******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/JUNB.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr11:123986067-12398608 1.0000 20 chr3:119358567-119358587 1.0000 20 chr20:43324545-43324565 1.0000 20 chr10:104953170-10495319 1.0000 20 chr1:151689446-151689466 1.0000 20 chr17:64028644-64028664 1.0000 20 chr3:117986600-117986620 1.0000 20 chr22:30821681-30821701 1.0000 20 chr22:22231169-22231189 1.0000 20 chr14:92446640-92446660 1.0000 20 chr2:45977815-45977835 1.0000 20 chr2:134877382-134877402 1.0000 20 chr11:64794820-64794840 1.0000 20 chr1:68195756-68195776 1.0000 20 chr9:21810035-21810055 1.0000 20 chr16:87329073-87329093 1.0000 20 chr18:13019449-13019469 1.0000 20 chr16:69466128-69466148 1.0000 20 chr1:100774549-100774569 1.0000 20 chr12:109088662-10908868 1.0000 20 chr1:86481226-86481246 1.0000 20 chr3:143751582-143751602 1.0000 20 chr5:99202645-99202665 1.0000 20 chr17:76971156-76971176 1.0000 20 chr18:21826289-21826309 1.0000 20 chr8:139062127-139062147 1.0000 20 chr8:128216810-128216830 1.0000 20 chr3:101022104-101022124 1.0000 20 chr19:925547-925567 1.0000 20 chr17:53802955-53802975 1.0000 20 chr7:128648933-128648953 1.0000 20 chr21:33041476-33041496 1.0000 20 chr10:75255864-75255884 1.0000 20 chr7:136805650-136805670 1.0000 20 chr18:43593700-43593720 1.0000 20 chr3:177032900-177032920 1.0000 20 chr8:114616646-114616666 1.0000 20 chr3:69253599-69253619 1.0000 20 chr2:125633400-125633420 1.0000 20 chr10:110456985-11045700 1.0000 20 chr9:33836401-33836421 1.0000 20 chr20:22999298-22999318 1.0000 20 chr6:484224-484244 1.0000 20 chr8:10641394-10641414 1.0000 20 chr14:24583664-24583684 1.0000 20 chr2:45006100-45006120 1.0000 20 chr10:75240080-75240100 1.0000 20 chr7:114785720-114785740 1.0000 20 chr15:40401271-40401291 1.0000 20 chr11:132213513-13221353 1.0000 20 chr6:87798009-87798029 1.0000 20 chr13:62612540-62612560 1.0000 20 chr11:75619868-75619888 1.0000 20 chr5:76958660-76958680 1.0000 20 chr2:105931967-105931987 1.0000 20 chr3:108299130-108299150 1.0000 20 chr4:37243483-37243503 1.0000 20 chr1:199249533-199249553 1.0000 20 chr3:193583299-193583319 1.0000 20 chr10:65430559-65430579 1.0000 20 chr4:113120861-113120881 1.0000 20 chr2:44799815-44799835 1.0000 20 chr10:70459324-70459344 1.0000 20 chr10:121462373-12146239 1.0000 20 chr11:83954844-83954864 1.0000 20 chr7:89655296-89655316 1.0000 20 chr1:199277836-199277856 1.0000 20 chr2:98583554-98583574 1.0000 20 chr4:186359173-186359193 1.0000 20 chrX:13094913-13094933 1.0000 20 chr17:25566250-25566270 1.0000 20 chr1:243898944-243898964 1.0000 20 chr9:120445440-120445460 1.0000 20 chr12:103892980-10389300 1.0000 20 chr17:68133685-68133705 1.0000 20 chr14:76139921-76139941 1.0000 20 chr1:169359688-169359708 1.0000 20 chr15:60211737-60211757 1.0000 20 chr13:47167740-47167760 1.0000 20 chr10:101469678-10146969 1.0000 20 chr2:46727575-46727595 1.0000 20 chr19:56159346-56159366 1.0000 20 chr2:120863139-120863159 1.0000 20 chr3:113962028-113962048 1.0000 20 chr5:71778025-71778045 1.0000 20 chrX:32416111-32416131 1.0000 20 chr2:207226316-207226336 1.0000 20 chr7:5085284-5085304 1.0000 20 chr7:90893666-90893686 1.0000 20 chr15:80311897-80311917 1.0000 20 chr14:98635660-98635680 1.0000 20 chr8:65758745-65758765 1.0000 20 chr15:39988211-39988231 1.0000 20 chr7:133596683-133596703 1.0000 20 chr6:43538942-43538962 1.0000 20 chr9:128422528-128422548 1.0000 20 chr7:46098158-46098178 1.0000 20 chr22:43916788-43916808 1.0000 20 chr6:155095146-155095166 1.0000 20 chr11:60296120-60296140 1.0000 20 chr9:109935354-109935374 1.0000 20 chr5:143139827-143139847 1.0000 20 chr8:79607192-79607212 1.0000 20 chr1:233511556-233511576 1.0000 20 chr20:48330645-48330665 1.0000 20 chr1:21258962-21258982 1.0000 20 chr14:97878775-97878795 1.0000 20 chrX:24939075-24939095 1.0000 20 chr3:185829328-185829348 1.0000 20 chr4:80098708-80098728 1.0000 20 chrX:131089590-131089610 1.0000 20 chr3:17055267-17055287 1.0000 20 chr3:71442393-71442413 1.0000 20 chr10:98348960-98348980 1.0000 20 chr11:87913325-87913345 1.0000 20 chr16:27399178-27399198 1.0000 20 chr3:99202879-99202899 1.0000 20 chr2:7898435-7898455 1.0000 20 chr6:47476753-47476773 1.0000 20 chr5:139913452-139913472 1.0000 20 chr4:70865287-70865307 1.0000 20 chr13:97910595-97910615 1.0000 20 chr8:94815894-94815914 1.0000 20 chr7:106238712-106238732 1.0000 20 chr3:99591849-99591869 1.0000 20 chr8:83170328-83170348 1.0000 20 chr14:54122018-54122038 1.0000 20 chr1:113574077-113574097 1.0000 20 chr12:65054532-65054552 1.0000 20 chr10:90522844-90522864 1.0000 20 chr2:218280241-218280261 1.0000 20 chr12:108967280-10896730 1.0000 20 chr12:76232329-76232349 1.0000 20 chr7:124533379-124533399 1.0000 20 chr4:100939248-100939268 1.0000 20 chr6:135703394-135703414 1.0000 20 chr1:26909353-26909373 1.0000 20 chr14:70939154-70939174 1.0000 20 chr7:148144666-148144686 1.0000 20 chr4:123919018-123919038 1.0000 20 chr15:57079329-57079349 1.0000 20 chr8:64314667-64314687 1.0000 20 chr2:136422290-136422310 1.0000 20 chr6:16670940-16670960 1.0000 20 chr4:103456716-103456736 1.0000 20 chr2:141505392-141505412 1.0000 20 chr9:97658183-97658203 1.0000 20 chr5:72988043-72988063 1.0000 20 chr20:25615120-25615140 1.0000 20 chr11:76087888-76087908 1.0000 20 chr18:44647044-44647064 1.0000 20 chr3:121717309-121717329 1.0000 20 chr7:137580440-137580460 1.0000 20 chr3:122252864-122252884 1.0000 20 chr5:172117425-172117445 1.0000 20 chr20:47106769-47106789 1.0000 20 chr3:189923714-189923734 1.0000 20 chr12:80010119-80010139 1.0000 20 chr9:92714890-92714910 1.0000 20 chr2:109765894-109765914 1.0000 20 chr3:178138106-178138126 1.0000 20 chr2:208021768-208021788 1.0000 20 chr9:137750137-137750157 1.0000 20 chr18:20957827-20957847 1.0000 20 chr8:133834435-133834455 1.0000 20 chr6:15246121-15246141 1.0000 20 chr18:57620375-57620395 1.0000 20 chr12:13052611-13052631 1.0000 20 chr15:79965923-79965943 1.0000 20 chr8:52302742-52302762 1.0000 20 chr12:51867910-51867930 1.0000 20 chr7:6769206-6769226 1.0000 20 chr1:194765236-194765256 1.0000 20 chr3:127309546-127309566 1.0000 20 chr5:150831500-150831520 1.0000 20 chr16:18957447-18957467 1.0000 20 chr12:66426703-66426723 1.0000 20 chr15:57252485-57252505 1.0000 20 chr9:123980349-123980369 1.0000 20 chr10:126303053-12630307 1.0000 20 chr7:75226332-75226352 1.0000 20 chr5:114313849-114313869 1.0000 20 chr5:55067128-55067148 1.0000 20 chr18:60774530-60774550 1.0000 20 chr1:160424376-160424396 1.0000 20 chr7:28482371-28482391 1.0000 20 chr6:129770289-129770309 1.0000 20 chr7:24480636-24480656 1.0000 20 chr16:420651-420671 1.0000 20 chr5:78531149-78531169 1.0000 20 chr12:12799010-12799030 1.0000 20 chr15:83501483-83501503 1.0000 20 chr3:143620144-143620164 1.0000 20 chr15:43398248-43398268 1.0000 20 chr9:99241496-99241516 1.0000 20 chr11:84000544-84000564 1.0000 20 chr1:8156904-8156924 1.0000 20 chr1:234867285-234867305 1.0000 20 chr1:187955495-187955515 1.0000 20 chr11:83324649-83324669 1.0000 20 chr7:69309457-69309477 1.0000 20 chr1:79507949-79507969 1.0000 20 chr11:48028418-48028438 1.0000 20 chr20:3364920-3364940 1.0000 20 chr7:50516685-50516705 1.0000 20 chr13:45780641-45780661 1.0000 20 chr2:164482356-164482376 1.0000 20 chr5:95616073-95616093 1.0000 20 chr5:167676239-167676259 1.0000 20 chr1:29289129-29289149 1.0000 20 chr7:76895924-76895944 1.0000 20 chr17:57678719-57678739 1.0000 20 chr11:94005306-94005326 1.0000 20 chr7:7805231-7805251 1.0000 20 chr5:131289811-131289831 1.0000 20 chr19:39468648-39468668 1.0000 20 chr20:23625079-23625099 1.0000 20 chr3:114598306-114598326 1.0000 20 chr1:236439038-236439058 1.0000 20 chr1:201123750-201123770 1.0000 20 chr3:79317761-79317781 1.0000 20 chr9:77387233-77387253 1.0000 20 chr11:90434386-90434406 1.0000 20 chr4:113249231-113249251 1.0000 20 chr7:28077046-28077066 1.0000 20 chr5:75474901-75474921 1.0000 20 chr16:13535817-13535837 1.0000 20 chr21:36012727-36012747 1.0000 20 chr11:66659811-66659831 1.0000 20 chr15:67377796-67377816 1.0000 20 chr15:57445628-57445648 1.0000 20 chr2:203645614-203645634 1.0000 20 chr14:50988384-50988404 1.0000 20 chr2:64341357-64341377 1.0000 20 chr5:144436568-144436588 1.0000 20 chr10:27259764-27259784 1.0000 20 chr6:110423750-110423770 1.0000 20 chr6:68836426-68836446 1.0000 20 chr1:90593026-90593046 1.0000 20 chr2:216910054-216910074 1.0000 20 chr3:150502322-150502342 1.0000 20 chr8:96765192-96765212 1.0000 20 chr3:170966798-170966818 1.0000 20 chr14:31323922-31323942 1.0000 20 chr17:57829588-57829608 1.0000 20 chr12:919991-920011 1.0000 20 chr13:24368885-24368905 1.0000 20 chr5:130731832-130731852 1.0000 20 chr2:8446979-8446999 1.0000 20 chr6:42307884-42307904 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_JUNB/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/JUNB.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.305 C 0.188 G 0.203 T 0.304 Background letter frequencies (from file dataset with add-one prior applied): A 0.305 C 0.188 G 0.203 T 0.304 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF ATGASTCA MEME-1 width = 8 sites = 61 llr = 421 E-value = 2.4e-037 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATGASTCA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 5::a::29 pos.-specific C 2:::418: probability G 1:9:5::: matrix T 2a:::9:1 bits 2.4 2.2 1.9 1.7 *** Relative 1.4 *** * Entropy 1.2 *** *** (10.0 bits) 1.0 ******* 0.7 ******* 0.5 ******* 0.2 ******** 0.0 -------- Multilevel ATGAGTCA consensus T C sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGASTCA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:64341357-64341377 11 3.91e-05 TTTCAAAAGG ATGACTCA AA chr14:50988384-50988404 11 3.91e-05 GGGGGCCAGT ATGACTCA CT chr7:28077046-28077066 1 3.91e-05 . ATGACTCA TGTAAAACAT chr11:84000544-84000564 7 3.91e-05 TGAGAC ATGACTCA CTCTCT chr15:83501483-83501503 7 3.91e-05 CATAGA ATGAGTCA TCACTG chr5:55067128-55067148 4 3.91e-05 cta atgactca ttaccccca chr12:66426703-66426723 1 3.91e-05 . ATGagtca aaagaagaaa chr4:103456716-103456736 2 3.91e-05 G ATGACTCA TTTTAAGCAA chr2:7898435-7898455 11 3.91e-05 AGATTCTTAA ATGACTCA GA chr3:71442393-71442413 1 3.91e-05 . ATGACTCA TATTCATGAC chr15:60211737-60211757 5 3.91e-05 cctc atgagtca gaaaaggc chr12:109088662-10908868 9 3.91e-05 CTAACATT ATGAGTCA CGTA chr21:36012727-36012747 6 6.32e-05 agttg ctgagtca taggata chr17:68133685-68133705 8 6.32e-05 CAAAGCC CTGACTCA ATTCT chr10:75240080-75240100 1 6.32e-05 . ctgagtca cctaacacac chr8:114616646-114616666 13 6.32e-05 AACAAGAAAG CTGAGTCA chr5:150831500-150831520 8 1.02e-04 ctttgat ttgactca tcctg chr1:194765236-194765256 2 1.02e-04 T TTGAGTCA GTTTCTTTTA chr18:20957827-20957847 1 1.02e-04 . TTGAGTCA CTTCAGCAAA chr9:137750137-137750157 8 1.02e-04 tcagttc ttgactca aatgt chr7:124533379-124533399 6 1.02e-04 AGGTT TTGAGTCA TAAATGG chr2:98583554-98583574 13 1.02e-04 GAGTATTGTT TTGACTCA chr4:37243483-37243503 13 1.02e-04 agtcttggtt ttgagtca chr7:136805650-136805670 5 1.02e-04 tctt ttgagtca caattctc chr7:28482371-28482391 12 1.28e-04 CTGTAATGTT GTGACTCA A chr10:110456985-11045700 4 1.28e-04 TGA GTGAGTCA AATCTTCTG chr2:125633400-125633420 12 1.28e-04 AGAATCTAGT GTGACTCA T chr1:100774549-100774569 13 1.28e-04 AATGGGGGAA GTGAGTCA chr13:45780641-45780661 3 1.52e-04 TC ATGAGCCA GGGAATTTCC chr1:234867285-234867305 1 1.52e-04 . ATGACCCA GGCCCACGGC chr4:113249231-113249251 11 2.70e-04 ATATTAAGCA ATGACTAA AA chr9:123980349-123980369 11 2.70e-04 CAGTTTAGCT ATGACTAA GC chr2:141505392-141505412 3 2.70e-04 AA ATGAGTAA CTCTGAAAGT chr7:148144666-148144686 4 2.70e-04 TAA CTGAGCCA TAACAGAGC chr8:94815894-94815914 10 2.70e-04 TTATGCTCT ATGAGTAA TGT chr11:48028418-48028438 8 3.33e-04 TCTTGTT CTGACTCT ATTTT chr8:133834435-133834455 9 3.33e-04 ATCTCGAA CTGACTCT CTGG chr5:172117425-172117445 5 3.33e-04 tttg ctgagtaa aCCAGAAA chr5:114313849-114313869 2 3.88e-04 t atgattca gcaatcccac chr3:189923714-189923734 11 3.88e-04 ttttggttct atgattca gc chr5:72988043-72988063 5 4.90e-04 GAAT TTGACTAA TCCGTGGA chr8:64314667-64314687 8 4.90e-04 GGAGTAT TTGACTCT CGGCT chr3:99202879-99202899 7 4.90e-04 CTGGAA TTGACTCT AAAGGG chr3:119358567-119358587 5 4.90e-04 GATT TTGAGTAA GAGAGAAA chr10:126303053-12630307 7 5.26e-04 GAACAA ATCACTCA TAACTG chr1:243898944-243898964 3 5.26e-04 CT ATCAGTCA TCACCAGTCA chr3:117986600-117986620 3 5.26e-04 AA ATCAGTCA TCAACAATCA chr14:92446640-92446660 1 5.75e-04 . ATGAATCA TACTGCTTAC chr1:26909353-26909373 3 6.72e-04 TT ATAACTCA TGTTTATGAC chr10:101469678-10146969 6 7.22e-04 TAAAA CTGAATCA TTACTCA chr20:47106769-47106789 8 8.88e-04 TCCTGAA ATGAGGCA GAGGC chr3:178138106-178138126 4 9.82e-04 GAA ATGAGCAA TGCCAAGTG chr17:57829588-57829608 4 1.14e-03 taa atgagtga atgcggccg chr2:164482356-164482376 1 1.14e-03 . ATGACACA ATCAGTTTTG chr2:208021768-208021788 9 1.14e-03 GTCAAATC TTAAGTCA TAGT chr22:22231169-22231189 3 1.14e-03 AA TTAACTCA TTTTTCTGCA chr20:25615120-25615140 12 1.26e-03 TTAATACCAG CTGACCAA C chr7:90893666-90893686 6 1.26e-03 GGTCC CTGAGCCT CCAGTTC chr10:70459324-70459344 10 1.26e-03 TCAGTAATG GTGATTCA GTT chr20:23625079-23625099 2 1.42e-03 t ctgagtat tccatagttt chr12:76232329-76232349 10 1.42e-03 atctcactt ctgagtat tta -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGASTCA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:64341357-64341377 3.9e-05 10_[+1]_2 chr14:50988384-50988404 3.9e-05 10_[+1]_2 chr7:28077046-28077066 3.9e-05 [+1]_12 chr11:84000544-84000564 3.9e-05 6_[+1]_6 chr15:83501483-83501503 3.9e-05 6_[+1]_6 chr5:55067128-55067148 3.9e-05 3_[+1]_9 chr12:66426703-66426723 3.9e-05 [+1]_12 chr4:103456716-103456736 3.9e-05 1_[+1]_11 chr2:7898435-7898455 3.9e-05 10_[+1]_2 chr3:71442393-71442413 3.9e-05 [+1]_12 chr15:60211737-60211757 3.9e-05 4_[+1]_8 chr12:109088662-10908868 3.9e-05 8_[+1]_4 chr21:36012727-36012747 6.3e-05 5_[+1]_7 chr17:68133685-68133705 6.3e-05 7_[+1]_5 chr10:75240080-75240100 6.3e-05 [+1]_12 chr8:114616646-114616666 6.3e-05 12_[+1] chr5:150831500-150831520 0.0001 7_[+1]_5 chr1:194765236-194765256 0.0001 1_[+1]_11 chr18:20957827-20957847 0.0001 [+1]_12 chr9:137750137-137750157 0.0001 7_[+1]_5 chr7:124533379-124533399 0.0001 5_[+1]_7 chr2:98583554-98583574 0.0001 12_[+1] chr4:37243483-37243503 0.0001 12_[+1] chr7:136805650-136805670 0.0001 4_[+1]_8 chr7:28482371-28482391 0.00013 11_[+1]_1 chr10:110456985-11045700 0.00013 3_[+1]_9 chr2:125633400-125633420 0.00013 11_[+1]_1 chr1:100774549-100774569 0.00013 12_[+1] chr13:45780641-45780661 0.00015 2_[+1]_10 chr1:234867285-234867305 0.00015 [+1]_12 chr4:113249231-113249251 0.00027 10_[+1]_2 chr9:123980349-123980369 0.00027 10_[+1]_2 chr2:141505392-141505412 0.00027 2_[+1]_10 chr7:148144666-148144686 0.00027 3_[+1]_9 chr8:94815894-94815914 0.00027 9_[+1]_3 chr11:48028418-48028438 0.00033 7_[+1]_5 chr8:133834435-133834455 0.00033 8_[+1]_4 chr5:172117425-172117445 0.00033 4_[+1]_8 chr5:114313849-114313869 0.00039 1_[+1]_11 chr3:189923714-189923734 0.00039 10_[+1]_2 chr5:72988043-72988063 0.00049 4_[+1]_8 chr8:64314667-64314687 0.00049 7_[+1]_5 chr3:99202879-99202899 0.00049 6_[+1]_6 chr3:119358567-119358587 0.00049 4_[+1]_8 chr10:126303053-12630307 0.00053 6_[+1]_6 chr1:243898944-243898964 0.00053 2_[+1]_10 chr3:117986600-117986620 0.00053 2_[+1]_10 chr14:92446640-92446660 0.00058 [+1]_12 chr1:26909353-26909373 0.00067 2_[+1]_10 chr10:101469678-10146969 0.00072 5_[+1]_7 chr20:47106769-47106789 0.00089 7_[+1]_5 chr3:178138106-178138126 0.00098 3_[+1]_9 chr17:57829588-57829608 0.0011 3_[+1]_9 chr2:164482356-164482376 0.0011 [+1]_12 chr2:208021768-208021788 0.0011 8_[+1]_4 chr22:22231169-22231189 0.0011 2_[+1]_10 chr20:25615120-25615140 0.0013 11_[+1]_1 chr7:90893666-90893686 0.0013 5_[+1]_7 chr10:70459324-70459344 0.0013 9_[+1]_3 chr20:23625079-23625099 0.0014 1_[+1]_11 chr12:76232329-76232349 0.0014 9_[+1]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGASTCA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATGASTCA width=8 seqs=61 chr2:64341357-64341377 ( 11) ATGACTCA 1 chr14:50988384-50988404 ( 11) ATGACTCA 1 chr7:28077046-28077066 ( 1) ATGACTCA 1 chr11:84000544-84000564 ( 7) ATGACTCA 1 chr15:83501483-83501503 ( 7) ATGAGTCA 1 chr5:55067128-55067148 ( 4) ATGACTCA 1 chr12:66426703-66426723 ( 1) ATGAGTCA 1 chr4:103456716-103456736 ( 2) ATGACTCA 1 chr2:7898435-7898455 ( 11) ATGACTCA 1 chr3:71442393-71442413 ( 1) ATGACTCA 1 chr15:60211737-60211757 ( 5) ATGAGTCA 1 chr12:109088662-10908868 ( 9) ATGAGTCA 1 chr21:36012727-36012747 ( 6) CTGAGTCA 1 chr17:68133685-68133705 ( 8) CTGACTCA 1 chr10:75240080-75240100 ( 1) CTGAGTCA 1 chr8:114616646-114616666 ( 13) CTGAGTCA 1 chr5:150831500-150831520 ( 8) TTGACTCA 1 chr1:194765236-194765256 ( 2) TTGAGTCA 1 chr18:20957827-20957847 ( 1) TTGAGTCA 1 chr9:137750137-137750157 ( 8) TTGACTCA 1 chr7:124533379-124533399 ( 6) TTGAGTCA 1 chr2:98583554-98583574 ( 13) TTGACTCA 1 chr4:37243483-37243503 ( 13) TTGAGTCA 1 chr7:136805650-136805670 ( 5) TTGAGTCA 1 chr7:28482371-28482391 ( 12) GTGACTCA 1 chr10:110456985-11045700 ( 4) GTGAGTCA 1 chr2:125633400-125633420 ( 12) GTGACTCA 1 chr1:100774549-100774569 ( 13) GTGAGTCA 1 chr13:45780641-45780661 ( 3) ATGAGCCA 1 chr1:234867285-234867305 ( 1) ATGACCCA 1 chr4:113249231-113249251 ( 11) ATGACTAA 1 chr9:123980349-123980369 ( 11) ATGACTAA 1 chr2:141505392-141505412 ( 3) ATGAGTAA 1 chr7:148144666-148144686 ( 4) CTGAGCCA 1 chr8:94815894-94815914 ( 10) ATGAGTAA 1 chr11:48028418-48028438 ( 8) CTGACTCT 1 chr8:133834435-133834455 ( 9) CTGACTCT 1 chr5:172117425-172117445 ( 5) CTGAGTAA 1 chr5:114313849-114313869 ( 2) ATGATTCA 1 chr3:189923714-189923734 ( 11) ATGATTCA 1 chr5:72988043-72988063 ( 5) TTGACTAA 1 chr8:64314667-64314687 ( 8) TTGACTCT 1 chr3:99202879-99202899 ( 7) TTGACTCT 1 chr3:119358567-119358587 ( 5) TTGAGTAA 1 chr10:126303053-12630307 ( 7) ATCACTCA 1 chr1:243898944-243898964 ( 3) ATCAGTCA 1 chr3:117986600-117986620 ( 3) ATCAGTCA 1 chr14:92446640-92446660 ( 1) ATGAATCA 1 chr1:26909353-26909373 ( 3) ATAACTCA 1 chr10:101469678-10146969 ( 6) CTGAATCA 1 chr20:47106769-47106789 ( 8) ATGAGGCA 1 chr3:178138106-178138126 ( 4) ATGAGCAA 1 chr17:57829588-57829608 ( 4) ATGAGTGA 1 chr2:164482356-164482376 ( 1) ATGACACA 1 chr2:208021768-208021788 ( 9) TTAAGTCA 1 chr22:22231169-22231189 ( 3) TTAACTCA 1 chr20:25615120-25615140 ( 12) CTGACCAA 1 chr7:90893666-90893686 ( 6) CTGAGCCT 1 chr10:70459324-70459344 ( 10) GTGATTCA 1 chr20:23625079-23625099 ( 2) CTGAGTAT 1 chr12:76232329-76232349 ( 10) CTGAGTAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGASTCA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.44071 E= 2.4e-037 64 18 -131 -41 -1257 -1257 -1257 172 -263 -193 215 -1257 171 -1257 -1257 -1257 -322 124 123 -263 -421 -93 -363 151 -76 210 -363 -1257 154 -1257 -1257 -141 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGASTCA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 61 E= 2.4e-037 0.475410 0.213115 0.081967 0.229508 0.000000 0.000000 0.000000 1.000000 0.049180 0.049180 0.901639 0.000000 1.000000 0.000000 0.000000 0.000000 0.032787 0.442623 0.475410 0.049180 0.016393 0.098361 0.016393 0.868852 0.180328 0.803279 0.016393 0.000000 0.885246 0.000000 0.000000 0.114754 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGASTCA MEME-1 regular expression -------------------------------------------------------------------------------- [ATC]TGA[GC]TCA -------------------------------------------------------------------------------- Time 2.20 secs. ******************************************************************************** ******************************************************************************** MOTIF ABTGAAAG MEME-2 width = 8 sites = 11 llr = 96 E-value = 2.8e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif ABTGAAAG MEME-2 Description -------------------------------------------------------------------------------- Simplified A 71::aaa: pos.-specific C :2:::::: probability G :4:a:::a matrix T 34a::::: bits 2.4 * * 2.2 * * 1.9 * * 1.7 ****** Relative 1.4 ****** Entropy 1.2 ****** (12.6 bits) 1.0 * ****** 0.7 * ****** 0.5 * ****** 0.2 ******** 0.0 -------- Multilevel AGTGAAAG consensus TT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ABTGAAAG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:170966798-170966818 9 2.20e-05 AAAATGCA AGTGAAAG TAAC chr1:113574077-113574097 8 2.20e-05 GTGTCAT AGTGAAAG ACAGA chr10:98348960-98348980 10 2.20e-05 cttgctcat agtgaaag ctc chr8:139062127-139062147 8 2.20e-05 TATTCAG AGTGAAAG TGACA chr2:8446979-8446999 8 5.50e-05 GGTATGA ATTGAAAG TCAAC chr1:236439038-236439058 1 5.50e-05 . attgaaag gggctcatta chr7:50516685-50516705 9 7.53e-05 AATGAGAA ACTGAAAG AAAG chr1:8156904-8156924 4 1.30e-04 CAA TTTGAAAG CAGTTTATG chrX:32416111-32416131 10 1.30e-04 ATTAGTAAT TTTGAAAG AGC chr2:141505392-141505412 12 1.50e-04 AATGAGTAAC TCTGAAAG T chr8:52302742-52302762 2 1.84e-04 A AATGAAAG TAAATGTTGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ABTGAAAG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:170966798-170966818 2.2e-05 8_[+2]_4 chr1:113574077-113574097 2.2e-05 7_[+2]_5 chr10:98348960-98348980 2.2e-05 9_[+2]_3 chr8:139062127-139062147 2.2e-05 7_[+2]_5 chr2:8446979-8446999 5.5e-05 7_[+2]_5 chr1:236439038-236439058 5.5e-05 [+2]_12 chr7:50516685-50516705 7.5e-05 8_[+2]_4 chr1:8156904-8156924 0.00013 3_[+2]_9 chrX:32416111-32416131 0.00013 9_[+2]_3 chr2:141505392-141505412 0.00015 11_[+2]_1 chr8:52302742-52302762 0.00018 1_[+2]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ABTGAAAG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ABTGAAAG width=8 seqs=11 chr3:170966798-170966818 ( 9) AGTGAAAG 1 chr1:113574077-113574097 ( 8) AGTGAAAG 1 chr10:98348960-98348980 ( 10) AGTGAAAG 1 chr8:139062127-139062147 ( 8) AGTGAAAG 1 chr2:8446979-8446999 ( 8) ATTGAAAG 1 chr1:236439038-236439058 ( 1) ATTGAAAG 1 chr7:50516685-50516705 ( 9) ACTGAAAG 1 chr1:8156904-8156924 ( 4) TTTGAAAG 1 chrX:32416111-32416131 ( 10) TTTGAAAG 1 chr2:141505392-141505412 ( 12) TCTGAAAG 1 chr8:52302742-52302762 ( 2) AATGAAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ABTGAAAG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.55806 E= 2.8e+002 125 -1010 -1010 -16 -174 -5 84 26 -1010 -1010 -1010 172 -1010 -1010 230 -1010 171 -1010 -1010 -1010 171 -1010 -1010 -1010 171 -1010 -1010 -1010 -1010 -1010 230 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ABTGAAAG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 2.8e+002 0.727273 0.000000 0.000000 0.272727 0.090909 0.181818 0.363636 0.363636 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ABTGAAAG MEME-2 regular expression -------------------------------------------------------------------------------- [AT][GT]TGAAAG -------------------------------------------------------------------------------- Time 2.97 secs. ******************************************************************************** ******************************************************************************** MOTIF CCGGCCAG MEME-3 width = 8 sites = 2 llr = 25 E-value = 7.2e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCGGCCAG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::::a: pos.-specific C aa::aa:: probability G ::aa:::a matrix T :::::::: bits 2.4 ****** * 2.2 ****** * 1.9 ****** * 1.7 ******** Relative 1.4 ******** Entropy 1.2 ******** (18.3 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCGGCCAG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGCCAG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr15:43398248-43398268 7 3.19e-06 CGACCC CCGGCCAG AGGCAA chr19:925547-925567 12 3.19e-06 TCCGATGCCT CCGGCCAG C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGCCAG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:43398248-43398268 3.2e-06 6_[+3]_6 chr19:925547-925567 3.2e-06 11_[+3]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGCCAG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCGGCCAG width=8 seqs=2 chr15:43398248-43398268 ( 7) CCGGCCAG 1 chr19:925547-925567 ( 12) CCGGCCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGCCAG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.6653 E= 7.2e+002 -765 241 -765 -765 -765 241 -765 -765 -765 -765 230 -765 -765 -765 230 -765 -765 241 -765 -765 -765 241 -765 -765 171 -765 -765 -765 -765 -765 230 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGCCAG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 7.2e+002 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGCCAG MEME-3 regular expression -------------------------------------------------------------------------------- CCGGCCAG -------------------------------------------------------------------------------- Time 3.67 secs. ******************************************************************************** ******************************************************************************** MOTIF ATGAMTGT MEME-4 width = 8 sites = 6 llr = 60 E-value = 4.2e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATGAMTGT MEME-4 Description -------------------------------------------------------------------------------- Simplified A a::a3::: pos.-specific C ::::7::: probability G ::a:::a: matrix T :a:::a:a bits 2.4 * * 2.2 * * 1.9 * * 1.7 **** *** Relative 1.4 **** *** Entropy 1.2 ******** (14.4 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ATGACTGT consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGAMTGT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:108967280-10896730 8 2.02e-05 gcatgct atgactgt ACTTT chr12:65054532-65054552 4 2.02e-05 AGG ATGACTGT TGGTTTTGC chr7:114785720-114785740 1 2.02e-05 . atgactgt gctaatttca chr9:33836401-33836421 3 2.02e-05 at atgactgT aattcagtgg chr3:99591849-99591869 10 5.31e-05 ACTCAAAAC ATGAATGT CCT chr9:120445440-120445460 1 5.31e-05 . ATGAATGT GAAATCTTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGAMTGT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:108967280-10896730 2e-05 7_[+4]_5 chr12:65054532-65054552 2e-05 3_[+4]_9 chr7:114785720-114785740 2e-05 [+4]_12 chr9:33836401-33836421 2e-05 2_[+4]_10 chr3:99591849-99591869 5.3e-05 9_[+4]_3 chr9:120445440-120445460 5.3e-05 [+4]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGAMTGT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATGAMTGT width=8 seqs=6 chr12:108967280-10896730 ( 8) ATGACTGT 1 chr12:65054532-65054552 ( 4) ATGACTGT 1 chr7:114785720-114785740 ( 1) ATGACTGT 1 chr9:33836401-33836421 ( 3) ATGACTGT 1 chr3:99591849-99591869 ( 10) ATGAATGT 1 chr9:120445440-120445460 ( 1) ATGAATGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGAMTGT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.52677 E= 4.2e+002 171 -923 -923 -923 -923 -923 -923 172 -923 -923 230 -923 171 -923 -923 -923 13 183 -923 -923 -923 -923 -923 172 -923 -923 230 -923 -923 -923 -923 172 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGAMTGT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 4.2e+002 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.333333 0.666667 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGAMTGT MEME-4 regular expression -------------------------------------------------------------------------------- ATGA[CA]TGT -------------------------------------------------------------------------------- Time 5.97 secs. ******************************************************************************** ******************************************************************************** MOTIF CCGCGCTR MEME-5 width = 8 sites = 2 llr = 24 E-value = 3.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCGCGCTR MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::5 pos.-specific C aa:a:a:: probability G ::a:a::5 matrix T ::::::a: bits 2.4 ****** 2.2 ****** 1.9 ****** 1.7 ******* Relative 1.4 ******* Entropy 1.2 ******* (17.0 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCGCGCTA consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCGCTR MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr10:104953170-10495319 7 3.18e-06 CCCTGA CCGCGCTG CGTCTG chr20:48330645-48330665 13 7.95e-06 CCCAAGTGCT CCGCGCTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCGCTR MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:104953170-10495319 3.2e-06 6_[+5]_6 chr20:48330645-48330665 7.9e-06 12_[+5] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCGCTR MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCGCGCTR width=8 seqs=2 chr10:104953170-10495319 ( 7) CCGCGCTG 1 chr20:48330645-48330665 ( 13) CCGCGCTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCGCTR MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.6653 E= 3.2e+003 -765 241 -765 -765 -765 241 -765 -765 -765 -765 230 -765 -765 241 -765 -765 -765 -765 230 -765 -765 241 -765 -765 -765 -765 -765 171 71 -765 130 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCGCTR MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.2e+003 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.500000 0.000000 0.500000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCGCTR MEME-5 regular expression -------------------------------------------------------------------------------- CCGCGCT[AG] -------------------------------------------------------------------------------- Time 8.65 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:123986067-12398608 9.33e-01 20 chr3:119358567-119358587 1.05e-01 20 chr20:43324545-43324565 9.88e-01 20 chr10:104953170-10495319 1.42e-04 6_[+5(3.18e-06)]_6 chr1:151689446-151689466 8.70e-01 20 chr17:64028644-64028664 8.58e-01 20 chr3:117986600-117986620 2.48e-01 20 chr22:30821681-30821701 4.21e-01 20 chr22:22231169-22231189 4.52e-01 20 chr14:92446640-92446660 1.02e-01 20 chr2:45977815-45977835 6.52e-01 20 chr2:134877382-134877402 1.65e-01 20 chr11:64794820-64794840 7.62e-01 20 chr1:68195756-68195776 7.97e-01 20 chr9:21810035-21810055 1.72e-01 20 chr16:87329073-87329093 7.77e-01 20 chr18:13019449-13019469 5.07e-01 20 chr16:69466128-69466148 1.73e-01 20 chr1:100774549-100774569 7.05e-02 20 chr12:109088662-10908868 4.00e-02 8_[+1(3.91e-05)]_4 chr1:86481226-86481246 9.06e-01 20 chr3:143751582-143751602 5.59e-01 20 chr5:99202645-99202665 1.17e-01 20 chr17:76971156-76971176 1.77e-01 20 chr18:21826289-21826309 5.86e-01 20 chr8:139062127-139062147 6.29e-03 7_[+2(2.20e-05)]_5 chr8:128216810-128216830 6.93e-01 20 chr3:101022104-101022124 4.74e-01 20 chr19:925547-925567 1.52e-03 11_[+3(3.19e-06)]_1 chr17:53802955-53802975 9.44e-01 20 chr7:128648933-128648953 5.50e-01 20 chr21:33041476-33041496 7.62e-01 20 chr10:75255864-75255884 9.70e-01 20 chr7:136805650-136805670 1.21e-01 20 chr18:43593700-43593720 7.83e-01 20 chr3:177032900-177032920 5.32e-01 20 chr8:114616646-114616666 1.99e-02 12_[+1(6.32e-05)] chr3:69253599-69253619 4.53e-01 20 chr2:125633400-125633420 6.68e-02 20 chr10:110456985-11045700 6.35e-02 20 chr9:33836401-33836421 2.91e-03 2_[+4(2.02e-05)]_10 chr20:22999298-22999318 7.77e-01 20 chr6:484224-484244 8.86e-01 20 chr8:10641394-10641414 4.21e-01 20 chr14:24583664-24583684 2.19e-01 20 chr2:45006100-45006120 7.98e-01 20 chr10:75240080-75240100 5.96e-02 [+1(6.32e-05)]_12 chr7:114785720-114785740 7.24e-04 [+4(2.02e-05)]_12 chr15:40401271-40401291 4.73e-01 20 chr11:132213513-13221353 2.33e-01 20 chr6:87798009-87798029 5.33e-01 20 chr13:62612540-62612560 2.99e-01 20 chr11:75619868-75619888 9.17e-01 20 chr5:76958660-76958680 9.62e-01 20 chr2:105931967-105931987 9.69e-01 20 chr3:108299130-108299150 2.65e-02 20 chr4:37243483-37243503 1.34e-01 20 chr1:199249533-199249553 6.91e-01 20 chr3:193583299-193583319 6.17e-01 20 chr10:65430559-65430579 8.89e-01 20 chr4:113120861-113120881 3.39e-01 20 chr2:44799815-44799835 4.00e-01 20 chr10:70459324-70459344 2.58e-01 20 chr10:121462373-12146239 5.31e-01 20 chr11:83954844-83954864 2.40e-01 20 chr7:89655296-89655316 3.40e-01 20 chr1:199277836-199277856 4.30e-01 20 chr2:98583554-98583574 8.57e-02 20 chr4:186359173-186359193 9.76e-01 20 chrX:13094913-13094933 6.83e-01 20 chr17:25566250-25566270 8.71e-01 20 chr1:243898944-243898964 1.87e-01 20 chr9:120445440-120445460 3.77e-03 [+4(5.31e-05)]_12 chr12:103892980-10389300 3.28e-01 20 chr17:68133685-68133705 6.94e-03 7_[+1(6.32e-05)]_5 chr14:76139921-76139941 7.43e-01 20 chr1:169359688-169359708 6.62e-01 20 chr15:60211737-60211757 1.24e-02 4_[+1(3.91e-05)]_8 chr13:47167740-47167760 2.02e-01 20 chr10:101469678-10146969 1.05e-01 20 chr2:46727575-46727595 2.12e-01 20 chr19:56159346-56159366 2.64e-01 20 chr2:120863139-120863159 1.93e-01 20 chr3:113962028-113962048 4.88e-01 20 chr5:71778025-71778045 2.83e-01 20 chrX:32416111-32416131 6.20e-02 20 chr2:207226316-207226336 9.85e-01 20 chr7:5085284-5085304 7.95e-01 20 chr7:90893666-90893686 8.67e-02 20 chr15:80311897-80311917 7.76e-01 20 chr14:98635660-98635680 4.57e-01 20 chr8:65758745-65758765 1.88e-01 20 chr15:39988211-39988231 4.46e-01 20 chr7:133596683-133596703 9.75e-01 20 chr6:43538942-43538962 3.86e-01 20 chr9:128422528-128422548 3.19e-01 20 chr7:46098158-46098178 3.96e-01 20 chr22:43916788-43916808 9.63e-01 20 chr6:155095146-155095166 8.67e-02 20 chr11:60296120-60296140 5.30e-01 20 chr9:109935354-109935374 8.91e-01 20 chr5:143139827-143139847 6.08e-01 20 chr8:79607192-79607212 3.10e-02 20 chr1:233511556-233511576 9.59e-01 20 chr20:48330645-48330665 1.66e-02 12_[+5(7.95e-06)] chr1:21258962-21258982 4.23e-01 20 chr14:97878775-97878795 9.77e-01 20 chrX:24939075-24939095 6.15e-01 20 chr3:185829328-185829348 4.75e-01 20 chr4:80098708-80098728 5.73e-01 20 chrX:131089590-131089610 9.26e-01 20 chr3:17055267-17055287 2.84e-01 20 chr3:71442393-71442413 1.04e-02 [+1(3.91e-05)]_12 chr10:98348960-98348980 2.46e-02 9_[+2(2.20e-05)]_3 chr11:87913325-87913345 9.57e-01 20 chr16:27399178-27399198 4.15e-01 20 chr3:99202879-99202899 3.51e-02 20 chr2:7898435-7898455 9.08e-03 10_[+1(3.91e-05)]_2 chr6:47476753-47476773 9.35e-01 20 chr5:139913452-139913472 2.91e-01 20 chr4:70865287-70865307 3.04e-01 20 chr13:97910595-97910615 8.30e-01 20 chr8:94815894-94815914 3.70e-02 20 chr7:106238712-106238732 5.56e-01 20 chr3:99591849-99591869 1.46e-02 9_[+4(5.31e-05)]_3 chr8:83170328-83170348 2.56e-01 20 chr14:54122018-54122038 2.93e-01 20 chr1:113574077-113574097 8.14e-03 7_[+2(2.20e-05)]_5 chr12:65054532-65054552 6.47e-03 3_[+4(2.02e-05)]_9 chr10:90522844-90522864 4.15e-01 20 chr2:218280241-218280261 2.35e-01 20 chr12:108967280-10896730 1.13e-03 7_[+4(2.02e-05)]_5 chr12:76232329-76232349 1.90e-01 20 chr7:124533379-124533399 4.41e-02 20 chr4:100939248-100939268 3.43e-01 20 chr6:135703394-135703414 3.13e-01 20 chr1:26909353-26909373 2.37e-01 20 chr14:70939154-70939174 6.70e-01 20 chr7:148144666-148144686 2.98e-02 20 chr4:123919018-123919038 5.36e-01 20 chr15:57079329-57079349 8.22e-01 20 chr8:64314667-64314687 4.40e-02 20 chr2:136422290-136422310 2.18e-01 20 chr6:16670940-16670960 8.69e-01 20 chr4:103456716-103456736 5.14e-03 1_[+1(3.91e-05)]_11 chr2:141505392-141505412 6.26e-04 20 chr9:97658183-97658203 3.18e-01 20 chr5:72988043-72988063 1.72e-01 20 chr20:25615120-25615140 4.12e-02 20 chr11:76087888-76087908 4.10e-01 20 chr18:44647044-44647064 5.91e-01 20 chr3:121717309-121717329 2.58e-01 20 chr7:137580440-137580460 7.87e-01 20 chr3:122252864-122252884 3.93e-01 20 chr5:172117425-172117445 1.29e-01 20 chr20:47106769-47106789 1.11e-01 20 chr3:189923714-189923734 1.78e-01 20 chr12:80010119-80010139 1.14e-01 20 chr9:92714890-92714910 7.13e-01 20 chr2:109765894-109765914 7.11e-01 20 chr3:178138106-178138126 1.80e-01 20 chr2:208021768-208021788 1.78e-01 20 chr9:137750137-137750157 1.81e-02 20 chr18:20957827-20957847 5.13e-02 20 chr8:133834435-133834455 7.22e-03 20 chr6:15246121-15246141 5.87e-01 20 chr18:57620375-57620395 8.08e-01 20 chr12:13052611-13052631 5.60e-02 20 chr15:79965923-79965943 8.64e-01 20 chr8:52302742-52302762 8.97e-03 20 chr12:51867910-51867930 4.39e-01 20 chr7:6769206-6769226 8.64e-01 20 chr1:194765236-194765256 8.32e-02 20 chr3:127309546-127309566 8.27e-01 20 chr5:150831500-150831520 2.39e-02 20 chr16:18957447-18957467 8.99e-01 20 chr12:66426703-66426723 1.84e-02 [+1(3.91e-05)]_12 chr15:57252485-57252505 4.11e-01 20 chr9:123980349-123980369 3.17e-02 20 chr10:126303053-12630307 1.55e-01 20 chr7:75226332-75226352 1.49e-01 20 chr5:114313849-114313869 7.88e-02 20 chr5:55067128-55067148 1.50e-02 3_[+1(3.91e-05)]_9 chr18:60774530-60774550 7.54e-01 20 chr1:160424376-160424396 8.41e-01 20 chr7:28482371-28482391 2.84e-02 20 chr6:129770289-129770309 2.76e-01 20 chr7:24480636-24480656 1.80e-01 20 chr16:420651-420671 5.41e-01 20 chr5:78531149-78531169 6.84e-01 20 chr12:12799010-12799030 3.32e-01 20 chr15:83501483-83501503 2.50e-03 6_[+1(3.91e-05)]_6 chr3:143620144-143620164 2.50e-01 20 chr15:43398248-43398268 2.04e-03 6_[+3(3.19e-06)]_6 chr9:99241496-99241516 8.50e-01 20 chr11:84000544-84000564 6.52e-03 6_[+1(3.91e-05)]_6 chr1:8156904-8156924 1.22e-01 20 chr1:234867285-234867305 7.56e-03 20 chr1:187955495-187955515 4.52e-01 20 chr11:83324649-83324669 1.74e-01 20 chr7:69309457-69309477 8.50e-01 20 chr1:79507949-79507969 6.95e-01 20 chr11:48028418-48028438 4.78e-02 20 chr20:3364920-3364940 1.76e-02 20 chr7:50516685-50516705 1.05e-02 8_[+2(7.53e-05)]_4 chr13:45780641-45780661 2.47e-02 20 chr2:164482356-164482376 2.01e-01 20 chr5:95616073-95616093 1.09e-01 20 chr5:167676239-167676259 1.81e-01 20 chr1:29289129-29289149 7.11e-01 20 chr7:76895924-76895944 1.37e-01 20 chr17:57678719-57678739 4.67e-01 20 chr11:94005306-94005326 4.66e-01 20 chr7:7805231-7805251 6.76e-01 20 chr5:131289811-131289831 9.39e-01 20 chr19:39468648-39468668 9.59e-01 20 chr20:23625079-23625099 3.19e-01 20 chr3:114598306-114598326 5.04e-01 20 chr1:236439038-236439058 1.44e-02 [+2(5.50e-05)]_12 chr1:201123750-201123770 4.77e-01 20 chr3:79317761-79317781 3.28e-01 20 chr9:77387233-77387253 7.02e-01 20 chr11:90434386-90434406 1.81e-01 20 chr4:113249231-113249251 3.86e-02 20 chr7:28077046-28077066 8.44e-03 [+1(3.91e-05)]_12 chr5:75474901-75474921 6.31e-01 20 chr16:13535817-13535837 8.17e-01 20 chr21:36012727-36012747 2.53e-02 5_[+1(6.32e-05)]_7 chr11:66659811-66659831 7.94e-01 20 chr15:67377796-67377816 8.14e-01 20 chr15:57445628-57445648 5.79e-01 20 chr2:203645614-203645634 6.73e-01 20 chr14:50988384-50988404 8.10e-04 10_[+1(3.91e-05)]_2 chr2:64341357-64341377 8.50e-03 10_[+1(3.91e-05)]_2 chr5:144436568-144436588 7.82e-01 20 chr10:27259764-27259784 5.00e-02 20 chr6:110423750-110423770 7.42e-01 20 chr6:68836426-68836446 1.30e-01 20 chr1:90593026-90593046 7.64e-01 20 chr2:216910054-216910074 5.15e-01 20 chr3:150502322-150502342 2.03e-01 20 chr8:96765192-96765212 3.75e-01 20 chr3:170966798-170966818 7.00e-03 8_[+2(2.20e-05)]_4 chr14:31323922-31323942 1.27e-01 20 chr17:57829588-57829608 3.61e-03 20 chr12:919991-920011 6.03e-01 20 chr13:24368885-24368905 9.14e-02 20 chr5:130731832-130731852 5.27e-01 20 chr2:8446979-8446999 1.73e-02 7_[+2(5.50e-05)]_5 chr6:42307884-42307904 4.65e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n09.farnam.hpc.yale.internal ********************************************************************************