******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/KDM1A.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr7:45129179-45129199 1.0000 20 chr7:50346585-50346605 1.0000 20 chr1:27815976-27815996 1.0000 20 chr15:72598678-72598698 1.0000 20 chrX:154493593-154493613 1.0000 20 chr3:52272674-52272694 1.0000 20 chr17:74449485-74449505 1.0000 20 chr16:75033978-75033998 1.0000 20 chr10:112680213-11268023 1.0000 20 chr8:22858304-22858324 1.0000 20 chr9:116502244-116502264 1.0000 20 chr19:8257399-8257419 1.0000 20 chr7:30029934-30029954 1.0000 20 chr19:4633217-4633237 1.0000 20 chr20:61644714-61644734 1.0000 20 chr7:2442746-2442766 1.0000 20 chr1:51956149-51956169 1.0000 20 chr1:174157819-174157839 1.0000 20 chr11:118797524-11879754 1.0000 20 chr16:89252476-89252496 1.0000 20 chr8:52814947-52814967 1.0000 20 chr12:53739173-53739193 1.0000 20 chr1:23920820-23920840 1.0000 20 chr5:169815470-169815490 1.0000 20 chr17:77337229-77337249 1.0000 20 chr1:155829437-155829457 1.0000 20 chrX:1641737-1641757 1.0000 20 chr9:139650309-139650329 1.0000 20 chr17:16472763-16472783 1.0000 20 chr10:98561373-98561393 1.0000 20 chr17:38279847-38279867 1.0000 20 chr19:45932340-45932360 1.0000 20 chr2:110270941-110270961 1.0000 20 chr4:24586639-24586659 1.0000 20 chr19:14152303-14152323 1.0000 20 chr2:74254798-74254818 1.0000 20 chr20:633543-633563 1.0000 20 chr14:53607415-53607435 1.0000 20 chr8:131291246-131291266 1.0000 20 chr5:148997407-148997427 1.0000 20 chr9:126979985-126980005 1.0000 20 chr5:149893576-149893596 1.0000 20 chr2:61199374-61199394 1.0000 20 chr5:180231258-180231278 1.0000 20 chr19:16370493-16370513 1.0000 20 chr2:70016353-70016373 1.0000 20 chr19:10526502-10526522 1.0000 20 chr3:5029385-5029405 1.0000 20 chr16:3628493-3628513 1.0000 20 chr12:108713214-10871323 1.0000 20 chr12:121695285-12169530 1.0000 20 chrX:222776-222796 1.0000 20 chr22:50050628-50050648 1.0000 20 chr12:31886697-31886717 1.0000 20 chr20:23624892-23624912 1.0000 20 chr9:123838109-123838129 1.0000 20 chr19:6777632-6777652 1.0000 20 chr11:67417148-67417168 1.0000 20 chr8:134511320-134511340 1.0000 20 chr6:90995524-90995544 1.0000 20 chr12:113508567-11350858 1.0000 20 chr19:2475637-2475657 1.0000 20 chr1:15742273-15742293 1.0000 20 chr6:90103592-90103612 1.0000 20 chr18:48724885-48724905 1.0000 20 chr4:146730079-146730099 1.0000 20 chr19:4233675-4233695 1.0000 20 chr19:2051699-2051719 1.0000 20 chr19:9945348-9945368 1.0000 20 chr17:16312301-16312321 1.0000 20 chr9:127017638-127017658 1.0000 20 chr11:114479310-11447933 1.0000 20 chr8:28258932-28258952 1.0000 20 chr10:130262781-13026280 1.0000 20 chr10:32662620-32662640 1.0000 20 chr9:71650488-71650508 1.0000 20 chr15:63789613-63789633 1.0000 20 chr16:69458043-69458063 1.0000 20 chr16:27411156-27411176 1.0000 20 chr19:17858142-17858162 1.0000 20 chr22:51059461-51059481 1.0000 20 chr19:46209656-46209676 1.0000 20 chr1:249240230-249240250 1.0000 20 chr1:156195940-156195960 1.0000 20 chr14:76139624-76139644 1.0000 20 chr16:66865158-66865178 1.0000 20 chr14:68839983-68840003 1.0000 20 chr19:7246786-7246806 1.0000 20 chr1:12118504-12118524 1.0000 20 chr5:157288805-157288825 1.0000 20 chr10:65115154-65115174 1.0000 20 chr19:1398047-1398067 1.0000 20 chr3:142926598-142926618 1.0000 20 chr17:29465495-29465515 1.0000 20 chr15:71185295-71185315 1.0000 20 chr16:11763242-11763262 1.0000 20 chr22:43062119-43062139 1.0000 20 chr17:8771637-8771657 1.0000 20 chr19:7179061-7179081 1.0000 20 chr4:40517757-40517777 1.0000 20 chr17:75490543-75490563 1.0000 20 chr14:23399957-23399977 1.0000 20 chr8:74903255-74903275 1.0000 20 chr15:90705454-90705474 1.0000 20 chr19:39893184-39893204 1.0000 20 chr22:35524924-35524944 1.0000 20 chr22:35705512-35705532 1.0000 20 chr12:133044357-13304437 1.0000 20 chr17:42402525-42402545 1.0000 20 chr3:53290299-53290319 1.0000 20 chr19:1037277-1037297 1.0000 20 chrX:1013318-1013338 1.0000 20 chr9:126101120-126101140 1.0000 20 chr8:17941803-17941823 1.0000 20 chr17:78549331-78549351 1.0000 20 chr22:21921825-21921845 1.0000 20 chr19:7242605-7242625 1.0000 20 chr19:46148760-46148780 1.0000 20 chr11:77849911-77849931 1.0000 20 chr12:121123155-12112317 1.0000 20 chr12:122102391-12210241 1.0000 20 chr20:32891445-32891465 1.0000 20 chr2:203499381-203499401 1.0000 20 chr4:40994019-40994039 1.0000 20 chr2:197041336-197041356 1.0000 20 chr12:112124175-11212419 1.0000 20 chr2:71558494-71558514 1.0000 20 chr9:5581787-5581807 1.0000 20 chr17:79269546-79269566 1.0000 20 chr19:10527595-10527615 1.0000 20 chr9:136688103-136688123 1.0000 20 chr3:194870959-194870979 1.0000 20 chr19:17505822-17505842 1.0000 20 chr12:93561305-93561325 1.0000 20 chrX:118781780-118781800 1.0000 20 chr22:39545224-39545244 1.0000 20 chr11:95131072-95131092 1.0000 20 chr10:14784329-14784349 1.0000 20 chr7:66385936-66385956 1.0000 20 chr1:12261588-12261608 1.0000 20 chr11:118692041-11869206 1.0000 20 chr19:17873609-17873629 1.0000 20 chr3:9994279-9994299 1.0000 20 chr5:176924951-176924971 1.0000 20 chr2:203249472-203249492 1.0000 20 chr19:16251927-16251947 1.0000 20 chr11:117868582-11786860 1.0000 20 chr19:12900137-12900157 1.0000 20 chr7:2670891-2670911 1.0000 20 chr19:10542033-10542053 1.0000 20 chr3:186741282-186741302 1.0000 20 chr17:80452848-80452868 1.0000 20 chr7:98400706-98400726 1.0000 20 chr15:65184605-65184625 1.0000 20 chr16:24032019-24032039 1.0000 20 chr19:6772134-6772154 1.0000 20 chr1:113178482-113178502 1.0000 20 chr20:49431151-49431171 1.0000 20 chr20:42379536-42379556 1.0000 20 chr16:89253309-89253329 1.0000 20 chr8:71092924-71092944 1.0000 20 chrX:7895950-7895970 1.0000 20 chr19:4724548-4724568 1.0000 20 chr2:3612344-3612364 1.0000 20 chr12:739730-739750 1.0000 20 chr2:234159868-234159888 1.0000 20 chr19:2628106-2628126 1.0000 20 chr19:47747430-47747450 1.0000 20 chr4:38673334-38673354 1.0000 20 chr11:72687584-72687604 1.0000 20 chr19:1069049-1069069 1.0000 20 chr1:12221564-12221584 1.0000 20 chr12:123920092-12392011 1.0000 20 chr2:231466976-231466996 1.0000 20 chr4:46501-46521 1.0000 20 chr11:82772827-82772847 1.0000 20 chr4:48199297-48199317 1.0000 20 chr19:18210622-18210642 1.0000 20 chr20:52353815-52353835 1.0000 20 chr3:72213566-72213586 1.0000 20 chr11:66314111-66314131 1.0000 20 chr17:65664466-65664486 1.0000 20 chr1:150540811-150540831 1.0000 20 chr1:179847148-179847168 1.0000 20 chr7:24995122-24995142 1.0000 20 chr5:139913125-139913145 1.0000 20 chr19:42387851-42387871 1.0000 20 chr6:167344225-167344245 1.0000 20 chr1:144932009-144932029 1.0000 20 chr22:41464868-41464888 1.0000 20 chr10:101491498-10149151 1.0000 20 chr14:78082032-78082052 1.0000 20 chr1:25345528-25345548 1.0000 20 chr17:8796572-8796592 1.0000 20 chr12:133113085-13311310 1.0000 20 chr17:53541168-53541188 1.0000 20 chr19:14691561-14691581 1.0000 20 chr12:109248856-10924887 1.0000 20 chr1:183446820-183446840 1.0000 20 chr9:36551006-36551026 1.0000 20 chr10:104941715-10494173 1.0000 20 chr8:28259134-28259154 1.0000 20 chr14:23479229-23479249 1.0000 20 chr12:111846036-11184605 1.0000 20 chr10:90020356-90020376 1.0000 20 chr3:113477380-113477400 1.0000 20 chr19:39826918-39826938 1.0000 20 chr5:116099412-116099432 1.0000 20 chr1:51966553-51966573 1.0000 20 chr19:3812177-3812197 1.0000 20 chr6:7107385-7107405 1.0000 20 chr3:101441539-101441559 1.0000 20 chr14:95794625-95794645 1.0000 20 chrX:53101009-53101029 1.0000 20 chr22:50223678-50223698 1.0000 20 chrX:2184125-2184145 1.0000 20 chr6:82706418-82706438 1.0000 20 chr19:7766530-7766550 1.0000 20 chr7:4681567-4681587 1.0000 20 chr22:40306219-40306239 1.0000 20 chr10:49880789-49880809 1.0000 20 chr11:120575884-12057590 1.0000 20 chr7:73645119-73645139 1.0000 20 chr7:6413641-6413661 1.0000 20 chr16:23853515-23853535 1.0000 20 chr12:133044556-13304457 1.0000 20 chr10:64492640-64492660 1.0000 20 chr12:125481631-12548165 1.0000 20 chr5:158384251-158384271 1.0000 20 chrX:51483494-51483514 1.0000 20 chr3:194871163-194871183 1.0000 20 chr14:71824956-71824976 1.0000 20 chr17:44254440-44254460 1.0000 20 chr10:12164416-12164436 1.0000 20 chr8:98643422-98643442 1.0000 20 chr6:26359068-26359088 1.0000 20 chr6:30875555-30875575 1.0000 20 chr20:43275506-43275526 1.0000 20 chr9:4465503-4465523 1.0000 20 chr10:64415701-64415721 1.0000 20 chr1:163301875-163301895 1.0000 20 chr20:48532686-48532706 1.0000 20 chr13:43551708-43551728 1.0000 20 chr15:85279556-85279576 1.0000 20 chr19:8223396-8223416 1.0000 20 chr9:80850736-80850756 1.0000 20 chr6:34641866-34641886 1.0000 20 chr19:11485053-11485073 1.0000 20 chr1:204482133-204482153 1.0000 20 chr17:1389963-1389983 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_KDM1A/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/KDM1A.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.247 C 0.252 G 0.251 T 0.251 Background letter frequencies (from file dataset with add-one prior applied): A 0.247 C 0.252 G 0.251 T 0.251 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TGTAATCC MEME-1 width = 8 sites = 8 llr = 80 E-value = 6.3e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTAATCC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::aa::: pos.-specific C :::::38a probability G :a:::::: matrix T a:a::83: bits 2.0 ***** * 1.8 ***** * 1.6 ***** * 1.4 ***** * Relative 1.2 ******** Entropy 1.0 ******** (14.4 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGTAATCC consensus CT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTAATCC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr9:36551006-36551026 5 1.54e-05 cgcc tgtaatcc cagctact chr22:35705512-35705532 1 1.54e-05 . tgtaatcc cagctaccct chr14:23399957-23399977 8 1.54e-05 tcacgcc tgtaatcc cagca chr4:24586639-24586659 5 1.54e-05 cgcc tgtaatcc caacgctt chr2:231466976-231466996 8 4.61e-05 tcacacc tgtaaccc cagca chr7:98400706-98400726 1 4.61e-05 . tgtaattc cagcactttg chr11:118692041-11869206 6 4.61e-05 atgcc tgtaaccc cagccct chr11:95131072-95131092 11 4.61e-05 atatgtttac tgtaattc ct -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTAATCC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:36551006-36551026 1.5e-05 4_[+1]_8 chr22:35705512-35705532 1.5e-05 [+1]_12 chr14:23399957-23399977 1.5e-05 7_[+1]_5 chr4:24586639-24586659 1.5e-05 4_[+1]_8 chr2:231466976-231466996 4.6e-05 7_[+1]_5 chr7:98400706-98400726 4.6e-05 [+1]_12 chr11:118692041-11869206 4.6e-05 5_[+1]_7 chr11:95131072-95131092 4.6e-05 10_[+1]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTAATCC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTAATCC width=8 seqs=8 chr9:36551006-36551026 ( 5) TGTAATCC 1 chr22:35705512-35705532 ( 1) TGTAATCC 1 chr14:23399957-23399977 ( 8) TGTAATCC 1 chr4:24586639-24586659 ( 5) TGTAATCC 1 chr2:231466976-231466996 ( 8) TGTAACCC 1 chr7:98400706-98400726 ( 1) TGTAATTC 1 chr11:118692041-11869206 ( 6) TGTAACCC 1 chr11:95131072-95131092 ( 11) TGTAATTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTAATCC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.66267 E= 6.3e+001 -965 -965 -965 200 -965 -965 199 -965 -965 -965 -965 200 202 -965 -965 -965 202 -965 -965 -965 -965 -1 -965 158 -965 157 -965 0 -965 199 -965 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTAATCC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 6.3e+001 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.250000 0.000000 0.750000 0.000000 0.750000 0.000000 0.250000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTAATCC MEME-1 regular expression -------------------------------------------------------------------------------- TGTAA[TC][CT]C -------------------------------------------------------------------------------- Time 2.02 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGTGTAY MEME-2 width = 8 sites = 10 llr = 89 E-value = 2.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGTGTAY MEME-2 Description -------------------------------------------------------------------------------- Simplified A 1:::::a: pos.-specific C ::::12:5 probability G 8:a:9::: matrix T 1a:a:8:5 bits 2.0 *** * 1.8 *** * 1.6 **** * 1.4 **** * Relative 1.2 ****** Entropy 1.0 ******** (12.9 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTGTGTAC consensus C T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTAY MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr8:28259134-28259154 2 3.11e-05 t gtgtgtac gtatgtgtgt chr16:27411156-27411176 13 3.11e-05 ggctgtcact gtgtgtat chr8:28258932-28258952 13 3.11e-05 gtgcgcgagt gtgtgtac chr20:23624892-23624912 5 3.11e-05 ctgc gtgtgtac acatgtgt chr17:77337229-77337249 11 3.11e-05 cgtatgcaca gtgtgtac ac chr22:51059461-51059481 12 6.23e-05 gtgaatgtga gtgtgcat g chr11:67417148-67417168 6 6.23e-05 gtatt gtgtgcat gtgtgca chr1:183446820-183446840 5 1.24e-04 gcat atgtgtat atatgcat chr20:61644714-61644734 8 1.24e-04 gaatcct ttgtgtat cttaa chr19:7766530-7766550 5 1.55e-04 TGGG GTGTCTAC TGGTAAGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTAY MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:28259134-28259154 3.1e-05 1_[+2]_11 chr16:27411156-27411176 3.1e-05 12_[+2] chr8:28258932-28258952 3.1e-05 12_[+2] chr20:23624892-23624912 3.1e-05 4_[+2]_8 chr17:77337229-77337249 3.1e-05 10_[+2]_2 chr22:51059461-51059481 6.2e-05 11_[+2]_1 chr11:67417148-67417168 6.2e-05 5_[+2]_7 chr1:183446820-183446840 0.00012 4_[+2]_8 chr20:61644714-61644734 0.00012 7_[+2]_5 chr19:7766530-7766550 0.00016 4_[+2]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTAY MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGTGTAY width=8 seqs=10 chr8:28259134-28259154 ( 2) GTGTGTAC 1 chr16:27411156-27411176 ( 13) GTGTGTAT 1 chr8:28258932-28258952 ( 13) GTGTGTAC 1 chr20:23624892-23624912 ( 5) GTGTGTAC 1 chr17:77337229-77337249 ( 11) GTGTGTAC 1 chr22:51059461-51059481 ( 12) GTGTGCAT 1 chr11:67417148-67417168 ( 6) GTGTGCAT 1 chr1:183446820-183446840 ( 5) ATGTGTAT 1 chr20:61644714-61644734 ( 8) TTGTGTAT 1 chr19:7766530-7766550 ( 5) GTGTCTAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTAY MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.2854 E= 2.1e+003 -130 -997 167 -132 -997 -997 -997 200 -997 -997 199 -997 -997 -997 -997 200 -997 -133 184 -997 -997 -33 -997 167 202 -997 -997 -997 -997 99 -997 100 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTAY MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 2.1e+003 0.100000 0.000000 0.800000 0.100000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.100000 0.900000 0.000000 0.000000 0.200000 0.000000 0.800000 1.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTAY MEME-2 regular expression -------------------------------------------------------------------------------- GTGTG[TC]A[CT] -------------------------------------------------------------------------------- Time 3.02 secs. ******************************************************************************** ******************************************************************************** MOTIF RSACASAH MEME-3 width = 8 sites = 15 llr = 117 E-value = 1.8e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif RSACASAH MEME-3 Description -------------------------------------------------------------------------------- Simplified A 6:a:a:a3 pos.-specific C :7:a:5:4 probability G 43:::5:1 matrix T :::::::2 bits 2.0 *** * 1.8 *** * 1.6 *** * 1.4 *** * Relative 1.2 *** * Entropy 1.0 ******* (11.3 bits) 0.8 ******* 0.6 ******* 0.4 ******* 0.2 ******** 0.0 -------- Multilevel ACACAGAC consensus GG C A sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RSACASAH MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr15:65184605-65184625 5 1.50e-05 acaa acacagac atacagtt chr4:40994019-40994039 7 3.00e-05 GACACC ACACACAC CACACT chr1:27815976-27815996 3 3.00e-05 ac acacacac acacacaGTG chr7:50346585-50346605 12 3.00e-05 CAGAGCGTGC ACACACAC A chr4:40517757-40517777 5 4.46e-05 AGAA ACACAGAA GTTATTTC chr7:66385936-66385956 12 8.98e-05 tgcactcact gcacacac c chr2:110270941-110270961 7 8.98e-05 ccgtat gcacacac ttcaca chr6:167344225-167344245 7 1.64e-04 taatgt acacacat gcacac chr10:98561373-98561393 7 2.09e-04 agaatg agacagaa gacaga chrX:222776-222796 3 2.39e-04 CA GCACAGAT TAGGCACCTG chr12:109248856-10924887 13 2.69e-04 TGTATCTagt agacacaa chr3:5029385-5029405 11 3.44e-04 tgaactgtag gcacagag ag chr19:10526502-10526522 5 3.44e-04 aggt ggacagaa ctgaaagt chr20:42379536-42379556 12 4.04e-04 agagtgtttc agacagag g chr9:127017638-127017658 8 4.19e-04 tgacctg ggacagat tgctt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RSACASAH MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:65184605-65184625 1.5e-05 4_[+3]_8 chr4:40994019-40994039 3e-05 6_[+3]_6 chr1:27815976-27815996 3e-05 2_[+3]_10 chr7:50346585-50346605 3e-05 11_[+3]_1 chr4:40517757-40517777 4.5e-05 4_[+3]_8 chr7:66385936-66385956 9e-05 11_[+3]_1 chr2:110270941-110270961 9e-05 6_[+3]_6 chr6:167344225-167344245 0.00016 6_[+3]_6 chr10:98561373-98561393 0.00021 6_[+3]_6 chrX:222776-222796 0.00024 2_[+3]_10 chr12:109248856-10924887 0.00027 12_[+3] chr3:5029385-5029405 0.00034 10_[+3]_2 chr19:10526502-10526522 0.00034 4_[+3]_8 chr20:42379536-42379556 0.0004 11_[+3]_1 chr9:127017638-127017658 0.00042 7_[+3]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RSACASAH MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RSACASAH width=8 seqs=15 chr15:65184605-65184625 ( 5) ACACAGAC 1 chr4:40994019-40994039 ( 7) ACACACAC 1 chr1:27815976-27815996 ( 3) ACACACAC 1 chr7:50346585-50346605 ( 12) ACACACAC 1 chr4:40517757-40517777 ( 5) ACACAGAA 1 chr7:66385936-66385956 ( 12) GCACACAC 1 chr2:110270941-110270961 ( 7) GCACACAC 1 chr6:167344225-167344245 ( 7) ACACACAT 1 chr10:98561373-98561393 ( 7) AGACAGAA 1 chrX:222776-222796 ( 3) GCACAGAT 1 chr12:109248856-10924887 ( 13) AGACACAA 1 chr3:5029385-5029405 ( 11) GCACAGAG 1 chr19:10526502-10526522 ( 5) GGACAGAA 1 chr20:42379536-42379556 ( 12) AGACAGAG 1 chr9:127017638-127017658 ( 8) GGACAGAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RSACASAH MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.0312 E= 1.8e+003 128 -1055 67 -1055 -1055 141 41 -1055 202 -1055 -1055 -1055 -1055 199 -1055 -1055 202 -1055 -1055 -1055 -1055 89 109 -1055 202 -1055 -1055 -1055 11 67 -91 -33 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RSACASAH MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 1.8e+003 0.600000 0.000000 0.400000 0.000000 0.000000 0.666667 0.333333 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.466667 0.533333 0.000000 1.000000 0.000000 0.000000 0.000000 0.266667 0.400000 0.133333 0.200000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RSACASAH MEME-3 regular expression -------------------------------------------------------------------------------- [AG][CG]ACA[GC]A[CAT] -------------------------------------------------------------------------------- Time 3.87 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAATAAA MEME-4 width = 8 sites = 2 llr = 22 E-value = 3.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAATAAA MEME-4 Description -------------------------------------------------------------------------------- Simplified A aaaa:aaa pos.-specific C :::::::: probability G :::::::: matrix T ::::a::: bits 2.0 ******** 1.8 ******** 1.6 ******** 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (16.1 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAATAAA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAATAAA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:142926598-142926618 10 1.41e-05 GTTATCAAg aaaataaa tgg chr19:9945348-9945368 13 1.41e-05 AGCCCTGCAA AAAATAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAATAAA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:142926598-142926618 1.4e-05 9_[+4]_3 chr19:9945348-9945368 1.4e-05 12_[+4] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAATAAA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAATAAA width=8 seqs=2 chr3:142926598-142926618 ( 10) AAAATAAA 1 chr19:9945348-9945368 ( 13) AAAATAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAATAAA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.6653 E= 3.5e+003 201 -765 -765 -765 201 -765 -765 -765 201 -765 -765 -765 201 -765 -765 -765 -765 -765 -765 199 201 -765 -765 -765 201 -765 -765 -765 201 -765 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAATAAA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.5e+003 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAATAAA MEME-4 regular expression -------------------------------------------------------------------------------- AAAATAAA -------------------------------------------------------------------------------- Time 4.65 secs. ******************************************************************************** ******************************************************************************** MOTIF SAGRVAGG MEME-5 width = 8 sites = 11 llr = 93 E-value = 3.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif SAGRVAGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :a:43a:: pos.-specific C 5:::3::: probability G 5:a64:aa matrix T ::::1::: bits 2.0 ** *** 1.8 ** *** 1.6 ** *** 1.4 ** *** Relative 1.2 ** *** Entropy 1.0 **** *** (12.2 bits) 0.8 **** *** 0.6 **** *** 0.4 **** *** 0.2 ******** 0.0 -------- Multilevel GAGGGAGG consensus C AA sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGRVAGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:51966553-51966573 4 1.53e-05 gct gagggagg agaatcact chr14:95794625-95794645 11 6.09e-05 tcccaggcct gaggcagg ag chr19:4724548-4724568 8 6.09e-05 AAGGCAG GAGGAAGG CGGAA chr12:133044357-13304437 13 6.09e-05 tcgggaggct gaggcagg chr17:16312301-16312321 4 6.09e-05 gct gaggcagg agaatcact chr19:47747430-47747450 12 1.06e-04 GGGCAGACTT CAGGAAGG A chr11:66314111-66314131 6 1.21e-04 agact cagagagg tcccgtg chr17:79269546-79269566 1 1.21e-04 . CAGAGAGG CTCGGCCACT chr9:123838109-123838129 13 1.21e-04 cactgaggac cagagagg chr19:46148760-46148780 13 1.81e-04 CCAGGATGCC CAGAAAGG chr16:11763242-11763262 11 1.97e-04 CGCGGGAGAG GAGGTAGG GA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGRVAGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:51966553-51966573 1.5e-05 3_[+5]_9 chr14:95794625-95794645 6.1e-05 10_[+5]_2 chr19:4724548-4724568 6.1e-05 7_[+5]_5 chr12:133044357-13304437 6.1e-05 12_[+5] chr17:16312301-16312321 6.1e-05 3_[+5]_9 chr19:47747430-47747450 0.00011 11_[+5]_1 chr11:66314111-66314131 0.00012 5_[+5]_7 chr17:79269546-79269566 0.00012 [+5]_12 chr9:123838109-123838129 0.00012 12_[+5] chr19:46148760-46148780 0.00018 12_[+5] chr16:11763242-11763262 0.0002 10_[+5]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGRVAGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SAGRVAGG width=8 seqs=11 chr1:51966553-51966573 ( 4) GAGGGAGG 1 chr14:95794625-95794645 ( 11) GAGGCAGG 1 chr19:4724548-4724568 ( 8) GAGGAAGG 1 chr12:133044357-13304437 ( 13) GAGGCAGG 1 chr17:16312301-16312321 ( 4) GAGGCAGG 1 chr19:47747430-47747450 ( 12) CAGGAAGG 1 chr11:66314111-66314131 ( 6) CAGAGAGG 1 chr17:79269546-79269566 ( 1) CAGAGAGG 1 chr9:123838109-123838129 ( 13) CAGAGAGG 1 chr19:46148760-46148780 ( 13) CAGAAAGG 1 chr16:11763242-11763262 ( 11) GAGGTAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGRVAGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.23087 E= 3.9e+003 -1010 85 112 -1010 202 -1010 -1010 -1010 -1010 -1010 199 -1010 56 -1010 134 -1010 14 12 53 -146 202 -1010 -1010 -1010 -1010 -1010 199 -1010 -1010 -1010 199 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGRVAGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 3.9e+003 0.000000 0.454545 0.545455 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.363636 0.000000 0.636364 0.000000 0.272727 0.272727 0.363636 0.090909 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGRVAGG MEME-5 regular expression -------------------------------------------------------------------------------- [GC]AG[GA][GAC]AGG -------------------------------------------------------------------------------- Time 5.60 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:45129179-45129199 8.12e-01 20 chr7:50346585-50346605 2.22e-03 11_[+3(3.00e-05)]_1 chr1:27815976-27815996 4.59e-02 [+3(3.00e-05)]_[+3(3.00e-05)]_4 chr15:72598678-72598698 8.43e-01 20 chrX:154493593-154493613 8.53e-01 20 chr3:52272674-52272694 4.34e-02 20 chr17:74449485-74449505 6.89e-01 20 chr16:75033978-75033998 8.67e-01 20 chr10:112680213-11268023 9.86e-01 20 chr8:22858304-22858324 9.86e-01 20 chr9:116502244-116502264 7.50e-01 20 chr19:8257399-8257419 8.97e-01 20 chr7:30029934-30029954 2.68e-01 20 chr19:4633217-4633237 1.28e-01 20 chr20:61644714-61644734 6.94e-02 20 chr7:2442746-2442766 7.26e-01 20 chr1:51956149-51956169 1.46e-01 20 chr1:174157819-174157839 3.08e-01 20 chr11:118797524-11879754 9.06e-01 20 chr16:89252476-89252496 4.18e-01 20 chr8:52814947-52814967 1.18e-01 20 chr12:53739173-53739193 9.72e-01 20 chr1:23920820-23920840 9.61e-01 20 chr5:169815470-169815490 6.62e-01 20 chr17:77337229-77337249 1.16e-02 10_[+2(3.11e-05)]_2 chr1:155829437-155829457 9.99e-01 20 chrX:1641737-1641757 9.79e-01 20 chr9:139650309-139650329 2.90e-01 20 chr17:16472763-16472783 8.26e-01 20 chr10:98561373-98561393 2.01e-02 20 chr17:38279847-38279867 9.49e-01 20 chr19:45932340-45932360 6.29e-02 20 chr2:110270941-110270961 1.15e-02 6_[+3(8.98e-05)]_6 chr4:24586639-24586659 3.13e-02 4_[+1(1.54e-05)]_8 chr19:14152303-14152323 3.03e-01 20 chr2:74254798-74254818 7.86e-01 20 chr20:633543-633563 9.94e-01 20 chr14:53607415-53607435 3.08e-01 20 chr8:131291246-131291266 5.99e-01 20 chr5:148997407-148997427 7.04e-01 20 chr9:126979985-126980005 8.25e-01 20 chr5:149893576-149893596 5.20e-01 20 chr2:61199374-61199394 9.86e-01 20 chr5:180231258-180231278 8.67e-01 20 chr19:16370493-16370513 9.78e-01 20 chr2:70016353-70016373 6.99e-01 20 chr19:10526502-10526522 4.04e-02 20 chr3:5029385-5029405 2.57e-02 20 chr16:3628493-3628513 7.02e-01 20 chr12:108713214-10871323 3.32e-01 20 chr12:121695285-12169530 2.85e-01 20 chrX:222776-222796 9.04e-02 20 chr22:50050628-50050648 5.85e-01 20 chr12:31886697-31886717 6.90e-01 20 chr20:23624892-23624912 4.54e-03 4_[+2(3.11e-05)]_8 chr9:123838109-123838129 2.39e-02 20 chr19:6777632-6777652 4.54e-01 20 chr11:67417148-67417168 1.28e-01 5_[+2(6.23e-05)]_7 chr8:134511320-134511340 5.74e-01 20 chr6:90995524-90995544 5.02e-01 20 chr12:113508567-11350858 7.18e-01 20 chr19:2475637-2475657 8.42e-02 20 chr1:15742273-15742293 9.56e-01 20 chr6:90103592-90103612 4.67e-02 20 chr18:48724885-48724905 1.00e+00 20 chr4:146730079-146730099 8.18e-01 20 chr19:4233675-4233695 9.33e-01 20 chr19:2051699-2051719 5.60e-01 20 chr19:9945348-9945368 1.17e-02 12_[+4(1.41e-05)] chr17:16312301-16312321 3.02e-02 3_[+5(6.09e-05)]_9 chr9:127017638-127017658 1.70e-01 20 chr11:114479310-11447933 9.66e-01 20 chr8:28258932-28258952 5.71e-02 12_[+2(3.11e-05)] chr10:130262781-13026280 9.98e-01 20 chr10:32662620-32662640 8.95e-01 20 chr9:71650488-71650508 7.30e-01 20 chr15:63789613-63789633 2.28e-01 20 chr16:69458043-69458063 5.36e-02 20 chr16:27411156-27411176 2.40e-02 12_[+2(3.11e-05)] chr19:17858142-17858162 6.97e-01 20 chr22:51059461-51059481 5.03e-02 11_[+2(6.23e-05)]_1 chr19:46209656-46209676 7.19e-01 20 chr1:249240230-249240250 9.85e-01 20 chr1:156195940-156195960 8.26e-01 20 chr14:76139624-76139644 9.74e-01 20 chr16:66865158-66865178 2.11e-01 20 chr14:68839983-68840003 9.80e-01 20 chr19:7246786-7246806 3.39e-01 20 chr1:12118504-12118524 1.72e-01 20 chr5:157288805-157288825 4.98e-01 20 chr10:65115154-65115174 5.53e-01 20 chr19:1398047-1398067 6.94e-01 20 chr3:142926598-142926618 3.21e-02 9_[+4(1.41e-05)]_3 chr17:29465495-29465515 8.83e-01 20 chr15:71185295-71185315 9.42e-01 20 chr16:11763242-11763262 1.84e-01 20 chr22:43062119-43062139 6.02e-01 20 chr17:8771637-8771657 9.52e-01 20 chr19:7179061-7179081 6.74e-02 20 chr4:40517757-40517777 1.44e-02 4_[+3(4.46e-05)]_8 chr17:75490543-75490563 9.65e-01 20 chr14:23399957-23399977 2.86e-02 7_[+1(1.54e-05)]_5 chr8:74903255-74903275 9.17e-01 20 chr15:90705454-90705474 9.19e-01 20 chr19:39893184-39893204 2.98e-01 20 chr22:35524924-35524944 9.77e-01 20 chr22:35705512-35705532 5.44e-02 [+1(1.54e-05)]_12 chr12:133044357-13304437 1.02e-01 12_[+5(6.09e-05)] chr17:42402525-42402545 9.96e-01 20 chr3:53290299-53290319 9.12e-01 20 chr19:1037277-1037297 9.99e-01 20 chrX:1013318-1013338 4.38e-01 20 chr9:126101120-126101140 2.15e-01 20 chr8:17941803-17941823 8.12e-01 20 chr17:78549331-78549351 3.02e-01 20 chr22:21921825-21921845 7.71e-01 20 chr19:7242605-7242625 7.79e-01 20 chr19:46148760-46148780 1.87e-02 20 chr11:77849911-77849931 4.10e-01 20 chr12:121123155-12112317 2.25e-01 20 chr12:122102391-12210241 8.31e-01 20 chr20:32891445-32891465 9.73e-01 20 chr2:203499381-203499401 9.16e-01 20 chr4:40994019-40994039 7.73e-02 6_[+3(3.00e-05)]_6 chr2:197041336-197041356 1.58e-01 20 chr12:112124175-11212419 7.70e-01 20 chr2:71558494-71558514 7.90e-01 20 chr9:5581787-5581807 9.06e-02 20 chr17:79269546-79269566 5.38e-02 20 chr19:10527595-10527615 9.84e-01 20 chr9:136688103-136688123 7.26e-01 20 chr3:194870959-194870979 3.28e-01 20 chr19:17505822-17505842 9.77e-01 20 chr12:93561305-93561325 9.01e-01 20 chrX:118781780-118781800 7.48e-01 20 chr22:39545224-39545244 8.28e-01 20 chr11:95131072-95131092 1.11e-02 10_[+1(4.61e-05)]_2 chr10:14784329-14784349 8.69e-01 20 chr7:66385936-66385956 6.91e-02 11_[+3(8.98e-05)]_1 chr1:12261588-12261608 6.88e-01 20 chr11:118692041-11869206 5.72e-02 5_[+1(4.61e-05)]_7 chr19:17873609-17873629 3.15e-01 20 chr3:9994279-9994299 8.28e-01 20 chr5:176924951-176924971 4.14e-01 20 chr2:203249472-203249492 2.87e-01 20 chr19:16251927-16251947 5.87e-01 20 chr11:117868582-11786860 8.66e-01 20 chr19:12900137-12900157 9.77e-01 20 chr7:2670891-2670911 4.36e-01 20 chr19:10542033-10542053 2.83e-01 20 chr3:186741282-186741302 3.06e-01 20 chr17:80452848-80452868 9.10e-01 20 chr7:98400706-98400726 9.32e-02 [+1(4.61e-05)]_12 chr15:65184605-65184625 1.28e-02 4_[+3(1.50e-05)]_8 chr16:24032019-24032039 9.08e-01 20 chr19:6772134-6772154 4.51e-01 20 chr1:113178482-113178502 3.72e-01 20 chr20:49431151-49431171 5.69e-01 20 chr20:42379536-42379556 7.53e-03 20 chr16:89253309-89253329 9.32e-01 20 chr8:71092924-71092944 5.51e-01 20 chrX:7895950-7895970 9.56e-01 20 chr19:4724548-4724568 5.95e-02 7_[+5(6.09e-05)]_5 chr2:3612344-3612364 3.95e-01 20 chr12:739730-739750 9.63e-01 20 chr2:234159868-234159888 9.77e-01 20 chr19:2628106-2628126 3.82e-01 20 chr19:47747430-47747450 3.37e-02 20 chr4:38673334-38673354 8.72e-01 20 chr11:72687584-72687604 6.97e-01 20 chr19:1069049-1069069 9.84e-01 20 chr1:12221564-12221584 1.40e-01 20 chr12:123920092-12392011 5.16e-01 20 chr2:231466976-231466996 3.92e-02 7_[+1(4.61e-05)]_5 chr4:46501-46521 4.61e-01 20 chr11:82772827-82772847 9.93e-01 20 chr4:48199297-48199317 8.20e-01 20 chr19:18210622-18210642 9.56e-01 20 chr20:52353815-52353835 9.78e-01 20 chr3:72213566-72213586 5.89e-01 20 chr11:66314111-66314131 3.08e-02 20 chr17:65664466-65664486 5.95e-01 20 chr1:150540811-150540831 4.75e-01 20 chr1:179847148-179847168 2.95e-01 20 chr7:24995122-24995142 5.78e-01 20 chr5:139913125-139913145 8.57e-01 20 chr19:42387851-42387871 6.61e-01 20 chr6:167344225-167344245 3.30e-03 20 chr1:144932009-144932029 9.95e-01 20 chr22:41464868-41464888 6.92e-01 20 chr10:101491498-10149151 9.30e-02 20 chr14:78082032-78082052 9.91e-01 20 chr1:25345528-25345548 9.87e-01 20 chr17:8796572-8796592 7.88e-01 20 chr12:133113085-13311310 3.68e-01 20 chr17:53541168-53541188 8.98e-01 20 chr19:14691561-14691581 7.02e-01 20 chr12:109248856-10924887 2.96e-02 20 chr1:183446820-183446840 9.32e-02 20 chr9:36551006-36551026 3.38e-02 4_[+1(1.54e-05)]_8 chr10:104941715-10494173 8.71e-01 20 chr8:28259134-28259154 4.52e-02 1_[+2(3.11e-05)]_11 chr14:23479229-23479249 4.23e-01 20 chr12:111846036-11184605 6.77e-01 20 chr10:90020356-90020376 4.09e-01 20 chr3:113477380-113477400 8.39e-01 20 chr19:39826918-39826938 8.58e-01 20 chr5:116099412-116099432 9.91e-01 20 chr1:51966553-51966573 1.20e-02 3_[+5(1.53e-05)]_9 chr19:3812177-3812197 1.00e+00 20 chr6:7107385-7107405 1.78e-01 20 chr3:101441539-101441559 8.50e-01 20 chr14:95794625-95794645 9.17e-02 10_[+5(6.09e-05)]_2 chrX:53101009-53101029 4.09e-01 20 chr22:50223678-50223698 3.16e-01 20 chrX:2184125-2184145 7.26e-02 20 chr6:82706418-82706438 1.56e-01 20 chr19:7766530-7766550 1.26e-01 20 chr7:4681567-4681587 6.41e-01 20 chr22:40306219-40306239 4.59e-01 20 chr10:49880789-49880809 7.07e-02 20 chr11:120575884-12057590 6.65e-01 20 chr7:73645119-73645139 7.29e-01 20 chr7:6413641-6413661 9.91e-01 20 chr16:23853515-23853535 7.18e-01 20 chr12:133044556-13304457 9.37e-01 20 chr10:64492640-64492660 9.11e-01 20 chr12:125481631-12548165 7.76e-02 20 chr5:158384251-158384271 8.41e-01 20 chrX:51483494-51483514 6.69e-01 20 chr3:194871163-194871183 9.94e-01 20 chr14:71824956-71824976 8.53e-01 20 chr17:44254440-44254460 5.27e-01 20 chr10:12164416-12164436 3.61e-01 20 chr8:98643422-98643442 7.68e-01 20 chr6:26359068-26359088 7.04e-01 20 chr6:30875555-30875575 9.31e-01 20 chr20:43275506-43275526 5.27e-01 20 chr9:4465503-4465523 5.11e-01 20 chr10:64415701-64415721 2.90e-02 20 chr1:163301875-163301895 8.21e-01 20 chr20:48532686-48532706 8.69e-01 20 chr13:43551708-43551728 4.97e-01 20 chr15:85279556-85279576 9.35e-01 20 chr19:8223396-8223416 2.06e-01 20 chr9:80850736-80850756 9.90e-01 20 chr6:34641866-34641886 8.95e-01 20 chr19:11485053-11485073 1.65e-01 20 chr1:204482133-204482153 6.03e-01 20 chr17:1389963-1389983 9.47e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n05.farnam.hpc.yale.internal ********************************************************************************