128439794 13 1.92e-03 CAAAATGATG ACATCAGC chr7:143145713-143145733 6 1.92e-03 tgctg acatcagc ataaact chr13:105727304-10572732 5 2.18e-03 GCTG AGATCAGC AAAATCTA chr6:64321646-64321666 13 2.30e-03 CAATTTTGCT GACTTAAC chr8:59785265-59785285 2 2.30e-03 g aggtcatc aaaaacaagg chr18:14122291-14122311 1 2.43e-03 . GAGTAAGG ATTTTTGTAG chr2:75718726-75718746 4 2.75e-03 CTA GATTCAGA GATGCTGAC chr2:195604117-195604137 1 2.93e-03 . acctaagc gattttggaa chr11:35327519-35327539 9 3.16e-03 CCACCTAG AGGACAGC TGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GASTCAGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:122467081-122467101 9.2e-06 5_[+1]_7 chr5:92695828-92695848 9.2e-06 10_[+1]_2 chr1:91590907-91590927 9.2e-06 6_[+1]_6 chr14:54316449-54316469 9.2e-06 12_[+1] chr18:55665269-55665289 9.2e-06 4_[+1]_8 chr13:32179874-32179894 9.2e-06 8_[+1]_4 chr17:79689692-79689712 9.2e-06 12_[+1] chr5:76912932-76912952 9.2e-06 3_[+1]_9 chr2:200568110-200568130 9.2e-06 5_[+1]_7 chr8:118125087-118125107 9.2e-06 10_[+1]_2 chr5:169766576-169766596 9.2e-06 10_[+1]_2 chr10:17675531-17675551 9.2e-06 4_[+1]_8 chr12:6242967-6242987 9.2e-06 11_[+1]_1 chr1:212141237-212141257 9.2e-06 6_[+1]_6 chr14:66619176-66619196 9.2e-06 12_[+1] chr11:61418737-61418757 9.2e-06 11_[+1]_1 chr10:118325230-11832525 9.2e-06 11_[+1]_1 chr2:45398435-45398455 9.2e-06 5_[+1]_7 chr9:22992967-22992987 9.2e-06 [+1]_12 chr20:44963264-44963284 9.2e-06 10_[+1]_2 chr13:49745687-49745707 9.2e-06 3_[+1]_9 chr3:162650483-162650503 9.2e-06 3_[+1]_9 chr3:4305910-4305930 9.2e-06 [+1]_12 chr2:61927781-61927801 9.2e-06 2_[+1]_10 chr2:74781917-74781937 9.2e-06 2_[+1]_10 chr11:71682908-71682928 9.2e-06 8_[+1]_4 chr4:77693759-77693779 9.2e-06 1_[+1]_11 chr6:12369776-12369796 9.2e-06 7_[+1]_5 chr12:5618500-5618520 9.2e-06 6_[+1]_6 chr4:69106527-69106547 9.2e-06 12_[+1] chr8:90143354-90143374 9.2e-06 11_[+1]_1 chr5:108804106-108804126 9.2e-06 8_[+1]_4 chr2:178737220-178737240 9.2e-06 7_[+1]_5 chr22:24906763-24906783 9.2e-06 6_[+1]_6 chr1:248229109-248229129 9.2e-06 [+1]_12 chr1:31392044-31392064 9.2e-06 5_[+1]_7 chr5:37226674-37226694 9.2e-06 2_[+1]_10 chr1:224421910-224421930 9.2e-06 3_[+1]_9 chr3:132726611-132726631 9.2e-06 1_[+1]_11 chr17:30894315-30894335 1.9e-05 7_[+1]_5 chr21:43666015-43666035 1.9e-05 10_[+1]_2 chr12:100605671-10060569 1.9e-05 [+1]_12 chr2:41641450-41641470 1.9e-05 4_[+1]_8 chr10:15407905-15407925 1.9e-05 10_[+1]_2 chr4:10097928-10097948 1.9e-05 4_[+1]_8 chr9:132717357-132717377 1.9e-05 1_[+1]_11 chrX:138803323-138803343 1.9e-05 12_[+1] chr14:34934634-34934654 1.9e-05 8_[+1]_4 chr14:70828800-70828820 1.9e-05 6_[+1]_6 chr7:7139464-7139484 1.9e-05 2_[+1]_10 chr15:94314848-94314868 1.9e-05 [+1]_12 chr14:22456377-22456397 1.9e-05 9_[+1]_3 chr11:90584549-90584569 1.9e-05 7_[+1]_5 chr3:189294461-189294481 1.9e-05 10_[+1]_2 chr9:75454333-75454353 1.9e-05 3_[+1]_9 chr16:48993844-48993864 1.9e-05 10_[+1]_2 chr2:189472426-189472446 1.9e-05 6_[+1]_6 chr7:37001528-37001548 1.9e-05 12_[+1] chr2:79820778-79820798 1.9e-05 12_[+1] chr2:86094434-86094454 1.9e-05 9_[+1]_3 chr11:46985585-46985605 1.9e-05 [+1]_12 chrX:43696210-43696230 1.9e-05 10_[+1]_2 chr17:27161549-27161569 1.9e-05 5_[+1]_7 chr4:186651700-186651720 1.9e-05 6_[+1]_6 chr7:78399784-78399804 3.3e-05 9_[+1]_3 chr16:63091441-63091461 3.3e-05 2_[+1]_10 chr5:126167065-126167085 3.3e-05 6_[+1]_6 chr1:200596395-200596415 3.3e-05 3_[+1]_9 chr1:119911285-119911305 3.3e-05 11_[+1]_1 chr2:191847174-191847194 4.7e-05 6_[+1]_6 chr8:117802087-117802107 6.2e-05 1_[+1]_11 chr17:53314721-53314741 6.2e-05 4_[+1]_8 chr20:8381327-8381347 6.2e-05 3_[+1]_9 chr5:64065839-64065859 8.2e-05 [+1]_12 chr11:111666239-11166625 8.2e-05 12_[+1] chr8:65481425-65481445 8.2e-05 7_[+1]_5 chr19:48398566-48398586 0.0001 1_[+1]_11 chr10:121355012-12135503 0.0001 1_[+1]_11 chr6:46201053-46201073 0.0001 12_[+1] chr10:64521116-64521136 0.0001 5_[+1]_7 chr2:20191836-20191856 0.0001 12_[+1] chr5:50196977-50196997 0.0001 8_[+1]_4 chr2:6482594-6482614 0.0001 [+1]_12 chr7:20390815-20390835 0.0001 3_[+1]_9 chr10:35933299-35933319 0.00012 7_[+1]_5 chr11:26133922-26133942 0.00012 8_[+1]_4 chr10:115992729-11599274 0.00012 2_[+1]_10 chr10:33690417-33690437 0.00012 7_[+1]_5 chr5:161029931-161029951 0.00012 6_[+1]_6 chr13:50635040-50635060 0.00016 8_[+1]_4 chr8:11006403-11006423 0.00016 7_[+1]_5 chr2:191903305-191903325 0.00016 3_[+1]_9 chr1:167087557-167087577 0.00016 2_[+1]_10 chrX:28688384-28688404 0.00016 6_[+1]_6 chr6:130012572-130012592 0.00016 7_[+1]_5 chr18:29171239-29171259 0.00021 10_[+1]_2 chr11:83493560-83493580 0.00021 2_[+1]_10 chr2:232630267-232630287 0.00021 [+1]_12 chr2:67749458-67749478 0.00024 3_[+1]_9 chr3:142723857-142723877 0.00024 2_[+1]_10 chr19:6963648-6963668 0.00025 11_[+1]_1 chr2:182262918-182262938 0.00025 [+1]_12 chr19:47494643-47494663 0.00025 8_[+1]_4 chr18:9289884-9289904 0.00026 6_[+1]_6 chr19:10762699-10762719 0.00026 12_[+1] chr12:75803778-75803798 0.00026 2_[+1]_10 chrX:27750265-27750285 0.00026 10_[+1]_2 chr4:133680549-133680569 0.00027 7_[+1]_5 chr6:25898676-25898696 0.00027 9_[+1]_3 chr16:71837381-71837401 0.00027 11_[+1]_1 chr20:33332333-33332353 0.00027 9_[+1]_3 chr5:80150592-80150612 0.00027 4_[+1]_8 chr3:173817708-173817728 0.0003 1_[+1]_11 chr1:183951478-183951498 0.0003 7_[+1]_5 chr6:135518394-135518414 0.0003 5_[+1]_7 chr17:57782528-57782548 0.00032 1_[+1]_11 chr4:131048638-131048658 0.00032 12_[+1] chr7:27694997-27695017 0.00032 2_[+1]_10 chr5:42555402-42555422 0.00032 7_[+1]_5 chr2:190896893-190896913 0.00032 2_[+1]_10 chr7:89232487-89232507 0.00032 9_[+1]_3 chr2:185173627-185173647 0.00032 7_[+1]_5 chr3:150565407-150565427 0.00032 10_[+1]_2 chr12:50607988-50608008 0.00036 12_[+1] chr10:30049244-30049264 0.00036 11_[+1]_1 chr15:26346779-26346799 0.00036 8_[+1]_4 chr10:59063520-59063540 0.00036 6_[+1]_6 chr3:120460360-120460380 0.00036 9_[+1]_3 chr13:106356375-10635639 0.00052 11_[+1]_1 chr4:102090962-102090982 0.00056 12_[+1] chr12:121258879-12125889 0.00062 [+1]_12 chr1:187429451-187429471 0.00082 5_[+1]_7 chr4:18077556-18077576 0.00089 5_[+1]_7 chr4:138551591-138551611 0.0011 11_[+1]_1 chr20:17945449-17945469 0.0011 1_[+1]_11 chr20:51100110-51100130 0.0013 11_[+1]_1 chr14:77490844-77490864 0.0013 1_[+1]_11 chr9:8822104-8822124 0.0014 10_[+1]_2 chr6:89080044-89080064 0.0014 11_[+1]_1 chr6:128439774-128439794 0.0019 12_[+1] chr7:143145713-143145733 0.0019 5_[+1]_7 chr13:105727304-10572732 0.0022 4_[+1]_8 chr6:64321646-64321666 0.0023 12_[+1] chr8:59785265-59785285 0.0023 1_[+1]_11 chr18:14122291-14122311 0.0024 [+1]_12 chr2:75718726-75718746 0.0028 3_[+1]_9 chr2:195604117-195604137 0.0029 [+1]_12 chr11:35327519-35327539 0.0032 8_[+1]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GASTCAGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GASTCAGC width=8 seqs=148 chr6:122467081-122467101 ( 6) GAGTCAGC 1 chr5:92695828-92695848 ( 11) GAGTCAGC 1 chr1:91590907-91590927 ( 7) GAGTCAGC 1 chr14:54316449-54316469 ( 13) GAGTCAGC 1 chr18:55665269-55665289 ( 5) GAGTCAGC 1 chr13:32179874-32179894 ( 9) GAGTCAGC 1 chr17:79689692-79689712 ( 13) GAGTCAGC 1 chr5:76912932-76912952 ( 4) GAGTCAGC 1 chr2:200568110-200568130 ( 6) GAGTCAGC 1 chr8:118125087-118125107 ( 11) GAGTCAGC 1 chr5:169766576-169766596 ( 11) GAGTCAGC 1 chr10:17675531-17675551 ( 5) GAGTCAGC 1 chr12:6242967-6242987 ( 12) GAGTCAGC 1 chr1:212141237-212141257 ( 7) GAGTCAGC 1 chr14:66619176-66619196 ( 13) GAGTCAGC 1 chr11:61418737-61418757 ( 12) GAGTCAGC 1 chr10:118325230-11832525 ( 12) GAGTCAGC 1 chr2:45398435-45398455 ( 6) GAGTCAGC 1 chr9:22992967-22992987 ( 1) GAGTCAGC 1 chr20:44963264-44963284 ( 11) GAGTCAGC 1 chr13:49745687-49745707 ( 4) GAGTCAGC 1 chr3:162650483-162650503 ( 4) GAGTCAGC 1 chr3:4305910-4305930 ( 1) GAGTCAGC 1 chr2:61927781-61927801 ( 3) GAGTCAGC 1 chr2:74781917-74781937 ( 3) GAGTCAGC 1 chr11:71682908-71682928 ( 9) GAGTCAGC 1 chr4:77693759-77693779 ( 2) GAGTCAGC 1 chr6:12369776-12369796 ( 8) GAGTCAGC 1 chr12:5618500-5618520 ( 7) GAGTCAGC 1 chr4:69106527-69106547 ( 13) GAGTCAGC 1 chr8:90143354-90143374 ( 12) GAGTCAGC 1 chr5:108804106-108804126 ( 9) GAGTCAGC 1 chr2:178737220-178737240 ( 8) GAGTCAGC 1 chr22:24906763-24906783 ( 7) GAGTCAGC 1 chr1:248229109-248229129 ( 1) GAGTCAGC 1 chr1:31392044-31392064 ( 6) GAGTCAGC 1 chr5:37226674-37226694 ( 3) GAGTCAGC 1 chr1:224421910-224421930 ( 4) GAGTCAGC 1 chr3:132726611-132726631 ( 2) GAGTCAGC 1 chr17:30894315-30894335 ( 8) GACTCAGC 1 chr21:43666015-43666035 ( 11) GACTCAGC 1 chr12:100605671-10060569 ( 1) GACTCAGC 1 chr2:41641450-41641470 ( 5) GACTCAGC 1 chr10:15407905-15407925 ( 11) GACTCAGC 1 chr4:10097928-10097948 ( 5) GACTCAGC 1 chr9:132717357-132717377 ( 2) GACTCAGC 1 chrX:138803323-138803343 ( 13) GACTCAGC 1 chr14:34934634-34934654 ( 9) GACTCAGC 1 chr14:70828800-70828820 ( 7) GACTCAGC 1 chr7:7139464-7139484 ( 3) GACTCAGC 1 chr15:94314848-94314868 ( 1) GACTCAGC 1 chr14:22456377-22456397 ( 10) GACTCAGC 1 chr11:90584549-90584569 ( 8) GACTCAGC 1 chr3:189294461-189294481 ( 11) GACTCAGC 1 chr9:75454333-75454353 ( 4) GACTCAGC 1 chr16:48993844-48993864 ( 11) GACTCAGC 1 chr2:189472426-189472446 ( 7) GACTCAGC 1 chr7:37001528-37001548 ( 13) GACTCAGC 1 chr2:79820778-79820798 ( 13) GACTCAGC 1 chr2:86094434-86094454 ( 10) GACTCAGC 1 chr11:46985585-46985605 ( 1) GACTCAGC 1 chrX:43696210-43696230 ( 11) GACTCAGC 1 chr17:27161549-27161569 ( 6) GACTCAGC 1 chr4:186651700-186651720 ( 7) GACTCAGC 1 chr7:78399784-78399804 ( 10) AAGTCAGC 1 chr16:63091441-63091461 ( 3) AAGTCAGC 1 chr5:126167065-126167085 ( 7) AAGTCAGC 1 chr1:200596395-200596415 ( 4) AAGTCAGC 1 chr1:119911285-119911305 ( 12) AAGTCAGC 1 chr2:191847174-191847194 ( 7) AACTCAGC 1 chr8:117802087-117802107 ( 2) GTGTCAGC 1 chr17:53314721-53314741 ( 5) GTGTCAGC 1 chr20:8381327-8381347 ( 4) GTGTCAGC 1 chr5:64065839-64065859 ( 1) GAATCAGC 1 chr11:111666239-11166625 ( 13) GAATCAGC 1 chr8:65481425-65481445 ( 8) GAATCAGC 1 chr19:48398566-48398586 ( 2) GAGTCATC 1 chr10:121355012-12135503 ( 2) GAGTCATC 1 chr6:46201053-46201073 ( 13) GAGTCATC 1 chr10:64521116-64521136 ( 6) GAGTCATC 1 chr2:20191836-20191856 ( 13) GAGTCATC 1 chr5:50196977-50196997 ( 9) GAGTCATC 1 chr2:6482594-6482614 ( 1) GCCTCAGC 1 chr7:20390815-20390835 ( 4) GAGTCATC 1 chr10:35933299-35933319 ( 8) GATTCAGC 1 chr11:26133922-26133942 ( 9) GATTCAGC 1 chr10:115992729-11599274 ( 3) GATTCAGC 1 chr10:33690417-33690437 ( 8) GATTCAGC 1 chr5:161029931-161029951 ( 7) GATTCAGC 1 chr13:50635040-50635060 ( 9) GACTCATC 1 chr8:11006403-11006423 ( 8) GAGTAAGC 1 chr2:191903305-191903325 ( 4) GACTCATC 1 chr1:167087557-167087577 ( 3) GACTCATC 1 chrX:28688384-28688404 ( 7) GACTCATC 1 chr6:130012572-130012592 ( 8) GAGTAAGC 1 chr18:29171239-29171259 ( 11) GACTAAGC 1 chr11:83493560-83493580 ( 3) GACTAAGC 1 chr2:232630267-232630287 ( 1) GACTAAGC 1 chr2:67749458-67749478 ( 4) TACTCAGC 1 chr3:142723857-142723877 ( 3) TACTCAGC 1 chr19:6963648-6963668 ( 12) GACACAGC 1 chr2:182262918-182262938 ( 1) GACACAGC 1 chr19:47494643-47494663 ( 9) GACACAGC 1 chr18:9289884-9289904 ( 7) GACTTAGC 1 chr19:10762699-10762719 ( 13) GACTTAGC 1 chr12:75803778-75803798 ( 3) GACTTAGC 1 chrX:27750265-27750285 ( 11) GACTTAGC 1 chr4:133680549-133680569 ( 8) GACTCAAC 1 chr6:25898676-25898696 ( 10) GACTCAAC 1 chr16:71837381-71837401 ( 12) GACTCAAC 1 chr20:33332333-33332353 ( 10) GACTCAAC 1 chr5:80150592-80150612 ( 5) GACTCAAC 1 chr3:173817708-173817728 ( 2) GAGTCAGG 1 chr1:183951478-183951498 ( 8) ACGTCAGC 1 chr6:135518394-135518414 ( 6) ACGTCAGC 1 chr17:57782528-57782548 ( 2) ATGTCAGC 1 chr4:131048638-131048658 ( 13) CACTCAGC 1 chr7:27694997-27695017 ( 3) ATGTCAGC 1 chr5:42555402-42555422 ( 8) ATGTCAGC 1 chr2:190896893-190896913 ( 3) CACTCAGC 1 chr7:89232487-89232507 ( 10) ATGTCAGC 1 chr2:185173627-185173647 ( 8) ATGTCAGC 1 chr3:150565407-150565427 ( 11) ATGTCAGC 1 chr12:50607988-50608008 ( 13) AAATCAGC 1 chr10:30049244-30049264 ( 12) AGGTCAGC 1 chr15:26346779-26346799 ( 9) AGGTCAGC 1 chr10:59063520-59063540 ( 7) AAATCAGC 1 chr3:120460360-120460380 ( 10) AGGTCAGC 1 chr13:106356375-10635639 ( 12) GACGCAGC 1 chr4:102090962-102090982 ( 13) GACTCAGA 1 chr12:121258879-12125889 ( 1) GACTGAGC 1 chr1:187429451-187429471 ( 6) TCGTCAGC 1 chr4:18077556-18077576 ( 6) TTGTCAGC 1 chr4:138551591-138551611 ( 12) TAGTCATC 1 chr20:17945449-17945469 ( 2) GAAACAGC 1 chr20:51100110-51100130 ( 12) GATACAGC 1 chr14:77490844-77490864 ( 2) GCCTTAGC 1 chr9:8822104-8822124 ( 11) TAGTAAGC 1 chr6:89080044-89080064 ( 12) TAGTAAGC 1 chr6:128439774-128439794 ( 13) ACATCAGC 1 chr7:143145713-143145733 ( 6) ACATCAGC 1 chr13:105727304-10572732 ( 5) AGATCAGC 1 chr6:64321646-64321666 ( 13) GACTTAAC 1 chr8:59785265-59785285 ( 2) AGGTCATC 1 chr18:14122291-14122311 ( 1) GAGTAAGG 1 chr2:75718726-75718746 ( 4) GATTCAGA 1 chr2:195604117-195604137 ( 1) ACCTAAGC 1 chr11:35327519-35327539 ( 9) AGGACAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GASTCAGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 5.29362 E= 6.7e-241 -86 -394 194 -260 145 -194 -231 -208 -233 87 136 -260 -292 -1385 -489 173 -233 211 -489 -282 171 -1385 -1385 -1385 -292 -1385 212 -171 -450 223 -389 -1385 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GASTCAGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 148 E= 6.7e-241 0.168919 0.013514 0.770270 0.047297 0.837838 0.054054 0.040541 0.067568 0.060811 0.378378 0.513514 0.047297 0.040541 0.000000 0.006757 0.952703 0.060811 0.891892 0.006757 0.040541 1.000000 0.000000 0.000000 0.000000 0.040541 0.000000 0.871622 0.087838 0.013514 0.972973 0.013514 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GASTCAGC MEME-1 regular expression -------------------------------------------------------------------------------- GA[GC]TCAGC -------------------------------------------------------------------------------- Time 5.13 secs. ******************************************************************************** ******************************************************************************** MOTIF WWTGCTGA MEME-2 width = 8 sites = 50 llr = 412 E-value = 1.4e-053 ******************************************************************************** -------------------------------------------------------------------------------- Motif WWTGCTGA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 53::1::9 pos.-specific C :1::9::: probability G 11:a::a: matrix T 44a::a:1 bits 2.3 * * 2.1 * * 1.9 ***** 1.6 ***** Relative 1.4 ****** Entropy 1.2 ****** (11.9 bits) 0.9 ****** 0.7 ****** 0.5 * ****** 0.2 * ****** 0.0 -------- Multilevel ATTGCTGA consensus TA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WWTGCTGA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr8:57883619-57883639 5 1.83e-05 AAGA ATTGCTGA CTTAGTAT chr8:28225654-28225674 8 1.83e-05 ATGGATG ATTGCTGA CTTGG chr4:130975147-130975167 10 1.83e-05 TGCAACTAT ATTGCTGA CTG chr8:17798213-17798233 10 1.83e-05 AATGCTGTA ATTGCTGA CTT chr4:113168358-113168378 11 1.83e-05 GAGGGGAAAA ATTGCTGA CA chr4:77874517-77874537 10 1.83e-05 TATATGCCT ATTGCTGA CTC chr10:79884115-79884135 13 1.83e-05 TTCTTCAGAA ATTGCTGA chr13:104125608-10412562 10 3.55e-05 caggaaaaa tttgctga ctc chr16:17779489-17779509 8 3.55e-05 aaaactt tttgctga ttcag chr3:190070837-190070857 10 3.55e-05 tcattaata tttgctga gta chr10:84200677-84200697 10 3.55e-05 AGTAAATTG TTTGCTGA CTC chrX:150123604-150123624 11 3.55e-05 ccactccgga tttgctga ct chr3:77655159-77655179 11 3.55e-05 GTCTGATAAT TTTGCTGA CT chr2:89888727-89888747 4 3.55e-05 GAA TTTGCTGA CATCATCAG chr22:31011852-31011872 11 3.55e-05 TTCATCCTGA TTTGCTGA GT chrX:141637890-141637910 13 3.55e-05 GCACCCCAGC TTTGCTGA chr9:78189674-78189694 8 3.55e-05 ataaata tttgctga atCAG chr18:19410674-19410694 10 3.55e-05 TTCACTCTA TTTGCTGA TTC chr7:119951278-119951298 1 3.55e-05 . TTTGCTGA CATAAGCAGA chr12:90369538-90369558 9 3.55e-05 AGCTTAGC TTTGCTGA CTCA chr3:85212204-85212224 10 5.51e-05 GTTATATGT AATGCTGA CTC chrX:84600718-84600738 8 5.51e-05 TTCTAAA AATGCTGA CAAGG chr8:125489990-125490010 8 5.51e-05 GCAGCAT AATGCTGA GTTAG chr13:22830428-22830448 13 5.51e-05 ATATTTAAGT AATGCTGA chr2:206687518-206687538 12 5.51e-05 GAGCCTCCAA AATGCTGA C chr5:172023243-172023263 11 7.34e-05 gtgacttgcc tatgctga ct chr6:157871360-157871380 6 7.34e-05 TGAAA TATGCTGA GCTAAGC chr7:67067418-67067438 8 7.34e-05 CTTCATT TATGCTGA GTCAT chr12:40149469-40149489 2 7.34e-05 T TATGCTGA CATGACAAAA chr6:157285370-157285390 11 7.34e-05 ATATACCACA TATGCTGA AT chr20:47890602-47890622 3 8.62e-05 AA AGTGCTGA GCAAGCAGAA chr11:130633330-13063335 13 8.62e-05 ggtgacagga agtgctga chr8:111931471-111931491 11 8.62e-05 TGATCTGAGA AGTGCTGA CA chr6:68203756-68203776 8 8.62e-05 CAAAATC AGTGCTGA GTCAG chr4:126611198-126611218 9 1.11e-04 ATTCAAAA ACTGCTGA CATG chr3:167776456-167776476 8 1.11e-04 ATAATGA ACTGCTGA GTCAG chr20:21374028-21374048 13 1.24e-04 AAAGGTCACA TCTGCTGA chr12:86623728-86623748 13 1.24e-04 ACCCTCAAAT TCTGCTGA chr11:85515143-85515163 13 1.36e-04 agtatactaa gttgctga chr2:75718726-75718746 12 1.49e-04 TAGATTCAGA GATGCTGA C chr16:66492051-66492071 9 1.57e-04 AGCCTGAA GGTGCTGA GTCA chr18:3723342-3723362 9 2.51e-04 TGCTAATA TTTGATGA CTCA chr12:81558788-81558808 9 3.11e-04 ATGAGAAA AATGATGA CTCA chr3:50128601-50128621 11 3.11e-04 ATGGTATTTT AATGCTGT GT chr2:136763232-136763252 9 3.11e-04 CTCAGCAC AATGCTGT CTGT chr6:101287473-101287493 8 3.99e-04 caacaaa agtgatga ttcag chr1:1511884-1511904 12 3.99e-04 atcatctcaa agtgctgt g chr3:120069383-120069403 12 4.60e-04 GCTTTTTAAA ACTGATGA G chrX:37976139-37976159 10 4.60e-04 ACTAATTAA ACTGATGA GTC chr10:30060512-30060532 8 5.08e-04 CTGGATT CCTGCTGA CTCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WWTGCTGA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:57883619-57883639 1.8e-05 4_[+2]_8 chr8:28225654-28225674 1.8e-05 7_[+2]_5 chr4:130975147-130975167 1.8e-05 9_[+2]_3 chr8:17798213-17798233 1.8e-05 9_[+2]_3 chr4:113168358-113168378 1.8e-05 10_[+2]_2 chr4:77874517-77874537 1.8e-05 9_[+2]_3 chr10:79884115-79884135 1.8e-05 12_[+2] chr13:104125608-10412562 3.6e-05 9_[+2]_3 chr16:17779489-17779509 3.6e-05 7_[+2]_5 chr3:190070837-190070857 3.6e-05 9_[+2]_3 chr10:84200677-84200697 3.6e-05 9_[+2]_3 chrX:150123604-150123624 3.6e-05 10_[+2]_2 chr3:77655159-77655179 3.6e-05 10_[+2]_2 chr2:89888727-89888747 3.6e-05 3_[+2]_9 chr22:31011852-31011872 3.6e-05 10_[+2]_2 chrX:141637890-141637910 3.6e-05 12_[+2] chr9:78189674-78189694 3.6e-05 7_[+2]_5 chr18:19410674-19410694 3.6e-05 9_[+2]_3 chr7:119951278-119951298 3.6e-05 [+2]_12 chr12:90369538-90369558 3.6e-05 8_[+2]_4 chr3:85212204-85212224 5.5e-05 9_[+2]_3 chrX:84600718-84600738 5.5e-05 7_[+2]_5 chr8:125489990-125490010 5.5e-05 7_[+2]_5 chr13:22830428-22830448 5.5e-05 12_[+2] chr2:206687518-206687538 5.5e-05 11_[+2]_1 chr5:172023243-172023263 7.3e-05 10_[+2]_2 chr6:157871360-157871380 7.3e-05 5_[+2]_7 chr7:67067418-67067438 7.3e-05 7_[+2]_5 chr12:40149469-40149489 7.3e-05 1_[+2]_11 chr6:157285370-157285390 7.3e-05 10_[+2]_2 chr20:47890602-47890622 8.6e-05 2_[+2]_10 chr11:130633330-13063335 8.6e-05 12_[+2] chr8:111931471-111931491 8.6e-05 10_[+2]_2 chr6:68203756-68203776 8.6e-05 7_[+2]_5 chr4:126611198-126611218 0.00011 8_[+2]_4 chr3:167776456-167776476 0.00011 7_[+2]_5 chr20:21374028-21374048 0.00012 12_[+2] chr12:86623728-86623748 0.00012 12_[+2] chr11:85515143-85515163 0.00014 12_[+2] chr2:75718726-75718746 0.00015 11_[+2]_1 chr16:66492051-66492071 0.00016 8_[+2]_4 chr18:3723342-3723362 0.00025 8_[+2]_4 chr12:81558788-81558808 0.00031 8_[+2]_4 chr3:50128601-50128621 0.00031 10_[+2]_2 chr2:136763232-136763252 0.00031 8_[+2]_4 chr6:101287473-101287493 0.0004 7_[+2]_5 chr1:1511884-1511904 0.0004 11_[+2]_1 chr3:120069383-120069403 0.00046 11_[+2]_1 chrX:37976139-37976159 0.00046 9_[+2]_3 chr10:30060512-30060532 0.00051 7_[+2]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WWTGCTGA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WWTGCTGA width=8 seqs=50 chr8:57883619-57883639 ( 5) ATTGCTGA 1 chr8:28225654-28225674 ( 8) ATTGCTGA 1 chr4:130975147-130975167 ( 10) ATTGCTGA 1 chr8:17798213-17798233 ( 10) ATTGCTGA 1 chr4:113168358-113168378 ( 11) ATTGCTGA 1 chr4:77874517-77874537 ( 10) ATTGCTGA 1 chr10:79884115-79884135 ( 13) ATTGCTGA 1 chr13:104125608-10412562 ( 10) TTTGCTGA 1 chr16:17779489-17779509 ( 8) TTTGCTGA 1 chr3:190070837-190070857 ( 10) TTTGCTGA 1 chr10:84200677-84200697 ( 10) TTTGCTGA 1 chrX:150123604-150123624 ( 11) TTTGCTGA 1 chr3:77655159-77655179 ( 11) TTTGCTGA 1 chr2:89888727-89888747 ( 4) TTTGCTGA 1 chr22:31011852-31011872 ( 11) TTTGCTGA 1 chrX:141637890-141637910 ( 13) TTTGCTGA 1 chr9:78189674-78189694 ( 8) TTTGCTGA 1 chr18:19410674-19410694 ( 10) TTTGCTGA 1 chr7:119951278-119951298 ( 1) TTTGCTGA 1 chr12:90369538-90369558 ( 9) TTTGCTGA 1 chr3:85212204-85212224 ( 10) AATGCTGA 1 chrX:84600718-84600738 ( 8) AATGCTGA 1 chr8:125489990-125490010 ( 8) AATGCTGA 1 chr13:22830428-22830448 ( 13) AATGCTGA 1 chr2:206687518-206687538 ( 12) AATGCTGA 1 chr5:172023243-172023263 ( 11) TATGCTGA 1 chr6:157871360-157871380 ( 6) TATGCTGA 1 chr7:67067418-67067438 ( 8) TATGCTGA 1 chr12:40149469-40149489 ( 2) TATGCTGA 1 chr6:157285370-157285390 ( 11) TATGCTGA 1 chr20:47890602-47890622 ( 3) AGTGCTGA 1 chr11:130633330-13063335 ( 13) AGTGCTGA 1 chr8:111931471-111931491 ( 11) AGTGCTGA 1 chr6:68203756-68203776 ( 8) AGTGCTGA 1 chr4:126611198-126611218 ( 9) ACTGCTGA 1 chr3:167776456-167776476 ( 8) ACTGCTGA 1 chr20:21374028-21374048 ( 13) TCTGCTGA 1 chr12:86623728-86623748 ( 13) TCTGCTGA 1 chr11:85515143-85515163 ( 13) GTTGCTGA 1 chr2:75718726-75718746 ( 12) GATGCTGA 1 chr16:66492051-66492071 ( 9) GGTGCTGA 1 chr18:3723342-3723362 ( 9) TTTGATGA 1 chr12:81558788-81558808 ( 9) AATGATGA 1 chr3:50128601-50128621 ( 11) AATGCTGT 1 chr2:136763232-136763252 ( 9) AATGCTGT 1 chr6:101287473-101287493 ( 8) AGTGATGA 1 chr1:1511884-1511904 ( 12) AGTGCTGT 1 chr3:120069383-120069403 ( 12) ACTGATGA 1 chrX:37976139-37976159 ( 10) ACTGATGA 1 chr10:30060512-30060532 ( 8) CCTGCTGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WWTGCTGA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 5.70334 E= 1.4e-053 71 -337 -174 55 -13 -56 -52 62 -1229 -1229 -1229 180 -1229 -1229 232 -1229 -161 212 -1229 -1229 -1229 -1229 -1229 180 -1229 -1229 232 -1229 162 -1229 -1229 -225 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WWTGCTGA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 50 E= 1.4e-053 0.500000 0.020000 0.060000 0.420000 0.280000 0.140000 0.140000 0.440000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.100000 0.900000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.940000 0.000000 0.000000 0.060000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WWTGCTGA MEME-2 regular expression -------------------------------------------------------------------------------- [AT][TA]TGCTGA -------------------------------------------------------------------------------- Time 7.96 secs. ******************************************************************************** ******************************************************************************** MOTIF RWWYTGCT MEME-3 width = 8 sites = 53 llr = 315 E-value = 1.4e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif RWWYTGCT MEME-3 Description -------------------------------------------------------------------------------- Simplified A 5542:::: pos.-specific C 1213::a2 probability G 3::1:a:: matrix T 2454a::8 bits 2.3 ** 2.1 ** 1.9 *** 1.6 *** Relative 1.4 *** Entropy 1.2 *** (8.6 bits) 0.9 **** 0.7 **** 0.5 ** **** 0.2 ******** 0.0 -------- Multilevel AATTTGCT consensus GTAC C sequence T A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RWWYTGCT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:111666239-11166625 5 4.53e-05 ACAG AATTTGCT GAATCAGC chrX:27750265-27750285 3 4.53e-05 ga aatctgct gacttagcaa chr18:29171239-29171259 3 1.66e-04 AG AAATTGCT GACTAAGCAA chr19:48398566-48398586 10 1.66e-04 TGAGTCATC ATTCTGCT AAT chr20:51100110-51100130 4 1.66e-04 GTG AAACTGCT GATACAGCA chr14:54316449-54316469 5 1.66e-04 GACC ATTTTGCT GAGTCAGC chr3:142974748-142974768 6 1.66e-04 ATTCA ATTCTGCT TAATCAG chr6:64321646-64321666 5 1.66e-04 CACA ATTTTGCT GACTTAAC chr5:50196977-50196997 1 1.66e-04 . AAACTGCT GAGTCATCAC chr3:150565407-150565427 2 1.66e-04 c aaattgct gatgtcagca chr9:6473338-6473358 6 1.66e-04 tttta aaactgct aagtcag chr9:8822104-8822124 3 2.25e-04 TT GTTTTGCT TAGTAAGCAT chr19:47494643-47494663 1 2.25e-04 . GAACTGCT GACACAGCAC chr4:138551591-138551611 4 2.70e-04 aat atattgct tagtcatca chr12:50607988-50608008 5 4.01e-04 GGTG AATATGCT AAATCAGC chr16:48993844-48993864 3 4.01e-04 CC ACTCTGCT GACTCAGCAT chr1:248171249-248171269 12 4.01e-04 accatccaca aatatgct g chr5:169766576-169766596 3 4.39e-04 GA GCTCTGCT GAGTCAGCAA chr4:131048638-131048658 5 5.57e-04 tttt tttttgct cactcagc chr19:10762699-10762719 5 5.57e-04 agca taactgct gacttagc chr13:106356375-10635639 4 5.57e-04 CAC TTTCTGCT GACGCAGCA chr10:115992729-11599274 12 5.57e-04 TGATTCAGCT AATTTGCC T chr4:69106527-69106547 5 5.57e-04 GTAA TTTTTGCT GAGTCAGC chr4:102090962-102090982 5 6.67e-04 TCAA AAAATGCT GACTCAGA chr6:89080044-89080064 4 7.25e-04 TCA GCACTGCT TAGTAAGCA chr20:33332333-33332353 2 7.25e-04 A GAAATGCT GACTCAACAT chr11:71682908-71682928 1 7.25e-04 . gcattgct gagtcagcga chr2:79820778-79820798 5 7.25e-04 GGCT GAAATGCT GACTCAGC chr12:6242967-6242987 4 8.66e-04 gct ttattgct gagtcagca chr3:59739713-59739733 8 8.66e-04 AAAAATA ATTTTGCC AACTC chr14:89809866-89809886 12 8.66e-04 AGGATAATAG AACTTGCT G chr11:61418737-61418757 4 9.58e-04 TGA GACCTGCT GAGTCAGCA chr3:189294461-189294481 3 1.26e-03 TG catttgct gactcagcaa chr2:86094434-86094454 2 1.26e-03 a gtcttgct gactcagcat chrX:34650733-34650753 5 1.38e-03 CAGC ACTTTGCC TACCATTA chr21:43666015-43666035 3 1.47e-03 AG AAAGTGCT GACTCAGCAG chr19:11175589-11175609 3 1.47e-03 CG GCTCTGCC CGGGCCCAAA chr7:85150797-85150817 6 1.66e-03 GAGAA TTTTTGCC TTGTCAG chr8:101843097-101843117 7 1.66e-03 cataaa gcaatgct tgagtc chr5:155645571-155645591 10 1.66e-03 ACATGACTA TTTTTGCC TGA chr2:191903305-191903325 13 1.66e-03 TGACTCATCT TTTTTGCC chr3:50555427-50555447 12 1.66e-03 TGGGATGACA GAAGTGCT G chr17:79689692-79689712 5 1.79e-03 CTGG ACCCTGCT GAGTCAGC chr16:71837381-71837401 4 1.79e-03 TAG TTAATGCT GACTCAACA chr7:78399784-78399804 2 1.88e-03 A GAAATGCC AAGTCAGCAG chr19:6963648-6963668 4 2.04e-03 CAA CTATTGCT GACACAGCA chr5:172023243-172023263 3 2.11e-03 gt gacttgcc tatgctgact chr14:80093582-80093602 7 2.11e-03 CACCAG ATAATGCC AAGTCA chr10:15407905-15407925 3 2.22e-03 TA CATATGCT GACTCAGCTG chr4:77874517-77874537 1 2.22e-03 . TATATGCC TATTGCTGAC chr10:30049244-30049264 3 2.32e-03 CC TTTGTGCT GAGGTCAGCA chr1:119911285-119911305 4 2.83e-03 GTA AATTTGCA AAGTCAGCA chr7:89232487-89232507 2 3.23e-03 A AAACTGCA ATGTCAGCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RWWYTGCT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:111666239-11166625 4.5e-05 4_[+3]_8 chrX:27750265-27750285 4.5e-05 2_[+3]_10 chr18:29171239-29171259 0.00017 2_[+3]_10 chr19:48398566-48398586 0.00017 9_[+3]_3 chr20:51100110-51100130 0.00017 3_[+3]_9 chr14:54316449-54316469 0.00017 4_[+3]_8 chr3:142974748-142974768 0.00017 5_[+3]_7 chr6:64321646-64321666 0.00017 4_[+3]_8 chr5:50196977-50196997 0.00017 [+3]_12 chr3:150565407-150565427 0.00017 1_[+3]_11 chr9:6473338-6473358 0.00017 5_[+3]_7 chr9:8822104-8822124 0.00022 2_[+3]_10 chr19:47494643-47494663 0.00022 [+3]_12 chr4:138551591-138551611 0.00027 3_[+3]_9 chr12:50607988-50608008 0.0004 4_[+3]_8 chr16:48993844-48993864 0.0004 2_[+3]_10 chr1:248171249-248171269 0.0004 11_[+3]_1 chr5:169766576-169766596 0.00044 2_[+3]_10 chr4:131048638-131048658 0.00056 4_[+3]_8 chr19:10762699-10762719 0.00056 4_[+3]_8 chr13:106356375-10635639 0.00056 3_[+3]_9 chr10:115992729-11599274 0.00056 11_[+3]_1 chr4:69106527-69106547 0.00056 4_[+3]_8 chr4:102090962-102090982 0.00067 4_[+3]_8 chr6:89080044-89080064 0.00073 3_[+3]_9 chr20:33332333-33332353 0.00073 1_[+3]_11 chr11:71682908-71682928 0.00073 [+3]_12 chr2:79820778-79820798 0.00073 4_[+3]_8 chr12:6242967-6242987 0.00087 3_[+3]_9 chr3:59739713-59739733 0.00087 7_[+3]_5 chr14:89809866-89809886 0.00087 11_[+3]_1 chr11:61418737-61418757 0.00096 3_[+3]_9 chr3:189294461-189294481 0.0013 2_[+3]_10 chr2:86094434-86094454 0.0013 1_[+3]_11 chrX:34650733-34650753 0.0014 4_[+3]_8 chr21:43666015-43666035 0.0015 2_[+3]_10 chr19:11175589-11175609 0.0015 2_[+3]_10 chr7:85150797-85150817 0.0017 5_[+3]_7 chr8:101843097-101843117 0.0017 6_[+3]_6 chr5:155645571-155645591 0.0017 9_[+3]_3 chr2:191903305-191903325 0.0017 12_[+3] chr3:50555427-50555447 0.0017 11_[+3]_1 chr17:79689692-79689712 0.0018 4_[+3]_8 chr16:71837381-71837401 0.0018 3_[+3]_9 chr7:78399784-78399804 0.0019 1_[+3]_11 chr19:6963648-6963668 0.002 3_[+3]_9 chr5:172023243-172023263 0.0021 2_[+3]_10 chr14:80093582-80093602 0.0021 6_[+3]_6 chr10:15407905-15407925 0.0022 2_[+3]_10 chr4:77874517-77874537 0.0022 [+3]_12 chr10:30049244-30049264 0.0023 2_[+3]_10 chr1:119911285-119911305 0.0028 3_[+3]_9 chr7:89232487-89232507 0.0032 1_[+3]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RWWYTGCT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RWWYTGCT width=8 seqs=53 chr11:111666239-11166625 ( 5) AATTTGCT 1 chrX:27750265-27750285 ( 3) AATCTGCT 1 chr18:29171239-29171259 ( 3) AAATTGCT 1 chr19:48398566-48398586 ( 10) ATTCTGCT 1 chr20:51100110-51100130 ( 4) AAACTGCT 1 chr14:54316449-54316469 ( 5) ATTTTGCT 1 chr3:142974748-142974768 ( 6) ATTCTGCT 1 chr6:64321646-64321666 ( 5) ATTTTGCT 1 chr5:50196977-50196997 ( 1) AAACTGCT 1 chr3:150565407-150565427 ( 2) AAATTGCT 1 chr9:6473338-6473358 ( 6) AAACTGCT 1 chr9:8822104-8822124 ( 3) GTTTTGCT 1 chr19:47494643-47494663 ( 1) GAACTGCT 1 chr4:138551591-138551611 ( 4) ATATTGCT 1 chr12:50607988-50608008 ( 5) AATATGCT 1 chr16:48993844-48993864 ( 3) ACTCTGCT 1 chr1:248171249-248171269 ( 12) AATATGCT 1 chr5:169766576-169766596 ( 3) GCTCTGCT 1 chr4:131048638-131048658 ( 5) TTTTTGCT 1 chr19:10762699-10762719 ( 5) TAACTGCT 1 chr13:106356375-10635639 ( 4) TTTCTGCT 1 chr10:115992729-11599274 ( 12) AATTTGCC 1 chr4:69106527-69106547 ( 5) TTTTTGCT 1 chr4:102090962-102090982 ( 5) AAAATGCT 1 chr6:89080044-89080064 ( 4) GCACTGCT 1 chr20:33332333-33332353 ( 2) GAAATGCT 1 chr11:71682908-71682928 ( 1) GCATTGCT 1 chr2:79820778-79820798 ( 5) GAAATGCT 1 chr12:6242967-6242987 ( 4) TTATTGCT 1 chr3:59739713-59739733 ( 8) ATTTTGCC 1 chr14:89809866-89809886 ( 12) AACTTGCT 1 chr11:61418737-61418757 ( 4) GACCTGCT 1 chr3:189294461-189294481 ( 3) CATTTGCT 1 chr2:86094434-86094454 ( 2) GTCTTGCT 1 chrX:34650733-34650753 ( 5) ACTTTGCC 1 chr21:43666015-43666035 ( 3) AAAGTGCT 1 chr19:11175589-11175609 ( 3) GCTCTGCC 1 chr7:85150797-85150817 ( 6) TTTTTGCC 1 chr8:101843097-101843117 ( 7) GCAATGCT 1 chr5:155645571-155645591 ( 10) TTTTTGCC 1 chr2:191903305-191903325 ( 13) TTTTTGCC 1 chr3:50555427-50555447 ( 12) GAAGTGCT 1 chr17:79689692-79689712 ( 5) ACCCTGCT 1 chr16:71837381-71837401 ( 4) TTAATGCT 1 chr7:78399784-78399804 ( 2) GAAATGCC 1 chr19:6963648-6963668 ( 4) CTATTGCT 1 chr5:172023243-172023263 ( 3) GACTTGCC 1 chr14:80093582-80093602 ( 7) ATAATGCC 1 chr10:15407905-15407925 ( 3) CATATGCT 1 chr4:77874517-77874537 ( 1) TATATGCC 1 chr10:30049244-30049264 ( 3) TTTGTGCT 1 chr1:119911285-119911305 ( 4) AATTTGCA 1 chr7:89232487-89232507 ( 2) AAACTGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RWWYTGCT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.10736 E= 1.4e-005 62 -187 40 -47 68 -46 -1237 32 44 -113 -1237 78 -56 54 -182 60 -1237 -1237 -1237 180 -1237 -1237 232 -1237 -1237 227 -1237 -1237 -302 0 -1237 140 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RWWYTGCT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 53 E= 1.4e-005 0.471698 0.056604 0.264151 0.207547 0.490566 0.150943 0.000000 0.358491 0.415094 0.094340 0.000000 0.490566 0.207547 0.301887 0.056604 0.433962 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.037736 0.207547 0.000000 0.754717 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RWWYTGCT MEME-3 regular expression -------------------------------------------------------------------------------- [AGT][AT][TA][TCA]TGC[TC] -------------------------------------------------------------------------------- Time 8.84 secs. ******************************************************************************** ******************************************************************************** MOTIF CTCAGCAV MEME-4 width = 8 sites = 8 llr = 78 E-value = 1.8e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTCAGCAV MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::a::a5 pos.-specific C 8:a::a:3 probability G 3:::a::3 matrix T :a:::::: bits 2.3 * ** 2.1 * ** 1.9 ** ** 1.6 ****** Relative 1.4 ******* Entropy 1.2 ******* (14.1 bits) 0.9 ******* 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTCAGCAA consensus G C sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCAGCAV MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr14:107004317-10700433 2 1.46e-05 a ctcagcaa atcctattct chr4:60657-60677 2 1.46e-05 A CTCAGCAA TTTTATCAGA chr16:48718254-48718274 1 3.40e-05 . CTCAGCAG TCCTCAGTCC chr16:79098338-79098358 2 3.40e-05 a ctcagcac ctgCAGAACC chr6:7920306-7920326 2 3.40e-05 a ctcagcag atgtgggctg chr2:136763232-136763252 1 3.40e-05 . CTCAGCAC AATGCTGTCT chr4:132391716-132391736 2 4.81e-05 A GTCAGCAA ATTCTAAACA chr8:138472414-138472434 2 4.81e-05 A GTCAGCAA AATCCAAACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCAGCAV MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr14:107004317-10700433 1.5e-05 1_[+4]_11 chr4:60657-60677 1.5e-05 1_[+4]_11 chr16:48718254-48718274 3.4e-05 [+4]_12 chr16:79098338-79098358 3.4e-05 1_[+4]_11 chr6:7920306-7920326 3.4e-05 1_[+4]_11 chr2:136763232-136763252 3.4e-05 [+4]_12 chr4:132391716-132391736 4.8e-05 1_[+4]_11 chr8:138472414-138472434 4.8e-05 1_[+4]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCAGCAV MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTCAGCAV width=8 seqs=8 chr14:107004317-10700433 ( 2) CTCAGCAA 1 chr4:60657-60677 ( 2) CTCAGCAA 1 chr16:48718254-48718274 ( 1) CTCAGCAG 1 chr16:79098338-79098358 ( 2) CTCAGCAC 1 chr6:7920306-7920326 ( 2) CTCAGCAG 1 chr2:136763232-136763252 ( 1) CTCAGCAC 1 chr4:132391716-132391736 ( 2) GTCAGCAA 1 chr8:138472414-138472434 ( 2) GTCAGCAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCAGCAV MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.98673 E= 1.8e+001 -965 186 32 -965 -965 -965 -965 180 -965 227 -965 -965 171 -965 -965 -965 -965 -965 232 -965 -965 227 -965 -965 171 -965 -965 -965 71 27 32 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCAGCAV MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 1.8e+001 0.000000 0.750000 0.250000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.250000 0.250000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCAGCAV MEME-4 regular expression -------------------------------------------------------------------------------- [CG]TCAGCA[ACG] -------------------------------------------------------------------------------- Time 9.34 secs. ******************************************************************************** ******************************************************************************** MOTIF TGGGMTGA MEME-5 width = 8 sites = 2 llr = 22 E-value = 1.6e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGGMTGA MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::5::a pos.-specific C ::::5::: probability G :aaa::a: matrix T a::::a:: bits 2.3 *** * 2.1 *** * 1.9 **** ** 1.6 **** *** Relative 1.4 **** *** Entropy 1.2 **** *** (15.6 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGGGATGA consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGMTGA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:7920306-7920326 13 8.35e-06 tcagcagatg tgggctga chr3:50555427-50555447 2 2.07e-05 T TGGGATGA CAGAAGTGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGMTGA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:7920306-7920326 8.3e-06 12_[+5] chr3:50555427-50555447 2.1e-05 1_[+5]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGMTGA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGGMTGA width=8 seqs=2 chr6:7920306-7920326 ( 13) TGGGCTGA 1 chr3:50555427-50555447 ( 2) TGGGATGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGMTGA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.6653 E= 1.6e+004 -765 -765 -765 180 -765 -765 231 -765 -765 -765 231 -765 -765 -765 231 -765 71 127 -765 -765 -765 -765 -765 180 -765 -765 231 -765 170 -765 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGMTGA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.6e+004 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGMTGA MEME-5 regular expression -------------------------------------------------------------------------------- TGGG[AC]TGA -------------------------------------------------------------------------------- Time 9.86 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:132726611-132726631 8.71e-04 1_[+1(9.21e-06)]_11 chr2:136763232-136763252 9.73e-05 [+4(3.40e-05)]_12 chr1:248171249-248171269 1.68e-01 20 chr19:47494643-47494663 4.40e-07 20 chr16:66492051-66492071 2.70e-03 20 chr3:120460360-120460380 1.60e-03 20 chr12:90369538-90369558 9.90e-06 8_[+2(3.55e-05)]_4 chr4:186651700-186651720 1.45e-06 6_[+1(1.87e-05)]_6 chr17:27161549-27161569 2.70e-04 5_[+1(1.87e-05)]_7 chr6:130012572-130012592 7.34e-06 1_[+2(3.55e-05)]_11 chrX:43696210-43696230 1.62e-07 12_[+4(1.46e-05)] chr10:79884115-79884135 1.86e-05 12_[+2(1.83e-05)] chr1:224421910-224421930 1.26e-04 3_[+1(9.21e-06)]_9 chr7:119951278-119951298 4.38e-04 [+2(3.55e-05)]_12 chr3:167776456-167776476 3.93e-04 20 chr6:135518394-135518414 6.46e-04 7_[+4(6.68e-05)]_5 chr4:77874517-77874537 2.66e-03 9_[+2(1.83e-05)]_3 chr5:37226674-37226694 1.88e-04 2_[+1(9.21e-06)]_10 chr1:31392044-31392064 1.25e-04 5_[+1(9.21e-06)]_7 chr20:8381327-8381347 7.53e-04 3_[+1(6.23e-05)]_9 chr14:89809866-89809886 2.10e-01 20 chr11:46985585-46985605 7.72e-05 [+1(1.87e-05)]_12 chr1:248229109-248229129 9.00e-04 [+1(9.21e-06)]_12 chr6:157285370-157285390 1.20e-03 10_[+2(7.34e-05)]_2 chr9:6473338-6473358 1.55e-02 20 chr22:24906763-24906783 4.86e-08 6_[+1(9.21e-06)]_6 chr8:65481425-65481445 1.90e-04 7_[+1(8.24e-05)]_5 chr2:178737220-178737240 3.52e-07 7_[+1(9.21e-06)]_5 chr5:108804106-108804126 3.60e-07 8_[+1(9.21e-06)]_4 chr7:20390815-20390835 2.73e-02 20 chr6:68203756-68203776 7.85e-04 7_[+2(8.62e-05)]_5 chr19:11175589-11175609 2.15e-02 20 chr14:77490844-77490864 6.59e-02 20 chr10:30060512-30060532 2.02e-02 20 chr2:86094434-86094454 8.06e-08 9_[+1(1.87e-05)]_3 chr2:79820778-79820798 2.54e-06 12_[+1(1.87e-05)] chrX:27750265-27750285 3.10e-08 2_[+3(4.53e-05)]_10 chr1:119911285-119911305 1.57e-03 11_[+1(3.28e-05)]_1 chr8:90143354-90143374 1.01e-05 11_[+1(9.21e-06)]_1 chr7:37001528-37001548 2.04e-03 12_[+1(1.87e-05)] chr11:111666239-11166625 2.04e-07 6_[+2(3.55e-05)]_6 chr2:182262918-182262938 5.28e-03 20 chr8:111931471-111931491 1.50e-04 10_[+2(8.62e-05)]_2 chr2:191847174-191847194 8.43e-05 8_[+4(3.40e-05)]_4 chr5:80150592-80150612 2.99e-02 20 chr4:69106527-69106547 1.43e-07 12_[+1(9.21e-06)] chr1:200596395-200596415 4.60e-04 3_[+1(3.28e-05)]_9 chrX:28688384-28688404 4.17e-06 [+2(3.55e-05)]_12 chr12:5618500-5618520 3.57e-06 6_[+1(9.21e-06)]_6 chr3:150565407-150565427 1.06e-08 3_[+2(1.83e-05)]_1_[+4(4.81e-05)] chr3:12794494-12794514 3.68e-02 20 chr18:19410674-19410694 2.74e-04 9_[+2(3.55e-05)]_3 chr10:59063520-59063540 1.84e-02 20 chr6:12369776-12369796 1.41e-07 7_[+1(9.21e-06)]_5 chr5:126167065-126167085 6.27e-04 6_[+1(3.28e-05)]_6 chr4:77693759-77693779 2.33e-03 1_[+1(9.21e-06)]_11 chr9:78189674-78189694 1.71e-04 7_[+2(3.55e-05)]_5 chr2:189472426-189472446 8.11e-07 6_[+1(1.87e-05)]_6 chr5:161029931-161029951 9.17e-07 [+2(8.62e-05)]_12 chr2:206687518-206687538 1.25e-03 11_[+2(5.51e-05)]_1 chr16:48993844-48993864 3.72e-09 10_[+1(1.87e-05)]_2 chr11:71682908-71682928 2.17e-08 8_[+1(9.21e-06)]_4 chr10:33690417-33690437 3.20e-05 20 chr6:7920306-7920326 4.53e-06 1_[+4(3.40e-05)]_3_[+5(8.35e-06)] chr2:74781917-74781937 6.07e-04 2_[+1(9.21e-06)]_10 chr20:33332333-33332353 1.72e-06 3_[+2(5.51e-05)]_9 chr16:79098338-79098358 2.61e-03 1_[+4(3.40e-05)]_11 chr8:138472414-138472434 4.28e-02 1_[+4(4.81e-05)]_11 chr20:30819922-30819942 3.71e-02 20 chr9:75454333-75454353 1.44e-05 3_[+1(1.87e-05)]_9 chr2:75718726-75718746 1.01e-03 20 chr13:22830428-22830448 6.55e-04 12_[+2(5.51e-05)] chrX:141637890-141637910 6.19e-05 12_[+2(3.55e-05)] chr2:61927781-61927801 7.14e-05 2_[+1(9.21e-06)]_10 chr3:189294461-189294481 7.59e-10 12_[+4(1.46e-05)] chr3:50555427-50555447 9.58e-05 1_[+5(2.07e-05)]_11 chr20:42360254-42360274 8.65e-01 20 chr15:26346779-26346799 1.31e-04 10_[+4(6.68e-05)]_2 chrX:42885249-42885269 8.16e-02 20 chr10:13544506-13544526 4.23e-01 20 chr16:71837381-71837401 7.32e-05 5_[+2(5.51e-05)]_7 chr11:90584549-90584569 8.37e-08 7_[+1(1.87e-05)]_5 chr8:125489990-125490010 9.98e-04 7_[+2(5.51e-05)]_5 chr1:183951478-183951498 2.71e-03 9_[+4(4.81e-05)]_3 chr4:142165773-142165793 4.26e-02 20 chr6:25898676-25898696 1.09e-04 20 chr14:22456377-22456397 9.68e-06 9_[+1(1.87e-05)]_3 chr13:105727304-10572732 2.32e-03 20 chr22:31011852-31011872 7.08e-05 10_[+2(3.55e-05)]_2 chr2:6482594-6482614 9.82e-05 2_[+4(3.40e-05)]_10 chr1:167087557-167087577 1.71e-02 20 chr15:94314848-94314868 6.83e-05 2_[+4(1.46e-05)]_10 chr16:46837465-46837485 1.35e-01 20 chr2:185173627-185173647 1.64e-03 20 chr2:5243132-5243152 2.49e-01 20 chr5:50196977-50196997 3.38e-07 20 chr7:7139464-7139484 2.17e-04 2_[+1(1.87e-05)]_10 chr7:89232487-89232507 9.26e-05 11_[+4(4.81e-05)]_1 chrX:37976139-37976159 1.59e-02 20 chr17:53314721-53314741 6.09e-03 4_[+1(6.23e-05)]_8 chr14:70828800-70828820 1.96e-07 6_[+1(1.87e-05)]_6 chr12:14921896-14921916 1.51e-01 20 chr2:190896893-190896913 7.17e-04 4_[+4(8.05e-05)]_8 chr12:86623728-86623748 8.77e-05 20 chr4:113168358-113168378 3.00e-04 10_[+2(1.83e-05)]_2 chr8:59785265-59785285 8.52e-02 20 chr3:59739713-59739733 1.66e-01 20 chr3:4305910-4305930 5.53e-04 [+1(9.21e-06)]_12 chrX:35909003-35909023 1.89e-02 20 chr3:162650483-162650503 1.39e-03 3_[+1(9.21e-06)]_9 chr14:34934634-34934654 1.53e-06 8_[+1(1.87e-05)]_4 chrX:138803323-138803343 2.61e-04 12_[+1(1.87e-05)] chr13:49745687-49745707 1.25e-04 3_[+1(9.21e-06)]_9 chr11:85515143-85515163 1.10e-02 20 chr4:133680549-133680569 1.15e-05 1_[+2(1.83e-05)]_11 chr8:117802087-117802107 1.50e-03 1_[+1(6.23e-05)]_11 chr20:44963264-44963284 6.03e-09 10_[+1(9.21e-06)]_2 chr10:115992729-11599274 1.41e-04 20 chr2:20191836-20191856 4.22e-04 20 chr6:89080044-89080064 9.86e-04 20 chr5:64065839-64065859 1.33e-03 [+1(8.24e-05)]_12 chr11:26133922-26133942 1.21e-05 20 chr2:89888727-89888747 1.56e-06 3_[+2(3.55e-05)]_9 chr9:22992967-22992987 3.48e-04 [+1(9.21e-06)]_12 chr4:66700619-66700639 4.04e-01 20 chr2:45398435-45398455 1.88e-04 5_[+1(9.21e-06)]_7 chrX:84600718-84600738 1.27e-03 7_[+2(5.51e-05)]_5 chr11:35327519-35327539 1.73e-02 20 chr6:67374189-67374209 6.72e-01 20 chr8:17798213-17798233 8.13e-04 9_[+2(1.83e-05)]_3 chr16:48718254-48718274 1.77e-02 [+4(3.40e-05)]_12 chr10:118325230-11832525 3.99e-04 11_[+1(9.21e-06)]_1 chr3:173817708-173817728 2.37e-02 20 chr15:37345435-37345455 1.56e-01 20 chr9:132717357-132717377 7.43e-05 3_[+4(1.46e-05)]_9 chr1:233041268-233041288 5.14e-02 20 chr4:130975147-130975167 4.77e-04 9_[+2(1.83e-05)]_3 chr4:10097928-10097948 5.67e-05 4_[+1(1.87e-05)]_8 chr10:25480291-25480311 9.58e-01 20 chr14:52813675-52813695 3.15e-01 20 chr12:40149469-40149489 7.69e-03 1_[+2(7.34e-05)]_11 chr3:77655159-77655179 6.47e-05 10_[+2(3.55e-05)]_2 chr10:30049244-30049264 3.52e-06 20 chr11:61418737-61418757 8.36e-06 11_[+1(9.21e-06)]_1 chr4:60657-60677 1.03e-02 1_[+4(1.46e-05)]_11 chr14:66619176-66619196 6.40e-05 12_[+1(9.21e-06)] chr1:212141237-212141257 3.88e-06 6_[+1(9.21e-06)]_6 chr2:191903305-191903325 5.81e-03 20 chr10:15407905-15407925 3.34e-08 10_[+1(1.87e-05)]_2 chrX:150123604-150123624 2.24e-05 10_[+2(3.55e-05)]_2 chr2:41641450-41641470 6.70e-04 4_[+1(1.87e-05)]_8 chr7:67067418-67067438 6.01e-04 7_[+2(7.34e-05)]_5 chr5:42555402-42555422 8.30e-04 9_[+4(6.68e-05)]_3 chr2:120075319-120075339 2.42e-01 20 chr7:27694997-27695017 3.72e-04 4_[+4(4.81e-05)]_8 chr12:6242967-6242987 4.88e-07 11_[+1(9.21e-06)]_1 chr6:68618457-68618477 3.59e-01 20 chr10:17675531-17675551 3.76e-05 4_[+1(9.21e-06)]_8 chr12:75803778-75803798 1.37e-02 20 chr13:106356375-10635639 7.57e-06 20 chr6:157871360-157871380 4.86e-06 5_[+2(7.34e-05)]_7 chr8:121920845-121920865 3.82e-01 20 chr7:143145713-143145733 3.96e-02 20 chr8:11006403-11006423 5.29e-05 1_[+2(7.34e-05)]_11 chr11:120952229-12095224 3.41e-01 20 chr12:50607988-50608008 5.39e-04 20 chr2:232630267-232630287 1.19e-03 20 chr18:14122291-14122311 1.68e-01 20 chr19:10762699-10762719 3.97e-05 20 chrX:34650733-34650753 2.06e-01 20 chr18:3723342-3723362 1.67e-02 20 chr10:62548500-62548520 4.82e-01 20 chr5:169766576-169766596 1.38e-09 10_[+1(9.21e-06)]_2 chr1:1511884-1511904 2.57e-03 20 chr8:28225654-28225674 2.13e-03 7_[+2(1.83e-05)]_5 chr8:118125087-118125107 5.58e-07 10_[+1(9.21e-06)]_2 chr2:200568110-200568130 6.06e-04 5_[+1(9.21e-06)]_7 chr5:108475319-108475339 1.89e-01 20 chr4:138590231-138590251 6.58e-01 20 chr5:76912932-76912952 6.08e-05 3_[+1(9.21e-06)]_9 chr4:126611198-126611218 6.13e-04 20 chr13:50635040-50635060 7.21e-05 20 chr2:117249011-117249031 2.35e-01 20 chr5:155645571-155645591 7.09e-02 20 chr4:131048638-131048658 2.93e-04 20 chr12:100605671-10060569 2.98e-05 2_[+4(1.46e-05)]_10 chr9:8822104-8822124 1.60e-04 20 chr12:121258879-12125889 6.14e-03 20 chr21:43666015-43666035 2.65e-09 10_[+1(1.87e-05)]_2 chr17:79689692-79689712 8.91e-06 12_[+1(9.21e-06)] chr13:32179874-32179894 1.04e-06 8_[+1(9.21e-06)]_4 chr18:9289884-9289904 1.93e-05 20 chr2:195604117-195604137 1.12e-01 20 chr10:35933299-35933319 2.65e-05 20 chr20:21374028-21374048 9.18e-05 20 chr14:80093582-80093602 2.91e-01 20 chr18:47434013-47434033 2.60e-01 20 chr16:63091441-63091461 2.16e-03 2_[+1(3.28e-05)]_10 chr3:120069383-120069403 3.10e-02 20 chr3:142723857-142723877 3.55e-04 4_[+4(1.46e-05)]_8 chr1:187429451-187429471 1.41e-02 20 chr6:128439774-128439794 2.05e-03 20 chrX:45667328-45667348 6.26e-01 20 chr4:18077556-18077576 1.48e-03 7_[+4(6.68e-05)]_5 chr6:64321646-64321666 9.55e-06 6_[+2(3.55e-05)]_6 chr20:17945449-17945469 3.26e-02 20 chr10:64521116-64521136 1.07e-02 20 chr10:84200677-84200697 1.68e-03 9_[+2(3.55e-05)]_3 chr4:138551591-138551611 7.82e-04 20 chr11:83493560-83493580 1.74e-03 20 chr18:55665269-55665289 1.98e-04 4_[+1(9.21e-06)]_8 chr3:50128601-50128621 1.75e-02 20 chr3:142974748-142974768 3.45e-03 20 chr7:78399784-78399804 5.78e-06 9_[+1(3.28e-05)]_3 chr14:54316449-54316469 5.10e-08 12_[+1(9.21e-06)] chr6:101287473-101287493 2.19e-02 20 chr20:51100110-51100130 5.49e-05 20 chr19:6963648-6963668 3.09e-05 5_[+2(1.83e-05)]_7 chr12:81558788-81558808 3.04e-02 20 chr8:101843097-101843117 8.30e-02 20 chr6:46201053-46201073 8.08e-06 6_[+2(3.55e-05)]_6 chr8:8745361-8745381 9.95e-01 20 chr3:190070837-190070857 2.09e-04 9_[+2(3.55e-05)]_3 chr4:102090962-102090982 5.93e-05 6_[+2(5.51e-05)]_6 chr1:91590907-91590927 1.15e-07 6_[+1(9.21e-06)]_6 chr11:130633330-13063335 5.96e-05 12_[+2(8.62e-05)] chr20:47890602-47890622 7.60e-06 2_[+2(8.62e-05)]_10 chr9:102858976-102858996 5.33e-01 20 chr12:42100388-42100408 9.15e-01 20 chr10:121355012-12135503 7.35e-03 20 chr19:48398566-48398586 2.43e-05 20 chr2:67749458-67749478 1.19e-03 5_[+4(8.05e-05)]_7 chr3:85212204-85212224 1.80e-03 9_[+2(5.51e-05)]_3 chr16:17779489-17779509 4.00e-04 7_[+2(3.55e-05)]_5 chr5:172023243-172023263 6.44e-04 10_[+2(7.34e-05)]_2 chr8:111929234-111929254 3.84e-01 20 chr5:92695828-92695848 5.37e-07 10_[+1(9.21e-06)]_2 chr14:107004317-10700433 1.20e-02 1_[+4(1.46e-05)]_11 chr1:80850841-80850861 5.94e-02 20 chr4:178599251-178599271 2.61e-01 20 chr4:132391716-132391736 1.41e-02 1_[+4(4.81e-05)]_11 chr17:30894315-30894335 1.90e-06 7_[+1(1.87e-05)]_5 chrX:103182411-103182431 3.90e-01 20 chr8:57883619-57883639 8.70e-05 4_[+2(1.83e-05)]_8 chr17:57782528-57782548 8.19e-04 3_[+4(4.81e-05)]_9 chr13:111040978-11104099 9.88e-01 20 chr13:104125608-10412562 4.72e-05 9_[+2(3.55e-05)]_3 chr6:122467081-122467101 5.16e-04 5_[+1(9.21e-06)]_7 chr7:85150797-85150817 2.27e-01 20 chr18:29171239-29171259 6.35e-08 4_[+2(1.83e-05)]_8 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n10.farnam.hpc.yale.internal ********************************************************************************