******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/KLF5.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr15:40389436-40389456 1.0000 20 chr10:116852954-11685297 1.0000 20 chr20:47903696-47903716 1.0000 20 chr19:9784660-9784680 1.0000 20 chr11:68120285-68120305 1.0000 20 chr16:70100022-70100042 1.0000 20 chr13:37394555-37394575 1.0000 20 chr22:45619577-45619597 1.0000 20 chr6:160114538-160114558 1.0000 20 chr9:135285439-135285459 1.0000 20 chr22:37415609-37415629 1.0000 20 chr11:911169-911189 1.0000 20 chr8:17013372-17013392 1.0000 20 chr2:231095692-231095712 1.0000 20 chr7:2595251-2595271 1.0000 20 chr7:16685598-16685618 1.0000 20 chr8:107669966-107669986 1.0000 20 chr2:120301874-120301894 1.0000 20 chr12:56224465-56224485 1.0000 20 chr1:1677731-1677751 1.0000 20 chr1:84464937-84464957 1.0000 20 chr19:49653734-49653754 1.0000 20 chr2:86947267-86947287 1.0000 20 chr19:58708556-58708576 1.0000 20 chr20:633946-633966 1.0000 20 chr4:6060484-6060504 1.0000 20 chr9:98268292-98268312 1.0000 20 chr6:83073392-83073412 1.0000 20 chrX:49022866-49022886 1.0000 20 chr17:75632022-75632042 1.0000 20 chr16:29973138-29973158 1.0000 20 chr19:12155014-12155034 1.0000 20 chr14:67960217-67960237 1.0000 20 chr21:44394220-44394240 1.0000 20 chrX:43514005-43514025 1.0000 20 chrX:47880871-47880891 1.0000 20 chr14:52118253-52118273 1.0000 20 chr19:7083268-7083288 1.0000 20 chr8:107282302-107282322 1.0000 20 chr17:40439527-40439547 1.0000 20 chr19:12638392-12638412 1.0000 20 chr1:200860515-200860535 1.0000 20 chr3:160473082-160473102 1.0000 20 chr1:26437992-26438012 1.0000 20 chr3:151986458-151986478 1.0000 20 chr1:247320258-247320278 1.0000 20 chr19:42927430-42927450 1.0000 20 chrX:47479301-47479321 1.0000 20 chr5:150284626-150284646 1.0000 20 chr16:15068706-15068726 1.0000 20 chr22:24129751-24129771 1.0000 20 chr7:5104141-5104161 1.0000 20 chr12:113623410-11362343 1.0000 20 chr20:47897709-47897729 1.0000 20 chr11:47290812-47290832 1.0000 20 chr5:171406788-171406808 1.0000 20 chr12:106696425-10669644 1.0000 20 chrX:48858821-48858841 1.0000 20 chr10:112201601-11220162 1.0000 20 chr7:104909631-104909651 1.0000 20 chr14:56046717-56046737 1.0000 20 chr2:87303853-87303873 1.0000 20 chr19:7083469-7083489 1.0000 20 chr5:173345053-173345073 1.0000 20 chr12:1703914-1703934 1.0000 20 chr15:80208300-80208320 1.0000 20 chr1:1624454-1624474 1.0000 20 chr19:9676825-9676845 1.0000 20 chr2:86790202-86790222 1.0000 20 chr3:111578366-111578386 1.0000 20 chr1:156119460-156119480 1.0000 20 chr16:3367581-3367601 1.0000 20 chr7:102920565-102920585 1.0000 20 chr20:57464066-57464086 1.0000 20 chr20:2633145-2633165 1.0000 20 chr6:35231481-35231501 1.0000 20 chr3:79068752-79068772 1.0000 20 chr1:11539031-11539051 1.0000 20 chr19:58132285-58132305 1.0000 20 chr13:115078860-11507888 1.0000 20 chrX:47050156-47050176 1.0000 20 chrX:48755390-48755410 1.0000 20 chr7:6731575-6731595 1.0000 20 chrX:53024961-53024981 1.0000 20 chr16:3458766-3458786 1.0000 20 chr8:8216185-8216205 1.0000 20 chr18:658261-658281 1.0000 20 chr18:23670738-23670758 1.0000 20 chr1:40928932-40928952 1.0000 20 chr1:246678853-246678873 1.0000 20 chr3:127609843-127609863 1.0000 20 chr10:115720632-11572065 1.0000 20 chr16:30108448-30108468 1.0000 20 chrX:47420798-47420818 1.0000 20 chr3:187463426-187463446 1.0000 20 chr9:71788988-71789008 1.0000 20 chr16:2563780-2563800 1.0000 20 chr5:153570021-153570041 1.0000 20 chr19:2163826-2163846 1.0000 20 chrX:47225579-47225599 1.0000 20 chr7:154794969-154794989 1.0000 20 chr9:34637867-34637887 1.0000 20 chr9:130538820-130538840 1.0000 20 chr6:148663806-148663826 1.0000 20 chr12:50794405-50794425 1.0000 20 chr5:180671283-180671303 1.0000 20 chr14:58894545-58894565 1.0000 20 chr8:17941769-17941789 1.0000 20 chr17:5085525-5085545 1.0000 20 chr5:177557905-177557925 1.0000 20 chrX:129304832-129304852 1.0000 20 chr10:99094593-99094613 1.0000 20 chr21:34739917-34739937 1.0000 20 chr11:129872341-12987236 1.0000 20 chr22:39052509-39052529 1.0000 20 chrX:47077923-47077943 1.0000 20 chrX:118827279-118827299 1.0000 20 chr3:44040757-44040777 1.0000 20 chr14:100070786-10007080 1.0000 20 chr13:76112102-76112122 1.0000 20 chr19:58126905-58126925 1.0000 20 chr2:28615528-28615548 1.0000 20 chr17:7343953-7343973 1.0000 20 chr14:39736444-39736464 1.0000 20 chr19:55678290-55678310 1.0000 20 chr3:9438442-9438462 1.0000 20 chr19:44980980-44981000 1.0000 20 chr7:128761720-128761740 1.0000 20 chr19:36869958-36869978 1.0000 20 chr1:6052205-6052225 1.0000 20 chr19:42806733-42806753 1.0000 20 chr11:45921486-45921506 1.0000 20 chr1:40283046-40283066 1.0000 20 chr7:21985648-21985668 1.0000 20 chr18:13597238-13597258 1.0000 20 chr14:64184627-64184647 1.0000 20 chr7:99129169-99129189 1.0000 20 chr17:58042268-58042288 1.0000 20 chr16:31927531-31927551 1.0000 20 chr1:36621472-36621492 1.0000 20 chr8:41435907-41435927 1.0000 20 chr16:31766439-31766459 1.0000 20 chr10:82937616-82937636 1.0000 20 chr3:194406511-194406531 1.0000 20 chr7:123389170-123389190 1.0000 20 chr21:34863972-34863992 1.0000 20 chr17:7743427-7743447 1.0000 20 chrX:19002659-19002679 1.0000 20 chr8:79428412-79428432 1.0000 20 chr6:57037464-57037484 1.0000 20 chr6:4408106-4408126 1.0000 20 chr17:71228387-71228407 1.0000 20 chr7:6730826-6730846 1.0000 20 chr6:31670901-31670921 1.0000 20 chr19:12090573-12090593 1.0000 20 chrX:118708438-118708458 1.0000 20 chr11:47291567-47291587 1.0000 20 chr12:807563-807583 1.0000 20 chr11:72525252-72525272 1.0000 20 chr10:99078915-99078935 1.0000 20 chr19:12298593-12298613 1.0000 20 chr19:58049498-58049518 1.0000 20 chrX:153686485-153686505 1.0000 20 chr12:95207304-95207324 1.0000 20 chr22:18484465-18484485 1.0000 20 chr11:75479614-75479634 1.0000 20 chr11:71252120-71252140 1.0000 20 chr4:13486119-13486139 1.0000 20 chr18:52989088-52989108 1.0000 20 chr4:90032305-90032325 1.0000 20 chr3:169940021-169940041 1.0000 20 chr9:6757207-6757227 1.0000 20 chr20:42219428-42219448 1.0000 20 chr12:102271204-10227122 1.0000 20 chr1:154934375-154934395 1.0000 20 chr14:60679411-60679431 1.0000 20 chr13:76123725-76123745 1.0000 20 chr19:54041405-54041425 1.0000 20 chr17:7589726-7589746 1.0000 20 chr19:35739689-35739709 1.0000 20 chr19:14829462-14829482 1.0000 20 chr19:12060218-12060238 1.0000 20 chr19:2933602-2933622 1.0000 20 chr11:129872552-12987257 1.0000 20 chr18:3261938-3261958 1.0000 20 chr15:64455316-64455336 1.0000 20 chr14:75745355-75745375 1.0000 20 chr7:150020371-150020391 1.0000 20 chr3:15698045-15698065 1.0000 20 chr21:45196274-45196294 1.0000 20 chr2:191513459-191513479 1.0000 20 chr9:126959707-126959727 1.0000 20 chr7:139026075-139026095 1.0000 20 chr10:116286804-11628682 1.0000 20 chr19:12912742-12912762 1.0000 20 chr16:24550653-24550673 1.0000 20 chr2:39102947-39102967 1.0000 20 chr9:137000966-137000986 1.0000 20 chr7:121145796-121145816 1.0000 20 chr6:30524316-30524336 1.0000 20 chrX:53449313-53449333 1.0000 20 chr2:137139991-137140011 1.0000 20 chr7:6715797-6715817 1.0000 20 chr12:133635012-13363503 1.0000 20 chr1:117286327-117286347 1.0000 20 chr19:36134531-36134551 1.0000 20 chr4:73935798-73935818 1.0000 20 chr16:20911954-20911974 1.0000 20 chr2:19547873-19547893 1.0000 20 chr12:25104906-25104926 1.0000 20 chr20:34042515-34042535 1.0000 20 chr6:31304783-31304803 1.0000 20 chr3:9690923-9690943 1.0000 20 chr1:155658717-155658737 1.0000 20 chr16:88552985-88553005 1.0000 20 chr12:94816112-94816132 1.0000 20 chr2:46925748-46925768 1.0000 20 chr18:56322622-56322642 1.0000 20 chr19:37210693-37210713 1.0000 20 chr8:65836048-65836068 1.0000 20 chr1:27018820-27018840 1.0000 20 chr2:113299624-113299644 1.0000 20 chr1:31931344-31931364 1.0000 20 chr15:65118216-65118236 1.0000 20 chr11:568714-568734 1.0000 20 chr15:89787089-89787109 1.0000 20 chr3:50359034-50359054 1.0000 20 chr19:10443850-10443870 1.0000 20 chr12:133779268-13377928 1.0000 20 chr19:50354308-50354328 1.0000 20 chr7:121151137-121151157 1.0000 20 chr3:44380099-44380119 1.0000 20 chr16:81040652-81040672 1.0000 20 chr17:36956248-36956268 1.0000 20 chr12:131578616-13157863 1.0000 20 chr5:176433874-176433894 1.0000 20 chr19:10305729-10305749 1.0000 20 chr20:30160920-30160940 1.0000 20 chr21:19191839-19191859 1.0000 20 chr1:169455153-169455173 1.0000 20 chr6:152623415-152623435 1.0000 20 chr14:75348534-75348554 1.0000 20 chr4:1714207-1714227 1.0000 20 chr11:85913844-85913864 1.0000 20 chr1:6550672-6550692 1.0000 20 chr19:6737430-6737450 1.0000 20 chr1:32757513-32757533 1.0000 20 chr7:87849519-87849539 1.0000 20 chr14:39901501-39901521 1.0000 20 chr1:16940216-16940236 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_KLF5/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/KLF5.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.219 C 0.291 G 0.283 T 0.207 Background letter frequencies (from file dataset with add-one prior applied): A 0.219 C 0.291 G 0.283 T 0.207 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AWTTTWCT MEME-1 width = 8 sites = 22 llr = 166 E-value = 7.9e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif AWTTTWCT MEME-1 Description -------------------------------------------------------------------------------- Simplified A 96:2:52: pos.-specific C ::3:1:6: probability G 1:1::::: matrix T :468952a bits 2.3 * 2.0 * 1.8 * * 1.6 * ** * Relative 1.4 * ** * Entropy 1.1 * *** * (10.9 bits) 0.9 ****** * 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AATTTACT consensus TC TT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWTTTWCT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:58126905-58126925 3 5.61e-06 gc aatttact tctgtgcaag chr20:47897709-47897729 7 5.61e-06 aaggca aatttact tctgcc chr19:9784660-9784680 6 5.61e-06 aaggc aatttact tctacag chr15:80208300-80208320 7 1.62e-05 aaggca attttact ttctgc chr13:76123725-76123745 6 5.24e-05 GGCTT ATTTTTTT CTCCTCG chr18:23670738-23670758 13 5.99e-05 GCCCTGGCCG AACTTTCT chr1:31931344-31931364 11 1.05e-04 ttgctgagaa aacttttt gt chr4:6060484-6060504 1 1.05e-04 . aacttttt gtctgaatgc chr9:137000966-137000986 8 1.10e-04 ATGTATT ATTATACT TCAGT chr16:15068706-15068726 8 1.10e-04 TGTGATT ATTATACT TCTAC chr12:95207304-95207324 12 1.29e-04 gtacagagga aacttaat g chr17:5085525-5085545 8 1.53e-04 CAGTATG GATTTTCT GGTGT chr19:58132285-58132305 2 1.70e-04 A AATATTTT AGCCATCACT chr2:231095692-231095712 2 1.70e-04 g aagtttct tttgacatat chr12:25104906-25104926 5 1.96e-04 ggga gttttact gagggatg chr16:3367581-3367601 5 1.96e-04 TCAG ATCTTAAT AAGCACTT chr19:44980980-44981000 8 2.58e-04 CAGTGTG AATTCTCT GATGC chr1:246678853-246678873 7 3.00e-04 acaaaa agttttct cagcaa chr20:42219428-42219448 7 3.28e-04 GGTGAA AAGTTAAT TCTCCT chr5:180671283-180671303 5 3.28e-04 TTTC ATTTCACT ATCGTGGG chr19:55678290-55678310 7 3.86e-04 TTTTTT GTTTTTTT GTTTTC chr1:27018820-27018840 3 4.74e-04 GT AACATAAT GAATTGCCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWTTTWCT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:58126905-58126925 5.6e-06 2_[+1]_10 chr20:47897709-47897729 5.6e-06 6_[+1]_6 chr19:9784660-9784680 5.6e-06 5_[+1]_7 chr15:80208300-80208320 1.6e-05 6_[+1]_6 chr13:76123725-76123745 5.2e-05 5_[+1]_7 chr18:23670738-23670758 6e-05 12_[+1] chr1:31931344-31931364 0.0001 10_[+1]_2 chr4:6060484-6060504 0.0001 [+1]_12 chr9:137000966-137000986 0.00011 7_[+1]_5 chr16:15068706-15068726 0.00011 7_[+1]_5 chr12:95207304-95207324 0.00013 11_[+1]_1 chr17:5085525-5085545 0.00015 7_[+1]_5 chr19:58132285-58132305 0.00017 1_[+1]_11 chr2:231095692-231095712 0.00017 1_[+1]_11 chr12:25104906-25104926 0.0002 4_[+1]_8 chr16:3367581-3367601 0.0002 4_[+1]_8 chr19:44980980-44981000 0.00026 7_[+1]_5 chr1:246678853-246678873 0.0003 6_[+1]_6 chr20:42219428-42219448 0.00033 6_[+1]_6 chr5:180671283-180671303 0.00033 4_[+1]_8 chr19:55678290-55678310 0.00039 6_[+1]_6 chr1:27018820-27018840 0.00047 2_[+1]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWTTTWCT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AWTTTWCT width=8 seqs=22 chr19:58126905-58126925 ( 3) AATTTACT 1 chr20:47897709-47897729 ( 7) AATTTACT 1 chr19:9784660-9784680 ( 6) AATTTACT 1 chr15:80208300-80208320 ( 7) ATTTTACT 1 chr13:76123725-76123745 ( 6) ATTTTTTT 1 chr18:23670738-23670758 ( 13) AACTTTCT 1 chr1:31931344-31931364 ( 11) AACTTTTT 1 chr4:6060484-6060504 ( 1) AACTTTTT 1 chr9:137000966-137000986 ( 8) ATTATACT 1 chr16:15068706-15068726 ( 8) ATTATACT 1 chr12:95207304-95207324 ( 12) AACTTAAT 1 chr17:5085525-5085545 ( 8) GATTTTCT 1 chr19:58132285-58132305 ( 2) AATATTTT 1 chr2:231095692-231095712 ( 2) AAGTTTCT 1 chr12:25104906-25104926 ( 5) GTTTTACT 1 chr16:3367581-3367601 ( 5) ATCTTAAT 1 chr19:44980980-44981000 ( 8) AATTCTCT 1 chr1:246678853-246678873 ( 7) AGTTTTCT 1 chr20:42219428-42219448 ( 7) AAGTTAAT 1 chr5:180671283-180671303 ( 5) ATTTCACT 1 chr19:55678290-55678310 ( 7) GTTTTTTT 1 chr1:27018820-27018840 ( 3) AACATAAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWTTTWCT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.22846 E= 7.9e-002 198 -1110 -105 -1110 143 -1110 -263 81 -1110 -9 -164 162 -27 -1110 -1110 198 -1110 -168 -1110 214 131 -1110 -1110 114 -27 102 -1110 14 -1110 -1110 -1110 227 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWTTTWCT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 7.9e-002 0.863636 0.000000 0.136364 0.000000 0.590909 0.000000 0.045455 0.363636 0.000000 0.272727 0.090909 0.636364 0.181818 0.000000 0.000000 0.818182 0.000000 0.090909 0.000000 0.909091 0.545455 0.000000 0.000000 0.454545 0.181818 0.590909 0.000000 0.227273 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWTTTWCT MEME-1 regular expression -------------------------------------------------------------------------------- A[AT][TC]TT[AT][CT]T -------------------------------------------------------------------------------- Time 1.86 secs. ******************************************************************************** ******************************************************************************** MOTIF WGVAGRRA MEME-2 width = 8 sites = 34 llr = 222 E-value = 6.2e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif WGVAGRRA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 412a:669 pos.-specific C :14:::1: probability G :74:a441 matrix T 6::::1:: bits 2.3 * 2.0 * 1.8 ** 1.6 ** * Relative 1.4 ** * Entropy 1.1 * ** * (9.4 bits) 0.9 * *** * 0.7 ** ***** 0.5 ** ***** 0.2 ******** 0.0 -------- Multilevel TGCAGAAA consensus A G GG sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGVAGRRA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr8:8216185-8216205 9 2.19e-05 ttactttc tgcagaaa gggt chr5:171406788-171406808 1 2.19e-05 . tgcagaaa gggtacactc chr14:58894545-58894565 6 3.02e-05 GTGGC TGAAGAAA GCTATTA chr9:98268292-98268312 3 6.22e-05 AG AGAAGAAA gccgggccgc chr12:133779268-13377928 13 1.19e-04 ATGCAGTGAA TGCAGGAA chr2:46925748-46925768 8 1.19e-04 AGGGCGC TGGAGAGA CTCAT chr16:31927531-31927551 4 1.19e-04 TAC TGGAGAGA GACCCTACA chrX:48755390-48755410 8 1.19e-04 TTGGAGC TGGAGGAA GTGCT chr19:14829462-14829482 12 2.00e-04 GAAACCACAC AGGAGAGA A chr18:52989088-52989108 13 2.00e-04 GAATATGCAA AGCAGGAA chr6:148663806-148663826 8 2.23e-04 ACTTGCT AGAAGGAA CGAGT chr12:133635012-13363503 6 2.60e-04 ATGAA TGCAGGGA CTGTGAA chr16:29973138-29973158 7 2.60e-04 TCTCTC TGGAGGGA GCCTAC chr17:36956248-36956268 8 3.52e-04 GGGGGAG AGGAGGGA CGCAG chrX:47050156-47050176 2 3.52e-04 G AGCAGGGA CTGACGCCCC chrX:47880871-47880891 6 3.99e-04 TCCTC TCAAGAAA ATAACAG chr19:10305729-10305749 5 4.52e-04 CCTG TGCAGAAG GATGGAAC chr7:121145796-121145816 6 4.52e-04 acttc tgcagaag ggtgctg chr3:15698045-15698065 9 4.52e-04 cacccttc tgcagaag taaa chr7:104909631-104909651 3 5.07e-04 AA ACAAGAAA TCTTGAACAT chr8:107669966-107669986 9 5.07e-04 TAGAAGCC ACAAGAAA AACT chr13:115078860-11507888 11 6.02e-04 atgaaagagg tacagaga tg chr1:247320258-247320278 11 6.02e-04 TGAAGGCAAT TGGAGTAA CG chr4:13486119-13486139 5 7.38e-04 CTTC AGGAGACA GTTGGCTA chr13:76112102-76112122 10 7.38e-04 ATATATCTT AGGAGACA TTG chrX:53024961-53024981 12 7.38e-04 CACGTGGGTT TAAAGAGA C chr8:17941769-17941789 3 8.28e-04 GA AAGAGAGA GAGCCTTCCA chr19:2933602-2933622 7 9.75e-04 GAAGGG ACGAGGAA CAACTG chr19:58049498-58049518 10 9.75e-04 GCATTCGAC ACCAGAGA GTT chr14:67960217-67960237 13 9.75e-04 cgcacccttc tgcaggag chr16:30108448-30108468 1 1.00e-03 . agaagtaa agatgccttg chr1:117286327-117286347 2 1.09e-03 a tgcaggca gcacccttct chr7:128761720-128761740 7 1.22e-03 aaggca aggaggag caagtc chr1:156119460-156119480 2 1.22e-03 G TAGAGGGA AACCCAGAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGVAGRRA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:8216185-8216205 2.2e-05 8_[+2]_4 chr5:171406788-171406808 2.2e-05 [+2]_12 chr14:58894545-58894565 3e-05 5_[+2]_7 chr9:98268292-98268312 6.2e-05 2_[+2]_10 chr12:133779268-13377928 0.00012 12_[+2] chr2:46925748-46925768 0.00012 7_[+2]_5 chr16:31927531-31927551 0.00012 3_[+2]_9 chrX:48755390-48755410 0.00012 7_[+2]_5 chr19:14829462-14829482 0.0002 11_[+2]_1 chr18:52989088-52989108 0.0002 12_[+2] chr6:148663806-148663826 0.00022 7_[+2]_5 chr12:133635012-13363503 0.00026 5_[+2]_7 chr16:29973138-29973158 0.00026 6_[+2]_6 chr17:36956248-36956268 0.00035 7_[+2]_5 chrX:47050156-47050176 0.00035 1_[+2]_11 chrX:47880871-47880891 0.0004 5_[+2]_7 chr19:10305729-10305749 0.00045 4_[+2]_8 chr7:121145796-121145816 0.00045 5_[+2]_7 chr3:15698045-15698065 0.00045 8_[+2]_4 chr7:104909631-104909651 0.00051 2_[+2]_10 chr8:107669966-107669986 0.00051 8_[+2]_4 chr13:115078860-11507888 0.0006 10_[+2]_2 chr1:247320258-247320278 0.0006 10_[+2]_2 chr4:13486119-13486139 0.00074 4_[+2]_8 chr13:76112102-76112122 0.00074 9_[+2]_3 chrX:53024961-53024981 0.00074 11_[+2]_1 chr8:17941769-17941789 0.00083 2_[+2]_10 chr19:2933602-2933622 0.00097 6_[+2]_6 chr19:58049498-58049518 0.00097 9_[+2]_3 chr14:67960217-67960237 0.00097 12_[+2] chr16:30108448-30108468 0.001 [+2]_12 chr1:117286327-117286347 0.0011 1_[+2]_11 chr7:128761720-128761740 0.0012 6_[+2]_6 chr1:156119460-156119480 0.0012 1_[+2]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGVAGRRA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WGVAGRRA width=8 seqs=34 chr8:8216185-8216205 ( 9) TGCAGAAA 1 chr5:171406788-171406808 ( 1) TGCAGAAA 1 chr14:58894545-58894565 ( 6) TGAAGAAA 1 chr9:98268292-98268312 ( 3) AGAAGAAA 1 chr12:133779268-13377928 ( 13) TGCAGGAA 1 chr2:46925748-46925768 ( 8) TGGAGAGA 1 chr16:31927531-31927551 ( 4) TGGAGAGA 1 chrX:48755390-48755410 ( 8) TGGAGGAA 1 chr19:14829462-14829482 ( 12) AGGAGAGA 1 chr18:52989088-52989108 ( 13) AGCAGGAA 1 chr6:148663806-148663826 ( 8) AGAAGGAA 1 chr12:133635012-13363503 ( 6) TGCAGGGA 1 chr16:29973138-29973158 ( 7) TGGAGGGA 1 chr17:36956248-36956268 ( 8) AGGAGGGA 1 chrX:47050156-47050176 ( 2) AGCAGGGA 1 chrX:47880871-47880891 ( 6) TCAAGAAA 1 chr19:10305729-10305749 ( 5) TGCAGAAG 1 chr7:121145796-121145816 ( 6) TGCAGAAG 1 chr3:15698045-15698065 ( 9) TGCAGAAG 1 chr7:104909631-104909651 ( 3) ACAAGAAA 1 chr8:107669966-107669986 ( 9) ACAAGAAA 1 chr13:115078860-11507888 ( 11) TACAGAGA 1 chr1:247320258-247320278 ( 11) TGGAGTAA 1 chr4:13486119-13486139 ( 5) AGGAGACA 1 chr13:76112102-76112122 ( 10) AGGAGACA 1 chrX:53024961-53024981 ( 12) TAAAGAGA 1 chr8:17941769-17941789 ( 3) AAGAGAGA 1 chr19:2933602-2933622 ( 7) ACGAGGAA 1 chr19:58049498-58049518 ( 10) ACCAGAGA 1 chr14:67960217-67960237 ( 13) TGCAGGAG 1 chr16:30108448-30108468 ( 1) AGAAGTAA 1 chr1:117286327-117286347 ( 2) TGCAGGCA 1 chr7:128761720-128761740 ( 7) AGGAGGAG 1 chr1:156119460-156119480 ( 2) TAGAGGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGVAGRRA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.93789 E= 6.2e+000 101 -1173 -1173 143 -90 -98 138 -1173 10 39 43 -1173 219 -1173 -1173 -1173 -1173 -1173 182 -1173 135 -1173 43 -181 135 -172 32 -1173 196 -1173 -94 -1173 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGVAGRRA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 34 E= 6.2e+000 0.441176 0.000000 0.000000 0.558824 0.117647 0.147059 0.735294 0.000000 0.235294 0.382353 0.382353 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.558824 0.000000 0.382353 0.058824 0.558824 0.088235 0.352941 0.000000 0.852941 0.000000 0.147059 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGVAGRRA MEME-2 regular expression -------------------------------------------------------------------------------- [TA]G[CGA]AG[AG][AG]A -------------------------------------------------------------------------------- Time 4.91 secs. ******************************************************************************** ******************************************************************************** MOTIF ATAAATGT MEME-3 width = 8 sites = 2 llr = 24 E-value = 2.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATAAATGT MEME-3 Description -------------------------------------------------------------------------------- Simplified A a:aaa::: pos.-specific C :::::::: probability G ::::::a: matrix T :a:::a:a bits 2.3 ****** * 2.0 ****** * 1.8 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.1 ******** (17.4 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ATAAATGT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATAAATGT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:6715797-6715817 1 5.77e-06 . ATAAATGT AGCAAATCTG chr16:31766439-31766459 12 5.77e-06 GAGAAACCCT ATAAATGT A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATAAATGT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:6715797-6715817 5.8e-06 [+3]_12 chr16:31766439-31766459 5.8e-06 11_[+3]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATAAATGT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATAAATGT width=8 seqs=2 chr7:6715797-6715817 ( 1) ATAAATGT 1 chr16:31766439-31766459 ( 12) ATAAATGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATAAATGT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.6653 E= 2.1e+003 218 -765 -765 -765 -765 -765 -765 227 218 -765 -765 -765 218 -765 -765 -765 218 -765 -765 -765 -765 -765 -765 227 -765 -765 182 -765 -765 -765 -765 227 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATAAATGT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.1e+003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATAAATGT MEME-3 regular expression -------------------------------------------------------------------------------- ATAAATGT -------------------------------------------------------------------------------- Time 7.77 secs. ******************************************************************************** ******************************************************************************** MOTIF TCTGTGAG MEME-4 width = 8 sites = 3 llr = 34 E-value = 2.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTGTGAG MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::::a: pos.-specific C :a:::::: probability G :::a:a:a matrix T a:a:a::: bits 2.3 * * * * 2.0 * * * * 1.8 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.1 ******** (16.3 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TCTGTGAG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGTGAG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:127609843-127609863 1 1.28e-05 . tctgtgag ggcacaccct chr6:35231481-35231501 13 1.28e-05 tcaaccccac tctgtgag chr12:106696425-10669644 8 1.28e-05 GGTTCAG TCTGTGAG CGCTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGTGAG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:127609843-127609863 1.3e-05 [+4]_12 chr6:35231481-35231501 1.3e-05 12_[+4] chr12:106696425-10669644 1.3e-05 7_[+4]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGTGAG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTGTGAG width=8 seqs=3 chr3:127609843-127609863 ( 1) TCTGTGAG 1 chr6:35231481-35231501 ( 13) TCTGTGAG 1 chr12:106696425-10669644 ( 8) TCTGTGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGTGAG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.73854 E= 2.1e+003 -823 -823 -823 227 -823 178 -823 -823 -823 -823 -823 227 -823 -823 182 -823 -823 -823 -823 227 -823 -823 182 -823 219 -823 -823 -823 -823 -823 182 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGTGAG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 2.1e+003 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGTGAG MEME-4 regular expression -------------------------------------------------------------------------------- TCTGTGAG -------------------------------------------------------------------------------- Time 10.62 secs. ******************************************************************************** ******************************************************************************** MOTIF CAMCCTTC MEME-5 width = 8 sites = 10 llr = 87 E-value = 3.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAMCCTTC MEME-5 Description -------------------------------------------------------------------------------- Simplified A 294::::: pos.-specific C 8168a1:a probability G :::::::: matrix T :::2:9a: bits 2.3 * 2.0 * 1.8 **** 1.6 * **** Relative 1.4 * **** Entropy 1.1 ** ***** (12.5 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CACCCTTC consensus A AT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAMCCTTC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:117286327-117286347 11 1.96e-05 atgcaggcag cacccttc tg chr3:15698045-15698065 1 1.96e-05 . cacccttc tgcagaagta chr3:127609843-127609863 13 1.96e-05 tgtgagggca cacccttc chr14:67960217-67960237 5 1.96e-05 gccg cacccttc tgcaggag chr17:7743427-7743447 4 4.82e-05 GCC CACTCTTC AGAATGGTC chr21:34739917-34739937 11 4.82e-05 acacaggcag cactcttc tg chr1:40928932-40928952 1 8.46e-05 . AAACCTTC AGCCATAGTA chr7:5104141-5104161 1 8.46e-05 . AAACCTTC TGCCAAAAGA chr14:56046717-56046737 5 1.76e-04 GCGT CCACCTTC GGCCCAGC chr20:34042515-34042535 1 1.97e-04 . CAACCCTC AGAAACCGGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAMCCTTC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:117286327-117286347 2e-05 10_[+5]_2 chr3:15698045-15698065 2e-05 [+5]_12 chr3:127609843-127609863 2e-05 12_[+5] chr14:67960217-67960237 2e-05 4_[+5]_8 chr17:7743427-7743447 4.8e-05 3_[+5]_9 chr21:34739917-34739937 4.8e-05 10_[+5]_2 chr1:40928932-40928952 8.5e-05 [+5]_12 chr7:5104141-5104161 8.5e-05 [+5]_12 chr14:56046717-56046737 0.00018 4_[+5]_8 chr20:34042515-34042535 0.0002 [+5]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAMCCTTC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAMCCTTC width=8 seqs=10 chr1:117286327-117286347 ( 11) CACCCTTC 1 chr3:15698045-15698065 ( 1) CACCCTTC 1 chr3:127609843-127609863 ( 13) CACCCTTC 1 chr14:67960217-67960237 ( 5) CACCCTTC 1 chr17:7743427-7743447 ( 4) CACTCTTC 1 chr21:34739917-34739937 ( 11) CACTCTTC 1 chr1:40928932-40928952 ( 1) AAACCTTC 1 chr7:5104141-5104161 ( 1) AAACCTTC 1 chr14:56046717-56046737 ( 5) CCACCTTC 1 chr20:34042515-34042535 ( 1) CAACCCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAMCCTTC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.2854 E= 3.0e+003 -13 146 -997 -997 204 -154 -997 -997 87 104 -997 -997 -997 146 -997 -5 -997 178 -997 -997 -997 -154 -997 212 -997 -997 -997 227 -997 178 -997 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAMCCTTC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 3.0e+003 0.200000 0.800000 0.000000 0.000000 0.900000 0.100000 0.000000 0.000000 0.400000 0.600000 0.000000 0.000000 0.000000 0.800000 0.000000 0.200000 0.000000 1.000000 0.000000 0.000000 0.000000 0.100000 0.000000 0.900000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAMCCTTC MEME-5 regular expression -------------------------------------------------------------------------------- [CA]A[CA][CT]CTTC -------------------------------------------------------------------------------- Time 13.33 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:40389436-40389456 5.63e-01 20 chr10:116852954-11685297 6.53e-01 20 chr20:47903696-47903716 3.89e-01 20 chr19:9784660-9784680 4.55e-03 5_[+1(5.61e-06)]_7 chr11:68120285-68120305 4.69e-01 20 chr16:70100022-70100042 8.22e-02 20 chr13:37394555-37394575 2.36e-01 20 chr22:45619577-45619597 9.10e-01 20 chr6:160114538-160114558 8.68e-01 20 chr9:135285439-135285459 9.61e-01 20 chr22:37415609-37415629 7.68e-01 20 chr11:911169-911189 8.62e-01 20 chr8:17013372-17013392 7.75e-01 20 chr2:231095692-231095712 6.01e-02 20 chr7:2595251-2595271 3.67e-01 20 chr7:16685598-16685618 3.55e-01 20 chr8:107669966-107669986 2.09e-01 20 chr2:120301874-120301894 7.09e-01 20 chr12:56224465-56224485 6.45e-02 20 chr1:1677731-1677751 9.98e-01 20 chr1:84464937-84464957 6.70e-02 20 chr19:49653734-49653754 2.77e-01 20 chr2:86947267-86947287 6.49e-01 20 chr19:58708556-58708576 7.81e-03 20 chr20:633946-633966 9.93e-01 20 chr4:6060484-6060504 3.55e-03 20 chr9:98268292-98268312 9.21e-02 2_[+2(6.22e-05)]_10 chr6:83073392-83073412 1.87e-01 20 chrX:49022866-49022886 1.60e-01 20 chr17:75632022-75632042 4.34e-01 20 chr16:29973138-29973158 6.52e-02 20 chr19:12155014-12155034 4.51e-01 20 chr14:67960217-67960237 6.95e-04 4_[+5(1.96e-05)]_8 chr21:44394220-44394240 7.58e-01 20 chrX:43514005-43514025 4.79e-01 20 chrX:47880871-47880891 5.76e-02 20 chr14:52118253-52118273 8.91e-01 20 chr19:7083268-7083288 3.35e-01 20 chr8:107282302-107282322 9.87e-01 20 chr17:40439527-40439547 1.97e-01 20 chr19:12638392-12638412 3.85e-01 20 chr1:200860515-200860535 3.77e-01 20 chr3:160473082-160473102 5.07e-01 20 chr1:26437992-26438012 1.00e+00 20 chr3:151986458-151986478 9.41e-01 20 chr1:247320258-247320278 1.35e-01 20 chr19:42927430-42927450 9.65e-01 20 chrX:47479301-47479321 7.49e-01 20 chr5:150284626-150284646 7.26e-01 20 chr16:15068706-15068726 1.71e-02 20 chr22:24129751-24129771 4.04e-01 20 chr7:5104141-5104161 5.26e-04 [+5(8.46e-05)]_12 chr12:113623410-11362343 1.55e-01 20 chr20:47897709-47897729 1.81e-03 6_[+1(5.61e-06)]_6 chr11:47290812-47290832 8.39e-01 20 chr5:171406788-171406808 1.92e-03 [+2(2.19e-05)]_12 chr12:106696425-10669644 7.66e-03 7_[+4(1.28e-05)]_5 chrX:48858821-48858841 3.28e-01 20 chr10:112201601-11220162 3.29e-01 20 chr7:104909631-104909651 7.95e-04 20 chr14:56046717-56046737 2.35e-01 20 chr2:87303853-87303873 4.37e-01 20 chr19:7083469-7083489 4.33e-01 20 chr5:173345053-173345073 3.33e-01 20 chr12:1703914-1703934 9.96e-01 20 chr15:80208300-80208320 6.53e-03 6_[+1(1.62e-05)]_6 chr1:1624454-1624474 8.93e-01 20 chr19:9676825-9676845 7.46e-01 20 chr2:86790202-86790222 1.97e-01 20 chr3:111578366-111578386 9.66e-01 20 chr1:156119460-156119480 3.03e-01 20 chr16:3367581-3367601 3.25e-02 20 chr7:102920565-102920585 3.61e-01 20 chr20:57464066-57464086 9.61e-01 20 chr20:2633145-2633165 8.49e-01 20 chr6:35231481-35231501 7.01e-03 12_[+4(1.28e-05)] chr3:79068752-79068772 1.53e-01 20 chr1:11539031-11539051 9.52e-01 20 chr19:58132285-58132305 3.25e-03 20 chr13:115078860-11507888 1.41e-01 20 chrX:47050156-47050176 2.34e-01 20 chrX:48755390-48755410 1.49e-01 20 chr7:6731575-6731595 1.85e-01 20 chrX:53024961-53024981 1.31e-01 20 chr16:3458766-3458786 6.68e-01 20 chr8:8216185-8216205 1.29e-03 8_[+2(2.19e-05)]_4 chr18:658261-658281 7.82e-01 20 chr18:23670738-23670758 1.30e-02 12_[+1(5.99e-05)] chr1:40928932-40928952 6.89e-02 [+5(8.46e-05)]_12 chr1:246678853-246678873 2.06e-03 20 chr3:127609843-127609863 3.03e-05 [+4(1.28e-05)]_4_[+5(1.96e-05)] chr10:115720632-11572065 1.09e-01 20 chr16:30108448-30108468 9.11e-02 20 chrX:47420798-47420818 6.25e-01 20 chr3:187463426-187463446 3.84e-01 20 chr9:71788988-71789008 9.83e-01 20 chr16:2563780-2563800 9.98e-01 20 chr5:153570021-153570041 6.45e-01 20 chr19:2163826-2163846 1.00e+00 20 chrX:47225579-47225599 9.45e-01 20 chr7:154794969-154794989 9.41e-01 20 chr9:34637867-34637887 2.86e-01 20 chr9:130538820-130538840 4.57e-01 20 chr6:148663806-148663826 1.81e-01 20 chr12:50794405-50794425 3.01e-02 20 chr5:180671283-180671303 1.12e-01 20 chr14:58894545-58894565 1.66e-03 5_[+2(3.02e-05)]_7 chr8:17941769-17941789 1.28e-01 20 chr17:5085525-5085545 1.00e-02 20 chr5:177557905-177557925 6.72e-01 20 chrX:129304832-129304852 4.02e-01 20 chr10:99094593-99094613 9.52e-01 20 chr21:34739917-34739937 3.26e-03 10_[+5(4.82e-05)]_2 chr11:129872341-12987236 5.41e-01 20 chr22:39052509-39052529 5.63e-01 20 chrX:47077923-47077943 9.17e-01 20 chrX:118827279-118827299 7.45e-01 20 chr3:44040757-44040777 7.95e-01 20 chr14:100070786-10007080 8.00e-01 20 chr13:76112102-76112122 1.38e-04 20 chr19:58126905-58126925 2.69e-04 2_[+1(5.61e-06)]_10 chr2:28615528-28615548 8.89e-01 20 chr17:7343953-7343973 8.25e-01 20 chr14:39736444-39736464 2.75e-01 20 chr19:55678290-55678310 1.45e-01 20 chr3:9438442-9438462 9.13e-01 20 chr19:44980980-44981000 5.41e-03 20 chr7:128761720-128761740 4.91e-01 20 chr19:36869958-36869978 4.91e-01 20 chr1:6052205-6052225 5.62e-01 20 chr19:42806733-42806753 9.96e-01 20 chr11:45921486-45921506 4.85e-01 20 chr1:40283046-40283066 9.23e-01 20 chr7:21985648-21985668 9.90e-01 20 chr18:13597238-13597258 8.02e-01 20 chr14:64184627-64184647 3.66e-01 20 chr7:99129169-99129189 2.05e-01 20 chr17:58042268-58042288 3.43e-01 20 chr16:31927531-31927551 2.63e-02 20 chr1:36621472-36621492 7.87e-01 20 chr8:41435907-41435927 9.93e-01 20 chr16:31766439-31766459 6.81e-04 11_[+3(5.77e-06)]_1 chr10:82937616-82937636 5.27e-01 20 chr3:194406511-194406531 3.47e-01 20 chr7:123389170-123389190 9.80e-01 20 chr21:34863972-34863992 9.73e-01 20 chr17:7743427-7743447 2.26e-02 3_[+5(4.82e-05)]_9 chrX:19002659-19002679 3.21e-01 20 chr8:79428412-79428432 9.56e-02 20 chr6:57037464-57037484 7.17e-01 20 chr6:4408106-4408126 6.86e-01 20 chr17:71228387-71228407 8.47e-01 20 chr7:6730826-6730846 2.24e-01 20 chr6:31670901-31670921 2.49e-01 20 chr19:12090573-12090593 3.18e-01 20 chrX:118708438-118708458 7.97e-01 20 chr11:47291567-47291587 9.94e-01 20 chr12:807563-807583 7.66e-01 20 chr11:72525252-72525272 1.15e-01 20 chr10:99078915-99078935 8.01e-01 20 chr19:12298593-12298613 1.38e-01 20 chr19:58049498-58049518 1.71e-01 20 chrX:153686485-153686505 8.19e-01 20 chr12:95207304-95207324 1.06e-02 20 chr22:18484465-18484485 7.45e-01 20 chr11:75479614-75479634 4.30e-01 20 chr11:71252120-71252140 3.54e-01 20 chr4:13486119-13486139 1.59e-01 20 chr18:52989088-52989108 9.82e-03 20 chr4:90032305-90032325 9.49e-01 20 chr3:169940021-169940041 8.10e-01 20 chr9:6757207-6757227 4.59e-01 20 chr20:42219428-42219448 1.11e-02 20 chr12:102271204-10227122 8.50e-01 20 chr1:154934375-154934395 8.30e-01 20 chr14:60679411-60679431 9.74e-01 20 chr13:76123725-76123745 2.31e-02 5_[+1(5.24e-05)]_7 chr19:54041405-54041425 8.57e-01 20 chr17:7589726-7589746 5.83e-01 20 chr19:35739689-35739709 9.95e-01 20 chr19:14829462-14829482 8.53e-02 20 chr19:12060218-12060238 7.57e-01 20 chr19:2933602-2933622 4.90e-01 20 chr11:129872552-12987257 1.35e-01 20 chr18:3261938-3261958 8.90e-01 20 chr15:64455316-64455336 3.53e-01 20 chr14:75745355-75745375 9.63e-01 20 chr7:150020371-150020391 8.13e-01 20 chr3:15698045-15698065 5.26e-04 [+5(1.96e-05)]_12 chr21:45196274-45196294 9.19e-01 20 chr2:191513459-191513479 9.45e-01 20 chr9:126959707-126959727 7.09e-01 20 chr7:139026075-139026095 6.75e-01 20 chr10:116286804-11628682 1.24e-01 20 chr19:12912742-12912762 5.33e-01 20 chr16:24550653-24550673 1.33e-01 20 chr2:39102947-39102967 8.98e-01 20 chr9:137000966-137000986 9.62e-03 20 chr7:121145796-121145816 7.39e-02 20 chr6:30524316-30524336 5.58e-01 20 chrX:53449313-53449333 9.40e-01 20 chr2:137139991-137140011 6.76e-01 20 chr7:6715797-6715817 4.49e-03 [+3(5.77e-06)]_12 chr12:133635012-13363503 2.62e-03 20 chr1:117286327-117286347 1.40e-03 10_[+5(1.96e-05)]_2 chr19:36134531-36134551 8.81e-01 20 chr4:73935798-73935818 8.37e-02 20 chr16:20911954-20911974 3.30e-01 20 chr2:19547873-19547893 2.02e-01 20 chr12:25104906-25104926 3.04e-02 20 chr20:34042515-34042535 8.16e-02 20 chr6:31304783-31304803 3.26e-01 20 chr3:9690923-9690943 3.15e-01 20 chr1:155658717-155658737 8.00e-01 20 chr16:88552985-88553005 9.13e-01 20 chr12:94816112-94816132 1.40e-01 20 chr2:46925748-46925768 7.88e-02 20 chr18:56322622-56322642 1.52e-01 20 chr19:37210693-37210713 2.91e-01 20 chr8:65836048-65836068 8.79e-02 20 chr1:27018820-27018840 7.42e-02 20 chr2:113299624-113299644 7.16e-01 20 chr1:31931344-31931364 5.21e-04 20 chr15:65118216-65118236 6.96e-01 20 chr11:568714-568734 9.99e-01 20 chr15:89787089-89787109 4.77e-01 20 chr3:50359034-50359054 8.64e-01 20 chr19:10443850-10443870 9.92e-01 20 chr12:133779268-13377928 2.21e-02 20 chr19:50354308-50354328 8.26e-01 20 chr7:121151137-121151157 4.49e-01 20 chr3:44380099-44380119 6.56e-01 20 chr16:81040652-81040672 5.54e-01 20 chr17:36956248-36956268 3.21e-01 20 chr12:131578616-13157863 7.50e-01 20 chr5:176433874-176433894 8.96e-01 20 chr19:10305729-10305749 1.28e-01 20 chr20:30160920-30160940 8.98e-01 20 chr21:19191839-19191859 9.04e-01 20 chr1:169455153-169455173 6.19e-01 20 chr6:152623415-152623435 8.47e-01 20 chr14:75348534-75348554 7.10e-01 20 chr4:1714207-1714227 9.96e-01 20 chr11:85913844-85913864 6.68e-01 20 chr1:6550672-6550692 9.85e-01 20 chr19:6737430-6737450 9.78e-01 20 chr1:32757513-32757533 7.27e-01 20 chr7:87849519-87849539 2.37e-01 20 chr14:39901501-39901521 9.97e-01 20 chr1:16940216-16940236 9.06e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n10.farnam.hpc.yale.internal ********************************************************************************