******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/IRF3.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr19:40728056-40728076 1.0000 20 chr3:114866199-114866219 1.0000 20 chr4:175204421-175204441 1.0000 20 chr20:17662997-17663017 1.0000 20 chr14:94492621-94492641 1.0000 20 chr15:40401262-40401282 1.0000 20 chr19:4342891-4342911 1.0000 20 chr19:2945030-2945050 1.0000 20 chr19:33166139-33166159 1.0000 20 chr17:47866564-47866584 1.0000 20 chr13:20532749-20532769 1.0000 20 chr1:25757249-25757269 1.0000 20 chr6:80247197-80247217 1.0000 20 chr5:32313309-32313329 1.0000 20 chr6:15246100-15246120 1.0000 20 chr12:14927213-14927233 1.0000 20 chr11:13299090-13299110 1.0000 20 chr6:26044086-26044106 1.0000 20 chr19:1041122-1041142 1.0000 20 chr20:40247108-40247128 1.0000 20 chr19:2841399-2841419 1.0000 20 chr1:150669808-150669828 1.0000 20 chr3:100211351-100211371 1.0000 20 chr2:71454301-71454321 1.0000 20 chr10:102790946-10279096 1.0000 20 chr16:4852960-4852980 1.0000 20 chr9:135905973-135905993 1.0000 20 chrX:49125717-49125737 1.0000 20 chr3:149530950-149530970 1.0000 20 chr1:10270452-10270472 1.0000 20 chr19:13906073-13906093 1.0000 20 chr22:20004445-20004465 1.0000 20 chr16:58663859-58663879 1.0000 20 chr19:6372644-6372664 1.0000 20 chr19:45873928-45873948 1.0000 20 chr17:79196842-79196862 1.0000 20 chr3:107241741-107241761 1.0000 20 chr15:64673771-64673791 1.0000 20 chr12:6960504-6960524 1.0000 20 chr12:109535800-10953582 1.0000 20 chr6:159527959-159527979 1.0000 20 chr19:37808622-37808642 1.0000 20 chr3:126423021-126423041 1.0000 20 chr1:227127848-227127868 1.0000 20 chr8:145159277-145159297 1.0000 20 chr19:54641297-54641317 1.0000 20 chr13:26796027-26796047 1.0000 20 chr1:38397571-38397591 1.0000 20 chr14:23755455-23755475 1.0000 20 chr14:78083256-78083276 1.0000 20 chr12:53473246-53473266 1.0000 20 chr19:17420273-17420293 1.0000 20 chr9:37465727-37465747 1.0000 20 chr22:35696184-35696204 1.0000 20 chr19:41082695-41082715 1.0000 20 chr19:42580192-42580212 1.0000 20 chr15:83478279-83478299 1.0000 20 chr4:48782453-48782473 1.0000 20 chr1:6845249-6845269 1.0000 20 chr2:65283399-65283419 1.0000 20 chr19:46148958-46148978 1.0000 20 chr4:775664-775684 1.0000 20 chr19:14228682-14228702 1.0000 20 chr17:80656657-80656677 1.0000 20 chr1:28562541-28562561 1.0000 20 chr17:74667918-74667938 1.0000 20 chr22:37582489-37582509 1.0000 20 chr19:1133737-1133757 1.0000 20 chr12:123868607-12386862 1.0000 20 chr16:2264930-2264950 1.0000 20 chr3:119813823-119813843 1.0000 20 chr14:68286432-68286452 1.0000 20 chr16:30621750-30621770 1.0000 20 chr1:150602209-150602229 1.0000 20 chr15:90895436-90895456 1.0000 20 chr22:38054430-38054450 1.0000 20 chr1:150601690-150601710 1.0000 20 chr11:75526159-75526179 1.0000 20 chr14:54863582-54863602 1.0000 20 chr13:20437888-20437908 1.0000 20 chr7:75947425-75947445 1.0000 20 chr5:96144109-96144129 1.0000 20 chr19:8478115-8478135 1.0000 20 chr5:145583074-145583094 1.0000 20 chr19:56159389-56159409 1.0000 20 chrX:47415621-47415641 1.0000 20 chr17:38574306-38574326 1.0000 20 chr19:46498634-46498654 1.0000 20 chr2:232646058-232646078 1.0000 20 chr7:23053792-23053812 1.0000 20 chr22:21996486-21996506 1.0000 20 chr16:67217599-67217619 1.0000 20 chr19:18133139-18133159 1.0000 20 chr9:35072761-35072781 1.0000 20 chr13:107188047-10718806 1.0000 20 chr17:8534278-8534298 1.0000 20 chr10:101380328-10138034 1.0000 20 chrX:46988624-46988644 1.0000 20 chr19:36193371-36193391 1.0000 20 chr4:52709151-52709171 1.0000 20 chr17:73452616-73452636 1.0000 20 chr17:39943156-39943176 1.0000 20 chr1:85527933-85527953 1.0000 20 chr15:43213101-43213121 1.0000 20 chr19:18315122-18315142 1.0000 20 chr2:44395634-44395654 1.0000 20 chr19:19249333-19249353 1.0000 20 chr16:22386010-22386030 1.0000 20 chr8:25316031-25316051 1.0000 20 chr3:185826982-185827002 1.0000 20 chr10:58121093-58121113 1.0000 20 chr11:560873-560893 1.0000 20 chr14:58765099-58765119 1.0000 20 chrX:47221708-47221728 1.0000 20 chr10:101190529-10119054 1.0000 20 chr17:27139555-27139575 1.0000 20 chr2:73460474-73460494 1.0000 20 chr15:69113304-69113324 1.0000 20 chr6:32146041-32146061 1.0000 20 chr19:58892674-58892694 1.0000 20 chr22:37172315-37172335 1.0000 20 chrX:1780558-1780578 1.0000 20 chr16:1728200-1728220 1.0000 20 chr19:7894865-7894885 1.0000 20 chr15:89631487-89631507 1.0000 20 chr11:107798923-10779894 1.0000 20 chr8:144450920-144450940 1.0000 20 chr9:80911959-80911979 1.0000 20 chr5:43313860-43313880 1.0000 20 chr1:151763147-151763167 1.0000 20 chr19:4472104-4472124 1.0000 20 chr20:44441153-44441173 1.0000 20 chr16:84538340-84538360 1.0000 20 chr9:86595195-86595215 1.0000 20 chr9:139780785-139780805 1.0000 20 chr5:31532304-31532324 1.0000 20 chr13:29293185-29293205 1.0000 20 chr1:151689434-151689454 1.0000 20 chr15:99395688-99395708 1.0000 20 chr12:56211748-56211768 1.0000 20 chr12:6961131-6961151 1.0000 20 chr1:153895583-153895603 1.0000 20 chr22:42342785-42342805 1.0000 20 chr21:44772640-44772660 1.0000 20 chr1:55352986-55353006 1.0000 20 chr11:34460419-34460439 1.0000 20 chr17:58755143-58755163 1.0000 20 chr7:150076307-150076327 1.0000 20 chr14:23938627-23938647 1.0000 20 chr4:166248708-166248728 1.0000 20 chr9:131940646-131940666 1.0000 20 chr16:3054022-3054042 1.0000 20 chr1:36851678-36851698 1.0000 20 chr3:127309624-127309644 1.0000 20 chr17:80416443-80416463 1.0000 20 chr7:100184181-100184201 1.0000 20 chr16:70323490-70323510 1.0000 20 chr10:99052459-99052479 1.0000 20 chr1:201123729-201123749 1.0000 20 chr7:154720093-154720113 1.0000 20 chr19:11457082-11457102 1.0000 20 chr7:8008308-8008328 1.0000 20 chr9:34989566-34989586 1.0000 20 chr12:54753070-54753090 1.0000 20 chr3:50605219-50605239 1.0000 20 chr14:64108708-64108728 1.0000 20 chr1:167691143-167691163 1.0000 20 chr12:49504715-49504735 1.0000 20 chr11:67275775-67275795 1.0000 20 chr11:134093915-13409393 1.0000 20 chr13:20207745-20207765 1.0000 20 chr10:75255867-75255887 1.0000 20 chr6:31126242-31126262 1.0000 20 chr5:159546692-159546712 1.0000 20 chr19:50372960-50372980 1.0000 20 chr2:136288897-136288917 1.0000 20 chr17:4870692-4870712 1.0000 20 chr9:130159187-130159207 1.0000 20 chrX:80377264-80377284 1.0000 20 chr4:468054-468074 1.0000 20 chr6:82957537-82957557 1.0000 20 chr19:47551955-47551975 1.0000 20 chr22:40440700-40440720 1.0000 20 chr16:103707-103727 1.0000 20 chrX:154444601-154444621 1.0000 20 chr3:152879115-152879135 1.0000 20 chr5:137549082-137549102 1.0000 20 chr19:42901182-42901202 1.0000 20 chr2:27008727-27008747 1.0000 20 chr1:43312178-43312198 1.0000 20 chr5:98109204-98109224 1.0000 20 chr14:91527392-91527412 1.0000 20 chr8:71314422-71314442 1.0000 20 chr19:50096790-50096810 1.0000 20 chr19:19496461-19496481 1.0000 20 chr11:62599250-62599270 1.0000 20 chr10:127586028-12758604 1.0000 20 chr19:36248913-36248933 1.0000 20 chr6:112194719-112194739 1.0000 20 chr19:18654426-18654446 1.0000 20 chr22:29999325-29999345 1.0000 20 chr19:14530253-14530273 1.0000 20 chr17:46125570-46125590 1.0000 20 chr1:197115859-197115879 1.0000 20 chr19:4968843-4968863 1.0000 20 chr15:90118611-90118631 1.0000 20 chr6:153304256-153304276 1.0000 20 chr13:103451405-10345142 1.0000 20 chr19:18303760-18303780 1.0000 20 chr11:65601317-65601337 1.0000 20 chr5:112312351-112312371 1.0000 20 chr15:43785430-43785450 1.0000 20 chr19:2900769-2900789 1.0000 20 chr1:153700358-153700378 1.0000 20 chr22:40440269-40440289 1.0000 20 chr3:88108237-88108257 1.0000 20 chr3:179280648-179280668 1.0000 20 chr2:20251506-20251526 1.0000 20 chr15:93425689-93425709 1.0000 20 chr4:149363771-149363791 1.0000 20 chr11:46867851-46867871 1.0000 20 chr19:36545749-36545769 1.0000 20 chr7:30066375-30066395 1.0000 20 chr20:32308164-32308184 1.0000 20 chr19:8408202-8408222 1.0000 20 chr19:12405745-12405765 1.0000 20 chr4:184580388-184580408 1.0000 20 chr16:19078820-19078840 1.0000 20 chr16:57570019-57570039 1.0000 20 chr16:57769298-57769318 1.0000 20 chr7:44887952-44887972 1.0000 20 chr2:74685441-74685461 1.0000 20 chr17:79650869-79650889 1.0000 20 chr11:64490735-64490755 1.0000 20 chr17:26368550-26368570 1.0000 20 chr6:26251141-26251161 1.0000 20 chr19:58790202-58790222 1.0000 20 chr9:139743736-139743756 1.0000 20 chr4:89513530-89513550 1.0000 20 chr9:131843184-131843204 1.0000 20 chr10:104261968-10426198 1.0000 20 chr14:73925355-73925375 1.0000 20 chr19:12662430-12662450 1.0000 20 chr11:124981569-12498158 1.0000 20 chr20:44509772-44509792 1.0000 20 chr19:17378023-17378043 1.0000 20 chr4:331471-331491 1.0000 20 chr11:13690145-13690165 1.0000 20 chr7:38217715-38217735 1.0000 20 chr1:20988073-20988093 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_IRF3/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/IRF3.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.211 C 0.288 G 0.293 T 0.208 Background letter frequencies (from file dataset with add-one prior applied): A 0.211 C 0.288 G 0.293 T 0.208 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF YSATTGGY MEME-1 width = 8 sites = 44 llr = 319 E-value = 8.4e-024 ******************************************************************************** -------------------------------------------------------------------------------- Motif YSATTGGY MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::9::::1 pos.-specific C 43:1:::5 probability G 151::aa: matrix T 42:9a::3 bits 2.3 2.0 * 1.8 ***** 1.6 ***** Relative 1.4 ***** Entropy 1.1 ***** (10.5 bits) 0.9 ***** 0.7 ***** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGATTGGC consensus TC T sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YSATTGGY MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr16:57570019-57570039 11 1.38e-05 CGCCGTGCTC TGATTGGC CA chr3:179280648-179280668 11 1.38e-05 AGCCGCATTC TGATTGGC TA chr6:82957537-82957557 3 1.38e-05 GA TGATTGGC TGGTGCCTGC chr21:44772640-44772660 4 1.38e-05 ATC TGATTGGC TGCAGGCAT chr16:1728200-1728220 10 1.38e-05 GCGGAGGGA TGATTGGC GTC chr17:26368550-26368570 11 2.37e-05 ACTCTGCCTT TGATTGGT CT chr16:57769298-57769318 7 2.37e-05 GGACGC TGATTGGT CAATCC chr8:71314422-71314442 5 4.27e-05 CCTT CGATTGGC TCACTGCC chr5:98109204-98109224 8 4.27e-05 GGTCCTG CGATTGGC AGGCT chr11:67275775-67275795 8 4.27e-05 CCGCCGC CGATTGGC CTCCG chr19:8478115-8478135 4 4.27e-05 AGG CGATTGGC GAATGCAGG chr1:227127848-227127868 2 4.27e-05 G CGATTGGC TACGGGCCGG chr13:29293185-29293205 11 5.65e-05 GCCCCAGCGG CGATTGGT CC chr14:23938627-23938647 12 7.98e-05 TGACTGTCTC TTATTGGC T chr17:79650869-79650889 12 9.66e-05 TTCGGACTTC TCATTGGT T chr11:46867851-46867871 4 9.66e-05 TCT TTATTGGT CCTCGACGG chr22:38054430-38054450 9 9.66e-05 GTAGATTC TTATTGGT TAAG chr4:175204421-175204441 4 9.66e-05 CTG TCATTGGT CGCAAACTC chr4:89513530-89513550 3 1.29e-04 CG CCATTGGC GCGGGCCCAT chr1:153700358-153700378 13 1.29e-04 TCCCTCAACA CCATTGGC chr19:47551955-47551975 4 1.29e-04 TAC CCATTGGC TATGCGCTC chr7:30066375-30066395 6 1.52e-04 ATTGG CTATTGGT GCTGTCC chr17:58755143-58755163 11 1.82e-04 TTTGCTTCTG GGATTGGC TA chr14:64108708-64108728 13 2.10e-04 TGCTAGCTTC CGATTGGA chr10:99052459-99052479 13 2.10e-04 CTCTTCCGTG CGATTGGA chr1:36851678-36851698 1 2.10e-04 . GGATTGGT TCAGGGTGGG chr16:30621750-30621770 11 2.27e-04 ATACGCGCGT TCATTGGA CG chr4:52709151-52709171 6 2.59e-04 CAATC GTATTGGC CAGTGGG chr14:23755455-23755475 13 2.59e-04 CTGAAGTCAG GTATTGGC chr5:96144109-96144129 4 3.07e-04 CGC CCATTGGA CTCGCTGGG chr2:65283399-65283419 9 3.07e-04 GCGTCCAC GTATTGGT GGAG chr19:46148958-46148978 13 3.68e-04 GGATGCAGAG GGATTGGA chr22:20004445-20004465 1 4.13e-04 . CGATTGGG CGGATGCGCG chr9:139780785-139780805 6 4.66e-04 CTCGC TGGTTGGC TCCGGCG chr17:74667918-74667938 9 4.66e-04 TTCGCGGC AGATTGGC AGGT chr7:38217715-38217735 1 5.69e-04 . TTACTGGT CAGTAGAAGA chr19:19496461-19496481 1 5.69e-04 . TCACTGGT CGTCATGCGC chr5:145583074-145583094 11 5.69e-04 CCCCTCTCTC TTACTGGT TC chr15:43213101-43213121 13 6.19e-04 CTCGCAGCGT CGGTTGGC chr17:46125570-46125590 12 7.16e-04 GTACACTCAG CCATTGGG C chr11:134093915-13409393 10 7.16e-04 CAGAATTTC CCACTGGC CAA chrX:47221708-47221728 13 7.48e-04 CCCGATGCAG CCACTGGT chr19:18654426-18654446 12 9.63e-04 ACTGCCGCAC CCGTTGGC T chr15:43785430-43785450 1 1.04e-03 . TGATAGGT AGCTGCGGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YSATTGGY MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:57570019-57570039 1.4e-05 10_[+1]_2 chr3:179280648-179280668 1.4e-05 10_[+1]_2 chr6:82957537-82957557 1.4e-05 2_[+1]_10 chr21:44772640-44772660 1.4e-05 3_[+1]_9 chr16:1728200-1728220 1.4e-05 9_[+1]_3 chr17:26368550-26368570 2.4e-05 10_[+1]_2 chr16:57769298-57769318 2.4e-05 6_[+1]_6 chr8:71314422-71314442 4.3e-05 4_[+1]_8 chr5:98109204-98109224 4.3e-05 7_[+1]_5 chr11:67275775-67275795 4.3e-05 7_[+1]_5 chr19:8478115-8478135 4.3e-05 3_[+1]_9 chr1:227127848-227127868 4.3e-05 1_[+1]_11 chr13:29293185-29293205 5.6e-05 10_[+1]_2 chr14:23938627-23938647 8e-05 11_[+1]_1 chr17:79650869-79650889 9.7e-05 11_[+1]_1 chr11:46867851-46867871 9.7e-05 3_[+1]_9 chr22:38054430-38054450 9.7e-05 8_[+1]_4 chr4:175204421-175204441 9.7e-05 3_[+1]_9 chr4:89513530-89513550 0.00013 2_[+1]_10 chr1:153700358-153700378 0.00013 12_[+1] chr19:47551955-47551975 0.00013 3_[+1]_9 chr7:30066375-30066395 0.00015 5_[+1]_7 chr17:58755143-58755163 0.00018 10_[+1]_2 chr14:64108708-64108728 0.00021 12_[+1] chr10:99052459-99052479 0.00021 12_[+1] chr1:36851678-36851698 0.00021 [+1]_12 chr16:30621750-30621770 0.00023 10_[+1]_2 chr4:52709151-52709171 0.00026 5_[+1]_7 chr14:23755455-23755475 0.00026 12_[+1] chr5:96144109-96144129 0.00031 3_[+1]_9 chr2:65283399-65283419 0.00031 8_[+1]_4 chr19:46148958-46148978 0.00037 12_[+1] chr22:20004445-20004465 0.00041 [+1]_12 chr9:139780785-139780805 0.00047 5_[+1]_7 chr17:74667918-74667938 0.00047 8_[+1]_4 chr7:38217715-38217735 0.00057 [+1]_12 chr19:19496461-19496481 0.00057 [+1]_12 chr5:145583074-145583094 0.00057 10_[+1]_2 chr15:43213101-43213121 0.00062 12_[+1] chr17:46125570-46125590 0.00072 11_[+1]_1 chr11:134093915-13409393 0.00072 9_[+1]_3 chrX:47221708-47221728 0.00075 12_[+1] chr19:18654426-18654446 0.00096 11_[+1]_1 chr15:43785430-43785450 0.001 [+1]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YSATTGGY MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YSATTGGY width=8 seqs=44 chr16:57570019-57570039 ( 11) TGATTGGC 1 chr3:179280648-179280668 ( 11) TGATTGGC 1 chr6:82957537-82957557 ( 3) TGATTGGC 1 chr21:44772640-44772660 ( 4) TGATTGGC 1 chr16:1728200-1728220 ( 10) TGATTGGC 1 chr17:26368550-26368570 ( 11) TGATTGGT 1 chr16:57769298-57769318 ( 7) TGATTGGT 1 chr8:71314422-71314442 ( 5) CGATTGGC 1 chr5:98109204-98109224 ( 8) CGATTGGC 1 chr11:67275775-67275795 ( 8) CGATTGGC 1 chr19:8478115-8478135 ( 4) CGATTGGC 1 chr1:227127848-227127868 ( 2) CGATTGGC 1 chr13:29293185-29293205 ( 11) CGATTGGT 1 chr14:23938627-23938647 ( 12) TTATTGGC 1 chr17:79650869-79650889 ( 12) TCATTGGT 1 chr11:46867851-46867871 ( 4) TTATTGGT 1 chr22:38054430-38054450 ( 9) TTATTGGT 1 chr4:175204421-175204441 ( 4) TCATTGGT 1 chr4:89513530-89513550 ( 3) CCATTGGC 1 chr1:153700358-153700378 ( 13) CCATTGGC 1 chr19:47551955-47551975 ( 4) CCATTGGC 1 chr7:30066375-30066395 ( 6) CTATTGGT 1 chr17:58755143-58755163 ( 11) GGATTGGC 1 chr14:64108708-64108728 ( 13) CGATTGGA 1 chr10:99052459-99052479 ( 13) CGATTGGA 1 chr1:36851678-36851698 ( 1) GGATTGGT 1 chr16:30621750-30621770 ( 11) TCATTGGA 1 chr4:52709151-52709171 ( 6) GTATTGGC 1 chr14:23755455-23755475 ( 13) GTATTGGC 1 chr5:96144109-96144129 ( 4) CCATTGGA 1 chr2:65283399-65283419 ( 9) GTATTGGT 1 chr19:46148958-46148978 ( 13) GGATTGGA 1 chr22:20004445-20004465 ( 1) CGATTGGG 1 chr9:139780785-139780805 ( 6) TGGTTGGC 1 chr17:74667918-74667938 ( 9) AGATTGGC 1 chr7:38217715-38217735 ( 1) TTACTGGT 1 chr19:19496461-19496481 ( 1) TCACTGGT 1 chr5:145583074-145583094 ( 11) TTACTGGT 1 chr15:43213101-43213121 ( 13) CGGTTGGC 1 chr17:46125570-46125590 ( 12) CCATTGGG 1 chr11:134093915-13409393 ( 10) CCACTGGC 1 chrX:47221708-47221728 ( 13) CCACTGGT 1 chr19:18654426-18654446 ( 12) CCGTTGGC 1 chr15:43785430-43785450 ( 1) TGATAGGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YSATTGGY MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.22364 E= 8.4e-024 -321 58 -110 98 -1210 -8 83 -2 215 -1210 -210 -1210 -1210 -134 -1210 209 -321 -1210 -1210 223 -1210 -1210 177 -1210 -1210 -1210 177 -1210 -89 79 -269 71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YSATTGGY MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 44 E= 8.4e-024 0.022727 0.431818 0.136364 0.409091 0.000000 0.272727 0.522727 0.204545 0.931818 0.000000 0.068182 0.000000 0.000000 0.113636 0.000000 0.886364 0.022727 0.000000 0.000000 0.977273 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.113636 0.500000 0.045455 0.340909 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YSATTGGY MEME-1 regular expression -------------------------------------------------------------------------------- [CT][GCT]ATTGG[CT] -------------------------------------------------------------------------------- Time 3.13 secs. ******************************************************************************** ******************************************************************************** MOTIF YARCCAAT MEME-2 width = 8 sites = 38 llr = 279 E-value = 1.4e-017 ******************************************************************************** -------------------------------------------------------------------------------- Motif YARCCAAT MEME-2 Description -------------------------------------------------------------------------------- Simplified A 163::a9: pos.-specific C 611aa::: probability G 125:::1: matrix T 312::::a bits 2.3 2.0 * * 1.8 *** * 1.6 ***** Relative 1.4 ***** Entropy 1.1 ***** (10.6 bits) 0.9 ***** 0.7 ***** 0.5 ** ***** 0.2 ******** 0.0 -------- Multilevel CAGCCAAT consensus TGA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YARCCAAT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:64490735-64490755 10 1.37e-05 CGAGCAGCG CAGCCAAT GCA chr19:36248913-36248933 11 1.37e-05 GCAGTCGTCC CAGCCAAT CC chr7:150076307-150076327 11 1.37e-05 CTGAGCGGCG CAGCCAAT GG chr6:32146041-32146061 12 1.37e-05 TAGACCGTAT CAGCCAAT A chr1:43312178-43312198 10 2.36e-05 CAGTCATGG TAGCCAAT GGA chr10:101190529-10119054 5 2.36e-05 CTAT TAGCCAAT CCAAGAAA chr19:18315122-18315142 11 2.36e-05 ACGGGCGAAG TAGCCAAT CA chr12:56211748-56211768 13 3.34e-05 TACAGACCAC CAACCAAT chr16:19078820-19078840 10 4.05e-05 TGTCGTATC TAACCAAT CTA chr13:26796027-26796047 13 4.05e-05 AGAAGGCAGT TAACCAAT chr19:11457082-11457102 2 5.72e-05 T TATCCAAT TACGCCGCGG chr3:126423021-126423041 9 7.62e-05 TCTGGCGT CGGCCAAT AGGA chr15:90895436-90895456 13 1.00e-04 GGAAACTGAA AAGCCAAT chr5:43313860-43313880 6 1.27e-04 TTCTC CGACCAAT TGGGACT chr19:19249333-19249353 11 1.27e-04 GCATCCCGTC CGACCAAT CA chr22:37582489-37582509 4 1.27e-04 GAC CTGCCAAT CAGATGCCA chr19:40728056-40728076 4 1.27e-04 AAG CGACCAAT CAAAAGCGA chr19:54641297-54641317 9 1.41e-04 GGAGCGAT CACCCAAT CCGC chr16:58663859-58663879 2 2.05e-04 C TACCCAAT CACCGACAGG chr11:13690145-13690165 2 2.38e-04 C CAGCCAGT CACGTCGCGA chr19:36545749-36545769 10 2.38e-04 GGCCCGTCG CGTCCAAT AGG chr22:40440700-40440720 11 2.38e-04 GCACAAAAGC CAGCCAGT GA chr2:232646058-232646078 12 2.38e-04 GCATCTCAAC CAGCCAGT A chr22:35696184-35696204 3 2.38e-04 GA CAGCCAGT AGGTAAGGAG chr22:42342785-42342805 7 2.65e-04 GGGAAC TCGCCAAT CAGAAG chr13:20532749-20532769 8 2.65e-04 GCCGTCG GAGCCAAT GGGCG chr19:18303760-18303780 12 2.86e-04 GAGTGCAACG TTACCAAT C chr7:154720093-154720113 10 3.16e-04 CAAGTAAAA TGTCCaat gag chr1:150669808-150669828 9 3.16e-04 AGCTGGTC AATCCAAT GAAG chr19:2841399-2841419 10 3.16e-04 TGGCAGCAC TGTCCAAT CAG chr3:88108237-88108257 1 3.59e-04 . TCACCAAT AGTAGTGGAA chr19:4968843-4968863 10 3.89e-04 CGTGCGCCC CCTCCAAT GAG chr5:31532304-31532324 11 4.85e-04 ATGGACGTCT AGACCAAT CG chr3:127309624-127309644 11 5.61e-04 TAACCTCCAG CAGCCTAT AG chr19:58892674-58892694 2 5.61e-04 T CTCCCAAT CTGATTTCTA chr19:8408202-8408222 3 7.00e-04 GC CAGCCAAC CAGCACCCGA chr17:39943156-39943176 11 7.48e-04 GCCCCGGGGA CTGCCAGT CG chr6:153304256-153304276 11 1.18e-03 TTGCATGCGC GCACCAAT AG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YARCCAAT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:64490735-64490755 1.4e-05 9_[+2]_3 chr19:36248913-36248933 1.4e-05 10_[+2]_2 chr7:150076307-150076327 1.4e-05 10_[+2]_2 chr6:32146041-32146061 1.4e-05 11_[+2]_1 chr1:43312178-43312198 2.4e-05 9_[+2]_3 chr10:101190529-10119054 2.4e-05 4_[+2]_8 chr19:18315122-18315142 2.4e-05 10_[+2]_2 chr12:56211748-56211768 3.3e-05 12_[+2] chr16:19078820-19078840 4.1e-05 9_[+2]_3 chr13:26796027-26796047 4.1e-05 12_[+2] chr19:11457082-11457102 5.7e-05 1_[+2]_11 chr3:126423021-126423041 7.6e-05 8_[+2]_4 chr15:90895436-90895456 0.0001 12_[+2] chr5:43313860-43313880 0.00013 5_[+2]_7 chr19:19249333-19249353 0.00013 10_[+2]_2 chr22:37582489-37582509 0.00013 3_[+2]_9 chr19:40728056-40728076 0.00013 3_[+2]_9 chr19:54641297-54641317 0.00014 8_[+2]_4 chr16:58663859-58663879 0.00021 1_[+2]_11 chr11:13690145-13690165 0.00024 1_[+2]_11 chr19:36545749-36545769 0.00024 9_[+2]_3 chr22:40440700-40440720 0.00024 10_[+2]_2 chr2:232646058-232646078 0.00024 11_[+2]_1 chr22:35696184-35696204 0.00024 2_[+2]_10 chr22:42342785-42342805 0.00027 6_[+2]_6 chr13:20532749-20532769 0.00027 7_[+2]_5 chr19:18303760-18303780 0.00029 11_[+2]_1 chr7:154720093-154720113 0.00032 9_[+2]_3 chr1:150669808-150669828 0.00032 8_[+2]_4 chr19:2841399-2841419 0.00032 9_[+2]_3 chr3:88108237-88108257 0.00036 [+2]_12 chr19:4968843-4968863 0.00039 9_[+2]_3 chr5:31532304-31532324 0.00048 10_[+2]_2 chr3:127309624-127309644 0.00056 10_[+2]_2 chr19:58892674-58892694 0.00056 1_[+2]_11 chr19:8408202-8408222 0.0007 2_[+2]_10 chr17:39943156-39943176 0.00075 10_[+2]_2 chr6:153304256-153304276 0.0012 10_[+2]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YARCCAAT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YARCCAAT width=8 seqs=38 chr11:64490735-64490755 ( 10) CAGCCAAT 1 chr19:36248913-36248933 ( 11) CAGCCAAT 1 chr7:150076307-150076327 ( 11) CAGCCAAT 1 chr6:32146041-32146061 ( 12) CAGCCAAT 1 chr1:43312178-43312198 ( 10) TAGCCAAT 1 chr10:101190529-10119054 ( 5) TAGCCAAT 1 chr19:18315122-18315142 ( 11) TAGCCAAT 1 chr12:56211748-56211768 ( 13) CAACCAAT 1 chr16:19078820-19078840 ( 10) TAACCAAT 1 chr13:26796027-26796047 ( 13) TAACCAAT 1 chr19:11457082-11457102 ( 2) TATCCAAT 1 chr3:126423021-126423041 ( 9) CGGCCAAT 1 chr15:90895436-90895456 ( 13) AAGCCAAT 1 chr5:43313860-43313880 ( 6) CGACCAAT 1 chr19:19249333-19249353 ( 11) CGACCAAT 1 chr22:37582489-37582509 ( 4) CTGCCAAT 1 chr19:40728056-40728076 ( 4) CGACCAAT 1 chr19:54641297-54641317 ( 9) CACCCAAT 1 chr16:58663859-58663879 ( 2) TACCCAAT 1 chr11:13690145-13690165 ( 2) CAGCCAGT 1 chr19:36545749-36545769 ( 10) CGTCCAAT 1 chr22:40440700-40440720 ( 11) CAGCCAGT 1 chr2:232646058-232646078 ( 12) CAGCCAGT 1 chr22:35696184-35696204 ( 3) CAGCCAGT 1 chr22:42342785-42342805 ( 7) TCGCCAAT 1 chr13:20532749-20532769 ( 8) GAGCCAAT 1 chr19:18303760-18303780 ( 12) TTACCAAT 1 chr7:154720093-154720113 ( 10) TGTCCAAT 1 chr1:150669808-150669828 ( 9) AATCCAAT 1 chr19:2841399-2841419 ( 10) TGTCCAAT 1 chr3:88108237-88108257 ( 1) TCACCAAT 1 chr19:4968843-4968863 ( 10) CCTCCAAT 1 chr5:31532304-31532324 ( 11) AGACCAAT 1 chr3:127309624-127309644 ( 11) CAGCCTAT 1 chr19:58892674-58892694 ( 2) CTCCCAAT 1 chr19:8408202-8408222 ( 3) CAGCCAAC 1 chr17:39943156-39943176 ( 11) CTGCCAGT 1 chr6:153304256-153304276 ( 11) GCACCAAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YARCCAAT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.85264 E= 1.4e-017 -142 94 -248 60 146 -145 -48 -98 32 -187 77 -40 -1189 179 -1189 -1189 -1189 179 -1189 -1189 221 -1189 -1189 -298 204 -1189 -116 -1189 -1189 -345 -1189 223 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YARCCAAT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 38 E= 1.4e-017 0.078947 0.552632 0.052632 0.315789 0.578947 0.105263 0.210526 0.105263 0.263158 0.078947 0.500000 0.157895 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.973684 0.000000 0.000000 0.026316 0.868421 0.000000 0.131579 0.000000 0.000000 0.026316 0.000000 0.973684 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YARCCAAT MEME-2 regular expression -------------------------------------------------------------------------------- [CT][AG][GA]CCAAT -------------------------------------------------------------------------------- Time 3.90 secs. ******************************************************************************** ******************************************************************************** MOTIF YTKGCTYC MEME-3 width = 8 sites = 8 llr = 72 E-value = 1.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif YTKGCTYC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 4:::a:5a probability G ::6a:::: matrix T 6a4::a5: bits 2.3 * * 2.0 * * 1.8 * *** * 1.6 * *** * Relative 1.4 * *** * Entropy 1.1 ** ***** (13.1 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTGGCTCC consensus C T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTKGCTYC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:80247197-80247217 1 1.33e-05 . TTGGCTTC TGTCTCCAGA chr3:114866199-114866219 7 1.33e-05 CCAATC TTGGCTTC AGTGAG chr17:58755143-58755163 1 2.28e-05 . TTTGCTTC TGGGATTGGC chr12:49504715-49504735 3 4.12e-05 CA TTGGCTCC TGGAGAGCTG chr13:20437888-20437908 3 4.12e-05 CA TTGGCTCC GACGGCCGTC chr11:107798923-10779894 2 8.59e-05 C CTTGCTTC ATTTTCCTTG chr9:35072761-35072781 5 1.11e-04 CGGC CTGGCTCC CGCCTCAG chr5:137549082-137549102 9 1.30e-04 GGCCGGCT CTTGCTCC GGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTKGCTYC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:80247197-80247217 1.3e-05 [+3]_12 chr3:114866199-114866219 1.3e-05 6_[+3]_6 chr17:58755143-58755163 2.3e-05 [+3]_12 chr12:49504715-49504735 4.1e-05 2_[+3]_10 chr13:20437888-20437908 4.1e-05 2_[+3]_10 chr11:107798923-10779894 8.6e-05 1_[+3]_11 chr9:35072761-35072781 0.00011 4_[+3]_8 chr5:137549082-137549102 0.00013 8_[+3]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTKGCTYC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YTKGCTYC width=8 seqs=8 chr6:80247197-80247217 ( 1) TTGGCTTC 1 chr3:114866199-114866219 ( 7) TTGGCTTC 1 chr17:58755143-58755163 ( 1) TTTGCTTC 1 chr12:49504715-49504735 ( 3) TTGGCTCC 1 chr13:20437888-20437908 ( 3) TTGGCTCC 1 chr11:107798923-10779894 ( 2) CTTGCTTC 1 chr9:35072761-35072781 ( 5) CTGGCTCC 1 chr5:137549082-137549102 ( 9) CTTGCTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTKGCTYC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.66267 E= 1.9e+003 -965 38 -965 159 -965 -965 -965 227 -965 -965 109 85 -965 -965 177 -965 -965 179 -965 -965 -965 -965 -965 227 -965 79 -965 127 -965 179 -965 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTKGCTYC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 1.9e+003 0.000000 0.375000 0.000000 0.625000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.625000 0.375000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.000000 0.500000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTKGCTYC MEME-3 regular expression -------------------------------------------------------------------------------- [TC]T[GT]GCT[CT]C -------------------------------------------------------------------------------- Time 4.81 secs. ******************************************************************************** ******************************************************************************** MOTIF TTCTKATT MEME-4 width = 8 sites = 2 llr = 23 E-value = 3.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTCTKATT MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::a:: pos.-specific C ::a::::: probability G ::::5::: matrix T aa:a5:aa bits 2.3 ** * *** 2.0 ** * *** 1.8 **** *** 1.6 **** *** Relative 1.4 **** *** Entropy 1.1 **** *** (16.4 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTCTGATT consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCTKATT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr4:149363771-149363791 12 4.92e-06 TCAGGCGGGC TTCTTATT G chr2:20251506-20251526 12 1.19e-05 TGGACCGGAC TTCTGATT G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCTKATT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:149363771-149363791 4.9e-06 11_[+4]_1 chr2:20251506-20251526 1.2e-05 11_[+4]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCTKATT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTCTKATT width=8 seqs=2 chr4:149363771-149363791 ( 12) TTCTTATT 1 chr2:20251506-20251526 ( 12) TTCTGATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCTKATT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.6653 E= 3.9e+003 -765 -765 -765 226 -765 -765 -765 226 -765 179 -765 -765 -765 -765 -765 226 -765 -765 77 126 224 -765 -765 -765 -765 -765 -765 226 -765 -765 -765 226 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCTKATT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.9e+003 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.500000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCTKATT MEME-4 regular expression -------------------------------------------------------------------------------- TTCT[GT]ATT -------------------------------------------------------------------------------- Time 5.57 secs. ******************************************************************************** ******************************************************************************** MOTIF TTGGCTAA MEME-5 width = 8 sites = 2 llr = 23 E-value = 9.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTGGCTAA MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::::aa pos.-specific C ::::a::: probability G ::aa:::: matrix T aa:::a:: bits 2.3 ** *** 2.0 ** *** 1.8 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.1 ******** (16.6 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTGGCTAA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGCTAA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:46498634-46498654 5 9.91e-06 TCTT TTGGCTAA TGGAAACT chr19:37808622-37808642 1 9.91e-06 . TTGGCTAA TGTGGAGCGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGCTAA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:46498634-46498654 9.9e-06 4_[+5]_8 chr19:37808622-37808642 9.9e-06 [+5]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGCTAA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTGGCTAA width=8 seqs=2 chr19:46498634-46498654 ( 5) TTGGCTAA 1 chr19:37808622-37808642 ( 1) TTGGCTAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGCTAA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.81663 E= 9.5e+003 -765 -765 -765 226 -765 -765 -765 226 -765 -765 177 -765 -765 -765 177 -765 -765 179 -765 -765 -765 -765 -765 226 224 -765 -765 -765 224 -765 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGCTAA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 9.5e+003 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGCTAA MEME-5 regular expression -------------------------------------------------------------------------------- TTGGCTAA -------------------------------------------------------------------------------- Time 6.47 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:40728056-40728076 1.72e-01 20 chr3:114866199-114866219 1.08e-03 6_[+3(1.33e-05)]_6 chr4:175204421-175204441 3.00e-03 3_[+1(9.66e-05)]_9 chr20:17662997-17663017 1.54e-01 20 chr14:94492621-94492641 2.23e-01 20 chr15:40401262-40401282 9.82e-01 20 chr19:4342891-4342911 2.77e-01 20 chr19:2945030-2945050 8.03e-01 20 chr19:33166139-33166159 9.28e-01 20 chr17:47866564-47866584 1.40e-01 20 chr13:20532749-20532769 7.86e-02 20 chr1:25757249-25757269 2.35e-02 20 chr6:80247197-80247217 3.04e-04 [+3(1.33e-05)]_12 chr5:32313309-32313329 4.96e-01 20 chr6:15246100-15246120 3.01e-01 20 chr12:14927213-14927233 4.83e-01 20 chr11:13299090-13299110 7.38e-01 20 chr6:26044086-26044106 3.82e-02 [+5(8.22e-05)]_12 chr19:1041122-1041142 8.63e-01 20 chr20:40247108-40247128 7.81e-01 20 chr19:2841399-2841419 4.37e-02 20 chr1:150669808-150669828 6.23e-02 20 chr3:100211351-100211371 7.11e-01 20 chr2:71454301-71454321 9.68e-01 20 chr10:102790946-10279096 8.79e-02 20 chr16:4852960-4852980 7.04e-02 20 chr9:135905973-135905993 9.91e-01 20 chrX:49125717-49125737 2.13e-01 20 chr3:149530950-149530970 1.23e-01 20 chr1:10270452-10270472 2.85e-01 20 chr19:13906073-13906093 6.18e-04 6_[+5(8.22e-05)]_6 chr22:20004445-20004465 1.49e-01 20 chr16:58663859-58663879 1.75e-02 20 chr19:6372644-6372664 9.97e-01 20 chr19:45873928-45873948 7.71e-01 20 chr17:79196842-79196862 6.15e-01 20 chr3:107241741-107241761 8.91e-01 20 chr15:64673771-64673791 3.53e-01 20 chr12:6960504-6960524 4.21e-01 20 chr12:109535800-10953582 9.04e-01 20 chr6:159527959-159527979 2.87e-01 20 chr19:37808622-37808642 5.61e-04 [+5(9.91e-06)]_12 chr3:126423021-126423041 6.93e-04 8_[+2(7.62e-05)]_4 chr1:227127848-227127868 1.93e-05 1_[+1(4.27e-05)]_11 chr8:145159277-145159297 9.97e-01 20 chr19:54641297-54641317 1.59e-01 20 chr13:26796027-26796047 2.03e-02 12_[+2(4.05e-05)] chr1:38397571-38397591 2.77e-01 20 chr14:23755455-23755475 1.20e-01 20 chr14:78083256-78083276 1.87e-01 20 chr12:53473246-53473266 4.20e-01 20 chr19:17420273-17420293 9.50e-01 20 chr9:37465727-37465747 1.06e-01 20 chr22:35696184-35696204 4.52e-02 20 chr19:41082695-41082715 8.46e-02 20 chr19:42580192-42580212 9.86e-01 20 chr15:83478279-83478299 4.30e-01 20 chr4:48782453-48782473 5.49e-02 20 chr1:6845249-6845269 9.14e-02 20 chr2:65283399-65283419 2.83e-02 20 chr19:46148958-46148978 2.78e-01 20 chr4:775664-775684 8.15e-01 20 chr19:14228682-14228702 9.71e-01 20 chr17:80656657-80656677 8.52e-01 20 chr1:28562541-28562561 8.25e-01 20 chr17:74667918-74667938 3.96e-02 20 chr22:37582489-37582509 7.73e-02 20 chr19:1133737-1133757 8.71e-01 20 chr12:123868607-12386862 5.01e-01 20 chr16:2264930-2264950 9.01e-01 20 chr3:119813823-119813843 5.32e-01 20 chr14:68286432-68286452 6.00e-01 20 chr16:30621750-30621770 1.23e-01 20 chr1:150602209-150602229 7.18e-01 20 chr15:90895436-90895456 1.21e-01 12_[+2(1.00e-04)] chr22:38054430-38054450 1.89e-07 5_[+4(4.92e-06)]_7 chr1:150601690-150601710 3.08e-01 20 chr11:75526159-75526179 9.76e-01 20 chr14:54863582-54863602 6.94e-01 20 chr13:20437888-20437908 8.12e-03 2_[+3(4.12e-05)]_10 chr7:75947425-75947445 8.26e-01 20 chr5:96144109-96144129 1.66e-02 20 chr19:8478115-8478135 2.01e-04 3_[+1(4.27e-05)]_9 chr5:145583074-145583094 2.19e-02 20 chr19:56159389-56159409 6.81e-01 20 chrX:47415621-47415641 1.30e-01 20 chr17:38574306-38574326 8.23e-01 20 chr19:46498634-46498654 6.30e-05 4_[+5(9.91e-06)]_8 chr2:232646058-232646078 2.07e-01 20 chr7:23053792-23053812 6.46e-01 20 chr22:21996486-21996506 2.26e-01 20 chr16:67217599-67217619 8.38e-01 20 chr19:18133139-18133159 6.75e-01 20 chr9:35072761-35072781 2.04e-02 20 chr13:107188047-10718806 9.85e-01 20 chr17:8534278-8534298 1.38e-01 20 chr10:101380328-10138034 9.87e-01 20 chrX:46988624-46988644 7.22e-01 20 chr19:36193371-36193391 7.62e-01 20 chr4:52709151-52709171 7.44e-05 20 chr17:73452616-73452636 8.06e-01 20 chr17:39943156-39943176 2.15e-01 20 chr1:85527933-85527953 9.21e-01 20 chr15:43213101-43213121 1.90e-01 20 chr19:18315122-18315142 3.13e-02 10_[+2(2.36e-05)]_2 chr2:44395634-44395654 1.33e-02 20 chr19:19249333-19249353 1.42e-01 20 chr16:22386010-22386030 7.36e-01 20 chr8:25316031-25316051 8.31e-01 20 chr3:185826982-185827002 7.37e-01 20 chr10:58121093-58121113 6.65e-01 20 chr11:560873-560893 9.97e-01 20 chr14:58765099-58765119 8.20e-01 20 chrX:47221708-47221728 1.19e-01 20 chr10:101190529-10119054 7.85e-04 4_[+2(2.36e-05)]_8 chr17:27139555-27139575 8.09e-01 20 chr2:73460474-73460494 5.45e-01 20 chr15:69113304-69113324 8.62e-01 20 chr6:32146041-32146061 1.42e-02 11_[+2(1.37e-05)]_1 chr19:58892674-58892694 6.51e-04 20 chr22:37172315-37172335 1.65e-02 20 chrX:1780558-1780578 8.76e-01 20 chr16:1728200-1728220 3.76e-04 9_[+1(1.38e-05)]_3 chr19:7894865-7894885 3.00e-02 20 chr15:89631487-89631507 6.90e-01 20 chr11:107798923-10779894 2.66e-03 1_[+3(8.59e-05)]_11 chr8:144450920-144450940 9.81e-01 20 chr9:80911959-80911979 3.15e-01 20 chr5:43313860-43313880 1.15e-02 20 chr1:151763147-151763167 9.40e-01 20 chr19:4472104-4472124 6.48e-01 20 chr20:44441153-44441173 3.06e-01 20 chr16:84538340-84538360 8.76e-01 20 chr9:86595195-86595215 8.98e-01 20 chr9:139780785-139780805 1.29e-04 8_[+3(4.12e-05)]_4 chr5:31532304-31532324 1.27e-01 20 chr13:29293185-29293205 6.96e-03 10_[+1(5.65e-05)]_2 chr1:151689434-151689454 9.30e-01 20 chr15:99395688-99395708 9.78e-01 20 chr12:56211748-56211768 5.04e-02 12_[+2(3.34e-05)] chr12:6961131-6961151 7.55e-02 20 chr1:153895583-153895603 6.90e-01 20 chr22:42342785-42342805 1.04e-01 20 chr21:44772640-44772660 7.91e-07 3_[+1(1.38e-05)]_9 chr1:55352986-55353006 9.48e-01 20 chr11:34460419-34460439 9.98e-01 20 chr17:58755143-58755163 1.33e-04 [+3(2.28e-05)]_12 chr7:150076307-150076327 3.23e-02 10_[+2(1.37e-05)]_2 chr14:23938627-23938647 1.48e-04 11_[+1(7.98e-05)]_1 chr4:166248708-166248728 7.92e-01 20 chr9:131940646-131940666 5.54e-01 20 chr16:3054022-3054042 6.21e-01 20 chr1:36851678-36851698 2.14e-03 20 chr3:127309624-127309644 2.16e-01 20 chr17:80416443-80416463 7.98e-01 20 chr7:100184181-100184201 9.14e-01 20 chr16:70323490-70323510 3.29e-01 20 chr10:99052459-99052479 7.85e-02 20 chr1:201123729-201123749 1.66e-01 20 chr7:154720093-154720113 9.05e-02 20 chr19:11457082-11457102 4.52e-03 1_[+2(5.72e-05)]_11 chr7:8008308-8008328 6.07e-01 20 chr9:34989566-34989586 7.71e-01 20 chr12:54753070-54753090 6.71e-01 20 chr3:50605219-50605239 8.66e-01 20 chr14:64108708-64108728 2.59e-05 20 chr1:167691143-167691163 5.62e-01 20 chr12:49504715-49504735 4.52e-03 2_[+3(4.12e-05)]_10 chr11:67275775-67275795 2.25e-04 7_[+1(4.27e-05)]_5 chr11:134093915-13409393 4.12e-03 20 chr13:20207745-20207765 4.62e-01 20 chr10:75255867-75255887 4.32e-01 20 chr6:31126242-31126262 9.38e-01 20 chr5:159546692-159546712 9.85e-01 20 chr19:50372960-50372980 9.30e-01 20 chr2:136288897-136288917 9.79e-01 20 chr17:4870692-4870712 6.61e-01 20 chr9:130159187-130159207 1.33e-01 20 chrX:80377264-80377284 2.76e-01 20 chr4:468054-468074 7.16e-01 20 chr6:82957537-82957557 2.03e-04 2_[+1(1.38e-05)]_10 chr19:47551955-47551975 2.03e-05 20 chr22:40440700-40440720 3.06e-01 20 chr16:103707-103727 8.77e-01 20 chrX:154444601-154444621 1.42e-01 20 chr3:152879115-152879135 9.90e-01 20 chr5:137549082-137549102 5.93e-02 20 chr19:42901182-42901202 9.51e-01 20 chr2:27008727-27008747 4.01e-01 20 chr1:43312178-43312198 6.13e-03 9_[+2(2.36e-05)]_3 chr5:98109204-98109224 4.17e-03 7_[+1(4.27e-05)]_5 chr14:91527392-91527412 9.93e-01 20 chr8:71314422-71314442 2.41e-05 4_[+1(4.27e-05)]_8 chr19:50096790-50096810 8.14e-01 20 chr19:19496461-19496481 1.76e-01 20 chr11:62599250-62599270 6.84e-01 20 chr10:127586028-12758604 1.98e-01 20 chr19:36248913-36248933 3.28e-02 10_[+2(1.37e-05)]_2 chr6:112194719-112194739 4.65e-01 20 chr19:18654426-18654446 2.73e-01 20 chr22:29999325-29999345 4.19e-01 20 chr19:14530253-14530273 9.84e-01 20 chr17:46125570-46125590 8.15e-02 20 chr1:197115859-197115879 8.94e-01 20 chr19:4968843-4968863 9.90e-02 20 chr15:90118611-90118631 3.27e-01 20 chr6:153304256-153304276 1.83e-01 20 chr13:103451405-10345142 7.84e-02 20 chr19:18303760-18303780 1.21e-01 20 chr11:65601317-65601337 6.80e-01 20 chr5:112312351-112312371 2.74e-02 20 chr15:43785430-43785450 1.94e-01 20 chr19:2900769-2900789 2.75e-01 20 chr1:153700358-153700378 4.26e-02 20 chr22:40440269-40440289 5.83e-01 20 chr3:88108237-88108257 7.79e-02 20 chr3:179280648-179280668 6.34e-05 7_[+4(1.19e-05)]_5 chr2:20251506-20251526 7.30e-03 11_[+4(1.19e-05)]_1 chr15:93425689-93425709 9.98e-01 20 chr4:149363771-149363791 5.97e-04 11_[+4(4.92e-06)]_1 chr11:46867851-46867871 1.97e-03 3_[+1(9.66e-05)]_9 chr19:36545749-36545769 7.55e-02 20 chr7:30066375-30066395 5.84e-05 20 chr20:32308164-32308184 2.06e-02 20 chr19:8408202-8408222 3.47e-01 20 chr19:12405745-12405765 6.51e-01 20 chr4:184580388-184580408 7.15e-01 20 chr16:19078820-19078840 8.41e-03 9_[+2(4.05e-05)]_3 chr16:57570019-57570039 2.55e-04 10_[+1(1.38e-05)]_2 chr16:57769298-57769318 8.25e-05 6_[+1(2.37e-05)]_6 chr7:44887952-44887972 9.92e-01 20 chr2:74685441-74685461 3.67e-01 20 chr17:79650869-79650889 2.13e-04 8_[+4(2.37e-05)]_4 chr11:64490735-64490755 3.81e-02 9_[+2(1.37e-05)]_3 chr17:26368550-26368570 3.49e-04 10_[+1(2.37e-05)]_2 chr6:26251141-26251161 9.76e-01 20 chr19:58790202-58790222 4.57e-01 20 chr9:139743736-139743756 4.24e-01 20 chr4:89513530-89513550 1.14e-02 20 chr9:131843184-131843204 1.10e-01 20 chr10:104261968-10426198 3.26e-01 20 chr14:73925355-73925375 4.08e-01 20 chr19:12662430-12662450 9.32e-01 20 chr11:124981569-12498158 1.64e-01 20 chr20:44509772-44509792 4.91e-01 20 chr19:17378023-17378043 1.68e-03 20 chr4:331471-331491 6.90e-01 20 chr11:13690145-13690165 2.25e-01 20 chr7:38217715-38217735 8.68e-02 20 chr1:20988073-20988093 9.65e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n04.farnam.hpc.yale.internal ********************************************************************************