******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/JUND.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2:22147687-22147707 1.0000 20 chr14:105492614-10549263 1.0000 20 chr9:94158316-94158336 1.0000 20 chr11:100796826-10079684 1.0000 20 chr18:3250880-3250900 1.0000 20 chr14:21732439-21732459 1.0000 20 chr11:111203102-11120312 1.0000 20 chr14:65943545-65943565 1.0000 20 chr2:120331901-120331921 1.0000 20 chr4:154343362-154343382 1.0000 20 chr9:74473923-74473943 1.0000 20 chr3:46401695-46401715 1.0000 20 chr11:34655790-34655810 1.0000 20 chr15:101728868-10172888 1.0000 20 chr6:16855386-16855406 1.0000 20 chr9:5480151-5480171 1.0000 20 chr18:29733226-29733246 1.0000 20 chr8:143449683-143449703 1.0000 20 chr11:75619886-75619906 1.0000 20 chr20:52621078-52621098 1.0000 20 chr2:207226296-207226316 1.0000 20 chr10:131938887-13193890 1.0000 20 chr4:185339255-185339275 1.0000 20 chr9:93550513-93550533 1.0000 20 chr4:42462195-42462215 1.0000 20 chr4:101942307-101942327 1.0000 20 chr4:87878546-87878566 1.0000 20 chrX:71361611-71361631 1.0000 20 chr4:113249230-113249250 1.0000 20 chr20:20469923-20469943 1.0000 20 chr2:20565363-20565383 1.0000 20 chr5:130731845-130731865 1.0000 20 chr11:74814687-74814707 1.0000 20 chr8:59555048-59555068 1.0000 20 chr15:57445659-57445679 1.0000 20 chr1:7278523-7278543 1.0000 20 chr11:83295224-83295244 1.0000 20 chr11:4721122-4721142 1.0000 20 chr2:11667348-11667368 1.0000 20 chr6:24743629-24743649 1.0000 20 chr14:68147020-68147040 1.0000 20 chr9:20570906-20570926 1.0000 20 chr1:170209748-170209768 1.0000 20 chr17:35749396-35749416 1.0000 20 chr1:79507978-79507998 1.0000 20 chr2:74811347-74811367 1.0000 20 chr6:163422578-163422598 1.0000 20 chr3:47507889-47507909 1.0000 20 chr17:63023659-63023679 1.0000 20 chr13:24325574-24325594 1.0000 20 chr16:84785746-84785766 1.0000 20 chr2:20716879-20716899 1.0000 20 chr6:154619613-154619633 1.0000 20 chr15:64736729-64736749 1.0000 20 chr2:204736411-204736431 1.0000 20 chr6:252143-252163 1.0000 20 chr4:160028890-160028910 1.0000 20 chr2:58262664-58262684 1.0000 20 chr2:161080787-161080807 1.0000 20 chr11:117869058-11786907 1.0000 20 chr13:31742516-31742536 1.0000 20 chr15:37123791-37123811 1.0000 20 chr19:2962198-2962218 1.0000 20 chr7:50516676-50516696 1.0000 20 chr7:47592390-47592410 1.0000 20 chr2:64341393-64341413 1.0000 20 chr10:101934643-10193466 1.0000 20 chr15:81344567-81344587 1.0000 20 chr20:24819968-24819988 1.0000 20 chr8:84860682-84860702 1.0000 20 chr11:60296147-60296167 1.0000 20 chr2:101889069-101889089 1.0000 20 chr9:94121512-94121532 1.0000 20 chr5:43245064-43245084 1.0000 20 chr18:11325386-11325406 1.0000 20 chr18:13019449-13019469 1.0000 20 chr15:56532802-56532822 1.0000 20 chr17:46588582-46588602 1.0000 20 chr11:121078396-12107841 1.0000 20 chr12:118473535-11847355 1.0000 20 chr11:102239378-10223939 1.0000 20 chr3:108012872-108012892 1.0000 20 chr3:194614553-194614573 1.0000 20 chr7:156711549-156711569 1.0000 20 chr6:133071993-133072013 1.0000 20 chr2:33709458-33709478 1.0000 20 chr2:96205671-96205691 1.0000 20 chr2:98528032-98528052 1.0000 20 chr3:177032892-177032912 1.0000 20 chr12:12377374-12377394 1.0000 20 chr11:87913319-87913339 1.0000 20 chr6:155095139-155095159 1.0000 20 chr10:17697726-17697746 1.0000 20 chr7:117421018-117421038 1.0000 20 chr3:61167756-61167776 1.0000 20 chr14:76139906-76139926 1.0000 20 chr1:23440596-23440616 1.0000 20 chr19:11205897-11205917 1.0000 20 chr18:43830634-43830654 1.0000 20 chr9:111873178-111873198 1.0000 20 chr17:25566258-25566278 1.0000 20 chr11:128835567-12883558 1.0000 20 chr14:22933487-22933507 1.0000 20 chr8:79607190-79607210 1.0000 20 chr2:85165807-85165827 1.0000 20 chr14:73757174-73757194 1.0000 20 chr3:144014189-144014209 1.0000 20 chr10:12064809-12064829 1.0000 20 chr2:7898424-7898444 1.0000 20 chr11:10548960-10548980 1.0000 20 chr11:9484840-9484860 1.0000 20 chr2:145006703-145006723 1.0000 20 chr11:36376076-36376096 1.0000 20 chr1:172366606-172366626 1.0000 20 chr4:14159048-14159068 1.0000 20 chr7:98393957-98393977 1.0000 20 chr4:53508272-53508292 1.0000 20 chr1:161714057-161714077 1.0000 20 chr10:98085941-98085961 1.0000 20 chr12:50641021-50641041 1.0000 20 chr2:64927450-64927470 1.0000 20 chr1:159091916-159091936 1.0000 20 chr13:102279462-10227948 1.0000 20 chr4:113120863-113120883 1.0000 20 chr4:56484153-56484173 1.0000 20 chr9:115141688-115141708 1.0000 20 chr2:101923420-101923440 1.0000 20 chr4:146950489-146950509 1.0000 20 chr3:193583294-193583314 1.0000 20 chr5:123919624-123919644 1.0000 20 chr3:31796314-31796334 1.0000 20 chr19:36202368-36202388 1.0000 20 chr12:29317898-29317918 1.0000 20 chr2:32415060-32415080 1.0000 20 chr10:17274508-17274528 1.0000 20 chr9:125227222-125227242 1.0000 20 chr5:67366670-67366690 1.0000 20 chr12:99775983-99776003 1.0000 20 chr11:132227825-13222784 1.0000 20 chr2:182857700-182857720 1.0000 20 chr2:53979079-53979099 1.0000 20 chr2:6966760-6966780 1.0000 20 chr5:167676232-167676252 1.0000 20 chr4:103456719-103456739 1.0000 20 chr11:123323767-12332378 1.0000 20 chr5:60122689-60122709 1.0000 20 chr9:1536674-1536694 1.0000 20 chr12:109088635-10908865 1.0000 20 chr2:178071975-178071995 1.0000 20 chr5:67940903-67940923 1.0000 20 chr11:84000556-84000576 1.0000 20 chr4:145095749-145095769 1.0000 20 chr4:105887925-105887945 1.0000 20 chr2:223678320-223678340 1.0000 20 chr5:89226737-89226757 1.0000 20 chr15:59661988-59662008 1.0000 20 chr12:123013773-12301379 1.0000 20 chr10:98348935-98348955 1.0000 20 chr12:92528814-92528834 1.0000 20 chr11:18637806-18637826 1.0000 20 chr1:234867311-234867331 1.0000 20 chr1:1760052-1760072 1.0000 20 chr5:123863487-123863507 1.0000 20 chr12:27651307-27651327 1.0000 20 chr1:161676451-161676471 1.0000 20 chr5:168003177-168003197 1.0000 20 chr6:73393682-73393702 1.0000 20 chr18:2978363-2978383 1.0000 20 chr21:26563674-26563694 1.0000 20 chr6:56271196-56271216 1.0000 20 chr3:122252845-122252865 1.0000 20 chr11:33783169-33783189 1.0000 20 chr8:65543104-65543124 1.0000 20 chr12:96896510-96896530 1.0000 20 chr18:60774553-60774573 1.0000 20 chr8:28725953-28725973 1.0000 20 chr6:42471857-42471877 1.0000 20 chr8:29538615-29538635 1.0000 20 chr7:28077029-28077049 1.0000 20 chr6:155545391-155545411 1.0000 20 chr14:63938167-63938187 1.0000 20 chr22:40256343-40256363 1.0000 20 chr21:36012731-36012751 1.0000 20 chr20:17519349-17519369 1.0000 20 chr3:112770240-112770260 1.0000 20 chr15:77377915-77377935 1.0000 20 chr15:71969259-71969279 1.0000 20 chr5:5751773-5751793 1.0000 20 chr6:13764093-13764113 1.0000 20 chr6:161156813-161156833 1.0000 20 chr6:27832930-27832950 1.0000 20 chr1:117032108-117032128 1.0000 20 chr2:216896921-216896941 1.0000 20 chr14:53615486-53615506 1.0000 20 chr3:23872561-23872581 1.0000 20 chr2:231406977-231406997 1.0000 20 chr1:8156909-8156929 1.0000 20 chr2:13620343-13620363 1.0000 20 chr16:18957433-18957453 1.0000 20 chr6:73450058-73450078 1.0000 20 chr18:60035504-60035524 1.0000 20 chrX:13094937-13094957 1.0000 20 chr5:44886168-44886188 1.0000 20 chr1:227102973-227102993 1.0000 20 chr12:12799031-12799051 1.0000 20 chr2:157333498-157333518 1.0000 20 chr14:47238711-47238731 1.0000 20 chr2:33713921-33713941 1.0000 20 chr5:142418652-142418672 1.0000 20 chr5:52063798-52063818 1.0000 20 chr2:198080979-198080999 1.0000 20 chr6:45447735-45447755 1.0000 20 chr21:43889586-43889606 1.0000 20 chr11:48028394-48028414 1.0000 20 chr20:2759417-2759437 1.0000 20 chr4:143942697-143942717 1.0000 20 chr3:29046844-29046864 1.0000 20 chr3:124295517-124295537 1.0000 20 chr11:83324651-83324671 1.0000 20 chr7:128648958-128648978 1.0000 20 chr1:202457490-202457510 1.0000 20 chr3:98699803-98699823 1.0000 20 chr8:131820812-131820832 1.0000 20 chr11:118319203-11831922 1.0000 20 chr12:123205934-12320595 1.0000 20 chr3:154115991-154116011 1.0000 20 chr13:99202382-99202402 1.0000 20 chr3:188027705-188027725 1.0000 20 chr20:34482002-34482022 1.0000 20 chr8:105187925-105187945 1.0000 20 chr12:25261110-25261130 1.0000 20 chr12:40511864-40511884 1.0000 20 chr14:74552680-74552700 1.0000 20 chr20:55130113-55130133 1.0000 20 chr1:8664291-8664311 1.0000 20 chr3:159682333-159682353 1.0000 20 chr2:64965318-64965338 1.0000 20 chr5:118873629-118873649 1.0000 20 chr6:126231886-126231906 1.0000 20 chr18:9117408-9117428 1.0000 20 chr12:104856868-10485688 1.0000 20 chr14:63935185-63935205 1.0000 20 chr12:65054521-65054541 1.0000 20 chr2:28475401-28475421 1.0000 20 chr1:79659067-79659087 1.0000 20 chr7:44775182-44775202 1.0000 20 chr2:111858580-111858600 1.0000 20 chr12:65550298-65550318 1.0000 20 chr5:88120172-88120192 1.0000 20 chr3:170966793-170966813 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_JUND/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/JUND.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.314 C 0.188 G 0.189 T 0.309 Background letter frequencies (from file dataset with add-one prior applied): A 0.314 C 0.188 G 0.189 T 0.309 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TGASTCAT MEME-1 width = 8 sites = 64 llr = 514 E-value = 2.0e-073 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGASTCAT MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::a:::a1 pos.-specific C :::5:9:2 probability G :9:5:::2 matrix T a1::a::6 bits 2.4 2.2 1.9 * 1.7 * ** Relative 1.4 ******* Entropy 1.2 ******* (11.6 bits) 1.0 ******* 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGACTCAT consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:111858580-111858600 8 3.90e-05 TGATTGA TGAGTCAT TCAAG chr20:55130113-55130133 2 3.90e-05 A TGACTCAT CCCACTTAAA chr2:231406977-231406997 3 3.90e-05 GT TGACTCAT TTCTAGATGG chr2:216896921-216896941 5 3.90e-05 CTGT TGAGTCAT ACTTAGAA chr21:36012731-36012751 3 3.90e-05 gc tgagtcat aggataattc chr12:96896510-96896530 2 3.90e-05 G TGACTCAT TTTGAAAGCA chr5:168003177-168003197 5 3.90e-05 GTGA TGACTCAT ATTACAAC chr12:99775983-99776003 3 3.90e-05 GG TGAGTCAT AATGCCACTC chr12:29317898-29317918 7 3.90e-05 TAACGA TGACTCAT ACTGTT chr1:161714057-161714077 6 3.90e-05 tagta tgactcat ccttggt chr1:172366606-172366626 9 3.90e-05 AACCCCTG TGACTCAT CAGT chr11:87913319-87913339 6 3.90e-05 CAATT TGAGTCAT CTAGTAT chr18:11325386-11325406 12 3.90e-05 AATGACTGGC TGACTCAT G chr5:43245064-43245084 1 3.90e-05 . TGAGTCAT AAATTTGTGG chr13:31742516-31742536 9 3.90e-05 TACTGAAA TGACTCAT CTTT chr11:117869058-11786907 10 3.90e-05 ttctgattt tgagtcat agt chr2:20716879-20716899 9 3.90e-05 TCCCACAG TGACTCAT TTCA chr3:47507889-47507909 2 3.90e-05 a tgagtcat tcttgaacct chr4:101942307-101942327 9 3.90e-05 ggaggAAA TGACTCAT TCCA chr4:42462195-42462215 11 3.90e-05 TTTACTAGCC TGACTCAT AA chr4:185339255-185339275 11 3.90e-05 AGGCAGAATA TGAGTCAT TA chr11:75619886-75619906 4 3.90e-05 tct tgagtcat tttggtaga chr9:5480151-5480171 1 3.90e-05 . TGAGTCAT CTAGGTCTCT chr15:101728868-10172888 11 3.90e-05 TAGAGAAGCC TGACTCAT TT chr9:74473923-74473943 4 3.90e-05 TGA TGAGTCAT TTAGAAACC chr11:100796826-10079684 11 3.90e-05 AATCTTGTTA TGACTCAT CT chr14:105492614-10549263 7 3.90e-05 ATCTCC TGACTCat ctccgc chr2:22147687-22147707 2 3.90e-05 a tgagtcat ttctttcttg chrX:13094937-13094957 1 6.28e-05 . tgagtcag tcaaccctcc chr16:18957433-18957453 5 6.28e-05 ATTC TGACTCAG GCTTGGTT chr12:92528814-92528834 12 6.28e-05 GATGGGGATA TGACTCAG A chr4:53508272-53508292 8 6.28e-05 AATGAAG TGACTCAG CCCAA chr9:111873178-111873198 7 6.28e-05 tcagta tgagtcag cctatg chr7:47592390-47592410 13 6.28e-05 aagctagaaa tgagtcag chr11:74814687-74814707 9 6.28e-05 ACACACTA TGACTCAG AATG chr6:126231886-126231906 1 8.65e-05 . tgagtcac atgcaaattt chr20:2759417-2759437 10 8.65e-05 gtatctctt tgagtcac tgc chr15:71969259-71969279 11 8.65e-05 actacctgtt tgagtcac ta chr15:59661988-59662008 12 8.65e-05 ATTTTCCTTA TGAGTCAC A chr9:1536674-1536694 3 8.65e-05 AA TGACTCAC TTTAGATTCC chr11:132227825-13222784 8 8.65e-05 TTCGAGA TGAGTCAC AAGCG chr12:50641021-50641041 10 8.65e-05 cagctttag tgactcac ttc chr15:81344567-81344587 7 8.65e-05 tagata tgagtcac atcatc chr11:83295224-83295244 8 8.65e-05 GTCACAA TGAGTCAC TAAGG chr5:67366670-67366690 9 1.26e-04 TAAAATTC TGACTCAA TATG chr17:35749396-35749416 13 1.26e-04 AGAATAGCTA TGAGTCAA chr12:109088635-10908865 4 1.90e-04 GAA TTACTCAT ATATGAATT chr7:98393957-98393977 4 1.90e-04 CTG TTACTCAT TTGGAGAAC chr5:130731845-130731865 3 1.90e-04 AA TTACTCAT CTTCATCTGA chr21:26563674-26563694 7 2.29e-04 CATATA TCAGTCAT CATAAC chr3:31796314-31796334 10 2.29e-04 gatcttttc tcactcat gtt chr3:159682333-159682353 9 3.07e-04 cttagaca ttagtcag aaat chr2:157333498-157333518 6 3.07e-04 GTAAC TGAGTGAT TCATTTT chr6:13764093-13764113 5 3.07e-04 gttc ttactcag gactccac chr1:23440596-23440616 5 4.40e-04 ACTC TGGGTCAT TCTCAGTC chr3:108012872-108012892 5 5.05e-04 TGGA TGACTAAT TTCAGCCC chr3:98699803-98699823 3 6.47e-04 ct tgacacat acttggtgct chr5:167676232-167676252 3 6.47e-04 AA TGAGTGAG CGTAAGTATC chr2:53979079-53979099 2 6.47e-04 T TGACTCTT ATTCAAAGTA chr12:12377374-12377394 6 6.47e-04 CTAGG AGACTCAT TTCAGAA chr2:7898424-7898444 6 6.99e-04 ACCCA GGACTCAG ATTCTTA chr2:74811347-74811367 10 8.08e-04 ACTTTGATT TGAGTAAC AAG chr3:177032892-177032912 8 1.02e-03 TATGATA TTAGTCAA AACTT chr10:12064809-12064829 1 1.06e-03 . TCAGTCAA TAATGCCTCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:111858580-111858600 3.9e-05 7_[+1]_5 chr20:55130113-55130133 3.9e-05 1_[+1]_11 chr2:231406977-231406997 3.9e-05 2_[+1]_10 chr2:216896921-216896941 3.9e-05 4_[+1]_8 chr21:36012731-36012751 3.9e-05 2_[+1]_10 chr12:96896510-96896530 3.9e-05 1_[+1]_11 chr5:168003177-168003197 3.9e-05 4_[+1]_8 chr12:99775983-99776003 3.9e-05 2_[+1]_10 chr12:29317898-29317918 3.9e-05 6_[+1]_6 chr1:161714057-161714077 3.9e-05 5_[+1]_7 chr1:172366606-172366626 3.9e-05 8_[+1]_4 chr11:87913319-87913339 3.9e-05 5_[+1]_7 chr18:11325386-11325406 3.9e-05 11_[+1]_1 chr5:43245064-43245084 3.9e-05 [+1]_12 chr13:31742516-31742536 3.9e-05 8_[+1]_4 chr11:117869058-11786907 3.9e-05 9_[+1]_3 chr2:20716879-20716899 3.9e-05 8_[+1]_4 chr3:47507889-47507909 3.9e-05 1_[+1]_11 chr4:101942307-101942327 3.9e-05 8_[+1]_4 chr4:42462195-42462215 3.9e-05 10_[+1]_2 chr4:185339255-185339275 3.9e-05 10_[+1]_2 chr11:75619886-75619906 3.9e-05 3_[+1]_9 chr9:5480151-5480171 3.9e-05 [+1]_12 chr15:101728868-10172888 3.9e-05 10_[+1]_2 chr9:74473923-74473943 3.9e-05 3_[+1]_9 chr11:100796826-10079684 3.9e-05 10_[+1]_2 chr14:105492614-10549263 3.9e-05 6_[+1]_6 chr2:22147687-22147707 3.9e-05 1_[+1]_11 chrX:13094937-13094957 6.3e-05 [+1]_12 chr16:18957433-18957453 6.3e-05 4_[+1]_8 chr12:92528814-92528834 6.3e-05 11_[+1]_1 chr4:53508272-53508292 6.3e-05 7_[+1]_5 chr9:111873178-111873198 6.3e-05 6_[+1]_6 chr7:47592390-47592410 6.3e-05 12_[+1] chr11:74814687-74814707 6.3e-05 8_[+1]_4 chr6:126231886-126231906 8.7e-05 [+1]_12 chr20:2759417-2759437 8.7e-05 9_[+1]_3 chr15:71969259-71969279 8.7e-05 10_[+1]_2 chr15:59661988-59662008 8.7e-05 11_[+1]_1 chr9:1536674-1536694 8.7e-05 2_[+1]_10 chr11:132227825-13222784 8.7e-05 7_[+1]_5 chr12:50641021-50641041 8.7e-05 9_[+1]_3 chr15:81344567-81344587 8.7e-05 6_[+1]_6 chr11:83295224-83295244 8.7e-05 7_[+1]_5 chr5:67366670-67366690 0.00013 8_[+1]_4 chr17:35749396-35749416 0.00013 12_[+1] chr12:109088635-10908865 0.00019 3_[+1]_9 chr7:98393957-98393977 0.00019 3_[+1]_9 chr5:130731845-130731865 0.00019 2_[+1]_10 chr21:26563674-26563694 0.00023 6_[+1]_6 chr3:31796314-31796334 0.00023 9_[+1]_3 chr3:159682333-159682353 0.00031 8_[+1]_4 chr2:157333498-157333518 0.00031 5_[+1]_7 chr6:13764093-13764113 0.00031 4_[+1]_8 chr1:23440596-23440616 0.00044 4_[+1]_8 chr3:108012872-108012892 0.00051 4_[+1]_8 chr3:98699803-98699823 0.00065 2_[+1]_10 chr5:167676232-167676252 0.00065 2_[+1]_10 chr2:53979079-53979099 0.00065 1_[+1]_11 chr12:12377374-12377394 0.00065 5_[+1]_7 chr2:7898424-7898444 0.0007 5_[+1]_7 chr2:74811347-74811367 0.00081 9_[+1]_3 chr3:177032892-177032912 0.001 7_[+1]_5 chr10:12064809-12064829 0.0011 [+1]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGASTCAT width=8 seqs=64 chr2:111858580-111858600 ( 8) TGAGTCAT 1 chr20:55130113-55130133 ( 2) TGACTCAT 1 chr2:231406977-231406997 ( 3) TGACTCAT 1 chr2:216896921-216896941 ( 5) TGAGTCAT 1 chr21:36012731-36012751 ( 3) TGAGTCAT 1 chr12:96896510-96896530 ( 2) TGACTCAT 1 chr5:168003177-168003197 ( 5) TGACTCAT 1 chr12:99775983-99776003 ( 3) TGAGTCAT 1 chr12:29317898-29317918 ( 7) TGACTCAT 1 chr1:161714057-161714077 ( 6) TGACTCAT 1 chr1:172366606-172366626 ( 9) TGACTCAT 1 chr11:87913319-87913339 ( 6) TGAGTCAT 1 chr18:11325386-11325406 ( 12) TGACTCAT 1 chr5:43245064-43245084 ( 1) TGAGTCAT 1 chr13:31742516-31742536 ( 9) TGACTCAT 1 chr11:117869058-11786907 ( 10) TGAGTCAT 1 chr2:20716879-20716899 ( 9) TGACTCAT 1 chr3:47507889-47507909 ( 2) TGAGTCAT 1 chr4:101942307-101942327 ( 9) TGACTCAT 1 chr4:42462195-42462215 ( 11) TGACTCAT 1 chr4:185339255-185339275 ( 11) TGAGTCAT 1 chr11:75619886-75619906 ( 4) TGAGTCAT 1 chr9:5480151-5480171 ( 1) TGAGTCAT 1 chr15:101728868-10172888 ( 11) TGACTCAT 1 chr9:74473923-74473943 ( 4) TGAGTCAT 1 chr11:100796826-10079684 ( 11) TGACTCAT 1 chr14:105492614-10549263 ( 7) TGACTCAT 1 chr2:22147687-22147707 ( 2) TGAGTCAT 1 chrX:13094937-13094957 ( 1) TGAGTCAG 1 chr16:18957433-18957453 ( 5) TGACTCAG 1 chr12:92528814-92528834 ( 12) TGACTCAG 1 chr4:53508272-53508292 ( 8) TGACTCAG 1 chr9:111873178-111873198 ( 7) TGAGTCAG 1 chr7:47592390-47592410 ( 13) TGAGTCAG 1 chr11:74814687-74814707 ( 9) TGACTCAG 1 chr6:126231886-126231906 ( 1) TGAGTCAC 1 chr20:2759417-2759437 ( 10) TGAGTCAC 1 chr15:71969259-71969279 ( 11) TGAGTCAC 1 chr15:59661988-59662008 ( 12) TGAGTCAC 1 chr9:1536674-1536694 ( 3) TGACTCAC 1 chr11:132227825-13222784 ( 8) TGAGTCAC 1 chr12:50641021-50641041 ( 10) TGACTCAC 1 chr15:81344567-81344587 ( 7) TGAGTCAC 1 chr11:83295224-83295244 ( 8) TGAGTCAC 1 chr5:67366670-67366690 ( 9) TGACTCAA 1 chr17:35749396-35749416 ( 13) TGAGTCAA 1 chr12:109088635-10908865 ( 4) TTACTCAT 1 chr7:98393957-98393977 ( 4) TTACTCAT 1 chr5:130731845-130731865 ( 3) TTACTCAT 1 chr21:26563674-26563694 ( 7) TCAGTCAT 1 chr3:31796314-31796334 ( 10) TCACTCAT 1 chr3:159682333-159682353 ( 9) TTAGTCAG 1 chr2:157333498-157333518 ( 6) TGAGTGAT 1 chr6:13764093-13764113 ( 5) TTACTCAG 1 chr1:23440596-23440616 ( 5) TGGGTCAT 1 chr3:108012872-108012892 ( 5) TGACTAAT 1 chr3:98699803-98699823 ( 3) TGACACAT 1 chr5:167676232-167676252 ( 3) TGAGTGAG 1 chr2:53979079-53979099 ( 2) TGACTCTT 1 chr12:12377374-12377394 ( 6) AGACTCAT 1 chr2:7898424-7898444 ( 6) GGACTCAG 1 chr2:74811347-74811367 ( 10) TGAGTAAC 1 chr3:177032892-177032912 ( 8) TTAGTCAA 1 chr10:12064809-12064829 ( 1) TCAGTCAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 6.97674 E= 2.0e-073 -433 -1264 -360 165 -1264 -200 218 -172 165 -1264 -360 -1264 -1264 141 140 -1264 -433 -1264 -1264 167 -333 232 -260 -1264 165 -1264 -1264 -430 -233 -26 -14 98 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 64 E= 2.0e-073 0.015625 0.000000 0.015625 0.968750 0.000000 0.046875 0.859375 0.093750 0.984375 0.000000 0.015625 0.000000 0.000000 0.500000 0.500000 0.000000 0.015625 0.000000 0.000000 0.984375 0.031250 0.937500 0.031250 0.000000 0.984375 0.000000 0.000000 0.015625 0.062500 0.156250 0.171875 0.609375 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAT MEME-1 regular expression -------------------------------------------------------------------------------- TGA[CG]TCAT -------------------------------------------------------------------------------- Time 1.97 secs. ******************************************************************************** ******************************************************************************** MOTIF ARATGACT MEME-2 width = 8 sites = 16 llr = 134 E-value = 1.7e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif ARATGACT MEME-2 Description -------------------------------------------------------------------------------- Simplified A 869::9:: pos.-specific C 1:1::1a: probability G 24::a1:1 matrix T :::a:::9 bits 2.4 * * 2.2 * * 1.9 * * 1.7 ** * Relative 1.4 *** * Entropy 1.2 ****** (12.1 bits) 1.0 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AAATGACT consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARATGACT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr14:74552680-74552700 13 5.28e-05 GGAGACCAAA AGATGACT chr12:12799031-12799051 13 5.28e-05 CCAACTCTAG AAATGACT chr18:60774553-60774573 13 5.28e-05 CATATTTCAG AAATGACT chr12:27651307-27651327 5 5.28e-05 TTTT AGATGACT TACTTCTG chr3:193583294-193583314 1 5.28e-05 . AAATGACT GTATCTCAGA chr18:11325386-11325406 1 5.28e-05 . AAATGACT GGCTGACTCA chr14:21732439-21732459 13 5.28e-05 TCTATACTAG AGATGACT chr12:65054521-65054541 13 8.46e-05 ATTTCTTTCA GGATGACT chr5:123919624-123919644 11 8.46e-05 ATCAACTAGA GAATGACT CA chr2:64927450-64927470 11 8.46e-05 AAACAGTTTT GAATGACT AC chr6:27832930-27832950 9 1.17e-04 GCGATTCT AGATGACG TCAT chr18:43830634-43830654 9 1.17e-04 gcaaaacc agatgacg tcac chr4:113249230-113249250 10 1.49e-04 AATATTAAG CAATGACT AAA chr5:118873629-118873649 3 2.12e-04 TG AAATGCCT GACAGAGATT chr14:65943545-65943565 4 2.12e-04 CAG AAATGGCT CTGGTCTGA chr4:154343362-154343382 6 2.44e-04 TGACA AACTGACT TGAGCTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARATGACT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr14:74552680-74552700 5.3e-05 12_[+2] chr12:12799031-12799051 5.3e-05 12_[+2] chr18:60774553-60774573 5.3e-05 12_[+2] chr12:27651307-27651327 5.3e-05 4_[+2]_8 chr3:193583294-193583314 5.3e-05 [+2]_12 chr18:11325386-11325406 5.3e-05 [+2]_12 chr14:21732439-21732459 5.3e-05 12_[+2] chr12:65054521-65054541 8.5e-05 12_[+2] chr5:123919624-123919644 8.5e-05 10_[+2]_2 chr2:64927450-64927470 8.5e-05 10_[+2]_2 chr6:27832930-27832950 0.00012 8_[+2]_4 chr18:43830634-43830654 0.00012 8_[+2]_4 chr4:113249230-113249250 0.00015 9_[+2]_3 chr5:118873629-118873649 0.00021 2_[+2]_10 chr14:65943545-65943565 0.00021 3_[+2]_9 chr4:154343362-154343382 0.00024 5_[+2]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARATGACT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ARATGACT width=8 seqs=16 chr14:74552680-74552700 ( 13) AGATGACT 1 chr12:12799031-12799051 ( 13) AAATGACT 1 chr18:60774553-60774573 ( 13) AAATGACT 1 chr12:27651307-27651327 ( 5) AGATGACT 1 chr3:193583294-193583314 ( 1) AAATGACT 1 chr18:11325386-11325406 ( 1) AAATGACT 1 chr14:21732439-21732459 ( 13) AGATGACT 1 chr12:65054521-65054541 ( 13) GGATGACT 1 chr5:123919624-123919644 ( 11) GAATGACT 1 chr2:64927450-64927470 ( 11) GAATGACT 1 chr6:27832930-27832950 ( 9) AGATGACG 1 chr18:43830634-43830654 ( 9) AGATGACG 1 chr4:113249230-113249250 ( 10) CAATGACT 1 chr5:118873629-118873649 ( 3) AAATGCCT 1 chr14:65943545-65943565 ( 4) AAATGGCT 1 chr4:154343362-154343382 ( 6) AACTGACT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARATGACT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.39892 E= 1.7e-001 125 -158 -1 -1064 99 -1064 99 -1064 158 -158 -1064 -1064 -1064 -1064 -1064 169 -1064 -1064 240 -1064 148 -158 -160 -1064 -1064 241 -1064 -1064 -1064 -1064 -60 150 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARATGACT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 1.7e-001 0.750000 0.062500 0.187500 0.000000 0.625000 0.000000 0.375000 0.000000 0.937500 0.062500 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.875000 0.062500 0.062500 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.125000 0.875000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARATGACT MEME-2 regular expression -------------------------------------------------------------------------------- A[AG]ATGACT -------------------------------------------------------------------------------- Time 2.68 secs. ******************************************************************************** ******************************************************************************** MOTIF TCTCTCTG MEME-3 width = 8 sites = 4 llr = 43 E-value = 4.0e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTCTCTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::::3: pos.-specific C :a:a:a:: probability G :::::::a matrix T a:a:a:8: bits 2.4 * * * * 2.2 * * * * 1.9 * * * * 1.7 ****** * Relative 1.4 ****** * Entropy 1.2 ****** * (15.6 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TCTCTCTG consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr5:89226737-89226757 2 1.14e-05 A TCTCTCTG CTGTAAAATA chr8:84860682-84860702 13 1.14e-05 AAACTTCTCA TCTCTCTG chr14:68147020-68147040 9 1.14e-05 GCTCTGTA TCTCTCTG GAAA chr11:84000556-84000576 4 2.31e-05 CAC TCTCTCAG TATGAGTAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:89226737-89226757 1.1e-05 1_[+3]_11 chr8:84860682-84860702 1.1e-05 12_[+3] chr14:68147020-68147040 1.1e-05 8_[+3]_4 chr11:84000556-84000576 2.3e-05 3_[+3]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTCTCTG width=8 seqs=4 chr5:89226737-89226757 ( 2) TCTCTCTG 1 chr8:84860682-84860702 ( 13) TCTCTCTG 1 chr14:68147020-68147040 ( 9) TCTCTCTG 1 chr11:84000556-84000576 ( 4) TCTCTCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.66445 E= 4.0e+002 -865 -865 -865 169 -865 241 -865 -865 -865 -865 -865 169 -865 241 -865 -865 -865 -865 -865 169 -865 241 -865 -865 -33 -865 -865 128 -865 -865 240 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 4.0e+002 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.000000 0.000000 0.750000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCTG MEME-3 regular expression -------------------------------------------------------------------------------- TCTCTC[TA]G -------------------------------------------------------------------------------- Time 4.36 secs. ******************************************************************************** ******************************************************************************** MOTIF BTCATTWY MEME-4 width = 8 sites = 17 llr = 128 E-value = 1.2e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif BTCATTWY MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::a::4: pos.-specific C 3:a::::5 probability G 22:::::: matrix T 58::aa65 bits 2.4 * 2.2 * 1.9 * 1.7 **** Relative 1.4 **** Entropy 1.2 **** (10.9 bits) 1.0 ***** * 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTCATTTT consensus CG AC sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTCATTWY MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr9:115141688-115141708 5 1.90e-05 TGAT CTCATTTC AACACTCA chr9:94158316-94158336 3 1.90e-05 GA CTCATTTC AGGAATTCCT chr12:104856868-10485688 4 6.94e-05 ACA GTCATTTC AAAACAGGA chr21:43889586-43889606 10 1.01e-04 cttctaaca ctcatttt gct chr4:103456719-103456739 3 1.01e-04 GA CTCATTTT AAGCAAATGG chr6:73393682-73393702 5 1.52e-04 tatc ttcatttt agtaataa chr14:22933487-22933507 12 1.52e-04 CTGTTATCCT TTCATTTT G chr12:123205934-12320595 5 2.46e-04 CCTC CGCATTTC GTAGAAAC chr1:227102973-227102993 4 2.46e-04 ACT TTCATTAC TTTTATGAC chr2:58262664-58262684 7 2.65e-04 AACATT TGCATTTC ATAGTT chr18:13019449-13019469 8 2.85e-04 GTGTCCA GTCATTAC ATGAA chr20:24819968-24819988 8 3.28e-04 AGCCAAT GGCATTTC CGTTT chr11:128835567-12883558 9 4.00e-04 CTTTTGCT TTCATTAT TACT chr14:76139906-76139926 12 4.00e-04 cttaaccagt ttcattat t chr11:121078396-12107841 5 4.00e-04 ggtt ttcattat gactggat chr19:36202368-36202388 8 4.31e-04 TCACATT TGCATTTT CCCTT chr20:52621078-52621098 3 4.63e-04 GA GTCATTAT GAAAGTGGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTCATTWY MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:115141688-115141708 1.9e-05 4_[+4]_8 chr9:94158316-94158336 1.9e-05 2_[+4]_10 chr12:104856868-10485688 6.9e-05 3_[+4]_9 chr21:43889586-43889606 0.0001 9_[+4]_3 chr4:103456719-103456739 0.0001 2_[+4]_10 chr6:73393682-73393702 0.00015 4_[+4]_8 chr14:22933487-22933507 0.00015 11_[+4]_1 chr12:123205934-12320595 0.00025 4_[+4]_8 chr1:227102973-227102993 0.00025 3_[+4]_9 chr2:58262664-58262684 0.00027 6_[+4]_6 chr18:13019449-13019469 0.00028 7_[+4]_5 chr20:24819968-24819988 0.00033 7_[+4]_5 chr11:128835567-12883558 0.0004 8_[+4]_4 chr14:76139906-76139926 0.0004 11_[+4]_1 chr11:121078396-12107841 0.0004 4_[+4]_8 chr19:36202368-36202388 0.00043 7_[+4]_5 chr20:52621078-52621098 0.00046 2_[+4]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTCATTWY MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF BTCATTWY width=8 seqs=17 chr9:115141688-115141708 ( 5) CTCATTTC 1 chr9:94158316-94158336 ( 3) CTCATTTC 1 chr12:104856868-10485688 ( 4) GTCATTTC 1 chr21:43889586-43889606 ( 10) CTCATTTT 1 chr4:103456719-103456739 ( 3) CTCATTTT 1 chr6:73393682-73393702 ( 5) TTCATTTT 1 chr14:22933487-22933507 ( 12) TTCATTTT 1 chr12:123205934-12320595 ( 5) CGCATTTC 1 chr1:227102973-227102993 ( 4) TTCATTAC 1 chr2:58262664-58262684 ( 7) TGCATTTC 1 chr18:13019449-13019469 ( 8) GTCATTAC 1 chr20:24819968-24819988 ( 8) GGCATTTC 1 chr11:128835567-12883558 ( 9) TTCATTAT 1 chr14:76139906-76139926 ( 12) TTCATTAT 1 chr11:121078396-12107841 ( 5) TTCATTAT 1 chr19:36202368-36202388 ( 8) TGCATTTT 1 chr20:52621078-52621098 ( 3) GTCATTAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTCATTWY MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.94083 E= 1.2e+004 -1073 65 31 61 -1073 -1073 31 131 -1073 241 -1073 -1073 167 -1073 -1073 -1073 -1073 -1073 -1073 169 -1073 -1073 -1073 169 17 -1073 -1073 107 -1073 133 -1073 78 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTCATTWY MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 1.2e+004 0.000000 0.294118 0.235294 0.470588 0.000000 0.000000 0.235294 0.764706 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.352941 0.000000 0.000000 0.647059 0.000000 0.470588 0.000000 0.529412 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTCATTWY MEME-4 regular expression -------------------------------------------------------------------------------- [TCG][TG]CATT[TA][TC] -------------------------------------------------------------------------------- Time 5.10 secs. ******************************************************************************** ******************************************************************************** MOTIF YCCTTCCC MEME-5 width = 8 sites = 2 llr = 23 E-value = 2.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif YCCTTCCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 5aa::aaa probability G :::::::: matrix T 5::aa::: bits 2.4 ** *** 2.2 ** *** 1.9 ** *** 1.7 ******* Relative 1.4 ******* Entropy 1.2 ******* (16.5 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCCTTCCC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCCTTCCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr20:17519349-17519369 9 4.22e-06 AAAAGCAG CCCTTCCC ATGA chr15:64736729-64736749 4 1.11e-05 TCT TCCTTCCC TTTAGCTAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCCTTCCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr20:17519349-17519369 4.2e-06 8_[+5]_4 chr15:64736729-64736749 1.1e-05 3_[+5]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCCTTCCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YCCTTCCC width=8 seqs=2 chr20:17519349-17519369 ( 9) CCCTTCCC 1 chr15:64736729-64736749 ( 4) TCCTTCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCCTTCCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.6653 E= 2.4e+003 -765 141 -765 69 -765 241 -765 -765 -765 241 -765 -765 -765 -765 -765 169 -765 -765 -765 169 -765 241 -765 -765 -765 241 -765 -765 -765 241 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCCTTCCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.4e+003 0.000000 0.500000 0.000000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCCTTCCC MEME-5 regular expression -------------------------------------------------------------------------------- [CT]CCTTCCC -------------------------------------------------------------------------------- Time 6.60 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:22147687-22147707 3.46e-05 1_[+1(3.90e-05)]_11 chr14:105492614-10549263 1.53e-04 6_[+1(3.90e-05)]_6 chr9:94158316-94158336 1.77e-03 2_[+4(1.90e-05)]_10 chr11:100796826-10079684 1.09e-02 10_[+1(3.90e-05)]_2 chr18:3250880-3250900 8.76e-01 20 chr14:21732439-21732459 5.85e-02 12_[+2(5.28e-05)] chr11:111203102-11120312 9.14e-01 20 chr14:65943545-65943565 3.21e-03 20 chr2:120331901-120331921 8.58e-01 20 chr4:154343362-154343382 3.40e-02 20 chr9:74473923-74473943 1.13e-03 3_[+1(3.90e-05)]_9 chr3:46401695-46401715 8.30e-01 20 chr11:34655790-34655810 3.09e-01 20 chr15:101728868-10172888 4.31e-03 10_[+1(3.90e-05)]_2 chr6:16855386-16855406 5.30e-01 20 chr9:5480151-5480171 1.19e-02 [+1(3.90e-05)]_12 chr18:29733226-29733246 6.00e-01 20 chr8:143449683-143449703 9.86e-01 20 chr11:75619886-75619906 6.38e-04 3_[+1(3.90e-05)]_9 chr20:52621078-52621098 8.12e-02 20 chr2:207226296-207226316 3.98e-01 20 chr10:131938887-13193890 3.70e-01 20 chr4:185339255-185339275 2.46e-02 10_[+1(3.90e-05)]_2 chr9:93550513-93550533 2.06e-01 20 chr4:42462195-42462215 3.68e-03 10_[+1(3.90e-05)]_2 chr4:101942307-101942327 8.54e-07 8_[+1(3.90e-05)]_4 chr4:87878546-87878566 1.72e-01 20 chrX:71361611-71361631 2.54e-01 20 chr4:113249230-113249250 1.89e-02 20 chr20:20469923-20469943 3.86e-02 20 chr2:20565363-20565383 1.60e-01 20 chr5:130731845-130731865 9.73e-03 20 chr11:74814687-74814707 1.22e-03 8_[+1(6.28e-05)]_4 chr8:59555048-59555068 5.20e-01 20 chr15:57445659-57445679 9.79e-01 20 chr1:7278523-7278543 9.47e-01 20 chr11:83295224-83295244 1.89e-03 7_[+1(8.65e-05)]_5 chr11:4721122-4721142 7.28e-01 20 chr2:11667348-11667368 8.79e-01 20 chr6:24743629-24743649 9.99e-01 20 chr14:68147020-68147040 1.31e-02 8_[+3(1.14e-05)]_4 chr9:20570906-20570926 5.64e-01 20 chr1:170209748-170209768 9.63e-01 20 chr17:35749396-35749416 2.21e-02 20 chr1:79507978-79507998 9.97e-01 20 chr2:74811347-74811367 1.90e-01 20 chr6:163422578-163422598 2.03e-01 20 chr3:47507889-47507909 1.52e-03 1_[+1(3.90e-05)]_11 chr17:63023659-63023679 7.48e-01 20 chr13:24325574-24325594 2.33e-01 20 chr16:84785746-84785766 2.63e-01 20 chr2:20716879-20716899 1.04e-06 11_[+4(1.90e-05)]_1 chr6:154619613-154619633 8.59e-01 20 chr15:64736729-64736749 5.14e-03 3_[+5(1.11e-05)]_9 chr2:204736411-204736431 7.67e-01 20 chr6:252143-252163 9.55e-01 20 chr4:160028890-160028910 6.09e-01 20 chr2:58262664-58262684 1.18e-01 20 chr2:161080787-161080807 7.29e-01 20 chr11:117869058-11786907 1.54e-02 9_[+1(3.90e-05)]_3 chr13:31742516-31742536 2.05e-05 8_[+1(3.90e-05)]_4 chr15:37123791-37123811 6.64e-01 20 chr19:2962198-2962218 7.21e-01 20 chr7:50516676-50516696 5.07e-01 20 chr7:47592390-47592410 7.85e-03 12_[+1(6.28e-05)] chr2:64341393-64341413 9.36e-01 20 chr10:101934643-10193466 4.24e-01 20 chr15:81344567-81344587 1.61e-02 6_[+1(8.65e-05)]_6 chr20:24819968-24819988 1.28e-02 20 chr8:84860682-84860702 2.97e-04 12_[+3(1.14e-05)] chr11:60296147-60296167 1.22e-01 20 chr2:101889069-101889089 3.08e-01 20 chr9:94121512-94121532 5.43e-01 20 chr5:43245064-43245084 4.06e-02 [+1(3.90e-05)]_12 chr18:11325386-11325406 1.72e-04 [+2(5.28e-05)]_3_[+1(3.90e-05)]_1 chr18:13019449-13019469 5.85e-02 20 chr15:56532802-56532822 9.43e-01 20 chr17:46588582-46588602 1.00e+00 20 chr11:121078396-12107841 2.50e-02 20 chr12:118473535-11847355 7.61e-01 20 chr11:102239378-10223939 5.59e-01 20 chr3:108012872-108012892 8.24e-05 1_[+2(8.46e-05)]_11 chr3:194614553-194614573 3.32e-01 20 chr7:156711549-156711569 9.87e-01 20 chr6:133071993-133072013 5.56e-01 20 chr2:33709458-33709478 3.27e-01 20 chr2:96205671-96205691 9.74e-01 20 chr2:98528032-98528052 8.09e-01 20 chr3:177032892-177032912 3.11e-01 20 chr12:12377374-12377394 1.59e-04 8_[+4(1.90e-05)]_4 chr11:87913319-87913339 2.89e-02 5_[+1(3.90e-05)]_7 chr6:155095139-155095159 1.41e-01 20 chr10:17697726-17697746 9.45e-01 20 chr7:117421018-117421038 6.53e-01 20 chr3:61167756-61167776 4.97e-01 20 chr14:76139906-76139926 1.33e-01 20 chr1:23440596-23440616 7.06e-04 20 chr19:11205897-11205917 4.12e-01 20 chr18:43830634-43830654 1.11e-01 20 chr9:111873178-111873198 1.95e-02 6_[+1(6.28e-05)]_6 chr17:25566258-25566278 3.17e-01 20 chr11:128835567-12883558 8.11e-02 20 chr14:22933487-22933507 1.82e-02 20 chr8:79607190-79607210 7.06e-01 20 chr2:85165807-85165827 9.97e-01 20 chr14:73757174-73757194 9.17e-01 20 chr3:144014189-144014209 3.33e-01 20 chr10:12064809-12064829 2.80e-02 20 chr2:7898424-7898444 3.93e-02 20 chr11:10548960-10548980 1.17e-01 20 chr11:9484840-9484860 5.73e-01 20 chr2:145006703-145006723 9.37e-01 20 chr11:36376076-36376096 1.35e-01 20 chr1:172366606-172366626 4.19e-03 8_[+1(3.90e-05)]_4 chr4:14159048-14159068 2.08e-01 20 chr7:98393957-98393977 7.61e-03 20 chr4:53508272-53508292 1.48e-04 7_[+1(6.28e-05)]_5 chr1:161714057-161714077 2.77e-04 5_[+1(3.90e-05)]_7 chr10:98085941-98085961 8.21e-01 20 chr12:50641021-50641041 5.42e-04 9_[+1(8.65e-05)]_3 chr2:64927450-64927470 4.62e-02 10_[+2(8.46e-05)]_2 chr1:159091916-159091936 5.70e-01 20 chr13:102279462-10227948 8.13e-01 20 chr4:113120863-113120883 3.85e-01 20 chr4:56484153-56484173 4.50e-01 20 chr9:115141688-115141708 1.28e-02 4_[+4(1.90e-05)]_8 chr2:101923420-101923440 4.58e-01 20 chr4:146950489-146950509 9.39e-01 20 chr3:193583294-193583314 4.32e-04 [+2(5.28e-05)]_12 chr5:123919624-123919644 9.96e-02 10_[+2(8.46e-05)]_2 chr3:31796314-31796334 1.04e-03 20 chr19:36202368-36202388 4.02e-02 20 chr12:29317898-29317918 7.99e-05 6_[+1(3.90e-05)]_6 chr2:32415060-32415080 4.28e-01 20 chr10:17274508-17274528 8.59e-01 20 chr9:125227222-125227242 6.42e-01 20 chr5:67366670-67366690 5.59e-03 20 chr12:99775983-99776003 5.79e-03 2_[+1(3.90e-05)]_10 chr11:132227825-13222784 1.03e-02 7_[+1(8.65e-05)]_5 chr2:182857700-182857720 8.57e-01 20 chr2:53979079-53979099 9.93e-02 20 chr2:6966760-6966780 9.61e-01 20 chr5:167676232-167676252 3.00e-01 20 chr4:103456719-103456739 9.00e-02 20 chr11:123323767-12332378 2.86e-01 20 chr5:60122689-60122709 7.67e-01 20 chr9:1536674-1536694 8.14e-04 2_[+1(8.65e-05)]_10 chr12:109088635-10908865 5.42e-03 20 chr2:178071975-178071995 2.31e-01 20 chr5:67940903-67940923 1.97e-01 20 chr11:84000556-84000576 6.25e-04 3_[+3(2.31e-05)]_9 chr4:145095749-145095769 4.09e-02 20 chr4:105887925-105887945 1.06e-01 20 chr2:223678320-223678340 9.73e-01 20 chr5:89226737-89226757 1.37e-02 1_[+3(1.14e-05)]_11 chr15:59661988-59662008 4.92e-03 11_[+1(8.65e-05)]_1 chr12:123013773-12301379 9.74e-01 20 chr10:98348935-98348955 4.65e-01 20 chr12:92528814-92528834 1.13e-03 11_[+1(6.28e-05)]_1 chr11:18637806-18637826 4.14e-01 20 chr1:234867311-234867331 5.67e-01 20 chr1:1760052-1760072 9.50e-01 20 chr5:123863487-123863507 5.91e-01 20 chr12:27651307-27651327 2.90e-03 4_[+2(5.28e-05)]_8 chr1:161676451-161676471 4.86e-01 20 chr5:168003177-168003197 2.38e-04 4_[+1(3.90e-05)]_8 chr6:73393682-73393702 1.28e-02 20 chr18:2978363-2978383 1.06e-01 20 chr21:26563674-26563694 1.10e-02 20 chr6:56271196-56271216 3.25e-01 20 chr3:122252845-122252865 6.02e-01 20 chr11:33783169-33783189 1.05e-01 20 chr8:65543104-65543124 1.83e-01 20 chr12:96896510-96896530 2.54e-04 1_[+1(3.90e-05)]_11 chr18:60774553-60774573 6.71e-04 12_[+2(5.28e-05)] chr8:28725953-28725973 8.59e-01 20 chr6:42471857-42471877 8.54e-01 20 chr8:29538615-29538635 7.32e-02 20 chr7:28077029-28077049 8.66e-01 20 chr6:155545391-155545411 7.65e-01 20 chr14:63938167-63938187 4.69e-01 20 chr22:40256343-40256363 9.03e-03 20 chr21:36012731-36012751 3.82e-02 2_[+1(3.90e-05)]_10 chr20:17519349-17519369 9.89e-03 8_[+5(4.22e-06)]_4 chr3:112770240-112770260 5.33e-01 20 chr15:77377915-77377935 4.18e-01 20 chr15:71969259-71969279 1.69e-02 10_[+1(8.65e-05)]_2 chr5:5751773-5751793 8.48e-01 20 chr6:13764093-13764113 1.20e-02 20 chr6:161156813-161156833 5.85e-02 20 chr6:27832930-27832950 7.10e-02 20 chr1:117032108-117032128 8.13e-01 20 chr2:216896921-216896941 2.41e-02 4_[+1(3.90e-05)]_8 chr14:53615486-53615506 3.02e-01 20 chr3:23872561-23872581 8.98e-01 20 chr2:231406977-231406997 3.10e-05 5_[+4(1.90e-05)]_7 chr1:8156909-8156929 8.02e-01 20 chr2:13620343-13620363 8.48e-01 20 chr16:18957433-18957453 6.80e-03 4_[+1(6.28e-05)]_8 chr6:73450058-73450078 9.56e-01 20 chr18:60035504-60035524 7.20e-02 20 chrX:13094937-13094957 3.44e-03 [+1(6.28e-05)]_12 chr5:44886168-44886188 6.65e-02 20 chr1:227102973-227102993 4.55e-02 20 chr12:12799031-12799051 1.83e-02 12_[+2(5.28e-05)] chr2:157333498-157333518 4.89e-04 20 chr14:47238711-47238731 4.96e-01 20 chr2:33713921-33713941 1.35e-01 20 chr5:142418652-142418672 4.57e-02 20 chr5:52063798-52063818 7.54e-01 20 chr2:198080979-198080999 8.10e-01 20 chr6:45447735-45447755 4.02e-01 20 chr21:43889586-43889606 4.54e-03 20 chr11:48028394-48028414 7.69e-01 20 chr20:2759417-2759437 4.40e-04 9_[+1(8.65e-05)]_3 chr4:143942697-143942717 9.79e-01 20 chr3:29046844-29046864 9.12e-01 20 chr3:124295517-124295537 9.16e-01 20 chr11:83324651-83324671 8.57e-01 20 chr7:128648958-128648978 8.26e-01 20 chr1:202457490-202457510 7.54e-01 20 chr3:98699803-98699823 1.87e-01 20 chr8:131820812-131820832 3.14e-01 20 chr11:118319203-11831922 1.91e-01 20 chr12:123205934-12320595 6.09e-02 20 chr3:154115991-154116011 2.76e-01 20 chr13:99202382-99202402 7.14e-01 20 chr3:188027705-188027725 7.24e-01 20 chr20:34482002-34482022 2.78e-01 20 chr8:105187925-105187945 8.03e-01 20 chr12:25261110-25261130 7.51e-02 20 chr12:40511864-40511884 7.51e-01 20 chr14:74552680-74552700 4.69e-02 12_[+2(5.28e-05)] chr20:55130113-55130133 3.69e-04 1_[+1(3.90e-05)]_11 chr1:8664291-8664311 5.70e-01 20 chr3:159682333-159682353 8.51e-02 20 chr2:64965318-64965338 7.10e-02 20 chr5:118873629-118873649 8.59e-03 20 chr6:126231886-126231906 7.14e-02 [+1(8.65e-05)]_12 chr18:9117408-9117428 9.53e-01 20 chr12:104856868-10485688 6.72e-03 3_[+4(6.94e-05)]_9 chr14:63935185-63935205 4.72e-01 20 chr12:65054521-65054541 1.25e-03 12_[+2(8.46e-05)] chr2:28475401-28475421 5.09e-01 20 chr1:79659067-79659087 7.77e-01 20 chr7:44775182-44775202 9.99e-01 20 chr2:111858580-111858600 2.28e-03 7_[+1(3.90e-05)]_5 chr12:65550298-65550318 4.44e-02 20 chr5:88120172-88120192 6.94e-01 20 chr3:170966793-170966813 9.83e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n04.farnam.hpc.yale.internal ********************************************************************************