******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/IRF5.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr10:34994668-34994688 1.0000 20 chr8:26306652-26306672 1.0000 20 chr3:61340478-61340498 1.0000 20 chr14:89290841-89290861 1.0000 20 chr3:15139550-15139570 1.0000 20 chr13:113527566-11352758 1.0000 20 chr17:40610986-40611006 1.0000 20 chr14:107253164-10725318 1.0000 20 chr15:32907536-32907556 1.0000 20 chr5:126094470-126094490 1.0000 20 chr12:76424398-76424418 1.0000 20 chr9:140354404-140354424 1.0000 20 chr8:28705007-28705027 1.0000 20 chr8:74206504-74206524 1.0000 20 chr5:133512874-133512894 1.0000 20 chr16:71918456-71918476 1.0000 20 chr6:31794929-31794949 1.0000 20 chr1:142817164-142817184 1.0000 20 chr17:71228667-71228687 1.0000 20 chr6:31789712-31789732 1.0000 20 chr21:45338047-45338067 1.0000 20 chr1:151300021-151300041 1.0000 20 chr12:108999534-10899955 1.0000 20 chr17:46914998-46915018 1.0000 20 chr10:75910688-75910708 1.0000 20 chr2:114384780-114384800 1.0000 20 chr11:129873539-12987355 1.0000 20 chr17:79398653-79398673 1.0000 20 chr2:228473526-228473546 1.0000 20 chr20:25037937-25037957 1.0000 20 chr5:86563950-86563970 1.0000 20 chr3:48075640-48075660 1.0000 20 chr22:44550591-44550611 1.0000 20 chr19:12723742-12723762 1.0000 20 chr10:45469230-45469250 1.0000 20 chr19:38704676-38704696 1.0000 20 chr15:96534212-96534232 1.0000 20 chr18:60770526-60770546 1.0000 20 chr1:26493424-26493444 1.0000 20 chrX:71401502-71401522 1.0000 20 chr12:110841659-11084167 1.0000 20 chr15:30918131-30918151 1.0000 20 chr10:1296083-1296103 1.0000 20 chr22:51222110-51222130 1.0000 20 chr2:232461801-232461821 1.0000 20 chr4:128983427-128983447 1.0000 20 chr8:354862-354882 1.0000 20 chr13:115047727-11504774 1.0000 20 chr1:9471217-9471237 1.0000 20 chr4:24659797-24659817 1.0000 20 chr2:68478672-68478692 1.0000 20 chr2:222438517-222438537 1.0000 20 chr17:43373578-43373598 1.0000 20 chr21:45341556-45341576 1.0000 20 chr16:84982981-84983001 1.0000 20 chr20:10653404-10653424 1.0000 20 chrX:75368770-75368790 1.0000 20 chr2:20364517-20364537 1.0000 20 chr5:856376-856396 1.0000 20 chr22:30838650-30838670 1.0000 20 chr11:118272185-11827220 1.0000 20 chr17:33776783-33776803 1.0000 20 chr14:24505887-24505907 1.0000 20 chr8:144544397-144544417 1.0000 20 chr15:63893863-63893883 1.0000 20 chr22:35807296-35807316 1.0000 20 chr3:193788646-193788666 1.0000 20 chr1:231473968-231473988 1.0000 20 chr14:34675144-34675164 1.0000 20 chr15:41780188-41780208 1.0000 20 chr20:31181801-31181821 1.0000 20 chr6:5261063-5261083 1.0000 20 chr10:51565165-51565185 1.0000 20 chr15:42900398-42900418 1.0000 20 chr12:49351318-49351338 1.0000 20 chr14:106260405-10626042 1.0000 20 chr11:34937836-34937856 1.0000 20 chr22:34313846-34313866 1.0000 20 chr7:51085871-51085891 1.0000 20 chr1:156094501-156094521 1.0000 20 chr9:87324798-87324818 1.0000 20 chr3:156361757-156361777 1.0000 20 chr20:19291673-19291693 1.0000 20 chr17:7760904-7760924 1.0000 20 chr9:123605279-123605299 1.0000 20 chr7:129792040-129792060 1.0000 20 chr11:13484842-13484862 1.0000 20 chr2:179278471-179278491 1.0000 20 chr21:45379262-45379282 1.0000 20 chr6:30919805-30919825 1.0000 20 chr4:786753-786773 1.0000 20 chr21:44887902-44887922 1.0000 20 chr4:113436265-113436285 1.0000 20 chr1:232941076-232941096 1.0000 20 chr9:137029276-137029296 1.0000 20 chr17:53169094-53169114 1.0000 20 chr7:2749226-2749246 1.0000 20 chr9:91119439-91119459 1.0000 20 chr18:32820689-32820709 1.0000 20 chr8:144751695-144751715 1.0000 20 chr5:150992428-150992448 1.0000 20 chr10:75118546-75118566 1.0000 20 chr20:1415697-1415717 1.0000 20 chr6:26577800-26577820 1.0000 20 chr3:137769975-137769995 1.0000 20 chr13:38923842-38923862 1.0000 20 chr13:114518504-11451852 1.0000 20 chr19:41903595-41903615 1.0000 20 chr16:90088973-90088993 1.0000 20 chr9:130890625-130890645 1.0000 20 chr1:170501070-170501090 1.0000 20 chr15:64385744-64385764 1.0000 20 chr7:91763166-91763186 1.0000 20 chr4:185342901-185342921 1.0000 20 chr19:1095468-1095488 1.0000 20 chr2:26467620-26467640 1.0000 20 chr17:4167283-4167303 1.0000 20 chr10:12085051-12085071 1.0000 20 chr1:150206948-150206968 1.0000 20 chr12:64173746-64173766 1.0000 20 chr11:34073067-34073087 1.0000 20 chr2:96730720-96730740 1.0000 20 chr11:13161949-13161969 1.0000 20 chr4:190519456-190519476 1.0000 20 chr19:41860108-41860128 1.0000 20 chr3:48342843-48342863 1.0000 20 chr6:34393992-34394012 1.0000 20 chr1:87379918-87379938 1.0000 20 chr3:58223039-58223059 1.0000 20 chr16:87985097-87985117 1.0000 20 chr8:11640425-11640445 1.0000 20 chr12:27091356-27091376 1.0000 20 chr20:29651450-29651470 1.0000 20 chr10:94333742-94333762 1.0000 20 chr20:31155703-31155723 1.0000 20 chr17:53046055-53046075 1.0000 20 chr1:42354664-42354684 1.0000 20 chr6:31509997-31510017 1.0000 20 chr22:50778772-50778792 1.0000 20 chr17:27717312-27717332 1.0000 20 chr20:36156424-36156444 1.0000 20 chr2:241507476-241507496 1.0000 20 chr2:234328474-234328494 1.0000 20 chr1:181013644-181013664 1.0000 20 chr7:123464642-123464662 1.0000 20 chr6:170709244-170709264 1.0000 20 chr8:74205984-74206004 1.0000 20 chr20:25262460-25262480 1.0000 20 chr21:35789971-35789991 1.0000 20 chr3:23802753-23802773 1.0000 20 chr1:207226346-207226366 1.0000 20 chr19:13068132-13068152 1.0000 20 chr2:42588491-42588511 1.0000 20 chr4:103749180-103749200 1.0000 20 chr22:29351969-29351989 1.0000 20 chr20:44717949-44717969 1.0000 20 chr17:65362731-65362751 1.0000 20 chr2:176032894-176032914 1.0000 20 chr4:40057331-40057351 1.0000 20 chr12:94853405-94853425 1.0000 20 chr10:17685995-17686015 1.0000 20 chr10:1278709-1278729 1.0000 20 chr7:123387812-123387832 1.0000 20 chr12:56709827-56709847 1.0000 20 chr6:25147545-25147565 1.0000 20 chr2:8518693-8518713 1.0000 20 chr10:130262801-13026282 1.0000 20 chr20:18447920-18447940 1.0000 20 chr12:121291756-12129177 1.0000 20 chr2:99388663-99388683 1.0000 20 chr16:30412052-30412072 1.0000 20 chr4:15683243-15683263 1.0000 20 chr15:78151547-78151567 1.0000 20 chr3:49131541-49131561 1.0000 20 chr5:56469860-56469880 1.0000 20 chr1:101406875-101406895 1.0000 20 chr17:25790546-25790566 1.0000 20 chr1:62902572-62902592 1.0000 20 chr9:135545698-135545718 1.0000 20 chr6:44355274-44355294 1.0000 20 chr4:144434626-144434646 1.0000 20 chr21:11130258-11130278 1.0000 20 chr16:30056812-30056832 1.0000 20 chr19:10542101-10542121 1.0000 20 chr5:5422605-5422625 1.0000 20 chr15:51369394-51369414 1.0000 20 chr4:128703669-128703689 1.0000 20 chr3:118529691-118529711 1.0000 20 chr17:49198458-49198478 1.0000 20 chr11:60104736-60104756 1.0000 20 chr2:202507603-202507623 1.0000 20 chr14:71109648-71109668 1.0000 20 chr17:55362768-55362788 1.0000 20 chr1:224567891-224567911 1.0000 20 chr1:76251787-76251807 1.0000 20 chr2:55459664-55459684 1.0000 20 chr9:123698434-123698454 1.0000 20 chr9:95895906-95895926 1.0000 20 chr14:58666715-58666735 1.0000 20 chr17:4843553-4843573 1.0000 20 chr21:45378430-45378450 1.0000 20 chr6:170707912-170707932 1.0000 20 chr12:31886216-31886236 1.0000 20 chr8:22576943-22576963 1.0000 20 chr1:31971734-31971754 1.0000 20 chr11:121163212-12116323 1.0000 20 chr1:40242124-40242144 1.0000 20 chr1:17054998-17055018 1.0000 20 chr21:35357577-35357597 1.0000 20 chr5:179105411-179105431 1.0000 20 chr17:79399550-79399570 1.0000 20 chr9:101984400-101984420 1.0000 20 chr15:51914357-51914377 1.0000 20 chr17:45382709-45382729 1.0000 20 chr17:39822168-39822188 1.0000 20 chr3:107580889-107580909 1.0000 20 chr2:95787625-95787645 1.0000 20 chr7:69066519-69066539 1.0000 20 chr1:231664186-231664206 1.0000 20 chr19:12896100-12896120 1.0000 20 chr2:231921428-231921448 1.0000 20 chr6:83902905-83902925 1.0000 20 chr11:120215228-12021524 1.0000 20 chr13:30920762-30920782 1.0000 20 chr15:75287761-75287781 1.0000 20 chr6:31620613-31620633 1.0000 20 chr4:26987609-26987629 1.0000 20 chr1:26437683-26437703 1.0000 20 chr3:53231240-53231260 1.0000 20 chr9:98637887-98637907 1.0000 20 chr1:24306888-24306908 1.0000 20 chr15:78730466-78730486 1.0000 20 chr12:69139677-69139697 1.0000 20 chr3:72226960-72226980 1.0000 20 chr5:169010737-169010757 1.0000 20 chr22:41252855-41252875 1.0000 20 chr12:57941003-57941023 1.0000 20 chr19:35788327-35788347 1.0000 20 chr8:42249120-42249140 1.0000 20 chrX:38782932-38782952 1.0000 20 chr15:22833394-22833414 1.0000 20 chr8:38759369-38759389 1.0000 20 chr1:151736044-151736064 1.0000 20 chr2:219536904-219536924 1.0000 20 chr6:137486661-137486681 1.0000 20 chr17:70419410-70419430 1.0000 20 chr10:76970419-76970439 1.0000 20 chr17:37607552-37607572 1.0000 20 chr17:73201647-73201667 1.0000 20 chr12:29534165-29534185 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_IRF5/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/IRF5.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.231 C 0.275 G 0.267 T 0.227 Background letter frequencies (from file dataset with add-one prior applied): A 0.231 C 0.275 G 0.267 T 0.227 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GTGGTKKG MEME-1 width = 8 sites = 31 llr = 230 E-value = 2.0e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGGTKKG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :3::::11 pos.-specific C :::1:::: probability G a:89:347 matrix T :72:a651 bits 2.1 * 1.9 * * 1.7 * * 1.5 * ** Relative 1.3 ***** Entropy 1.1 ****** (10.7 bits) 0.9 ****** * 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTGGTTTG consensus A GG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGTKKG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:224567891-224567911 7 1.35e-05 AACTCA GTGGTTTG CCTGTG chr21:45379262-45379282 10 1.35e-05 gtgtgacgt gtggtttg cag chr10:45469230-45469250 3 1.35e-05 TT GTGGTTTG TGTGTGTTGG chr7:69066519-69066539 1 2.94e-05 . gtggttgg gagtaaggga chr17:79399550-79399570 5 2.94e-05 tgat gtggttgg tggtgatg chr17:79398653-79398673 1 2.94e-05 . gtggttgg tggtgatgat chr16:30056812-30056832 2 4.52e-05 t gtggtgtg tatggtgtgt chr5:150992428-150992448 6 4.52e-05 tgtgt gtggtgtg tgtggtg chr9:91119439-91119459 2 4.52e-05 t gtggtgtg tggtatacgt chr4:26987609-26987629 8 5.90e-05 GTATCTT GAGGTTTG AGGTT chr3:61340478-61340498 4 5.90e-05 gtt gaggtttg ctttgtggt chr10:1296083-1296103 6 9.14e-05 GCTCG GTGGTTAG GGTGAGG chr12:108999534-10899955 8 9.14e-05 taggtga gtggttag tggtc chr11:120215228-12021524 2 1.42e-04 T GTGGTTTA CTGAGAGGAA chr4:113436265-113436285 10 1.56e-04 TCGCTCGCG GTTGTTGG CCT chr17:45382709-45382729 5 1.85e-04 GGTG GTGGTTGT TTTTGTGG chr10:51565165-51565185 10 1.85e-04 GTATGGCGA GAGGTGTG GGA chr15:96534212-96534232 12 1.85e-04 GTTTCTAgtt gtggttgt g chr13:113527566-11352758 1 1.85e-04 . GAGGTGTG GCTTTGTCTT chr2:231921428-231921448 12 3.40e-04 TGACCTCGAG GAGGTTTA G chr22:35807296-35807316 6 3.40e-04 TGGCT GTTGTGGG TCACGCA chr21:45338047-45338067 6 3.40e-04 tgggt gttgtggg agttgtg chr2:234328474-234328494 4 3.81e-04 TGT GTGCTTTG AGGTTTCTA chr3:137769975-137769995 1 3.81e-04 . gtggtggt agtgaaatga chr7:51085871-51085891 1 4.23e-04 . gtggttat ggtaatcgtg chr22:50778772-50778792 10 4.72e-04 ggtgtgtgt gtggtatg gag chr22:44550591-44550611 2 4.72e-04 t gtggttaa gtagtctgtg chr20:10653404-10653424 5 4.96e-04 CCTT GAGGTTGA AGGTGTTG chr2:179278471-179278491 11 5.12e-04 CCTCTTGCTC GTGCTTGG TT chr18:60770526-60770546 10 5.70e-04 tgtgtgtgt gatgtgtg gtg chr8:144751695-144751715 8 6.69e-04 gggaaca gatgtggg tttta -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGTKKG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:224567891-224567911 1.3e-05 6_[+1]_6 chr21:45379262-45379282 1.3e-05 9_[+1]_3 chr10:45469230-45469250 1.3e-05 2_[+1]_10 chr7:69066519-69066539 2.9e-05 [+1]_12 chr17:79399550-79399570 2.9e-05 4_[+1]_8 chr17:79398653-79398673 2.9e-05 [+1]_12 chr16:30056812-30056832 4.5e-05 1_[+1]_11 chr5:150992428-150992448 4.5e-05 5_[+1]_7 chr9:91119439-91119459 4.5e-05 1_[+1]_11 chr4:26987609-26987629 5.9e-05 7_[+1]_5 chr3:61340478-61340498 5.9e-05 3_[+1]_9 chr10:1296083-1296103 9.1e-05 5_[+1]_7 chr12:108999534-10899955 9.1e-05 7_[+1]_5 chr11:120215228-12021524 0.00014 1_[+1]_11 chr4:113436265-113436285 0.00016 9_[+1]_3 chr17:45382709-45382729 0.00019 4_[+1]_8 chr10:51565165-51565185 0.00019 9_[+1]_3 chr15:96534212-96534232 0.00019 11_[+1]_1 chr13:113527566-11352758 0.00019 [+1]_12 chr2:231921428-231921448 0.00034 11_[+1]_1 chr22:35807296-35807316 0.00034 5_[+1]_7 chr21:45338047-45338067 0.00034 5_[+1]_7 chr2:234328474-234328494 0.00038 3_[+1]_9 chr3:137769975-137769995 0.00038 [+1]_12 chr7:51085871-51085891 0.00042 [+1]_12 chr22:50778772-50778792 0.00047 9_[+1]_3 chr22:44550591-44550611 0.00047 1_[+1]_11 chr20:10653404-10653424 0.0005 4_[+1]_8 chr2:179278471-179278491 0.00051 10_[+1]_2 chr18:60770526-60770546 0.00057 9_[+1]_3 chr8:144751695-144751715 0.00067 7_[+1]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGTKKG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGGTKKG width=8 seqs=31 chr1:224567891-224567911 ( 7) GTGGTTTG 1 chr21:45379262-45379282 ( 10) GTGGTTTG 1 chr10:45469230-45469250 ( 3) GTGGTTTG 1 chr7:69066519-69066539 ( 1) GTGGTTGG 1 chr17:79399550-79399570 ( 5) GTGGTTGG 1 chr17:79398653-79398673 ( 1) GTGGTTGG 1 chr16:30056812-30056832 ( 2) GTGGTGTG 1 chr5:150992428-150992448 ( 6) GTGGTGTG 1 chr9:91119439-91119459 ( 2) GTGGTGTG 1 chr4:26987609-26987629 ( 8) GAGGTTTG 1 chr3:61340478-61340498 ( 4) GAGGTTTG 1 chr10:1296083-1296103 ( 6) GTGGTTAG 1 chr12:108999534-10899955 ( 8) GTGGTTAG 1 chr11:120215228-12021524 ( 2) GTGGTTTA 1 chr4:113436265-113436285 ( 10) GTTGTTGG 1 chr17:45382709-45382729 ( 5) GTGGTTGT 1 chr10:51565165-51565185 ( 10) GAGGTGTG 1 chr15:96534212-96534232 ( 12) GTGGTTGT 1 chr13:113527566-11352758 ( 1) GAGGTGTG 1 chr2:231921428-231921448 ( 12) GAGGTTTA 1 chr22:35807296-35807316 ( 6) GTTGTGGG 1 chr21:45338047-45338067 ( 6) GTTGTGGG 1 chr2:234328474-234328494 ( 4) GTGCTTTG 1 chr3:137769975-137769995 ( 1) GTGGTGGT 1 chr7:51085871-51085891 ( 1) GTGGTTAT 1 chr22:50778772-50778792 ( 10) GTGGTATG 1 chr22:44550591-44550611 ( 2) GTGGTTAA 1 chr20:10653404-10653424 ( 5) GAGGTTGA 1 chr2:179278471-179278491 ( 11) GTGCTTGG 1 chr18:60770526-60770546 ( 10) GATGTGTG 1 chr8:144751695-144751715 ( 8) GATGTGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGTKKG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.40984 E= 2.0e-009 -1160 -1160 191 -1160 16 -1160 -1160 171 -1160 -1160 165 -49 -1160 -209 181 -1160 -1160 -1160 -1160 214 -284 -1160 27 151 -84 -1160 54 109 -84 -1160 148 -81 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGTKKG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 31 E= 2.0e-009 0.000000 0.000000 1.000000 0.000000 0.258065 0.000000 0.000000 0.741935 0.000000 0.000000 0.838710 0.161290 0.000000 0.064516 0.935484 0.000000 0.000000 0.000000 0.000000 1.000000 0.032258 0.000000 0.322581 0.645161 0.129032 0.000000 0.387097 0.483871 0.129032 0.000000 0.741935 0.129032 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGTKKG MEME-1 regular expression -------------------------------------------------------------------------------- G[TA]GGT[TG][TG]G -------------------------------------------------------------------------------- Time 1.96 secs. ******************************************************************************** ******************************************************************************** MOTIF MMACCACM MEME-2 width = 8 sites = 32 llr = 220 E-value = 1.7e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif MMACCACM MEME-2 Description -------------------------------------------------------------------------------- Simplified A 558::9:7 pos.-specific C 43:9a:a3 probability G :11::1:: matrix T 1111:::: bits 2.1 1.9 * 1.7 *** 1.5 **** Relative 1.3 **** Entropy 1.1 ****** (9.9 bits) 0.9 ****** 0.6 * ****** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAACCACA consensus CC C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MMACCACM MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr22:34313846-34313866 4 1.37e-05 GAT AAACCACA GTCTCACGA chr5:856376-856396 8 1.37e-05 caaacag aaaccaca acaca chr21:44887902-44887922 13 4.62e-05 agcacacacc acaccaca chr7:129792040-129792060 5 4.62e-05 ACAT ACACCACA GACCACAA chr15:41780188-41780208 9 4.62e-05 cataccac acaccaca caca chr2:20364517-20364537 6 4.62e-05 cagac acaccaca ctcacca chr1:9471217-9471237 13 4.62e-05 caccaccaca acaccaca chr3:23802753-23802773 6 6.25e-05 CGGTA AAACCACC AACTAAA chr12:121291756-12129177 10 8.19e-05 ACACCACCA CCACcaca cac chr1:142817164-142817184 4 8.19e-05 caa ccaccaca aAACCCAAA chr8:28705007-28705027 4 1.01e-04 cca caaccacc actactacc chr3:15139550-15139570 13 1.01e-04 CCATGCCACA CAACCACC chr1:42354664-42354684 7 1.48e-04 caccac ataccaca tacaca chr3:48075640-48075660 5 1.48e-04 AACA TAACCACA GAGTTAGG chr19:41903595-41903615 11 1.87e-04 TGCATTCTAT CTACCACA GA chr13:30920762-30920782 9 2.80e-04 CCAAGCCC AGACCACA TTAA chr19:38704676-38704696 4 3.26e-04 TTT CTACCACC CACAACACC chr4:40057331-40057351 13 3.80e-04 accactacca tcaccacc chr12:94853405-94853425 9 4.28e-04 CGGGGACA CCTCCACA GCTC chr14:106260405-10626042 3 4.28e-04 cc aagccaca atgataaaca chr2:202507603-202507623 10 4.57e-04 GTGGCGCTG CAATCACA GCT chr2:8518693-8518713 11 4.57e-04 CACAAATGCA AAACCGCA CA chr19:35788327-35788347 5 5.09e-04 caca catccacc acgctaca chr21:35357577-35357597 4 5.09e-04 cac acatcaca ctacacata chr2:96730720-96730740 7 5.09e-04 tccatc catccacc catcta chr22:29351969-29351989 5 6.93e-04 CCAC AAACCAAA CAGGATGT chr12:31886216-31886236 6 7.66e-04 aggtg aagccacc tgaaagg chr10:130262801-13026282 8 7.66e-04 tcctcct cctccacc atcct chr20:31155703-31155723 11 7.66e-04 atcaccatca ttaccacc ac chrX:38782932-38782952 13 8.20e-04 TCAAACCTGA TGACCACA chr6:34393992-34394012 11 8.71e-04 ACGCACTAGG AAACCGCC GC chr9:87324798-87324818 13 1.00e-03 GGTGGCTTTC CACCCACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MMACCACM MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr22:34313846-34313866 1.4e-05 3_[+2]_9 chr5:856376-856396 1.4e-05 7_[+2]_5 chr21:44887902-44887922 4.6e-05 12_[+2] chr7:129792040-129792060 4.6e-05 4_[+2]_8 chr15:41780188-41780208 4.6e-05 8_[+2]_4 chr2:20364517-20364537 4.6e-05 5_[+2]_7 chr1:9471217-9471237 4.6e-05 12_[+2] chr3:23802753-23802773 6.3e-05 5_[+2]_7 chr12:121291756-12129177 8.2e-05 9_[+2]_3 chr1:142817164-142817184 8.2e-05 3_[+2]_9 chr8:28705007-28705027 0.0001 3_[+2]_9 chr3:15139550-15139570 0.0001 12_[+2] chr1:42354664-42354684 0.00015 6_[+2]_6 chr3:48075640-48075660 0.00015 4_[+2]_8 chr19:41903595-41903615 0.00019 10_[+2]_2 chr13:30920762-30920782 0.00028 8_[+2]_4 chr19:38704676-38704696 0.00033 3_[+2]_9 chr4:40057331-40057351 0.00038 12_[+2] chr12:94853405-94853425 0.00043 8_[+2]_4 chr14:106260405-10626042 0.00043 2_[+2]_10 chr2:202507603-202507623 0.00046 9_[+2]_3 chr2:8518693-8518713 0.00046 10_[+2]_2 chr19:35788327-35788347 0.00051 4_[+2]_8 chr21:35357577-35357597 0.00051 3_[+2]_9 chr2:96730720-96730740 0.00051 6_[+2]_6 chr22:29351969-29351989 0.00069 4_[+2]_8 chr12:31886216-31886236 0.00077 5_[+2]_7 chr10:130262801-13026282 0.00077 7_[+2]_5 chr20:31155703-31155723 0.00077 10_[+2]_2 chrX:38782932-38782952 0.00082 12_[+2] chr6:34393992-34394012 0.00087 10_[+2]_2 chr9:87324798-87324818 0.001 12_[+2] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MMACCACM MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MMACCACM width=8 seqs=32 chr22:34313846-34313866 ( 4) AAACCACA 1 chr5:856376-856396 ( 8) AAACCACA 1 chr21:44887902-44887922 ( 13) ACACCACA 1 chr7:129792040-129792060 ( 5) ACACCACA 1 chr15:41780188-41780208 ( 9) ACACCACA 1 chr2:20364517-20364537 ( 6) ACACCACA 1 chr1:9471217-9471237 ( 13) ACACCACA 1 chr3:23802753-23802773 ( 6) AAACCACC 1 chr12:121291756-12129177 ( 10) CCACCACA 1 chr1:142817164-142817184 ( 4) CCACCACA 1 chr8:28705007-28705027 ( 4) CAACCACC 1 chr3:15139550-15139570 ( 13) CAACCACC 1 chr1:42354664-42354684 ( 7) ATACCACA 1 chr3:48075640-48075660 ( 5) TAACCACA 1 chr19:41903595-41903615 ( 11) CTACCACA 1 chr13:30920762-30920782 ( 9) AGACCACA 1 chr19:38704676-38704696 ( 4) CTACCACC 1 chr4:40057331-40057351 ( 13) TCACCACC 1 chr12:94853405-94853425 ( 9) CCTCCACA 1 chr14:106260405-10626042 ( 3) AAGCCACA 1 chr2:202507603-202507623 ( 10) CAATCACA 1 chr2:8518693-8518713 ( 11) AAACCGCA 1 chr19:35788327-35788347 ( 5) CATCCACC 1 chr21:35357577-35357597 ( 4) ACATCACA 1 chr2:96730720-96730740 ( 7) CATCCACC 1 chr22:29351969-29351989 ( 5) AAACCAAA 1 chr12:31886216-31886236 ( 6) AAGCCACC 1 chr10:130262801-13026282 ( 8) CCTCCACC 1 chr20:31155703-31155723 ( 11) TTACCACC 1 chrX:38782932-38782952 ( 13) TGACCACA 1 chr6:34393992-34394012 ( 11) AAACCGCC 1 chr9:87324798-87324818 ( 13) CACCCACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MMACCACM MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.39464 E= 1.7e-003 111 45 -1164 -86 102 32 -209 -86 176 -313 -209 -86 -1164 177 -1164 -186 -1164 186 -1164 -1164 202 -1164 -209 -1164 -288 182 -1164 -1164 150 32 -1164 -1164 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MMACCACM MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 1.7e-003 0.500000 0.375000 0.000000 0.125000 0.468750 0.343750 0.062500 0.125000 0.781250 0.031250 0.062500 0.125000 0.000000 0.937500 0.000000 0.062500 0.000000 1.000000 0.000000 0.000000 0.937500 0.000000 0.062500 0.000000 0.031250 0.968750 0.000000 0.000000 0.656250 0.343750 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MMACCACM MEME-2 regular expression -------------------------------------------------------------------------------- [AC][AC]ACCAC[AC] -------------------------------------------------------------------------------- Time 2.69 secs. ******************************************************************************** ******************************************************************************** MOTIF GTRTGTGT MEME-3 width = 8 sites = 9 llr = 87 E-value = 2.0e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTRTGTGT MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::31:::: pos.-specific C ::1::::: probability G 9:6:a:a: matrix T 1a:9:a:a bits 2.1 * * * 1.9 * **** 1.7 * ***** 1.5 ** ***** Relative 1.3 ** ***** Entropy 1.1 ** ***** (13.9 bits) 0.9 ** ***** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTGTGTGT consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTRTGTGT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr21:45378430-45378450 1 1.35e-05 . gtgtgtgt ggtgcgtgtg chr22:50778772-50778792 2 1.35e-05 g gtgtgtgt gtggtatgga chr16:84982981-84983001 11 1.35e-05 ggttttgtct gtgtgtgt gc chr18:60770526-60770546 2 1.35e-05 t gtgtgtgt gatgtgtggt chr10:1278709-1278729 11 2.52e-05 ggtatatatg gtatgtgt gt chr8:11640425-11640445 5 2.52e-05 GTGT GTATGTGT GTATGATC chr22:44550591-44550611 13 3.91e-05 tggttaagta gtctgtgt chr20:31181801-31181821 3 6.43e-05 CC GTGAGTGT GACCAGATTT chr10:17685995-17686015 7 7.42e-05 CCACTC TTATGTGT GACTAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTRTGTGT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr21:45378430-45378450 1.3e-05 [+3]_12 chr22:50778772-50778792 1.3e-05 1_[+3]_11 chr16:84982981-84983001 1.3e-05 10_[+3]_2 chr18:60770526-60770546 1.3e-05 1_[+3]_11 chr10:1278709-1278729 2.5e-05 10_[+3]_2 chr8:11640425-11640445 2.5e-05 4_[+3]_8 chr22:44550591-44550611 3.9e-05 12_[+3] chr20:31181801-31181821 6.4e-05 2_[+3]_10 chr10:17685995-17686015 7.4e-05 6_[+3]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTRTGTGT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTRTGTGT width=8 seqs=9 chr21:45378430-45378450 ( 1) GTGTGTGT 1 chr22:50778772-50778792 ( 2) GTGTGTGT 1 chr16:84982981-84983001 ( 11) GTGTGTGT 1 chr18:60770526-60770546 ( 2) GTGTGTGT 1 chr10:1278709-1278729 ( 11) GTATGTGT 1 chr8:11640425-11640445 ( 5) GTATGTGT 1 chr22:44550591-44550611 ( 13) GTCTGTGT 1 chr20:31181801-31181821 ( 3) GTGAGTGT 1 chr10:17685995-17686015 ( 7) TTATGTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTRTGTGT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.34207 E= 2.0e-001 -982 -982 174 -103 -982 -982 -982 214 53 -131 106 -982 -106 -982 -982 197 -982 -982 191 -982 -982 -982 -982 214 -982 -982 191 -982 -982 -982 -982 214 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTRTGTGT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 2.0e-001 0.000000 0.000000 0.888889 0.111111 0.000000 0.000000 0.000000 1.000000 0.333333 0.111111 0.555556 0.000000 0.111111 0.000000 0.000000 0.888889 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTRTGTGT MEME-3 regular expression -------------------------------------------------------------------------------- GT[GA]TGTGT -------------------------------------------------------------------------------- Time 4.22 secs. ******************************************************************************** ******************************************************************************** MOTIF TCTCRCGA MEME-4 width = 8 sites = 13 llr = 114 E-value = 2.2e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTCRCGA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :1::4::9 pos.-specific C :92a:91: probability G ::::6:91 matrix T a:8::1:: bits 2.1 * 1.9 * * 1.7 * * * 1.5 **** *** Relative 1.3 **** *** Entropy 1.1 ******** (12.7 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCTCGCGA consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCRCGA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr17:4843553-4843573 1 1.76e-05 . TCTCGCGA TAGACACAGC chr5:56469860-56469880 3 1.76e-05 GA TCTCGCGA GACTTGGCCC chr17:53046055-53046075 1 1.76e-05 . TCTCGCGA GGCGTGCTCC chr1:232941076-232941096 10 1.76e-05 TTCCGCAAA TCTCGCGA GAT chr3:53231240-53231260 12 3.29e-05 gacagtgagt tctcacga g chr3:107580889-107580909 13 3.29e-05 gtgagggagt tctcacga chr22:34313846-34313866 13 3.29e-05 TAAACCACAG TCTCACGA chr3:49131541-49131561 4 5.43e-05 GGA TCCCGCGA GATCTGGGA chr4:15683243-15683263 1 5.43e-05 . TCCCGCGA GAGGCGGAAA chr13:114518504-11451852 11 1.02e-04 cccgtgctat tctcgtga ta chr5:169010737-169010757 4 1.41e-04 ACT TCTCGCGG GAACTGCAT chr15:78151547-78151567 12 1.66e-04 actcactcac tatcacga g chr2:219536904-219536924 9 1.82e-04 TCTGAACT TCTCACCA GTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCRCGA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:4843553-4843573 1.8e-05 [+4]_12 chr5:56469860-56469880 1.8e-05 2_[+4]_10 chr17:53046055-53046075 1.8e-05 [+4]_12 chr1:232941076-232941096 1.8e-05 9_[+4]_3 chr3:53231240-53231260 3.3e-05 11_[+4]_1 chr3:107580889-107580909 3.3e-05 12_[+4] chr22:34313846-34313866 3.3e-05 12_[+4] chr3:49131541-49131561 5.4e-05 3_[+4]_9 chr4:15683243-15683263 5.4e-05 [+4]_12 chr13:114518504-11451852 0.0001 10_[+4]_2 chr5:169010737-169010757 0.00014 3_[+4]_9 chr15:78151547-78151567 0.00017 11_[+4]_1 chr2:219536904-219536924 0.00018 8_[+4]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCRCGA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTCRCGA width=8 seqs=13 chr17:4843553-4843573 ( 1) TCTCGCGA 1 chr5:56469860-56469880 ( 3) TCTCGCGA 1 chr17:53046055-53046075 ( 1) TCTCGCGA 1 chr1:232941076-232941096 ( 10) TCTCGCGA 1 chr3:53231240-53231260 ( 12) TCTCACGA 1 chr3:107580889-107580909 ( 13) TCTCACGA 1 chr22:34313846-34313866 ( 13) TCTCACGA 1 chr3:49131541-49131561 ( 4) TCCCGCGA 1 chr4:15683243-15683263 ( 1) TCCCGCGA 1 chr13:114518504-11451852 ( 11) TCTCGTGA 1 chr5:169010737-169010757 ( 4) TCTCGCGG 1 chr15:78151547-78151567 ( 12) TATCACGA 1 chr2:219536904-219536924 ( 9) TCTCACCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCRCGA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.4923 E= 2.2e-001 -1035 -1035 -1035 214 -159 175 -1035 -1035 -1035 -84 -1035 190 -1035 186 -1035 -1035 73 -1035 121 -1035 -1035 175 -1035 -156 -1035 -184 179 -1035 200 -1035 -179 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCRCGA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 2.2e-001 0.000000 0.000000 0.000000 1.000000 0.076923 0.923077 0.000000 0.000000 0.000000 0.153846 0.000000 0.846154 0.000000 1.000000 0.000000 0.000000 0.384615 0.000000 0.615385 0.000000 0.000000 0.923077 0.000000 0.076923 0.000000 0.076923 0.923077 0.000000 0.923077 0.000000 0.076923 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCRCGA MEME-4 regular expression -------------------------------------------------------------------------------- TCTC[GA]CGA -------------------------------------------------------------------------------- Time 7.33 secs. ******************************************************************************** ******************************************************************************** MOTIF TCTTTTYC MEME-5 width = 8 sites = 5 llr = 54 E-value = 7.3e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTTTTYC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :a::::4a probability G :::::::: matrix T a:aaaa6: bits 2.1 * **** 1.9 ****** * 1.7 ****** * 1.5 ****** * Relative 1.3 ****** * Entropy 1.1 ******** (15.5 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCTTTTTC consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTTTYC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:12896100-12896120 4 1.03e-05 acc tctttttc acacacaca chr4:190519456-190519476 4 1.03e-05 TTC TCTTTTTC TTTGATTTC chr14:89290841-89290861 1 1.03e-05 . TCTTTTTC CAACCAAGTT chr14:58666715-58666735 3 2.29e-05 CC TCTTTTCC CCTAGTCCTG chr14:34675144-34675164 11 2.29e-05 cctactacca tcttttcc ac -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTTTYC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:12896100-12896120 1e-05 3_[+5]_9 chr4:190519456-190519476 1e-05 3_[+5]_9 chr14:89290841-89290861 1e-05 [+5]_12 chr14:58666715-58666735 2.3e-05 2_[+5]_10 chr14:34675144-34675164 2.3e-05 10_[+5]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTTTYC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTTTTYC width=8 seqs=5 chr19:12896100-12896120 ( 4) TCTTTTTC 1 chr4:190519456-190519476 ( 4) TCTTTTTC 1 chr14:89290841-89290861 ( 1) TCTTTTTC 1 chr14:58666715-58666735 ( 3) TCTTTTCC 1 chr14:34675144-34675164 ( 11) TCTTTTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTTTYC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.59397 E= 7.3e+001 -897 -897 -897 214 -897 186 -897 -897 -897 -897 -897 214 -897 -897 -897 214 -897 -897 -897 214 -897 -897 -897 214 -897 54 -897 140 -897 186 -897 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTTTYC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.3e+001 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.400000 0.000000 0.600000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTTTYC MEME-5 regular expression -------------------------------------------------------------------------------- TCTTTT[TC]C -------------------------------------------------------------------------------- Time 10.48 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:34994668-34994688 7.09e-01 20 chr8:26306652-26306672 3.93e-01 20 chr3:61340478-61340498 2.31e-02 3_[+1(5.90e-05)]_9 chr14:89290841-89290861 8.53e-04 [+5(1.03e-05)]_12 chr3:15139550-15139570 8.90e-02 20 chr13:113527566-11352758 6.52e-03 20 chr17:40610986-40611006 3.36e-01 20 chr14:107253164-10725318 6.35e-02 20 chr15:32907536-32907556 1.77e-01 20 chr5:126094470-126094490 2.44e-01 20 chr12:76424398-76424418 4.58e-01 20 chr9:140354404-140354424 7.60e-01 20 chr8:28705007-28705027 4.76e-02 20 chr8:74206504-74206524 5.32e-01 20 chr5:133512874-133512894 3.59e-02 20 chr16:71918456-71918476 5.09e-01 20 chr6:31794929-31794949 3.94e-01 20 chr1:142817164-142817184 5.93e-02 3_[+2(8.19e-05)]_9 chr17:71228667-71228687 5.58e-01 20 chr6:31789712-31789732 1.91e-01 20 chr21:45338047-45338067 3.17e-02 20 chr1:151300021-151300041 2.82e-01 20 chr12:108999534-10899955 1.40e-02 7_[+1(9.14e-05)]_5 chr17:46914998-46915018 4.51e-01 20 chr10:75910688-75910708 9.26e-01 20 chr2:114384780-114384800 3.91e-01 20 chr11:129873539-12987355 7.93e-01 20 chr17:79398653-79398673 3.02e-02 [+1(2.94e-05)]_12 chr2:228473526-228473546 7.42e-01 20 chr20:25037937-25037957 8.43e-01 20 chr5:86563950-86563970 3.09e-01 20 chr3:48075640-48075660 5.10e-02 20 chr22:44550591-44550611 2.73e-03 12_[+3(3.91e-05)] chr19:12723742-12723762 6.55e-01 20 chr10:45469230-45469250 6.60e-05 9_[+3(1.35e-05)]_3 chr19:38704676-38704696 6.96e-02 20 chr15:96534212-96534232 1.16e-02 20 chr18:60770526-60770546 1.53e-03 1_[+3(1.35e-05)]_11 chr1:26493424-26493444 6.31e-01 20 chrX:71401502-71401522 9.75e-01 20 chr12:110841659-11084167 3.40e-01 20 chr15:30918131-30918151 7.84e-01 20 chr10:1296083-1296103 3.06e-02 5_[+1(9.14e-05)]_7 chr22:51222110-51222130 8.57e-01 20 chr2:232461801-232461821 9.19e-01 20 chr4:128983427-128983447 8.54e-01 20 chr8:354862-354882 4.36e-01 20 chr13:115047727-11504774 6.41e-01 20 chr1:9471217-9471237 4.17e-02 4_[+2(8.19e-05)]_[+2(4.62e-05)] chr4:24659797-24659817 9.30e-01 20 chr2:68478672-68478692 5.56e-01 20 chr2:222438517-222438537 5.93e-02 20 chr17:43373578-43373598 5.96e-01 20 chr21:45341556-45341576 1.25e-01 20 chr16:84982981-84983001 1.34e-02 10_[+3(1.35e-05)]_2 chr20:10653404-10653424 1.08e-01 20 chrX:75368770-75368790 2.72e-01 20 chr2:20364517-20364537 2.20e-02 5_[+2(4.62e-05)]_7 chr5:856376-856396 4.11e-02 7_[+2(1.37e-05)]_5 chr22:30838650-30838670 1.38e-01 20 chr11:118272185-11827220 1.07e-01 20 chr17:33776783-33776803 2.74e-01 20 chr14:24505887-24505907 1.26e-02 20 chr8:144544397-144544417 9.10e-01 20 chr15:63893863-63893883 2.66e-02 20 chr22:35807296-35807316 1.27e-02 20 chr3:193788646-193788666 7.18e-01 20 chr1:231473968-231473988 7.56e-02 20 chr14:34675144-34675164 2.97e-03 10_[+5(2.29e-05)]_2 chr15:41780188-41780208 7.57e-02 8_[+2(4.62e-05)]_4 chr20:31181801-31181821 2.23e-02 2_[+3(6.43e-05)]_10 chr6:5261063-5261083 9.61e-01 20 chr10:51565165-51565185 6.70e-03 20 chr15:42900398-42900418 5.88e-01 20 chr12:49351318-49351338 9.97e-01 20 chr14:106260405-10626042 2.80e-01 20 chr11:34937836-34937856 9.52e-01 20 chr22:34313846-34313866 1.78e-04 3_[+2(1.37e-05)]_1_[+4(3.29e-05)] chr7:51085871-51085891 4.30e-02 20 chr1:156094501-156094521 1.57e-01 20 chr9:87324798-87324818 1.65e-02 20 chr3:156361757-156361777 7.84e-01 20 chr20:19291673-19291693 6.68e-01 20 chr17:7760904-7760924 4.68e-01 20 chr9:123605279-123605299 9.56e-01 20 chr7:129792040-129792060 8.44e-02 4_[+2(4.62e-05)]_8 chr11:13484842-13484862 9.42e-01 20 chr2:179278471-179278491 2.17e-02 20 chr21:45379262-45379282 1.56e-03 9_[+1(1.35e-05)]_3 chr6:30919805-30919825 9.61e-01 20 chr4:786753-786773 4.16e-01 20 chr21:44887902-44887922 7.56e-02 7_[+2(4.62e-05)]_5 chr4:113436265-113436285 9.14e-03 20 chr1:232941076-232941096 4.31e-02 9_[+4(1.76e-05)]_3 chr9:137029276-137029296 6.77e-01 20 chr17:53169094-53169114 1.81e-01 20 chr7:2749226-2749246 9.04e-01 20 chr9:91119439-91119459 2.53e-03 1_[+1(4.52e-05)]_11 chr18:32820689-32820709 3.15e-01 20 chr8:144751695-144751715 8.46e-02 20 chr5:150992428-150992448 2.15e-04 8_[+3(1.35e-05)]_4 chr10:75118546-75118566 3.20e-01 20 chr20:1415697-1415717 9.95e-01 20 chr6:26577800-26577820 8.87e-01 20 chr3:137769975-137769995 1.74e-01 20 chr13:38923842-38923862 1.27e-01 20 chr13:114518504-11451852 7.83e-03 20 chr19:41903595-41903615 1.10e-02 20 chr16:90088973-90088993 1.08e-01 20 chr9:130890625-130890645 9.83e-01 20 chr1:170501070-170501090 7.54e-01 20 chr15:64385744-64385764 7.64e-01 20 chr7:91763166-91763186 6.57e-01 20 chr4:185342901-185342921 4.53e-01 20 chr19:1095468-1095488 9.85e-01 20 chr2:26467620-26467640 5.83e-01 20 chr17:4167283-4167303 9.58e-01 20 chr10:12085051-12085071 9.87e-01 20 chr1:150206948-150206968 3.97e-01 20 chr12:64173746-64173766 8.99e-01 20 chr11:34073067-34073087 5.73e-01 20 chr2:96730720-96730740 2.60e-01 20 chr11:13161949-13161969 8.71e-01 20 chr4:190519456-190519476 4.81e-03 3_[+5(1.03e-05)]_9 chr19:41860108-41860128 9.95e-01 20 chr3:48342843-48342863 6.98e-01 20 chr6:34393992-34394012 2.43e-01 20 chr1:87379918-87379938 7.93e-01 20 chr3:58223039-58223059 7.58e-01 20 chr16:87985097-87985117 5.43e-01 20 chr8:11640425-11640445 1.96e-02 4_[+3(2.52e-05)]_8 chr12:27091356-27091376 6.47e-01 20 chr20:29651450-29651470 9.94e-01 20 chr10:94333742-94333762 7.50e-01 20 chr20:31155703-31155723 7.10e-03 20 chr17:53046055-53046075 9.25e-03 [+4(1.76e-05)]_12 chr1:42354664-42354684 1.59e-01 20 chr6:31509997-31510017 5.55e-01 20 chr22:50778772-50778792 1.45e-03 1_[+3(1.35e-05)]_11 chr17:27717312-27717332 9.54e-01 20 chr20:36156424-36156444 4.77e-01 20 chr2:241507476-241507496 8.86e-01 20 chr2:234328474-234328494 4.82e-02 20 chr1:181013644-181013664 8.87e-01 20 chr7:123464642-123464662 6.25e-01 20 chr6:170709244-170709264 3.26e-01 20 chr8:74205984-74206004 9.24e-01 20 chr20:25262460-25262480 9.91e-01 20 chr21:35789971-35789991 9.14e-01 20 chr3:23802753-23802773 4.64e-02 5_[+2(6.25e-05)]_7 chr1:207226346-207226366 2.60e-01 20 chr19:13068132-13068152 9.15e-01 20 chr2:42588491-42588511 6.27e-01 20 chr4:103749180-103749200 1.78e-02 20 chr22:29351969-29351989 3.44e-01 20 chr20:44717949-44717969 7.95e-01 20 chr17:65362731-65362751 9.22e-01 20 chr2:176032894-176032914 8.48e-01 20 chr4:40057331-40057351 4.30e-02 20 chr12:94853405-94853425 2.89e-01 20 chr10:17685995-17686015 5.40e-03 6_[+3(7.42e-05)]_6 chr10:1278709-1278729 1.67e-02 10_[+3(2.52e-05)]_2 chr7:123387812-123387832 9.47e-01 20 chr12:56709827-56709847 9.25e-01 20 chr6:25147545-25147565 7.16e-01 20 chr2:8518693-8518713 3.69e-01 20 chr10:130262801-13026282 1.96e-01 20 chr20:18447920-18447940 8.56e-01 20 chr12:121291756-12129177 5.93e-02 9_[+2(8.19e-05)]_3 chr2:99388663-99388683 4.50e-01 20 chr16:30412052-30412072 9.10e-01 20 chr4:15683243-15683263 3.33e-02 [+4(5.43e-05)]_12 chr15:78151547-78151567 4.77e-02 20 chr3:49131541-49131561 6.37e-03 3_[+4(5.43e-05)]_9 chr5:56469860-56469880 1.32e-02 2_[+4(1.76e-05)]_10 chr1:101406875-101406895 8.15e-01 20 chr17:25790546-25790566 4.98e-01 20 chr1:62902572-62902592 8.12e-01 20 chr9:135545698-135545718 2.23e-01 20 chr6:44355274-44355294 8.14e-01 20 chr4:144434626-144434646 4.10e-01 20 chr21:11130258-11130278 7.62e-01 20 chr16:30056812-30056832 1.30e-03 1_[+1(4.52e-05)]_11 chr19:10542101-10542121 2.19e-01 20 chr5:5422605-5422625 8.97e-01 20 chr15:51369394-51369414 9.42e-01 20 chr4:128703669-128703689 2.35e-01 20 chr3:118529691-118529711 8.32e-01 20 chr17:49198458-49198478 7.94e-01 20 chr11:60104736-60104756 7.14e-01 20 chr2:202507603-202507623 1.97e-01 20 chr14:71109648-71109668 5.77e-01 20 chr17:55362768-55362788 7.84e-01 20 chr1:224567891-224567911 3.20e-03 6_[+1(1.35e-05)]_6 chr1:76251787-76251807 7.83e-01 20 chr2:55459664-55459684 9.79e-01 20 chr9:123698434-123698454 7.40e-01 20 chr9:95895906-95895926 7.45e-01 20 chr14:58666715-58666735 3.73e-02 2_[+5(2.29e-05)]_10 chr17:4843553-4843573 2.50e-02 [+4(1.76e-05)]_12 chr21:45378430-45378450 4.34e-03 [+3(1.35e-05)]_12 chr6:170707912-170707932 6.32e-01 20 chr12:31886216-31886236 4.30e-01 20 chr8:22576943-22576963 9.43e-01 20 chr1:31971734-31971754 2.37e-02 20 chr11:121163212-12116323 3.46e-01 20 chr1:40242124-40242144 2.74e-01 20 chr1:17054998-17055018 9.99e-01 20 chr21:35357577-35357597 1.95e-01 20 chr5:179105411-179105431 4.87e-01 20 chr17:79399550-79399570 2.49e-02 4_[+1(2.94e-05)]_8 chr9:101984400-101984420 1.12e-01 20 chr15:51914357-51914377 9.95e-01 20 chr17:45382709-45382729 1.41e-03 20 chr17:39822168-39822188 6.77e-01 20 chr3:107580889-107580909 7.83e-03 12_[+4(3.29e-05)] chr2:95787625-95787645 9.90e-01 20 chr7:69066519-69066539 3.02e-02 [+1(2.94e-05)]_12 chr1:231664186-231664206 4.08e-01 20 chr19:12896100-12896120 3.31e-03 3_[+5(1.03e-05)]_9 chr2:231921428-231921448 1.15e-01 20 chr6:83902905-83902925 4.62e-01 20 chr11:120215228-12021524 2.73e-02 20 chr13:30920762-30920782 3.12e-01 20 chr15:75287761-75287781 5.31e-01 20 chr6:31620613-31620633 6.61e-01 20 chr4:26987609-26987629 5.78e-03 7_[+1(5.90e-05)]_5 chr1:26437683-26437703 4.51e-01 20 chr3:53231240-53231260 1.52e-02 11_[+4(3.29e-05)]_1 chr9:98637887-98637907 8.48e-01 20 chr1:24306888-24306908 6.30e-01 20 chr15:78730466-78730486 6.51e-02 20 chr12:69139677-69139697 6.66e-01 20 chr3:72226960-72226980 5.15e-01 20 chr5:169010737-169010757 8.40e-02 20 chr22:41252855-41252875 8.84e-01 20 chr12:57941003-57941023 5.38e-01 20 chr19:35788327-35788347 2.92e-01 20 chr8:42249120-42249140 4.32e-01 20 chrX:38782932-38782952 2.89e-01 20 chr15:22833394-22833414 6.06e-01 20 chr8:38759369-38759389 8.52e-01 20 chr1:151736044-151736064 7.97e-01 20 chr2:219536904-219536924 3.29e-02 20 chr6:137486661-137486681 7.46e-02 20 chr17:70419410-70419430 7.21e-01 20 chr10:76970419-76970439 6.19e-01 20 chr17:37607552-37607572 9.49e-01 20 chr17:73201647-73201667 9.99e-01 20 chr12:29534165-29534185 9.43e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n09.farnam.hpc.yale.internal ********************************************************************************