******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/IKZF2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr17:73074804-73074824 1.0000 20 chr12:118674961-11867498 1.0000 20 chr2:20776702-20776722 1.0000 20 chr10:125919676-12591969 1.0000 20 chr10:106109603-10610962 1.0000 20 chr19:50872124-50872144 1.0000 20 chr1:12139618-12139638 1.0000 20 chr20:21529252-21529272 1.0000 20 chr6:36618843-36618863 1.0000 20 chr6:40687535-40687555 1.0000 20 chr3:137707170-137707190 1.0000 20 chr2:112664125-112664145 1.0000 20 chr16:18938088-18938108 1.0000 20 chr14:62219467-62219487 1.0000 20 chr4:40579260-40579280 1.0000 20 chr1:11025323-11025343 1.0000 20 chr5:55391622-55391642 1.0000 20 chr22:39511244-39511264 1.0000 20 chr9:102276106-102276126 1.0000 20 chr1:117337566-117337586 1.0000 20 chr11:71673800-71673820 1.0000 20 chr16:56643714-56643734 1.0000 20 chr17:48261239-48261259 1.0000 20 chr8:37992435-37992455 1.0000 20 chr21:30720756-30720776 1.0000 20 chr17:64260297-64260317 1.0000 20 chr14:52311356-52311376 1.0000 20 chr8:100787288-100787308 1.0000 20 chr11:5706186-5706206 1.0000 20 chr10:125802876-12580289 1.0000 20 chr8:95453245-95453265 1.0000 20 chr12:76311026-76311046 1.0000 20 chr3:57204271-57204291 1.0000 20 chr8:12445101-12445121 1.0000 20 chr8:141519373-141519393 1.0000 20 chr16:84760484-84760504 1.0000 20 chr2:157191294-157191314 1.0000 20 chr9:134138282-134138302 1.0000 20 chr12:122365471-12236549 1.0000 20 chr9:87324802-87324822 1.0000 20 chrX:108431108-108431128 1.0000 20 chr8:29522818-29522838 1.0000 20 chr2:70351728-70351748 1.0000 20 chr3:185972661-185972681 1.0000 20 chr2:62003275-62003295 1.0000 20 chr11:115866929-11586694 1.0000 20 chr13:111263440-11126346 1.0000 20 chr3:12229315-12229335 1.0000 20 chr11:60719848-60719868 1.0000 20 chr1:112019839-112019859 1.0000 20 chr14:106995774-10699579 1.0000 20 chr6:236097-236117 1.0000 20 chr3:61623239-61623259 1.0000 20 chr21:34696150-34696170 1.0000 20 chr3:132857066-132857086 1.0000 20 chr3:135915229-135915249 1.0000 20 chr11:78176683-78176703 1.0000 20 chr7:104584214-104584234 1.0000 20 chr2:169568815-169568835 1.0000 20 chr6:52217324-52217344 1.0000 20 chr10:49967358-49967378 1.0000 20 chr11:34270160-34270180 1.0000 20 chr1:160174444-160174464 1.0000 20 chr17:5138224-5138244 1.0000 20 chr14:102291489-10229150 1.0000 20 chr9:5958450-5958470 1.0000 20 chr18:47861138-47861158 1.0000 20 chr16:68791409-68791429 1.0000 20 chr16:69564653-69564673 1.0000 20 chr17:36134717-36134737 1.0000 20 chr17:57449855-57449875 1.0000 20 chr19:45225700-45225720 1.0000 20 chr9:99003827-99003847 1.0000 20 chr19:36400358-36400378 1.0000 20 chr5:156347668-156347688 1.0000 20 chr17:30007214-30007234 1.0000 20 chr9:5459445-5459465 1.0000 20 chr3:122202124-122202144 1.0000 20 chr1:153763803-153763823 1.0000 20 chr17:46912502-46912522 1.0000 20 chr1:161014732-161014752 1.0000 20 chr7:117413801-117413821 1.0000 20 chr2:42979637-42979657 1.0000 20 chr6:24940699-24940719 1.0000 20 chrX:148877475-148877495 1.0000 20 chr9:114727987-114728007 1.0000 20 chr22:37681230-37681250 1.0000 20 chr1:2509974-2509994 1.0000 20 chr16:27420060-27420080 1.0000 20 chr6:150322659-150322679 1.0000 20 chr1:117057842-117057862 1.0000 20 chr19:46018515-46018535 1.0000 20 chr6:30785216-30785236 1.0000 20 chr1:25054255-25054275 1.0000 20 chr14:76702729-76702749 1.0000 20 chr14:91708352-91708372 1.0000 20 chr12:53594372-53594392 1.0000 20 chr3:5068416-5068436 1.0000 20 chr2:228276196-228276216 1.0000 20 chr17:39835407-39835427 1.0000 20 chr2:148447273-148447293 1.0000 20 chr11:63399173-63399193 1.0000 20 chr17:76333863-76333883 1.0000 20 chr22:47170217-47170237 1.0000 20 chr6:84480799-84480819 1.0000 20 chr2:146967632-146967652 1.0000 20 chr6:64093947-64093967 1.0000 20 chr12:12186349-12186369 1.0000 20 chr9:36458582-36458602 1.0000 20 chr5:180232355-180232375 1.0000 20 chr7:98977966-98977986 1.0000 20 chr1:59898469-59898489 1.0000 20 chr17:34431007-34431027 1.0000 20 chr4:103464313-103464333 1.0000 20 chr8:28862266-28862286 1.0000 20 chr15:77480311-77480331 1.0000 20 chr1:206677567-206677587 1.0000 20 chr13:51905022-51905042 1.0000 20 chr9:80531362-80531382 1.0000 20 chr3:187547045-187547065 1.0000 20 chr9:35634707-35634727 1.0000 20 chr17:47753914-47753934 1.0000 20 chr15:91440534-91440554 1.0000 20 chr2:166810506-166810526 1.0000 20 chr1:160752175-160752195 1.0000 20 chrX:153273491-153273511 1.0000 20 chr9:117370160-117370180 1.0000 20 chr3:118491756-118491776 1.0000 20 chr2:38936887-38936907 1.0000 20 chr14:72631271-72631291 1.0000 20 chr11:65341932-65341952 1.0000 20 chr21:42733796-42733816 1.0000 20 chr20:35994924-35994944 1.0000 20 chr12:2488112-2488132 1.0000 20 chr16:21285688-21285708 1.0000 20 chr6:85256335-85256355 1.0000 20 chr8:80967371-80967391 1.0000 20 chr7:50484293-50484313 1.0000 20 chr12:27430923-27430943 1.0000 20 chr1:205449868-205449888 1.0000 20 chr7:72011740-72011760 1.0000 20 chr13:41092827-41092847 1.0000 20 chr16:29822766-29822786 1.0000 20 chr11:95931205-95931225 1.0000 20 chr8:42658734-42658754 1.0000 20 chr5:153893342-153893362 1.0000 20 chr11:65431467-65431487 1.0000 20 chr4:152808765-152808785 1.0000 20 chr8:82199117-82199137 1.0000 20 chr2:136743312-136743332 1.0000 20 chr5:75878251-75878271 1.0000 20 chr18:3324062-3324082 1.0000 20 chr17:46918898-46918918 1.0000 20 chr1:11000314-11000334 1.0000 20 chr12:98668808-98668828 1.0000 20 chr14:40443331-40443351 1.0000 20 chr16:10008436-10008456 1.0000 20 chr19:39074417-39074437 1.0000 20 chr11:118085203-11808522 1.0000 20 chr3:156806685-156806705 1.0000 20 chr10:74016988-74017008 1.0000 20 chr6:75994566-75994586 1.0000 20 chr4:40765498-40765518 1.0000 20 chr7:66351281-66351301 1.0000 20 chrX:70838418-70838438 1.0000 20 chr1:33458298-33458318 1.0000 20 chrX:1623429-1623449 1.0000 20 chr12:7063067-7063087 1.0000 20 chr8:119971381-119971401 1.0000 20 chr6:130835143-130835163 1.0000 20 chr12:101381899-10138191 1.0000 20 chr4:57684349-57684369 1.0000 20 chr19:6528947-6528967 1.0000 20 chr1:32394371-32394391 1.0000 20 chr4:151973650-151973670 1.0000 20 chr7:99156190-99156210 1.0000 20 chr7:39629503-39629523 1.0000 20 chr3:17440801-17440821 1.0000 20 chr5:142437403-142437423 1.0000 20 chr13:77898183-77898203 1.0000 20 chr18:49242825-49242845 1.0000 20 chr3:9691988-9692008 1.0000 20 chr3:5020498-5020518 1.0000 20 chr10:29948166-29948186 1.0000 20 chr1:181031703-181031723 1.0000 20 chr19:44294905-44294925 1.0000 20 chr19:45946938-45946958 1.0000 20 chr20:52271687-52271707 1.0000 20 chr9:113717274-113717294 1.0000 20 chr1:202585394-202585414 1.0000 20 chr3:63908001-63908021 1.0000 20 chr6:143141120-143141140 1.0000 20 chrX:7002312-7002332 1.0000 20 chr15:40836257-40836277 1.0000 20 chr3:104240971-104240991 1.0000 20 chr16:69503864-69503884 1.0000 20 chr10:129863030-12986305 1.0000 20 chr19:42375794-42375814 1.0000 20 chr7:20338303-20338323 1.0000 20 chr19:6556618-6556638 1.0000 20 chr12:94699522-94699542 1.0000 20 chr15:40843027-40843047 1.0000 20 chr7:34794834-34794854 1.0000 20 chr5:94950917-94950937 1.0000 20 chr19:6947869-6947889 1.0000 20 chr5:176727464-176727484 1.0000 20 chr17:4843830-4843850 1.0000 20 chr18:52936307-52936327 1.0000 20 chr8:37761163-37761183 1.0000 20 chr11:59148142-59148162 1.0000 20 chr6:85257371-85257391 1.0000 20 chr2:161945337-161945357 1.0000 20 chr11:93451564-93451584 1.0000 20 chr2:207322138-207322158 1.0000 20 chr14:52340226-52340246 1.0000 20 chr2:37851277-37851297 1.0000 20 chr7:105752221-105752241 1.0000 20 chr16:66558896-66558916 1.0000 20 chr5:37672477-37672497 1.0000 20 chr8:131144301-131144321 1.0000 20 chr9:126512085-126512105 1.0000 20 chr16:30177656-30177676 1.0000 20 chr22:42336080-42336100 1.0000 20 chr16:20915977-20915997 1.0000 20 chr18:3586818-3586838 1.0000 20 chr3:15598220-15598240 1.0000 20 chr6:24934298-24934318 1.0000 20 chr13:81052324-81052344 1.0000 20 chr2:43614636-43614656 1.0000 20 chr11:65189793-65189813 1.0000 20 chr17:28535426-28535446 1.0000 20 chr19:35909051-35909071 1.0000 20 chr19:52074503-52074523 1.0000 20 chr15:66683204-66683224 1.0000 20 chr4:153564812-153564832 1.0000 20 chr15:85294023-85294043 1.0000 20 chr2:17996841-17996861 1.0000 20 chr11:102216755-10221677 1.0000 20 chr1:33926898-33926918 1.0000 20 chr20:8380803-8380823 1.0000 20 chr1:186344925-186344945 1.0000 20 chr8:28259610-28259630 1.0000 20 chr17:49198489-49198509 1.0000 20 chr16:50310959-50310979 1.0000 20 chr17:28690978-28690998 1.0000 20 chr19:41283243-41283263 1.0000 20 chr15:74692323-74692343 1.0000 20 chr12:6432705-6432725 1.0000 20 chr3:90085110-90085130 1.0000 20 chr16:50769767-50769787 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_IKZF2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/IKZF2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.272 C 0.242 G 0.234 T 0.251 Background letter frequencies (from file dataset with add-one prior applied): A 0.272 C 0.242 G 0.234 T 0.251 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CHCTYYCH MEME-1 width = 8 sites = 44 llr = 278 E-value = 2.8e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif CHCTYYCH MEME-1 Description -------------------------------------------------------------------------------- Simplified A :32::::2 pos.-specific C a45:45a4 probability G ::2::::: matrix T :31a64:4 bits 2.1 * * * 1.9 * * * 1.7 * * * 1.5 * * * Relative 1.3 * * * Entropy 1.0 * ** * (9.1 bits) 0.8 * **** 0.6 * **** 0.4 ** ***** 0.2 ******** 0.0 -------- Multilevel CCCTTCCC consensus A CT T sequence T A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CHCTYYCH MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:93451564-93451584 10 4.00e-05 TCATTATGT CACTTCCC CTT chr2:161945337-161945357 12 4.00e-05 CCAAAACTCT CACTTCCC T chr20:35994924-35994944 2 4.00e-05 c cacttccc cctaaacttc chr17:34431007-34431027 3 4.00e-05 AC CACTTCCC TTTTCTTCTC chr14:106995774-10699579 4 5.31e-05 tct ccctttcc ccgggggag chr8:28259610-28259630 13 8.10e-05 AGCCCCAACC CTCTTCCC chr9:126512085-126512105 2 8.10e-05 T CACTTCCT GCCCTGTACT chr8:82199117-82199137 6 8.10e-05 agagt ctcttccc taaaggt chr22:47170217-47170237 8 8.10e-05 GCCTGGG CTCTTCCC ATTTC chr14:62219467-62219487 12 8.10e-05 ATTTCCTTAT CACTTCCT C chr12:7063067-7063087 13 1.22e-04 AATTTGCCCG CCCTCCCC chr6:236097-236117 4 2.05e-04 ttt cactttct cttttgttc chr19:6528947-6528967 7 2.17e-04 TCACGT CCCTCTCC ATCTGG chrX:70838418-70838438 2 3.44e-04 C CTCTTCCA GGGAGTTACC chr7:66351281-66351301 6 3.44e-04 aaacc ctctccct acctcca chr9:35634707-35634727 2 3.44e-04 C CTCTCCCT GCCTTAGACT chr7:72011740-72011760 1 4.15e-04 . CCCTCCCA AGAGAGTGAA chr5:180232355-180232375 3 4.15e-04 TG CCCTCCCA TAAACCATGC chr17:36134717-36134737 3 4.15e-04 GA CTCTCTCC TGGGTACTCA chr1:117337566-117337586 10 4.15e-04 ggatctggt cactttca ctt chr15:40836257-40836277 8 5.00e-04 AGCAATC CTCTTTCA CTTCC chr15:40843027-40843047 3 5.40e-04 CA CCCTCTCA TATTCCAATT chr1:59898469-59898489 9 6.12e-04 ataatttc ccattcct agtt chr10:49967358-49967378 1 7.10e-04 . cctttcct taacacttgc chr7:34794834-34794854 11 7.68e-04 acaaaggttt caattcct cc chr1:153763803-153763823 8 7.68e-04 agtaaag ctgttcct agaaa chr17:5138224-5138244 9 7.68e-04 CAACCATC CCTTTTCC AGGG chr12:53594372-53594392 8 9.25e-04 GATTCAG CAGTTTCT TCAAA chr17:46912502-46912522 13 9.25e-04 TTGTTGGAGC CCATTTCT chr3:122202124-122202144 12 9.25e-04 TGAGTCATTC CTGTTTCC C chr5:37672477-37672497 6 9.94e-04 ggcct ccgtctcc tgcatgt chr1:206677567-206677587 9 9.94e-04 GTCATAAT CCTTCCCC TTGG chr1:202585394-202585414 8 1.14e-03 TTGAGGG CTTTTCCT CTGGT chrX:108431108-108431128 5 1.14e-03 TTCA CCATCCCT TGAATCCC chr5:176727464-176727484 1 1.27e-03 . CAGTCTCC CTCCACAGGA chr13:77898183-77898203 9 1.27e-03 TTGAATAT CCTTCCCT CAAC chr6:64093947-64093967 9 1.27e-03 TGTATTTA CAGTCTCC TCTG chr19:46018515-46018535 11 1.54e-03 ACCAACTTCC CCATTTCA GG chr4:152808765-152808785 5 1.62e-03 AGAG CCTTTTCA TTTGAGGA chr1:12139618-12139638 5 1.62e-03 CCGG CCCTTGCC TCCTTCTC chr4:57684349-57684369 7 1.76e-03 AAAGAT CAATCTCT CTGTCT chr20:21529252-21529272 10 1.76e-03 AGGACACTT CTGTTTCA ATT chr10:29948166-29948186 6 1.92e-03 CCCTG CAATCCCA GACTACA chr5:156347668-156347688 10 2.03e-03 CAGGTCAAA CACTTGCT ATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CHCTYYCH MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:93451564-93451584 4e-05 9_[+1]_3 chr2:161945337-161945357 4e-05 11_[+1]_1 chr20:35994924-35994944 4e-05 1_[+1]_11 chr17:34431007-34431027 4e-05 2_[+1]_10 chr14:106995774-10699579 5.3e-05 3_[+1]_9 chr8:28259610-28259630 8.1e-05 12_[+1] chr9:126512085-126512105 8.1e-05 1_[+1]_11 chr8:82199117-82199137 8.1e-05 5_[+1]_7 chr22:47170217-47170237 8.1e-05 7_[+1]_5 chr14:62219467-62219487 8.1e-05 11_[+1]_1 chr12:7063067-7063087 0.00012 12_[+1] chr6:236097-236117 0.0002 3_[+1]_9 chr19:6528947-6528967 0.00022 6_[+1]_6 chrX:70838418-70838438 0.00034 1_[+1]_11 chr7:66351281-66351301 0.00034 5_[+1]_7 chr9:35634707-35634727 0.00034 1_[+1]_11 chr7:72011740-72011760 0.00041 [+1]_12 chr5:180232355-180232375 0.00041 2_[+1]_10 chr17:36134717-36134737 0.00041 2_[+1]_10 chr1:117337566-117337586 0.00041 9_[+1]_3 chr15:40836257-40836277 0.0005 7_[+1]_5 chr15:40843027-40843047 0.00054 2_[+1]_10 chr1:59898469-59898489 0.00061 8_[+1]_4 chr10:49967358-49967378 0.00071 [+1]_12 chr7:34794834-34794854 0.00077 10_[+1]_2 chr1:153763803-153763823 0.00077 7_[+1]_5 chr17:5138224-5138244 0.00077 8_[+1]_4 chr12:53594372-53594392 0.00092 7_[+1]_5 chr17:46912502-46912522 0.00092 12_[+1] chr3:122202124-122202144 0.00092 11_[+1]_1 chr5:37672477-37672497 0.00099 5_[+1]_7 chr1:206677567-206677587 0.00099 8_[+1]_4 chr1:202585394-202585414 0.0011 7_[+1]_5 chrX:108431108-108431128 0.0011 4_[+1]_8 chr5:176727464-176727484 0.0013 [+1]_12 chr13:77898183-77898203 0.0013 8_[+1]_4 chr6:64093947-64093967 0.0013 8_[+1]_4 chr19:46018515-46018535 0.0015 10_[+1]_2 chr4:152808765-152808785 0.0016 4_[+1]_8 chr1:12139618-12139638 0.0016 4_[+1]_8 chr4:57684349-57684369 0.0018 6_[+1]_6 chr20:21529252-21529272 0.0018 9_[+1]_3 chr10:29948166-29948186 0.0019 5_[+1]_7 chr5:156347668-156347688 0.002 9_[+1]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CHCTYYCH MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CHCTYYCH width=8 seqs=44 chr11:93451564-93451584 ( 10) CACTTCCC 1 chr2:161945337-161945357 ( 12) CACTTCCC 1 chr20:35994924-35994944 ( 2) CACTTCCC 1 chr17:34431007-34431027 ( 3) CACTTCCC 1 chr14:106995774-10699579 ( 4) CCCTTTCC 1 chr8:28259610-28259630 ( 13) CTCTTCCC 1 chr9:126512085-126512105 ( 2) CACTTCCT 1 chr8:82199117-82199137 ( 6) CTCTTCCC 1 chr22:47170217-47170237 ( 8) CTCTTCCC 1 chr14:62219467-62219487 ( 12) CACTTCCT 1 chr12:7063067-7063087 ( 13) CCCTCCCC 1 chr6:236097-236117 ( 4) CACTTTCT 1 chr19:6528947-6528967 ( 7) CCCTCTCC 1 chrX:70838418-70838438 ( 2) CTCTTCCA 1 chr7:66351281-66351301 ( 6) CTCTCCCT 1 chr9:35634707-35634727 ( 2) CTCTCCCT 1 chr7:72011740-72011760 ( 1) CCCTCCCA 1 chr5:180232355-180232375 ( 3) CCCTCCCA 1 chr17:36134717-36134737 ( 3) CTCTCTCC 1 chr1:117337566-117337586 ( 10) CACTTTCA 1 chr15:40836257-40836277 ( 8) CTCTTTCA 1 chr15:40843027-40843047 ( 3) CCCTCTCA 1 chr1:59898469-59898489 ( 9) CCATTCCT 1 chr10:49967358-49967378 ( 1) CCTTTCCT 1 chr7:34794834-34794854 ( 11) CAATTCCT 1 chr1:153763803-153763823 ( 8) CTGTTCCT 1 chr17:5138224-5138244 ( 9) CCTTTTCC 1 chr12:53594372-53594392 ( 8) CAGTTTCT 1 chr17:46912502-46912522 ( 13) CCATTTCT 1 chr3:122202124-122202144 ( 12) CTGTTTCC 1 chr5:37672477-37672497 ( 6) CCGTCTCC 1 chr1:206677567-206677587 ( 9) CCTTCCCC 1 chr1:202585394-202585414 ( 8) CTTTTCCT 1 chrX:108431108-108431128 ( 5) CCATCCCT 1 chr5:176727464-176727484 ( 1) CAGTCTCC 1 chr13:77898183-77898203 ( 9) CCTTCCCT 1 chr6:64093947-64093967 ( 9) CAGTCTCC 1 chr19:46018515-46018535 ( 11) CCATTTCA 1 chr4:152808765-152808785 ( 5) CCTTTTCA 1 chr1:12139618-12139638 ( 5) CCCTTGCC 1 chr4:57684349-57684369 ( 7) CAATCTCT 1 chr20:21529252-21529272 ( 10) CTGTTTCA 1 chr10:29948166-29948186 ( 6) CAATCCCA 1 chr5:156347668-156347688 ( 10) CACTTGCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CHCTYYCH MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.73346 E= 2.8e-005 -1210 204 -1210 -1210 32 67 -1210 12 -77 117 -56 -88 -1210 -1210 -1210 199 -1210 58 -1210 134 -1210 117 -236 70 -1210 204 -1210 -1210 -26 75 -1210 53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CHCTYYCH MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 44 E= 2.8e-005 0.000000 1.000000 0.000000 0.000000 0.340909 0.386364 0.000000 0.272727 0.159091 0.545455 0.159091 0.136364 0.000000 0.000000 0.000000 1.000000 0.000000 0.363636 0.000000 0.636364 0.000000 0.545455 0.045455 0.409091 0.000000 1.000000 0.000000 0.000000 0.227273 0.409091 0.000000 0.363636 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CHCTYYCH MEME-1 regular expression -------------------------------------------------------------------------------- C[CAT]CT[TC][CT]C[CTA] -------------------------------------------------------------------------------- Time 1.87 secs. ******************************************************************************** ******************************************************************************** MOTIF AGTGARAR MEME-2 width = 8 sites = 37 llr = 242 E-value = 2.2e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGTGARAR MEME-2 Description -------------------------------------------------------------------------------- Simplified A 821184a5 pos.-specific C :2:::::: probability G :61926:5 matrix T 2:7::::: bits 2.1 1.9 * 1.7 * * 1.5 * * Relative 1.3 * ** * Entropy 1.0 * ***** (9.4 bits) 0.8 * ***** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGTGAGAA consensus A GA G sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGARAR MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr9:117370160-117370180 1 1.51e-05 . agtgagag aacaggggga chr1:160174444-160174464 7 1.51e-05 AGGGGA AGTGAGAG CTGCCA chr17:28535426-28535446 1 3.27e-05 . AGTGAGAA CTGAGAACTC chrX:153273491-153273511 2 3.27e-05 a agtgagaa aacagacaag chr15:85294023-85294043 4 5.04e-05 gga agtgaaag aggcctgtg chr7:72011740-72011760 13 7.08e-05 CTCCCAAGAG AGTGAAAA chr2:62003275-62003295 6 7.08e-05 gcaga agtgaaaa tgacatt chr6:84480799-84480819 9 1.35e-04 GCTTGTTA AATGAGAG GAGT chr11:71673800-71673820 13 1.35e-04 gttttgagga actgagaa chr15:74692323-74692343 12 1.71e-04 TGGAGACAGC AGTGGGAA G chr1:186344925-186344945 9 1.71e-04 GGCTTTGG AGTGGGAA GTGA chr18:52936307-52936327 4 1.71e-04 CAA AGTGGGAA TACTGACTG chr3:90085110-90085130 3 2.17e-04 AT AGGGAGAG CAAGGTCCAT chr6:75994566-75994586 7 2.17e-04 agaggg agggagag agggag chr14:102291489-10229150 11 2.17e-04 TACAGAAGAA ACTGAAAG TG chr1:160752175-160752195 6 3.07e-04 GCAGG TGTGAGAA ACATTGC chr15:91440534-91440554 9 3.07e-04 AAAGCAGA ACTGAAAA actt chr14:76702729-76702749 10 3.07e-04 CAGATGACT AATGAAAG AAT chr8:131144301-131144321 12 3.84e-04 GAAATGAGGA AGAGAGAA T chr10:106109603-10610962 10 3.84e-04 gccagctga agagagaa aga chr1:112019839-112019859 9 4.54e-04 TTAATCAG TGTGAAAA CCAT chr2:166810506-166810526 10 5.40e-04 GGAGGTCAC ACTGGGAA ACG chr1:181031703-181031723 7 5.86e-04 ACAGCT TCTGAGAG GAGGCT chr2:37851277-37851297 3 6.93e-04 GT TCTGAGAA TGAGTGTACA chr6:143141120-143141140 9 6.93e-04 TGCTAATC AAGGAGAG GCGG chr6:130835143-130835163 3 6.93e-04 gc tatgagag tcccaaagtt chr8:100787288-100787308 2 8.11e-04 c aatggaag attcacacct chr11:95931205-95931225 5 8.85e-04 AGAC Aatggaaa accattga chr1:25054255-25054275 3 9.41e-04 CA AAAGAGAA ACCAACTAAT chr9:113717274-113717294 13 1.01e-03 aatgataaac agtaagaa chr9:134138282-134138302 4 1.01e-03 gga acggaaag ttgatattt chr19:35909051-35909071 3 1.14e-03 AT TATGAAAG CAGAACAAAG chr3:156806685-156806705 9 1.14e-03 GGCCGCAG AGCGAGAG CGTT chr8:29522818-29522838 1 1.14e-03 . AGGGGAAG AAAAACAAGC chr17:46918898-46918918 10 1.27e-03 CGAAGTGAA ACAGAAAG CAA chr22:37681230-37681250 13 1.35e-03 GGAAGGACAA AGAGGAAG chr2:38936887-38936907 1 1.46e-03 . AGTAAAAA TTCCCACCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGARAR MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:117370160-117370180 1.5e-05 [+2]_12 chr1:160174444-160174464 1.5e-05 6_[+2]_6 chr17:28535426-28535446 3.3e-05 [+2]_12 chrX:153273491-153273511 3.3e-05 1_[+2]_11 chr15:85294023-85294043 5e-05 3_[+2]_9 chr7:72011740-72011760 7.1e-05 12_[+2] chr2:62003275-62003295 7.1e-05 5_[+2]_7 chr6:84480799-84480819 0.00014 8_[+2]_4 chr11:71673800-71673820 0.00014 12_[+2] chr15:74692323-74692343 0.00017 11_[+2]_1 chr1:186344925-186344945 0.00017 8_[+2]_4 chr18:52936307-52936327 0.00017 3_[+2]_9 chr3:90085110-90085130 0.00022 2_[+2]_10 chr6:75994566-75994586 0.00022 6_[+2]_6 chr14:102291489-10229150 0.00022 10_[+2]_2 chr1:160752175-160752195 0.00031 5_[+2]_7 chr15:91440534-91440554 0.00031 8_[+2]_4 chr14:76702729-76702749 0.00031 9_[+2]_3 chr8:131144301-131144321 0.00038 11_[+2]_1 chr10:106109603-10610962 0.00038 9_[+2]_3 chr1:112019839-112019859 0.00045 8_[+2]_4 chr2:166810506-166810526 0.00054 9_[+2]_3 chr1:181031703-181031723 0.00059 6_[+2]_6 chr2:37851277-37851297 0.00069 2_[+2]_10 chr6:143141120-143141140 0.00069 8_[+2]_4 chr6:130835143-130835163 0.00069 2_[+2]_10 chr8:100787288-100787308 0.00081 1_[+2]_11 chr11:95931205-95931225 0.00088 4_[+2]_8 chr1:25054255-25054275 0.00094 2_[+2]_10 chr9:113717274-113717294 0.001 12_[+2] chr9:134138282-134138302 0.001 3_[+2]_9 chr19:35909051-35909071 0.0011 2_[+2]_10 chr3:156806685-156806705 0.0011 8_[+2]_4 chr8:29522818-29522838 0.0011 [+2]_12 chr17:46918898-46918918 0.0013 9_[+2]_3 chr22:37681230-37681250 0.0014 12_[+2] chr2:38936887-38936907 0.0015 [+2]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGARAR MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGTGARAR width=8 seqs=37 chr9:117370160-117370180 ( 1) AGTGAGAG 1 chr1:160174444-160174464 ( 7) AGTGAGAG 1 chr17:28535426-28535446 ( 1) AGTGAGAA 1 chrX:153273491-153273511 ( 2) AGTGAGAA 1 chr15:85294023-85294043 ( 4) AGTGAAAG 1 chr7:72011740-72011760 ( 13) AGTGAAAA 1 chr2:62003275-62003295 ( 6) AGTGAAAA 1 chr6:84480799-84480819 ( 9) AATGAGAG 1 chr11:71673800-71673820 ( 13) ACTGAGAA 1 chr15:74692323-74692343 ( 12) AGTGGGAA 1 chr1:186344925-186344945 ( 9) AGTGGGAA 1 chr18:52936307-52936327 ( 4) AGTGGGAA 1 chr3:90085110-90085130 ( 3) AGGGAGAG 1 chr6:75994566-75994586 ( 7) AGGGAGAG 1 chr14:102291489-10229150 ( 11) ACTGAAAG 1 chr1:160752175-160752195 ( 6) TGTGAGAA 1 chr15:91440534-91440554 ( 9) ACTGAAAA 1 chr14:76702729-76702749 ( 10) AATGAAAG 1 chr8:131144301-131144321 ( 12) AGAGAGAA 1 chr10:106109603-10610962 ( 10) AGAGAGAA 1 chr1:112019839-112019859 ( 9) TGTGAAAA 1 chr2:166810506-166810526 ( 10) ACTGGGAA 1 chr1:181031703-181031723 ( 7) TCTGAGAG 1 chr2:37851277-37851297 ( 3) TCTGAGAA 1 chr6:143141120-143141140 ( 9) AAGGAGAG 1 chr6:130835143-130835163 ( 3) TATGAGAG 1 chr8:100787288-100787308 ( 2) AATGGAAG 1 chr11:95931205-95931225 ( 5) AATGGAAA 1 chr1:25054255-25054275 ( 3) AAAGAGAA 1 chr9:113717274-113717294 ( 13) AGTAAGAA 1 chr9:134138282-134138302 ( 4) ACGGAAAG 1 chr19:35909051-35909071 ( 3) TATGAAAG 1 chr3:156806685-156806705 ( 9) AGCGAGAG 1 chr8:29522818-29522838 ( 1) AGGGGAAG 1 chr17:46918898-46918918 ( 10) ACAGAAAG 1 chr22:37681230-37681250 ( 13) AGAGGAAG 1 chr2:38936887-38936907 ( 1) AGTAAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGARAR MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.87349 E= 2.2e-002 162 -1185 -1185 -63 -33 -16 128 -1185 -101 -316 -79 148 -233 -1185 201 -1185 153 -1185 -12 -1185 57 -1185 134 -1185 188 -1185 -1185 -1185 92 -1185 105 -1185 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGARAR MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 37 E= 2.2e-002 0.837838 0.000000 0.000000 0.162162 0.216216 0.216216 0.567568 0.000000 0.135135 0.027027 0.135135 0.702703 0.054054 0.000000 0.945946 0.000000 0.783784 0.000000 0.216216 0.000000 0.405405 0.000000 0.594595 0.000000 1.000000 0.000000 0.000000 0.000000 0.513514 0.000000 0.486486 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGARAR MEME-2 regular expression -------------------------------------------------------------------------------- A[GAC]TG[AG][GA]A[AG] -------------------------------------------------------------------------------- Time 4.22 secs. ******************************************************************************** ******************************************************************************** MOTIF GSGGTGGG MEME-3 width = 8 sites = 2 llr = 22 E-value = 4.8e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSGGTGGG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :5:::::: probability G a5aa:aaa matrix T ::::a::: bits 2.1 * ****** 1.9 * ****** 1.7 * ****** 1.5 * ****** Relative 1.3 * ****** Entropy 1.0 ******** (15.6 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCGGTGGG consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGGTGGG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr16:69564653-69564673 12 9.64e-06 ATGTGATGCG GGGGTGGG G chr1:205449868-205449888 12 1.96e-05 gtccaaggca gcggtggg a -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGGTGGG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:69564653-69564673 9.6e-06 11_[+3]_1 chr1:205449868-205449888 2e-05 11_[+3]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGGTGGG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSGGTGGG width=8 seqs=2 chr16:69564653-69564673 ( 12) GGGGTGGG 1 chr1:205449868-205449888 ( 12) GCGGTGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGGTGGG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.81663 E= 4.8e+003 -765 -765 209 -765 -765 104 109 -765 -765 -765 209 -765 -765 -765 209 -765 -765 -765 -765 199 -765 -765 209 -765 -765 -765 209 -765 -765 -765 209 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGGTGGG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 4.8e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGGTGGG MEME-3 regular expression -------------------------------------------------------------------------------- G[CG]GGTGGG -------------------------------------------------------------------------------- Time 7.03 secs. ******************************************************************************** ******************************************************************************** MOTIF CHGGGAAG MEME-4 width = 8 sites = 9 llr = 77 E-value = 3.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CHGGGAAG MEME-4 Description -------------------------------------------------------------------------------- Simplified A 12:::8a: pos.-specific C 73:::::: probability G :1aaa2:a matrix T 23:::::: bits 2.1 *** * 1.9 *** ** 1.7 *** ** 1.5 *** ** Relative 1.3 ****** Entropy 1.0 ****** (12.3 bits) 0.8 * ****** 0.6 * ****** 0.4 * ****** 0.2 * ****** 0.0 -------- Multilevel CCGGGAAG consensus TT G sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CHGGGAAG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:65341932-65341952 13 2.65e-05 TCCCTGCCTG CCGGGAAG chr16:68791409-68791429 1 2.65e-05 . CTGGGAAG CTGTTGAACC chr1:33458298-33458318 1 4.11e-05 . CAGGGAAG GGAGTTTTTA chr9:5459445-5459465 1 4.11e-05 . CAGGGAAG TAGAACTCCT chr11:5706186-5706206 7 7.64e-05 GTGATT CTGGGGAG AAGAGT chr17:49198489-49198509 9 1.04e-04 GGAGGGGT TCGGGAAG AGTG chr19:45225700-45225720 9 1.04e-04 CTCCCACC TCGGGAAG CCCC chr6:30785216-30785236 1 1.61e-04 . ATGGGAAG ATTTGCTGCC chr14:106995774-10699579 13 1.72e-04 tccctttccc cgggggag -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CHGGGAAG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:65341932-65341952 2.6e-05 12_[+4] chr16:68791409-68791429 2.6e-05 [+4]_12 chr1:33458298-33458318 4.1e-05 [+4]_12 chr9:5459445-5459465 4.1e-05 [+4]_12 chr11:5706186-5706206 7.6e-05 6_[+4]_6 chr17:49198489-49198509 0.0001 8_[+4]_4 chr19:45225700-45225720 0.0001 8_[+4]_4 chr6:30785216-30785236 0.00016 [+4]_12 chr14:106995774-10699579 0.00017 12_[+4] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CHGGGAAG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CHGGGAAG width=8 seqs=9 chr11:65341932-65341952 ( 13) CCGGGAAG 1 chr16:68791409-68791429 ( 1) CTGGGAAG 1 chr1:33458298-33458318 ( 1) CAGGGAAG 1 chr9:5459445-5459465 ( 1) CAGGGAAG 1 chr11:5706186-5706206 ( 7) CTGGGGAG 1 chr17:49198489-49198509 ( 9) TCGGGAAG 1 chr19:45225700-45225720 ( 9) TCGGGAAG 1 chr6:30785216-30785236 ( 1) ATGGGAAG 1 chr14:106995774-10699579 ( 13) CGGGGGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CHGGGAAG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.34207 E= 3.1e+003 -129 146 -982 -18 -29 46 -107 41 -982 -982 209 -982 -982 -982 209 -982 -982 -982 209 -982 151 -982 -8 -982 188 -982 -982 -982 -982 -982 209 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CHGGGAAG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 3.1e+003 0.111111 0.666667 0.000000 0.222222 0.222222 0.333333 0.111111 0.333333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.777778 0.000000 0.222222 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CHGGGAAG MEME-4 regular expression -------------------------------------------------------------------------------- [CT][CTA]GGG[AG]AG -------------------------------------------------------------------------------- Time 10.10 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGCGGTG MEME-5 width = 8 sites = 2 llr = 23 E-value = 4.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGCGGTG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::a:::: probability G a:a:aa:a matrix T :a::::a: bits 2.1 ******** 1.9 ******** 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.0 ******** (16.5 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTGCGGTG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCGGTG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:63399173-63399193 5 1.07e-05 acgg gtgcggtg gctcacgc chr2:112664125-112664145 6 1.07e-05 TCTCA GTGCGGTG ATAAATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCGGTG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:63399173-63399193 1.1e-05 4_[+5]_8 chr2:112664125-112664145 1.1e-05 5_[+5]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCGGTG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGCGGTG width=8 seqs=2 chr11:63399173-63399193 ( 5) GTGCGGTG 1 chr2:112664125-112664145 ( 6) GTGCGGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCGGTG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.6653 E= 4.5e+003 -765 -765 209 -765 -765 -765 -765 199 -765 -765 209 -765 -765 204 -765 -765 -765 -765 209 -765 -765 -765 209 -765 -765 -765 -765 199 -765 -765 209 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCGGTG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 4.5e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCGGTG MEME-5 regular expression -------------------------------------------------------------------------------- GTGCGGTG -------------------------------------------------------------------------------- Time 12.03 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:73074804-73074824 3.09e-02 20 chr12:118674961-11867498 3.75e-01 20 chr2:20776702-20776722 7.41e-01 20 chr10:125919676-12591969 1.00e+00 20 chr10:106109603-10610962 7.71e-02 20 chr19:50872124-50872144 7.62e-01 20 chr1:12139618-12139638 5.46e-01 20 chr20:21529252-21529272 6.08e-01 20 chr6:36618843-36618863 6.86e-02 20 chr6:40687535-40687555 9.41e-02 20 chr3:137707170-137707190 7.98e-01 20 chr2:112664125-112664145 4.21e-03 5_[+5(1.07e-05)]_7 chr16:18938088-18938108 7.94e-01 20 chr14:62219467-62219487 1.85e-01 11_[+1(8.10e-05)]_1 chr4:40579260-40579280 5.32e-01 20 chr1:11025323-11025343 9.86e-01 20 chr5:55391622-55391642 8.02e-01 20 chr22:39511244-39511264 2.81e-01 20 chr9:102276106-102276126 4.16e-01 20 chr1:117337566-117337586 1.68e-01 20 chr11:71673800-71673820 6.94e-02 20 chr16:56643714-56643734 6.44e-01 20 chr17:48261239-48261259 3.43e-01 20 chr8:37992435-37992455 8.81e-01 20 chr21:30720756-30720776 9.48e-01 20 chr17:64260297-64260317 8.37e-01 20 chr14:52311356-52311376 1.54e-01 20 chr8:100787288-100787308 8.84e-02 20 chr11:5706186-5706206 3.10e-03 6_[+4(7.64e-05)]_6 chr10:125802876-12580289 2.26e-01 20 chr8:95453245-95453265 9.95e-01 20 chr12:76311026-76311046 7.19e-01 20 chr3:57204271-57204291 6.94e-01 20 chr8:12445101-12445121 4.36e-01 20 chr8:141519373-141519393 1.59e-01 20 chr16:84760484-84760504 4.53e-02 20 chr2:157191294-157191314 1.63e-01 20 chr9:134138282-134138302 6.73e-02 20 chr12:122365471-12236549 4.66e-01 20 chr9:87324802-87324822 9.46e-01 20 chrX:108431108-108431128 4.22e-01 20 chr8:29522818-29522838 8.93e-03 20 chr2:70351728-70351748 7.35e-01 20 chr3:185972661-185972681 8.80e-01 20 chr2:62003275-62003295 4.77e-02 5_[+2(7.08e-05)]_7 chr11:115866929-11586694 4.37e-01 20 chr13:111263440-11126346 7.94e-01 20 chr3:12229315-12229335 4.57e-02 20 chr11:60719848-60719868 1.13e-01 20 chr1:112019839-112019859 1.15e-01 20 chr14:106995774-10699579 7.79e-05 3_[+1(5.31e-05)]_9 chr6:236097-236117 2.92e-01 20 chr3:61623239-61623259 8.69e-01 20 chr21:34696150-34696170 3.40e-01 20 chr3:132857066-132857086 7.99e-01 20 chr3:135915229-135915249 8.86e-01 20 chr11:78176683-78176703 9.43e-01 20 chr7:104584214-104584234 9.83e-01 20 chr2:169568815-169568835 9.75e-01 20 chr6:52217324-52217344 8.90e-01 20 chr10:49967358-49967378 4.86e-01 20 chr11:34270160-34270180 7.13e-01 20 chr1:160174444-160174464 5.12e-05 6_[+2(1.51e-05)]_6 chr17:5138224-5138244 4.34e-01 20 chr14:102291489-10229150 1.53e-01 20 chr9:5958450-5958470 8.76e-01 20 chr18:47861138-47861158 9.64e-01 20 chr16:68791409-68791429 1.63e-02 [+4(2.65e-05)]_12 chr16:69564653-69564673 2.39e-04 11_[+3(9.64e-06)]_1 chr17:36134717-36134737 5.57e-02 20 chr17:57449855-57449875 4.54e-01 20 chr19:45225700-45225720 1.50e-02 20 chr9:99003827-99003847 4.16e-01 20 chr19:36400358-36400378 5.41e-01 20 chr5:156347668-156347688 4.57e-01 20 chr17:30007214-30007234 5.92e-01 20 chr9:5459445-5459465 1.92e-02 [+4(4.11e-05)]_12 chr3:122202124-122202144 4.86e-01 20 chr1:153763803-153763823 2.16e-01 20 chr17:46912502-46912522 1.17e-01 20 chr1:161014732-161014752 1.41e-01 20 chr7:117413801-117413821 1.26e-01 20 chr2:42979637-42979657 9.32e-01 20 chr6:24940699-24940719 5.06e-01 20 chrX:148877475-148877495 2.36e-01 20 chr9:114727987-114728007 3.27e-01 20 chr22:37681230-37681250 4.08e-02 20 chr1:2509974-2509994 8.47e-01 20 chr16:27420060-27420080 4.74e-01 20 chr6:150322659-150322679 6.03e-01 20 chr1:117057842-117057862 9.69e-01 20 chr19:46018515-46018535 6.38e-01 20 chr6:30785216-30785236 3.19e-02 20 chr1:25054255-25054275 3.48e-01 20 chr14:76702729-76702749 2.00e-01 20 chr14:91708352-91708372 6.91e-02 20 chr12:53594372-53594392 3.46e-01 20 chr3:5068416-5068436 1.65e-01 20 chr2:228276196-228276216 9.15e-01 20 chr17:39835407-39835427 2.94e-02 20 chr2:148447273-148447293 9.10e-01 20 chr11:63399173-63399193 6.45e-04 4_[+5(1.07e-05)]_8 chr17:76333863-76333883 7.98e-01 20 chr22:47170217-47170237 8.89e-02 7_[+1(8.10e-05)]_5 chr6:84480799-84480819 8.36e-03 20 chr2:146967632-146967652 3.58e-01 20 chr6:64093947-64093967 5.42e-01 20 chr12:12186349-12186369 9.31e-01 20 chr9:36458582-36458602 1.11e-02 20 chr5:180232355-180232375 3.83e-01 20 chr7:98977966-98977986 9.37e-01 20 chr1:59898469-59898489 4.66e-01 20 chr17:34431007-34431027 1.27e-01 2_[+1(4.00e-05)]_10 chr4:103464313-103464333 5.40e-01 20 chr8:28862266-28862286 1.50e-02 20 chr15:77480311-77480331 9.94e-01 20 chr1:206677567-206677587 5.25e-01 20 chr13:51905022-51905042 3.70e-01 20 chr9:80531362-80531382 8.20e-01 20 chr3:187547045-187547065 2.20e-01 20 chr9:35634707-35634727 2.93e-01 20 chr17:47753914-47753934 7.61e-01 20 chr15:91440534-91440554 2.62e-01 20 chr2:166810506-166810526 1.64e-02 20 chr1:160752175-160752195 1.90e-02 20 chrX:153273491-153273511 2.36e-02 1_[+2(3.27e-05)]_11 chr9:117370160-117370180 1.88e-04 [+2(1.51e-05)]_12 chr3:118491756-118491776 8.98e-01 20 chr2:38936887-38936907 2.60e-01 20 chr14:72631271-72631291 9.73e-01 20 chr11:65341932-65341952 1.07e-03 12_[+4(2.65e-05)] chr21:42733796-42733816 2.07e-01 20 chr20:35994924-35994944 1.25e-01 1_[+1(4.00e-05)]_11 chr12:2488112-2488132 4.64e-01 20 chr16:21285688-21285708 1.94e-01 20 chr6:85256335-85256355 5.53e-01 20 chr8:80967371-80967391 3.12e-01 20 chr7:50484293-50484313 7.63e-01 20 chr12:27430923-27430943 9.10e-01 20 chr1:205449868-205449888 1.30e-03 11_[+3(1.96e-05)]_1 chr7:72011740-72011760 1.60e-03 12_[+2(7.08e-05)] chr13:41092827-41092847 2.74e-01 20 chr16:29822766-29822786 7.26e-01 20 chr11:95931205-95931225 2.93e-01 20 chr8:42658734-42658754 9.99e-01 20 chr5:153893342-153893362 9.58e-01 20 chr11:65431467-65431487 5.07e-01 20 chr4:152808765-152808785 4.47e-01 20 chr8:82199117-82199137 1.27e-01 5_[+1(8.10e-05)]_7 chr2:136743312-136743332 1.53e-01 20 chr5:75878251-75878271 9.64e-01 20 chr18:3324062-3324082 2.23e-01 20 chr17:46918898-46918918 2.92e-01 20 chr1:11000314-11000334 5.52e-01 20 chr12:98668808-98668828 6.97e-01 20 chr14:40443331-40443351 2.28e-02 20 chr16:10008436-10008456 9.79e-01 20 chr19:39074417-39074437 8.81e-01 20 chr11:118085203-11808522 4.82e-01 20 chr3:156806685-156806705 1.23e-01 20 chr10:74016988-74017008 4.65e-01 20 chr6:75994566-75994586 2.37e-03 20 chr4:40765498-40765518 1.65e-01 20 chr7:66351281-66351301 3.03e-01 20 chrX:70838418-70838438 1.06e-02 20 chr1:33458298-33458318 9.59e-04 [+4(4.11e-05)]_12 chrX:1623429-1623449 6.91e-01 20 chr12:7063067-7063087 2.23e-01 20 chr8:119971381-119971401 7.45e-01 20 chr6:130835143-130835163 8.85e-02 20 chr12:101381899-10138191 1.12e-01 20 chr4:57684349-57684369 6.11e-01 20 chr19:6528947-6528967 3.00e-01 20 chr1:32394371-32394391 5.40e-01 20 chr4:151973650-151973670 9.76e-01 20 chr7:99156190-99156210 5.53e-01 20 chr7:39629503-39629523 5.45e-01 20 chr3:17440801-17440821 9.72e-01 20 chr5:142437403-142437423 7.12e-01 20 chr13:77898183-77898203 5.98e-01 20 chr18:49242825-49242845 5.10e-01 20 chr3:9691988-9692008 4.70e-01 20 chr3:5020498-5020518 2.42e-01 20 chr10:29948166-29948186 5.03e-01 20 chr1:181031703-181031723 1.27e-03 20 chr19:44294905-44294925 8.25e-02 20 chr19:45946938-45946958 2.21e-02 20 chr20:52271687-52271707 8.80e-01 20 chr9:113717274-113717294 3.22e-01 20 chr1:202585394-202585414 3.80e-01 20 chr3:63908001-63908021 9.88e-01 20 chr6:143141120-143141140 5.78e-03 20 chrX:7002312-7002332 9.26e-01 20 chr15:40836257-40836277 4.31e-01 20 chr3:104240971-104240991 9.43e-01 20 chr16:69503864-69503884 9.56e-01 20 chr10:129863030-12986305 9.08e-01 20 chr19:42375794-42375814 1.50e-01 20 chr7:20338303-20338323 8.59e-01 20 chr19:6556618-6556638 8.85e-01 20 chr12:94699522-94699542 8.79e-01 20 chr15:40843027-40843047 4.43e-01 20 chr7:34794834-34794854 4.81e-01 20 chr5:94950917-94950937 9.56e-01 20 chr19:6947869-6947889 3.55e-01 20 chr5:176727464-176727484 1.64e-02 20 chr17:4843830-4843850 1.40e-01 20 chr18:52936307-52936327 1.20e-02 20 chr8:37761163-37761183 1.00e+00 20 chr11:59148142-59148162 3.21e-01 20 chr6:85257371-85257391 9.65e-01 20 chr2:161945337-161945357 1.22e-01 11_[+1(4.00e-05)]_1 chr11:93451564-93451584 1.25e-01 9_[+1(4.00e-05)]_3 chr2:207322138-207322158 9.58e-01 20 chr14:52340226-52340246 3.88e-01 20 chr2:37851277-37851297 5.53e-02 20 chr7:105752221-105752241 4.97e-01 20 chr16:66558896-66558916 3.21e-01 20 chr5:37672477-37672497 3.48e-01 20 chr8:131144301-131144321 3.53e-02 20 chr9:126512085-126512105 7.69e-02 1_[+1(8.10e-05)]_11 chr16:30177656-30177676 5.58e-02 20 chr22:42336080-42336100 9.89e-01 20 chr16:20915977-20915997 9.04e-01 20 chr18:3586818-3586838 5.24e-01 20 chr3:15598220-15598240 6.35e-01 20 chr6:24934298-24934318 8.45e-01 20 chr13:81052324-81052344 9.95e-01 20 chr2:43614636-43614656 7.15e-01 20 chr11:65189793-65189813 2.38e-01 20 chr17:28535426-28535446 1.11e-02 [+2(3.27e-05)]_12 chr19:35909051-35909071 3.25e-01 20 chr19:52074503-52074523 9.93e-01 20 chr15:66683204-66683224 3.34e-02 20 chr4:153564812-153564832 3.73e-01 20 chr15:85294023-85294043 1.41e-02 3_[+2(5.04e-05)]_9 chr2:17996841-17996861 5.76e-01 20 chr11:102216755-10221677 3.62e-01 20 chr1:33926898-33926918 9.86e-01 20 chr20:8380803-8380823 9.07e-01 20 chr1:186344925-186344945 2.91e-05 20 chr8:28259610-28259630 1.86e-01 12_[+1(8.10e-05)] chr17:49198489-49198509 8.57e-04 20 chr16:50310959-50310979 5.83e-01 20 chr17:28690978-28690998 9.71e-01 20 chr19:41283243-41283263 2.51e-02 20 chr15:74692323-74692343 4.35e-05 20 chr12:6432705-6432725 9.48e-01 20 chr3:90085110-90085130 1.18e-02 20 chr16:50769767-50769787 1.71e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n09.farnam.hpc.yale.internal ********************************************************************************